RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10102
         (86 letters)



>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
          [TaxId: 2336]}
          Length = 404

 Score = 24.7 bits (53), Expect = 1.9
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 52 WVYRYYSEDYLDLIAIV 68
          W++   +E Y+ L+ + 
Sbjct: 29 WLFEAITETYIPLLMMF 45


>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
           (KARI) {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 182

 Score = 22.9 bits (49), Expect = 7.1
 Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 11  YLESVAILPQLFLVSK--TGEAESITSHYLFALGAYRA 46
           +++   I P L  + +  +G A+++   Y   +G  R 
Sbjct: 140 FVKGGGI-PDLIAIYQDASGNAKNVALSYACGVGGGRT 176


>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal
          domain {Thermus thermophilus [TaxId: 274]}
          Length = 412

 Score = 22.7 bits (48), Expect = 8.5
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 48 YLLNWVYRYYSEDYLDLIAIV 68
          +    +Y   +E YL LI ++
Sbjct: 23 FGEETLYEAMAETYLPLIRVL 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.142    0.436 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,648
Number of extensions: 11610
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 4
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.5 bits)