Query psy10105
Match_columns 197
No_of_seqs 219 out of 1085
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 18:00:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 1.2E-20 4E-25 136.7 10.3 66 62-127 4-69 (83)
2 1x2n_A Homeobox protein pknox1 99.8 1.2E-19 4.2E-24 127.7 9.5 65 63-127 5-69 (73)
3 2lk2_A Homeobox protein TGIF1; 99.8 8.9E-20 3E-24 134.3 6.2 58 70-127 10-67 (89)
4 1du6_A PBX1, homeobox protein 99.8 1.8E-19 6E-24 123.7 6.8 61 65-125 3-63 (64)
5 3k2a_A Homeobox protein MEIS2; 99.8 2.6E-19 8.8E-24 124.8 7.4 58 70-127 3-60 (67)
6 1puf_B PRE-B-cell leukemia tra 99.8 6.5E-19 2.2E-23 124.0 9.0 62 66-127 2-63 (73)
7 1k61_A Mating-type protein alp 99.8 6.8E-19 2.3E-23 119.3 8.0 59 68-126 1-59 (60)
8 1b72_B Protein (PBX1); homeodo 99.8 1E-18 3.4E-23 126.7 8.1 62 66-127 2-63 (87)
9 1mnm_C Protein (MAT alpha-2 tr 99.7 2.8E-18 9.6E-23 124.7 8.4 61 64-124 26-86 (87)
10 1le8_B Mating-type protein alp 99.7 2.9E-18 1E-22 123.8 8.1 62 66-127 3-64 (83)
11 2ecc_A Homeobox and leucine zi 99.7 7.5E-17 2.5E-21 115.5 9.6 65 66-134 4-68 (76)
12 2dmu_A Homeobox protein goosec 99.7 7.9E-17 2.7E-21 112.3 8.6 63 63-128 5-67 (70)
13 2e1o_A Homeobox protein PRH; D 99.7 9.9E-17 3.4E-21 112.0 8.4 64 62-128 4-67 (70)
14 1akh_A Protein (mating-type pr 99.7 4.5E-17 1.5E-21 110.5 6.5 58 64-124 4-61 (61)
15 2cra_A Homeobox protein HOX-B1 99.7 1E-16 3.4E-21 111.9 8.3 62 63-127 5-66 (70)
16 2djn_A Homeobox protein DLX-5; 99.7 1.1E-16 3.9E-21 111.6 8.2 63 62-127 4-66 (70)
17 2da1_A Alpha-fetoprotein enhan 99.7 1E-16 3.5E-21 111.6 7.6 64 62-128 4-67 (70)
18 2da2_A Alpha-fetoprotein enhan 99.7 1.5E-16 5.3E-21 110.7 8.2 62 63-127 5-66 (70)
19 2dmt_A Homeobox protein BARH-l 99.7 2.9E-16 9.9E-21 112.3 9.2 63 63-128 15-77 (80)
20 1bw5_A ISL-1HD, insulin gene e 99.7 1.9E-16 6.4E-21 109.2 7.8 61 64-127 2-62 (66)
21 1ig7_A Homeotic protein MSX-1; 99.7 2.6E-16 8.8E-21 105.7 7.5 57 66-125 1-57 (58)
22 2da3_A Alpha-fetoprotein enhan 99.7 3.1E-16 1.1E-20 111.6 8.1 62 63-127 15-76 (80)
23 2hdd_A Protein (engrailed home 99.6 2.6E-16 8.9E-21 106.9 7.2 58 65-125 3-60 (61)
24 2dmq_A LIM/homeobox protein LH 99.6 5.8E-16 2E-20 110.4 9.3 63 62-127 4-66 (80)
25 1jgg_A Segmentation protein EV 99.6 3.3E-16 1.1E-20 106.1 7.4 58 66-126 2-59 (60)
26 2h1k_A IPF-1, pancreatic and d 99.6 3.1E-16 1.1E-20 107.3 7.3 59 65-126 3-61 (63)
27 1ahd_P Antennapedia protein mu 99.6 3.3E-16 1.1E-20 108.9 7.3 61 66-129 3-63 (68)
28 2dms_A Homeobox protein OTX2; 99.6 8.7E-16 3E-20 109.7 9.6 62 63-127 5-66 (80)
29 2cue_A Paired box protein PAX6 99.6 5.5E-16 1.9E-20 110.9 8.5 63 63-128 5-67 (80)
30 3rkq_A Homeobox protein NKX-2. 99.6 6.1E-16 2.1E-20 103.4 8.1 57 65-124 2-58 (58)
31 2k40_A Homeobox expressed in E 99.6 6.1E-16 2.1E-20 107.0 8.2 59 66-127 2-60 (67)
32 2da5_A Zinc fingers and homeob 99.6 7.6E-16 2.6E-20 109.1 8.8 63 64-129 6-68 (75)
33 2da4_A Hypothetical protein DK 99.6 2.8E-16 9.7E-21 112.3 6.5 62 63-127 6-71 (80)
34 1nk2_P Homeobox protein VND; h 99.6 6.6E-16 2.3E-20 109.7 8.1 63 62-127 6-68 (77)
35 2l7z_A Homeobox protein HOX-A1 99.6 8.2E-16 2.8E-20 108.3 8.4 61 64-127 6-66 (73)
36 2vi6_A Homeobox protein nanog; 99.6 4.9E-16 1.7E-20 105.9 7.0 58 65-125 3-60 (62)
37 3a02_A Homeobox protein arista 99.6 5.4E-16 1.8E-20 105.0 6.7 57 68-127 2-58 (60)
38 1fjl_A Paired protein; DNA-bin 99.6 8.1E-16 2.8E-20 110.1 7.7 61 64-127 17-77 (81)
39 1zq3_P PRD-4, homeotic bicoid 99.6 1.2E-15 4E-20 106.0 8.0 60 65-127 2-61 (68)
40 2kt0_A Nanog, homeobox protein 99.6 1.8E-15 6.1E-20 108.8 9.2 61 64-127 21-81 (84)
41 2hi3_A Homeodomain-only protei 99.6 2E-15 6.7E-20 106.2 9.2 61 65-128 2-63 (73)
42 1yz8_P Pituitary homeobox 2; D 99.6 4.4E-16 1.5E-20 108.1 5.7 61 64-127 2-62 (68)
43 1b8i_A Ultrabithorax, protein 99.6 7.9E-16 2.7E-20 110.5 7.2 62 63-127 18-79 (81)
44 1ftt_A TTF-1 HD, thyroid trans 99.6 1.3E-15 4.5E-20 105.7 7.7 61 65-128 2-62 (68)
45 1uhs_A HOP, homeodomain only p 99.6 2.4E-15 8.3E-20 105.4 9.1 60 66-128 2-62 (72)
46 2dn0_A Zinc fingers and homeob 99.6 2.2E-15 7.5E-20 106.7 8.6 60 65-127 8-67 (76)
47 1puf_A HOX-1.7, homeobox prote 99.6 2.5E-15 8.7E-20 106.7 8.2 61 64-127 12-72 (77)
48 2r5y_A Homeotic protein sex co 99.6 2.1E-15 7.2E-20 109.7 7.8 61 64-127 27-87 (88)
49 3a01_A Homeodomain-containing 99.6 3.4E-15 1.2E-19 109.9 8.4 61 64-127 16-76 (93)
50 2m0c_A Homeobox protein arista 99.6 4.2E-15 1.4E-19 104.4 8.4 61 64-127 8-68 (75)
51 3a03_A T-cell leukemia homeobo 99.6 2.7E-15 9.3E-20 100.4 6.6 53 71-126 3-55 (56)
52 2ecb_A Zinc fingers and homeob 99.6 8E-15 2.7E-19 107.8 9.5 58 67-127 13-70 (89)
53 1b72_A Protein (homeobox prote 99.6 5.6E-15 1.9E-19 109.3 7.7 61 64-127 33-93 (97)
54 2ly9_A Zinc fingers and homeob 99.6 1.2E-14 4E-19 102.2 8.9 61 64-127 5-65 (74)
55 1wh5_A ZF-HD homeobox family p 99.6 4.4E-15 1.5E-19 106.7 6.8 62 64-125 16-78 (80)
56 2cuf_A FLJ21616 protein; homeo 99.6 5.5E-15 1.9E-19 109.0 7.4 63 63-128 5-82 (95)
57 3nau_A Zinc fingers and homeob 99.6 4.9E-15 1.7E-19 103.3 6.4 53 71-126 10-62 (66)
58 3d1n_I POU domain, class 6, tr 99.6 7.4E-15 2.5E-19 116.6 8.1 63 60-125 88-150 (151)
59 2dmp_A Zinc fingers and homeob 99.6 3.1E-14 1E-18 104.1 10.5 59 67-128 15-73 (89)
60 3nar_A ZHX1, zinc fingers and 99.5 1.1E-14 3.6E-19 107.7 7.3 61 64-127 24-84 (96)
61 1au7_A Protein PIT-1, GHF-1; c 99.5 5.7E-15 2E-19 117.0 4.9 91 31-125 51-144 (146)
62 2d5v_A Hepatocyte nuclear fact 99.5 1.4E-14 4.7E-19 116.2 6.9 61 64-127 96-156 (164)
63 2xsd_C POU domain, class 3, tr 99.5 5.3E-15 1.8E-19 119.4 4.1 94 30-127 60-158 (164)
64 2da6_A Hepatocyte nuclear fact 99.5 4.5E-14 1.5E-18 106.2 8.6 64 61-127 2-86 (102)
65 2e19_A Transcription factor 8; 99.5 4.2E-14 1.4E-18 97.6 7.8 55 68-125 6-60 (64)
66 1wh7_A ZF-HD homeobox family p 99.5 2.2E-14 7.4E-19 103.3 5.9 62 63-125 15-78 (80)
67 1e3o_C Octamer-binding transcr 99.5 4.3E-14 1.5E-18 113.3 7.3 60 64-126 100-159 (160)
68 2l9r_A Homeobox protein NKX-3. 99.5 1.2E-13 4.2E-18 96.8 6.8 54 71-127 10-63 (69)
69 1lfb_A Liver transcription fac 99.4 2.2E-13 7.5E-18 101.8 6.9 61 64-127 8-89 (99)
70 1wi3_A DNA-binding protein SAT 99.4 4E-13 1.4E-17 94.3 7.3 61 63-126 5-66 (71)
71 2cqx_A LAG1 longevity assuranc 99.4 1.6E-13 5.4E-18 96.7 5.3 60 66-127 9-68 (72)
72 3l1p_A POU domain, class 5, tr 99.4 2.3E-13 7.7E-18 108.7 6.6 60 64-126 95-154 (155)
73 1x2m_A LAG1 longevity assuranc 99.4 6.2E-13 2.1E-17 92.1 5.8 53 73-127 8-60 (64)
74 2h8r_A Hepatocyte nuclear fact 99.2 7.5E-12 2.6E-16 105.5 6.4 57 65-124 142-219 (221)
75 1ic8_A Hepatocyte nuclear fact 99.2 3.4E-12 1.1E-16 105.8 3.8 59 64-125 114-193 (194)
76 1mh3_A Maltose binding-A1 home 99.2 7.8E-12 2.7E-16 110.0 5.4 55 67-124 367-421 (421)
77 2da7_A Zinc finger homeobox pr 99.2 3.8E-11 1.3E-15 84.5 6.0 47 74-123 14-60 (71)
78 2nzz_A Penetratin conjugated G 96.9 0.00011 3.6E-09 45.4 -0.7 18 110-127 1-18 (37)
79 2ys9_A Homeobox and leucine zi 96.0 0.0075 2.6E-07 42.0 4.2 44 73-119 14-57 (70)
80 1hlv_A CENP-B, major centromer 86.8 1.8 6.1E-05 31.5 6.4 52 67-124 3-54 (131)
81 2glo_A Brinker CG9653-PA; prot 85.5 1 3.5E-05 28.8 4.0 49 68-120 2-50 (59)
82 3hug_A RNA polymerase sigma fa 81.5 1.4 4.9E-05 30.4 3.7 48 72-127 38-85 (92)
83 1tc3_C Protein (TC3 transposas 79.4 2.9 0.0001 24.2 4.2 43 68-118 2-44 (51)
84 2o8x_A Probable RNA polymerase 78.5 2.1 7.2E-05 27.4 3.5 49 71-127 15-63 (70)
85 3mzy_A RNA polymerase sigma-H 78.1 3.3 0.00011 30.2 5.0 48 71-127 109-156 (164)
86 2elh_A CG11849-PA, LD40883P; s 77.6 8.6 0.00029 26.3 6.7 48 66-121 17-64 (87)
87 3c57_A Two component transcrip 74.8 7.8 0.00027 27.0 5.9 48 71-127 27-74 (95)
88 2rnj_A Response regulator prot 71.0 8.8 0.0003 26.3 5.4 47 71-126 29-75 (91)
89 1ku3_A Sigma factor SIGA; heli 70.9 4.2 0.00014 26.7 3.5 53 71-127 10-63 (73)
90 1tty_A Sigma-A, RNA polymerase 70.7 4.8 0.00016 27.5 3.9 53 71-127 18-70 (87)
91 1rp3_A RNA polymerase sigma fa 69.2 3.5 0.00012 32.2 3.3 49 71-127 187-235 (239)
92 1s7o_A Hypothetical UPF0122 pr 68.7 6 0.0002 28.9 4.3 48 72-127 23-70 (113)
93 1x3u_A Transcriptional regulat 67.6 7 0.00024 25.6 4.1 46 72-126 17-62 (79)
94 1je8_A Nitrate/nitrite respons 67.5 5.8 0.0002 26.9 3.8 47 71-126 21-67 (82)
95 1p4w_A RCSB; solution structur 66.9 12 0.0004 26.7 5.4 48 70-126 33-80 (99)
96 1or7_A Sigma-24, RNA polymeras 66.7 5 0.00017 30.4 3.6 48 72-127 141-188 (194)
97 2p7v_B Sigma-70, RNA polymeras 65.9 6.8 0.00023 25.3 3.7 53 71-127 5-57 (68)
98 2jn6_A Protein CGL2762, transp 65.7 12 0.00041 25.7 5.2 44 69-119 3-47 (97)
99 1jko_C HIN recombinase, DNA-in 65.4 6.6 0.00023 23.0 3.4 41 70-118 4-44 (52)
100 1fse_A GERE; helix-turn-helix 63.7 8.8 0.0003 24.6 4.0 48 70-126 10-57 (74)
101 2q1z_A RPOE, ECF SIGE; ECF sig 62.7 3.9 0.00013 30.8 2.3 47 72-126 136-182 (184)
102 1xsv_A Hypothetical UPF0122 pr 62.5 6.8 0.00023 28.4 3.5 48 72-127 26-73 (113)
103 2jpc_A SSRB; DNA binding prote 61.6 8.1 0.00028 24.0 3.4 28 99-126 17-44 (61)
104 3lsg_A Two-component response 60.7 20 0.0007 24.6 5.7 41 76-119 3-43 (103)
105 2rn7_A IS629 ORFA; helix, all 58.5 24 0.00081 24.6 5.8 51 69-120 4-55 (108)
106 3bd1_A CRO protein; transcript 57.9 5.7 0.00019 26.2 2.2 23 98-120 14-36 (79)
107 2lfw_A PHYR sigma-like domain; 57.5 15 0.0005 27.4 4.8 50 71-128 93-142 (157)
108 2xi8_A Putative transcription 55.5 5.3 0.00018 24.7 1.6 22 98-119 17-38 (66)
109 2r1j_L Repressor protein C2; p 54.9 5.6 0.00019 24.8 1.7 22 98-119 21-42 (68)
110 1zug_A Phage 434 CRO protein; 53.5 5.7 0.0002 25.0 1.6 23 98-120 19-41 (71)
111 1iuf_A Centromere ABP1 protein 52.8 26 0.00089 26.2 5.5 51 66-121 6-62 (144)
112 3bs3_A Putative DNA-binding pr 50.8 7.2 0.00025 25.0 1.8 22 98-119 26-47 (76)
113 1adr_A P22 C2 repressor; trans 50.4 7.2 0.00025 24.9 1.7 22 98-119 21-42 (76)
114 2b5a_A C.BCLI; helix-turn-heli 49.5 7.6 0.00026 24.9 1.7 22 98-119 26-47 (77)
115 1k78_A Paired box protein PAX5 49.3 59 0.002 23.6 7.0 45 70-122 31-75 (149)
116 2x48_A CAG38821; archeal virus 48.9 10 0.00035 23.2 2.2 21 98-118 34-54 (55)
117 1r69_A Repressor protein CI; g 48.7 7.8 0.00027 24.2 1.6 22 98-119 17-38 (69)
118 2wiu_B HTH-type transcriptiona 48.1 11 0.00038 24.8 2.4 39 75-120 12-50 (88)
119 1hlv_A CENP-B, major centromer 47.4 40 0.0014 24.0 5.6 58 66-123 67-130 (131)
120 3kz3_A Repressor protein CI; f 47.1 7.7 0.00026 25.5 1.5 22 99-120 29-50 (80)
121 3t72_q RNA polymerase sigma fa 47.1 32 0.0011 24.4 4.9 53 71-127 19-71 (99)
122 3omt_A Uncharacterized protein 47.0 8 0.00027 24.8 1.5 22 98-119 24-45 (73)
123 3b7h_A Prophage LP1 protein 11 47.0 8.5 0.00029 24.7 1.6 23 98-120 23-45 (78)
124 3clo_A Transcriptional regulat 46.9 31 0.0011 27.9 5.4 49 70-127 196-244 (258)
125 2a6c_A Helix-turn-helix motif; 46.8 9.6 0.00033 25.4 1.9 23 98-120 34-56 (83)
126 1rzs_A Antirepressor, regulato 46.0 10 0.00036 24.2 1.9 19 98-116 13-31 (61)
127 1y7y_A C.AHDI; helix-turn-heli 45.8 9.4 0.00032 24.2 1.7 22 98-119 29-50 (74)
128 3ulq_B Transcriptional regulat 44.4 31 0.0011 23.8 4.4 48 69-125 27-74 (90)
129 2ict_A Antitoxin HIGA; helix-t 43.3 11 0.00039 25.4 1.9 23 98-120 24-46 (94)
130 2hin_A GP39, repressor protein 43.3 17 0.00058 24.6 2.7 21 98-118 13-33 (71)
131 2kpj_A SOS-response transcript 42.9 11 0.00036 25.7 1.7 23 98-120 25-47 (94)
132 1l0o_C Sigma factor; bergerat 41.8 5.5 0.00019 31.0 0.0 46 71-124 198-243 (243)
133 2ef8_A C.ECOT38IS, putative tr 40.9 13 0.00043 24.2 1.8 23 98-120 26-48 (84)
134 2k9q_A Uncharacterized protein 40.5 11 0.00039 24.4 1.5 22 98-119 18-39 (77)
135 1neq_A DNA-binding protein NER 39.5 14 0.0005 24.7 1.9 20 99-118 26-45 (74)
136 1u78_A TC3 transposase, transp 38.1 70 0.0024 22.5 5.7 45 68-120 3-47 (141)
137 1lmb_3 Protein (lambda repress 37.6 14 0.00046 24.7 1.5 22 98-119 33-54 (92)
138 3f6w_A XRE-family like protein 37.6 14 0.00047 24.2 1.5 21 99-119 31-51 (83)
139 1pdn_C Protein (PRD paired); p 35.5 56 0.0019 22.4 4.7 48 68-118 72-126 (128)
140 1uxc_A FRUR (1-57), fructose r 35.4 18 0.00061 23.8 1.8 22 99-120 4-25 (65)
141 2l49_A C protein; P2 bacteriop 35.0 17 0.00057 24.6 1.7 23 98-120 20-42 (99)
142 3t76_A VANU, transcriptional r 34.9 16 0.00056 25.2 1.6 22 98-119 40-61 (88)
143 3mn2_A Probable ARAC family tr 34.9 47 0.0016 22.8 4.1 40 76-119 3-42 (108)
144 2ewt_A BLDD, putative DNA-bind 34.2 17 0.00059 22.8 1.6 22 98-119 24-47 (71)
145 1x57_A Endothelial differentia 34.1 19 0.00064 24.1 1.8 43 71-120 9-51 (91)
146 3qq6_A HTH-type transcriptiona 33.6 28 0.00095 22.8 2.6 21 98-118 26-46 (78)
147 2q0o_A Probable transcriptiona 33.6 46 0.0016 26.3 4.4 48 70-126 174-221 (236)
148 3s8q_A R-M controller protein; 33.1 17 0.00059 23.7 1.4 22 98-119 27-48 (82)
149 3fmy_A HTH-type transcriptiona 32.2 25 0.00084 22.8 2.1 39 71-119 10-48 (73)
150 2ofy_A Putative XRE-family tra 31.8 19 0.00063 23.7 1.4 22 99-120 31-52 (86)
151 1pdn_C Protein (PRD paired); p 31.7 39 0.0013 23.3 3.3 45 70-122 16-60 (128)
152 3kz3_A Repressor protein CI; f 31.4 82 0.0028 20.2 4.7 38 78-118 40-77 (80)
153 2v79_A DNA replication protein 30.7 90 0.0031 23.2 5.4 48 72-122 30-78 (135)
154 2pij_A Prophage PFL 6 CRO; tra 30.7 24 0.00081 22.1 1.8 20 98-117 16-35 (67)
155 2k27_A Paired box protein PAX- 30.4 1.5E+02 0.0052 21.6 6.6 49 69-120 81-136 (159)
156 1jhf_A LEXA repressor; LEXA SO 29.8 82 0.0028 24.2 5.2 41 72-118 4-49 (202)
157 3cec_A Putative antidote prote 28.7 25 0.00084 24.2 1.7 22 98-119 34-55 (104)
158 3lph_A Protein REV; helix-loop 28.3 23 0.0008 24.4 1.4 20 76-98 17-36 (72)
159 3oou_A LIN2118 protein; protei 28.2 76 0.0026 21.7 4.3 40 76-119 6-45 (108)
160 3op9_A PLI0006 protein; struct 27.7 28 0.00095 24.3 1.9 23 98-120 25-47 (114)
161 1b0n_A Protein (SINR protein); 27.6 36 0.0012 23.2 2.4 21 98-118 17-37 (111)
162 3eus_A DNA-binding protein; st 27.3 25 0.00086 23.4 1.5 22 99-120 31-52 (86)
163 2eby_A Putative HTH-type trans 27.3 25 0.00085 24.5 1.5 23 98-120 27-49 (113)
164 3ivp_A Putative transposon-rel 26.9 24 0.00084 25.1 1.5 23 98-120 28-50 (126)
165 2lv7_A Calcium-binding protein 26.8 1.5E+02 0.0053 20.2 6.0 50 68-117 26-79 (100)
166 1c05_A Ribosomal protein S4 de 26.6 39 0.0013 26.1 2.7 28 96-123 11-38 (159)
167 3mkl_A HTH-type transcriptiona 26.4 49 0.0017 23.3 3.0 41 74-118 6-46 (120)
168 2k9s_A Arabinose operon regula 26.2 1.4E+02 0.0049 20.2 5.5 40 77-119 5-44 (107)
169 1l3l_A Transcriptional activat 25.9 65 0.0022 25.4 4.0 49 69-126 171-219 (234)
170 2l8n_A Transcriptional repress 25.6 34 0.0012 22.5 1.9 22 98-119 12-33 (67)
171 3oio_A Transcriptional regulat 25.3 68 0.0023 22.2 3.6 40 76-119 8-47 (113)
172 2pmy_A RAS and EF-hand domain- 25.3 90 0.0031 20.4 4.1 48 71-118 20-69 (91)
173 1zs4_A Regulatory protein CII; 25.0 43 0.0015 23.5 2.4 19 98-116 27-45 (83)
174 2ppx_A AGR_C_3184P, uncharacte 24.7 31 0.001 23.6 1.6 22 98-119 46-67 (99)
175 2jvl_A TRMBF1; coactivator, he 24.6 28 0.00097 24.4 1.4 43 71-120 30-74 (107)
176 3mlf_A Transcriptional regulat 24.4 34 0.0012 24.2 1.8 23 98-120 39-61 (111)
177 3vk0_A NHTF, transcriptional r 23.9 29 0.00099 24.4 1.3 40 74-120 20-59 (114)
178 2q24_A Putative TETR family tr 23.4 38 0.0013 25.0 2.0 40 77-121 21-60 (194)
179 2a6h_F RNA polymerase sigma fa 23.1 1E+02 0.0035 27.2 5.1 50 71-124 360-409 (423)
180 3f52_A CLP gene regulator (CLG 22.6 33 0.0011 24.0 1.5 41 73-120 26-66 (117)
181 3trb_A Virulence-associated pr 22.6 35 0.0012 24.2 1.5 23 98-120 30-52 (104)
182 3lfp_A CSP231I C protein; tran 22.3 38 0.0013 22.9 1.7 22 98-119 17-42 (98)
183 3g5g_A Regulatory protein; tra 22.3 38 0.0013 23.5 1.7 22 98-119 44-65 (99)
184 3or1_C Sulfite reductase GAMA; 21.8 1.2E+02 0.0041 22.0 4.4 42 72-118 42-86 (105)
185 1xwr_A Regulatory protein CII; 21.3 45 0.0015 23.9 1.9 21 97-117 25-45 (97)
186 3kxa_A NGO0477 protein, putati 20.8 40 0.0014 25.1 1.6 23 98-120 84-106 (141)
187 3qp6_A CVIR transcriptional re 20.7 1E+02 0.0035 25.1 4.3 48 70-126 196-243 (265)
188 1j9i_A GPNU1 DBD;, terminase s 20.0 69 0.0024 20.5 2.5 21 98-118 5-25 (68)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=136.65 Aligned_cols=66 Identities=38% Similarity=0.656 Sum_probs=62.2
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 62 GYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 62 ~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.+.+++|+.|+.+++.+|++||.+|..||||+.++|..||..|||+..||.+||+|+|+|.|+.+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 446778888999999999999999999999999999999999999999999999999999999876
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.2e-19 Score=127.65 Aligned_cols=65 Identities=37% Similarity=0.644 Sum_probs=60.9
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+.+++|+.|+..++.+|+.||.+|..||||+.+++..||..|||+..||.+||+|+|+|.|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 34567788999999999999999999999999999999999999999999999999999999876
No 3
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.79 E-value=8.9e-20 Score=134.32 Aligned_cols=58 Identities=41% Similarity=0.711 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.-|+++++.+|++||.+|..||||+.++|.+||.+|||+.+||+|||+|+|+|.++.+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 4599999999999999999999999999999999999999999999999999999775
No 4
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=1.8e-19 Score=123.73 Aligned_cols=61 Identities=34% Similarity=0.556 Sum_probs=58.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhh
Q psy10105 65 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~ 125 (197)
.+++|+.|+.+++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|+|.|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 4678889999999999999999999999999999999999999999999999999999875
No 5
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.6e-19 Score=124.78 Aligned_cols=58 Identities=38% Similarity=0.638 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
++|+++++.+|++||.+|..||||+..+|..||..|||+..||.+||+|+|+|.|+.+
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 4799999999999999999999999999999999999999999999999999999775
No 6
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.78 E-value=6.5e-19 Score=123.95 Aligned_cols=62 Identities=37% Similarity=0.611 Sum_probs=59.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+++|+.|+..++.+|+.||.+|..+|||+..++..||..+||+..||.+||+|+|+|.|+..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 57788999999999999999999999999999999999999999999999999999998765
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.77 E-value=6.8e-19 Score=119.33 Aligned_cols=59 Identities=27% Similarity=0.453 Sum_probs=55.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 68 rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
||+.|+.+++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 57889999999999999888889999999999999999999999999999999998753
No 8
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.77 E-value=1e-18 Score=126.70 Aligned_cols=62 Identities=37% Similarity=0.611 Sum_probs=58.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+++|+.|+..++.+|+.||.+|..+|||+..++..||..+||+..||.+||+|+|+|.|+..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 57888999999999999999999999999999999999999999999999999999998775
No 9
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.75 E-value=2.8e-18 Score=124.68 Aligned_cols=61 Identities=26% Similarity=0.431 Sum_probs=57.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhh
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 124 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k 124 (197)
..+++|+.|+.+++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4567788999999999999999888899999999999999999999999999999999976
No 10
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.75 E-value=2.9e-18 Score=123.78 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=56.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+++|+.|+.+++.+|+.||..|..+|||+..++..||..|||+..||.+||+|+|+|.|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 45666699999999999999999999999999999999999999999999999999988653
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=7.5e-17 Score=115.51 Aligned_cols=65 Identities=23% Similarity=0.444 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcccCccCCC
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPK 134 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~~~~~~~ 134 (197)
+.+|+.|+.+++.+|++|| ..||||+..++.+||+.|||+..||.+||+|+|.|.|+.. ..|-..
T Consensus 4 g~~r~kfT~~Ql~~Le~~F---~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~-l~w~~~ 68 (76)
T 2ecc_A 4 GSSGKRKTKEQLAILKSFF---LQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ-LKWFRD 68 (76)
T ss_dssp SCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC-CSSTTC
T ss_pred CCCCCCCCHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH-HHHHHH
Confidence 4567779999999999999 8899999999999999999999999999999999998774 345443
No 12
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=112.34 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=58.2
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
...++.|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLF---QETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 4567788899999999999999 78999999999999999999999999999999999997753
No 13
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=9.9e-17 Score=111.96 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=58.5
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 62 GYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 62 ~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
+...+++|..|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|+|.|+...
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKF---ETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 34566788899999999999999 88999999999999999999999999999999999997753
No 14
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.68 E-value=4.5e-17 Score=110.53 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=47.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhh
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 124 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k 124 (197)
+.+++|+.|+.+++.+|+.|| ..||||+..++..||..+||+..||.+||+|+|+|.|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f---~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVF---RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 346678889999999999999 7789999999999999999999999999999999864
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1e-16 Score=111.93 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=57.5
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
...+++|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREY---AANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 3567788899999999999999 8899999999999999999999999999999999988765
No 16
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=111.65 Aligned_cols=63 Identities=30% Similarity=0.365 Sum_probs=58.1
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 62 GYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 62 ~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
..+.++.|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRF---QKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH---cCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 34567788899999999999999 8999999999999999999999999999999999988765
No 17
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=111.64 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=58.6
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 62 GYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 62 ~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
..+.++.|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYF---DINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHH---HHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH---HHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 34567788899999999999999 88999999999999999999999999999999999987653
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=110.74 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=57.6
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+.++.|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFF---DANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4567788899999999999999 7899999999999999999999999999999999998765
No 19
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=112.34 Aligned_cols=63 Identities=25% Similarity=0.293 Sum_probs=57.6
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
.+.++.|+.|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|+|.|+..+
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRF---EKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 3456677889999999999999 88999999999999999999999999999999999987653
No 20
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.66 E-value=1.9e-16 Score=109.24 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=56.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.++.|..|+.++..+|+.+| ..+|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCY---AANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 356788899999999999999 7799999999999999999999999999999999988654
No 21
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=2.6e-16 Score=105.73 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhh
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~ 125 (197)
++.|+.|+.++..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKF---RQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4678899999999999999 88999999999999999999999999999999999875
No 22
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=111.62 Aligned_cols=62 Identities=23% Similarity=0.197 Sum_probs=57.0
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+.++.|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|+|.|+..
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKY---LLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3456778889999999999999 8889999999999999999999999999999999998765
No 23
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.65 E-value=2.6e-16 Score=106.94 Aligned_cols=58 Identities=28% Similarity=0.380 Sum_probs=52.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhh
Q psy10105 65 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~ 125 (197)
.++.|+.|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREF---NENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 46788899999999999999 88999999999999999999999999999999999875
No 24
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=110.41 Aligned_cols=63 Identities=24% Similarity=0.348 Sum_probs=58.3
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 62 GYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 62 ~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
....++.|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYF---AINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 34567788899999999999999 8899999999999999999999999999999999999775
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=3.3e-16 Score=106.11 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
++.|+.|+.++..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEF---YKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678899999999999999 889999999999999999999999999999999998864
No 26
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.65 E-value=3.1e-16 Score=107.31 Aligned_cols=59 Identities=27% Similarity=0.408 Sum_probs=54.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 65 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
.++.|+.|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEF---LFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 56788899999999999999 889999999999999999999999999999999998875
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.64 E-value=3.3e-16 Score=108.89 Aligned_cols=61 Identities=34% Similarity=0.439 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcccC
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 129 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~~ 129 (197)
++.|+.|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..+.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHH---HHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCcCHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 5678899999999999999 889999999999999999999999999999999999987654
No 28
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=8.7e-16 Score=109.74 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=57.7
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+.++.|+.|+.+++.+|+.+| ..++||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALF---AKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 3567788899999999999999 8899999999999999999999999999999999998775
No 29
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=5.5e-16 Score=110.87 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=58.4
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
...++.|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEF---ERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 4567788899999999999999 89999999999999999999999999999999999987753
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.64 E-value=6.1e-16 Score=103.38 Aligned_cols=57 Identities=30% Similarity=0.366 Sum_probs=53.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhh
Q psy10105 65 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 124 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k 124 (197)
.++.|..|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRF---KQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 46678899999999999999 8999999999999999999999999999999999864
No 31
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.64 E-value=6.1e-16 Score=106.96 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
++.|+.|+.++..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVF---RVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 5678899999999999999 8999999999999999999999999999999999988664
No 32
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=109.08 Aligned_cols=63 Identities=25% Similarity=0.409 Sum_probs=57.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcccC
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 129 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~~ 129 (197)
..+.+|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..+.
T Consensus 6 ~~~~kr~~~t~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 6 SGPTKYKERAPEQLRALESSF---AQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CSSCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCCCccCCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 345678889999999999999 889999999999999999999999999999999999987643
No 33
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-16 Score=112.27 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=56.6
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKN----PYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~n----PYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+.+++|+.|+.+++.+|+.|| ..+ +||+..++..||..+||+..||.+||+|+|+|.|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYW---DNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHH---TTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 3556778889999999999999 667 9999999999999999999999999999999998754
No 34
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.63 E-value=6.6e-16 Score=109.71 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=57.7
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 62 GYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 62 ~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
..+.+++|+.|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRF---RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 34567778899999999999999 8899999999999999999999999999999999998764
No 35
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.63 E-value=8.2e-16 Score=108.28 Aligned_cols=61 Identities=25% Similarity=0.305 Sum_probs=57.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.+++|..|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREY---ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHH---HHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHH---hhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 457788899999999999999 8899999999999999999999999999999999998764
No 36
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.63 E-value=4.9e-16 Score=105.91 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=51.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhh
Q psy10105 65 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~ 125 (197)
.++.|+.|+.++..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRF---QKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 46778899999999999999 88999999999999999999999999999999999875
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.63 E-value=5.4e-16 Score=105.04 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 68 rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.|..|+.++..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAF---SRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 46789999999999999 7899999999999999999999999999999999988764
No 38
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.62 E-value=8.1e-16 Score=110.14 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=56.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.++.|+.|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|+|.|+..
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAF---ERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 456778889999999999999 7899999999999999999999999999999999988754
No 39
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.2e-15 Score=106.03 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=56.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 65 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.++.|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHF---LQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 46788899999999999999 8999999999999999999999999999999999998775
No 40
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=108.80 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=56.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.++.|+.|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRF---QRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHH---HHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 456778889999999999999 8899999999999999999999999999999999988654
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=2e-15 Score=106.23 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=56.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 65 LAARRKNATRESTATLKAWLNEHK-KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~-~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
.+++|..|+.++..+|+.+| . .++||+..++..||..+||+..||.+||+|+|.|.|+..+
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F---~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNF---NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHH---HHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 46788899999999999999 7 5999999999999999999999999999999999998763
No 42
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.62 E-value=4.4e-16 Score=108.06 Aligned_cols=61 Identities=26% Similarity=0.471 Sum_probs=57.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.++.|+.|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATF---QRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHH---TTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 357788899999999999999 8899999999999999999999999999999999998765
No 43
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.62 E-value=7.9e-16 Score=110.48 Aligned_cols=62 Identities=32% Similarity=0.369 Sum_probs=53.8
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
...++.|+.|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3467788899999999999999 8899999999999999999999999999999999998764
No 44
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.61 E-value=1.3e-15 Score=105.74 Aligned_cols=61 Identities=30% Similarity=0.429 Sum_probs=56.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 65 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
.+++|+.|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRF---KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHH---HHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 36678899999999999999 88999999999999999999999999999999999997753
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=2.4e-15 Score=105.38 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 66 AARRKNATRESTATLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~-nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
.++|+.|+.++..+|+.+| .. ++||+..++..||..+||+..||.+||+|+|.|.|+..+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F---~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNF---NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHH---HSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHH---HccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 3567889999999999999 85 999999999999999999999999999999999998763
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=106.74 Aligned_cols=60 Identities=20% Similarity=0.396 Sum_probs=55.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 65 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
....|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSF---CRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHH---HHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 44568889999999999999 8899999999999999999999999999999999988764
No 47
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.60 E-value=2.5e-15 Score=106.68 Aligned_cols=61 Identities=30% Similarity=0.376 Sum_probs=56.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
..++.|+.|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEF---LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHH---hccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 456778889999999999999 8899999999999999999999999999999999998764
No 48
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.60 E-value=2.1e-15 Score=109.65 Aligned_cols=61 Identities=31% Similarity=0.426 Sum_probs=54.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.+++|+.|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 467788899999999999999 8999999999999999999999999999999999988754
No 49
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.59 E-value=3.4e-15 Score=109.92 Aligned_cols=61 Identities=33% Similarity=0.435 Sum_probs=57.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.+++|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRF---HKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 456778899999999999999 8899999999999999999999999999999999999875
No 50
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=104.38 Aligned_cols=61 Identities=26% Similarity=0.390 Sum_probs=56.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.++.|+.|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVF---QKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 456678889999999999999 8899999999999999999999999999999999988764
No 51
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=100.42 Aligned_cols=53 Identities=28% Similarity=0.478 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
.|+.++..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRF---LRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH---HhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 58999999999999 889999999999999999999999999999999998864
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=8e-15 Score=107.77 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=53.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 67 ARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 67 ~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+.+.|+.+++.+|+.+| ..|+||+..++.+||..|||+..||.+||+|+|.|.++..
T Consensus 13 ~k~k~~t~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASF---LNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 345589999999999999 8899999999999999999999999999999999877643
No 53
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=5.6e-15 Score=109.26 Aligned_cols=61 Identities=26% Similarity=0.393 Sum_probs=54.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
..++.|+.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEF---HFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 467788899999999999999 8999999999999999999999999999999999998765
No 54
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=102.16 Aligned_cols=61 Identities=31% Similarity=0.459 Sum_probs=56.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.+..|..|+.++..+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSY---LKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 346778899999999999999 7899999999999999999999999999999999988764
No 55
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.56 E-value=4.4e-15 Score=106.75 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=54.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHH-hhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhh
Q psy10105 64 DLAARRKNATRESTATLKAWLNE-HKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~-h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~ 125 (197)
+.++.|+.|+.+++..|+.+|.. +..++||+..++.+||..+||++.||.+||+|+|.+.+.
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 45667788999999999999932 223999999999999999999999999999999999764
No 56
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=5.5e-15 Score=108.95 Aligned_cols=63 Identities=24% Similarity=0.440 Sum_probs=57.7
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC---------------CChHHHhhhhhHHHHhhhhcc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITK---------------MTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tg---------------Ls~~QV~nWF~N~R~R~k~~~ 127 (197)
.+.++.|..|+..++.+|+.|| ..++||+..++..||..+| |+..||.+||+|+|+|.|+..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F---~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYF---NENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 3456778889999999999999 7799999999999999999 999999999999999999875
Q ss_pred c
Q psy10105 128 K 128 (197)
Q Consensus 128 ~ 128 (197)
+
T Consensus 82 ~ 82 (95)
T 2cuf_A 82 N 82 (95)
T ss_dssp H
T ss_pred h
Confidence 4
No 57
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.56 E-value=4.9e-15 Score=103.31 Aligned_cols=53 Identities=26% Similarity=0.494 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
..+++++..|+..| ..++||+..++.+||..|||+..||.+||+|+|.+.|+.
T Consensus 10 ~~~~~Ql~~LE~~F---~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 10 KKTKEQIAHLKASF---LQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp -CCHHHHHHHHHHH---HGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 35899999999999 999999999999999999999999999999999998853
No 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.55 E-value=7.4e-15 Score=116.61 Aligned_cols=63 Identities=32% Similarity=0.464 Sum_probs=57.2
Q ss_pred CCCCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhh
Q psy10105 60 GAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125 (197)
Q Consensus 60 g~~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~ 125 (197)
+...+.+++|+.|+..++.+|+.|| ..||||+..++..||..+||+..||.+||+|+|+|.|+
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYF---EKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3344567778899999999999999 77999999999999999999999999999999999875
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-14 Score=104.09 Aligned_cols=59 Identities=22% Similarity=0.393 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 67 ARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 67 ~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
.+++.|+.+++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.++..+
T Consensus 15 ~k~k~~t~~Ql~~Le~~F---~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSF---LKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp SCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccccCCHHHHHHHHHHH---ccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 455669999999999999 88999999999999999999999999999999999887653
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=107.67 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=54.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
..+++|+.|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAF---VRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCccCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 345677889999999999999 7899999999999999999999999999999999998763
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.52 E-value=5.7e-15 Score=117.02 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=63.2
Q ss_pred CCcchhhhhhhcCcccccccccccccccC---CCCCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC
Q psy10105 31 KVPALQSRRQLCGIDKQVIQVSNLTAVRY---GAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKM 107 (197)
Q Consensus 31 ~~p~~~~~~q~~~~~~~~~~~~~l~~~~~---g~~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgL 107 (197)
.+..+..++.. .+...+.+++...+... +...+.+++|+.|+..++.+|+.+| ..+|||+..++..||..+||
T Consensus 51 ls~knm~kLkP-lL~~wl~e~e~~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L 126 (146)
T 1au7_A 51 LSFKNACKLKA-ILSKWLEEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHF---GEHSKPSSQEIMRMAEELNL 126 (146)
T ss_dssp SBHHHHHHHHH-HHHHHHHHCCC----------------CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTC
T ss_pred CChHHHHhcch-HHHHHHHHhhcccCccCcccCCCCCCCCCCcCccHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCC
Confidence 33333433333 23455555554443322 2333456678889999999999999 88999999999999999999
Q ss_pred ChHHHhhhhhHHHHhhhh
Q psy10105 108 TLTQVSTWFANARRRLKK 125 (197)
Q Consensus 108 s~~QV~nWF~N~R~R~k~ 125 (197)
+..||.+||+|+|.|.|+
T Consensus 127 ~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 127 EKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred ChhhchhhhHhhhhhhhc
Confidence 999999999999999875
No 62
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.52 E-value=1.4e-14 Score=116.23 Aligned_cols=61 Identities=31% Similarity=0.324 Sum_probs=53.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+.+++|+.|+..++.+|+.|| ..+|||+..++..||..+||+..||.+||+|+|+|.|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIF---KENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 457788899999999999999 7789999999999999999999999999999999987653
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.51 E-value=5.3e-15 Score=119.42 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=61.2
Q ss_pred CCCcchhhhhhhcCccccccccccccccc-----CCCCCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q psy10105 30 TKVPALQSRRQLCGIDKQVIQVSNLTAVR-----YGAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAII 104 (197)
Q Consensus 30 ~~~p~~~~~~q~~~~~~~~~~~~~l~~~~-----~g~~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~ 104 (197)
..+..+..++..+ +.+.+.+++...+.+ .....+.+++|+.|+..++.+|+.+| ..++||+..++..||..
T Consensus 60 ~ls~kn~~klkPl-L~~wl~eae~~~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~LE~~F---~~~~yp~~~~r~~LA~~ 135 (164)
T 2xsd_C 60 QLSFKNMCKLKPL-LNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHF---LKCPKPSAHEITGLADS 135 (164)
T ss_dssp CSBHHHHHHHHHH-HHHHHHHHCC-----------------------CCHHHHHHHHHHH---HHCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHcchh-HHHHHhhhccccCCCcccccccccccCCCCceeccHHHHHHHHHHH---hcCCCCCHHHHHHHHHH
Confidence 3344444444433 344455555443322 11223456678889999999999999 88999999999999999
Q ss_pred hCCChHHHhhhhhHHHHhhhhcc
Q psy10105 105 TKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 105 tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+||+..||.+||+|+|+|.|+..
T Consensus 136 l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 136 LQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp HTCCHHHHHHHHHHHHHHHTBSC
T ss_pred HCCChhhhhhhhHHhhHHHhhcc
Confidence 99999999999999999988765
No 64
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=106.24 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=58.2
Q ss_pred CCCccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh---------------------CCChHHHhhhhhHH
Q psy10105 61 AGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIIT---------------------KMTLTQVSTWFANA 119 (197)
Q Consensus 61 ~~~~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~t---------------------gLs~~QV~nWF~N~ 119 (197)
...+.|+.|..|++.++.+|+++| ..++||+..++.+||..+ +|+..+|.+||+|+
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F---~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAY---DRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHH---cCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 344567788899999999999999 999999999999999999 79999999999999
Q ss_pred HHhhhhcc
Q psy10105 120 RRRLKKEN 127 (197)
Q Consensus 120 R~R~k~~~ 127 (197)
|+|.|+..
T Consensus 79 R~k~kr~~ 86 (102)
T 2da6_A 79 RKEEAFRQ 86 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988764
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=97.60 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhh
Q psy10105 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125 (197)
Q Consensus 68 rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~ 125 (197)
.+..+.++++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.+.
T Consensus 6 ~~~~p~~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYY---ALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 44567899999999999 89999999999999999999999999999999998664
No 66
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.50 E-value=2.2e-14 Score=103.27 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=53.7
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhh
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKK--NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~--nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~ 125 (197)
.+.++.|+.|+.+++..|+ -|.++.. ++||+..++.+||..+||++.||.+||+|+|.+.++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3456677889999999999 5744333 999999999999999999999999999999999764
No 67
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.49 E-value=4.3e-14 Score=113.34 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=53.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
+.+++|+.|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|+|.|+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSF---MENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 457788899999999999999 889999999999999999999999999999999998864
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=96.83 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.++..+...|+.+| ..++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 10 ~~t~~ql~~LE~~F---~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 10 HMSHTQVIELERKF---SHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred cCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 37889999999999 8899999999999999999999999999999999988654
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.43 E-value=2.2e-13 Score=101.79 Aligned_cols=61 Identities=23% Similarity=0.209 Sum_probs=52.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH------------------hC---CChHHHhhhhhHHHHh
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAII------------------TK---MTLTQVSTWFANARRR 122 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~------------------tg---Ls~~QV~nWF~N~R~R 122 (197)
+.++.|..|+..++.+|+.+| ..++||+..+|.+||.. +| |+..||.+||+|+|++
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F---~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAY---ERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -----CCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 456677889999999999999 89999999999999999 88 9999999999999998
Q ss_pred hhhcc
Q psy10105 123 LKKEN 127 (197)
Q Consensus 123 ~k~~~ 127 (197)
.+...
T Consensus 85 ~k~k~ 89 (99)
T 1lfb_A 85 EAFRH 89 (99)
T ss_dssp TSCCC
T ss_pred HHHhc
Confidence 76543
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=4e-13 Score=94.29 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=55.3
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 63 YDLAARRKNATRESTATLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 63 ~~~r~rR~~f~~~~~~~L~~wf~~h~~-nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
...++-|+.|+.++..+|+..| .. ++||+.+++..||.+|||++.+|..||+|+|--.+-.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f---~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFI---HDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHH---HHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCCccCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCC
Confidence 3566778899999999999999 77 9999999999999999999999999999999886643
No 71
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=1.6e-13 Score=96.72 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+.|+.++.++..+|+..|. ..++||+..++..||..+||++.||.+||+|+|.+.|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~--~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFV--SVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHH--HTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHH--hcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 34566688889999999993 5689999999999999999999999999999999988654
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.41 E-value=2.3e-13 Score=108.71 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=55.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
+.+++|+.|+..+..+|+.+| ..++||+..++..||..+||+..||.+||+|+|+|.|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMF---LKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTT---TTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHH---ccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 456678889999999999999 899999999999999999999999999999999998853
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=6.2e-13 Score=92.15 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 73 TRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 73 ~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+..+..+|+..|. ..+.||+..++.+||+++||++.||.+||+|+|.+.|+..
T Consensus 8 ~~~~~~~LE~~F~--~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 8 TAQPNAILEKVFT--AITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SSCHHHHHHHHHH--TTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred CchHHHHHHHHHH--HcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 3457899999993 3589999999999999999999999999999999988654
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.24 E-value=7.5e-12 Score=105.53 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=51.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC---------------------CChHHHhhhhhHHHHhh
Q psy10105 65 LAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITK---------------------MTLTQVSTWFANARRRL 123 (197)
Q Consensus 65 ~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tg---------------------Ls~~QV~nWF~N~R~R~ 123 (197)
.|+.|..|++.++.+|+.|| ..||||+..+|.+||..|| ||..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F---~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAY---DRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 45566679999999999999 7899999999999999998 89999999999999875
Q ss_pred h
Q psy10105 124 K 124 (197)
Q Consensus 124 k 124 (197)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.23 E-value=3.4e-12 Score=105.80 Aligned_cols=59 Identities=24% Similarity=0.223 Sum_probs=52.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhC---------------------CChHHHhhhhhHHHHh
Q psy10105 64 DLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITK---------------------MTLTQVSTWFANARRR 122 (197)
Q Consensus 64 ~~r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tg---------------------Ls~~QV~nWF~N~R~R 122 (197)
+.|+.|..|+..++.+|+.+| ..|+||+..+|.+||..++ ||..||.+||+|+|++
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F---~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAY---ERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHH---HHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 345667789999999999999 7789999999999999999 9999999999999999
Q ss_pred hhh
Q psy10105 123 LKK 125 (197)
Q Consensus 123 ~k~ 125 (197)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 763
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.21 E-value=7.8e-12 Score=109.97 Aligned_cols=55 Identities=27% Similarity=0.300 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhh
Q psy10105 67 ARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 124 (197)
Q Consensus 67 ~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k 124 (197)
+-+..|+..++..|++.| ..||||+..+|.+||++|||++.||++||+|||+|.|
T Consensus 367 ~~~~~~~~~q~~~Le~~f---~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVF---RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 345679999999999999 8899999999999999999999999999999999865
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3.8e-11 Score=84.48 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhh
Q psy10105 74 RESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 123 (197)
Q Consensus 74 ~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~ 123 (197)
++++.+|++.| ..|++|+.+++..||..+||+...|..||+|+|.+.
T Consensus 14 k~ql~~Lk~yF---~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYY---AMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 67899999999 999999999999999999999999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.90 E-value=0.00011 Score=45.41 Aligned_cols=18 Identities=39% Similarity=0.721 Sum_probs=15.7
Q ss_pred HHHhhhhhHHHHhhhhcc
Q psy10105 110 TQVSTWFANARRRLKKEN 127 (197)
Q Consensus 110 ~QV~nWF~N~R~R~k~~~ 127 (197)
.||.+||+|+|.|.|+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~ 18 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRV 18 (37)
T ss_dssp CCTTTTTTCSHHHHTSSH
T ss_pred CCceeccHHHHHHHHHHh
Confidence 489999999999988764
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.99 E-value=0.0075 Score=42.02 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHH
Q psy10105 73 TRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 73 ~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~ 119 (197)
++..+++|+++| ..+....+++-..|+.+++|+..||..||.-+
T Consensus 14 ~p~~~e~L~~Yy---~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 14 PPPDIQPLERYW---AAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCHHHHHHH---HHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcchHHHHHH---HHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 455678999999 66688899999999999999999999999753
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=86.82 E-value=1.8 Score=31.53 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhh
Q psy10105 67 ARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 124 (197)
Q Consensus 67 ~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k 124 (197)
++|+.|+.+.+..+-.++ ..++..+ ..++|+..|++.+.|.+|..+++....
T Consensus 3 ~~r~~~t~e~K~~iv~~~---~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEV---EENPDLR---KGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp CSSCCCCHHHHHHHHHHH---HHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred CcceeCCHHHHHHHHHHH---HHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 357789999987776776 3456554 236899999999999999988776543
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.45 E-value=1 Score=28.84 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHH
Q psy10105 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 68 rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R 120 (197)
+|+.|+.+.+..+...+. . .........++|+..|++..+|.+|....+
T Consensus 2 ~r~~ys~efK~~~~~~~~---~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYR---N-DNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCCHHHHHHHHHHHH---H-CTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCCcCCHHHHHHHHHHHH---c-CCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456788888765555441 1 222112357999999999999999965443
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=81.46 E-value=1.4 Score=30.44 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 72 ATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 72 f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
++...+.+|.-.|.+ .+ .-.+||+.+|++...|.++...+|+++++..
T Consensus 38 L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 889999999876522 22 2468999999999999999999999998764
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=79.45 E-value=2.9 Score=24.25 Aligned_cols=43 Identities=7% Similarity=-0.000 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhH
Q psy10105 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 68 rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N 118 (197)
|.+.++.+.+..+...+ .. .+ ...+||+.+|++...|..|...
T Consensus 2 R~~~l~~~~~~~i~~~~---~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 2 RGSALSDTERAQLDVMK---LL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CSCCCCHHHHHHHHHHH---HT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHH---Hc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 34457777765444444 22 22 2568999999999999999754
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=78.46 E-value=2.1 Score=27.40 Aligned_cols=49 Identities=14% Similarity=0.052 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+++..+.+|...|. . .+ .-.++|..+|++...|.++...++.++++..
T Consensus 15 ~L~~~~r~il~l~~~---~-g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQL---L-GL----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHT---S-CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHH---c-CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 388899999987662 2 22 2368999999999999999999999988654
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=78.10 E-value=3.3 Score=30.22 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+++..+.+|. .|. ..| .-.+||+.+|++...|.++...+|+++++..
T Consensus 109 ~L~~~~r~v~~-~~~----~g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI----RGY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHT----TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH----cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 37888888888 442 232 2467999999999999999999999998765
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=77.62 E-value=8.6 Score=26.30 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=32.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHH
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 121 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~ 121 (197)
++.++.|+.+.+...-..+. . . . -..++|+.+|++...|.+|....+.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~-g--~----s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-D-G--E----SKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-H-T--C----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-C-C--C----CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 34566788887654444442 1 1 1 2568999999999999999865443
No 87
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=74.82 E-value=7.8 Score=26.99 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+++..+.+|.-.+ .... -.+||..+|++...|.++..+.+++++..+
T Consensus 27 ~Lt~~e~~vl~l~~---~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 27 GLTDQERTLLGLLS---EGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp CCCHHHHHHHHHHH---TTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHH---cCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 48999999998754 2222 378999999999999999999999988654
No 88
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=70.99 E-value=8.8 Score=26.25 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
.+++..+.+|.-++ .... -.+||..+|++...|.++..+.+++++..
T Consensus 29 ~Lt~~e~~vl~l~~---~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 29 MLTEREMEILLLIA---KGYS------NQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GCCSHHHHHHHHHH---TTCC------TTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHH---cCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 48999999997743 2222 24799999999999999999999998754
No 89
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=70.91 E-value=4.2 Score=26.70 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhh-hcc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK-KEN 127 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k-~~~ 127 (197)
.+++..+.+|...|.-.-...+ .-.+||..+|+|...|.++...++.+++ ...
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~ 63 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHES 63 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence 4899999999887720000232 2358999999999999999999999988 443
No 90
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=70.71 E-value=4.8 Score=27.54 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+++..+.+|...|.-.....+ .-.+||..+|+|...|.++...++++++...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3889999999887720000222 2467999999999999999999999988654
No 91
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=69.15 E-value=3.5 Score=32.20 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+++..+.+|.-.|. . .+ .-.+||+.+|++...|..+...+|.++++..
T Consensus 187 ~L~~~~r~vl~l~~~---~-g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY---E-EL----PAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHT---S-CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh---c-CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 389999999987762 2 22 2367999999999999999999999998765
No 92
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=68.68 E-value=6 Score=28.89 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 72 ATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 72 f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+++..+.++.-.|.+ . + .-.++|..+|+|...|.+|...+|.+.+...
T Consensus 23 L~~~~r~vl~l~y~~--g--~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 23 LTDKQMNYIELYYAD--D--Y----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp SCHHHHHHHHHHHHT--C--C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--C--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 788899998876532 2 2 2368999999999999999999999988654
No 93
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=67.59 E-value=7 Score=25.55 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 72 ATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 72 f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
+++..+.+|.-++ . .+ .-.++|..+|++...|.++....+.+++..
T Consensus 17 L~~~e~~vl~l~~---~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 17 LSERERQVLSAVV---A--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHHHT---T--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHH---c--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 6778888886643 2 22 235899999999999999999999998754
No 94
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=67.51 E-value=5.8 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
.+++..+.+|.-++ . .+ .-.+||+.+|++...|.++..+.+++++..
T Consensus 21 ~Lt~~e~~vl~l~~---~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 21 QLTPRERDILKLIA---Q--GL----PNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GSCHHHHHHHHHHT---T--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCHHHHHHHHHHH---c--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 48999999998743 1 22 346899999999999999999999997754
No 95
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=66.91 E-value=12 Score=26.67 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
..|++..+.+|.-++ .... -.+||..+|++...|.++..+.++++.-.
T Consensus 33 ~~Lt~re~~Vl~l~~---~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA---EGFL------VTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSCCHHHHHHHHHHH---HTCC------HHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHH---cCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 359999999996654 2222 27899999999999999999999887643
No 96
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=66.71 E-value=5 Score=30.41 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 72 ATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 72 f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+++..+.+|.-.|. . .++ -.+||..+|++...|.++...+|+++++..
T Consensus 141 L~~~~r~vl~l~~~---~-g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLREL---D-GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHT---T-CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHH---c-CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 78888888876552 1 221 357999999999999999999999998765
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=65.85 E-value=6.8 Score=25.25 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+++..+.+|.-.|.-+....+ .-.+||..+|+|...|.++...++++++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4788889988776510001232 2367999999999999999999999988654
No 98
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=65.71 E-value=12 Score=25.68 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHhCCChHHHhhhhhHH
Q psy10105 69 RKNATRESTATLKAWLNEHKKN-PYPTKGEKIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 69 R~~f~~~~~~~L~~wf~~h~~n-PYPs~~ek~~LA~~tgLs~~QV~nWF~N~ 119 (197)
|+.|+.+.+...-..+ ... .+ -...+|+.+|++...|.+|....
T Consensus 3 r~~ys~e~k~~~v~~~---~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALY---ENSDGA----SLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCHHHHHHHHHHH---TTGGGS----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---HHcCCC----hHHHHHHHHCcCHHHHHHHHHHH
Confidence 4568888765444444 221 21 36789999999999999997543
No 99
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=65.37 E-value=6.6 Score=23.04 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhH
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N 118 (197)
+.++.+....+...+ ... . ...+||+.+|++..-|..|+..
T Consensus 4 ~~~~~~~~~~i~~l~---~~g-~----s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 4 RAINKHEQEQISRLL---EKG-H----PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CSSCTTHHHHHHHHH---HTT-C----CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHH---HcC-C----CHHHHHHHHCCCHHHHHHHHHH
Confidence 345555544444444 222 2 2568999999999999999854
No 100
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=63.70 E-value=8.8 Score=24.59 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
..+++....+|..++ ..+ .-.++|..+|++...|..++...+.+.+..
T Consensus 10 ~~L~~~e~~il~~~~-----~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 10 PLLTKREREVFELLV-----QDK----TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCHHHHHHHHHHT-----TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHH-----cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 358999999997743 122 236799999999999999999999887643
No 101
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=62.73 E-value=3.9 Score=30.82 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 72 ATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 72 f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
+++..+.+|.-.|.+ ..+| .+||..+|++...|.++...+|+++++.
T Consensus 136 L~~~~r~vl~l~~~~--g~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFG--DLTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHS--CCSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 778888887765532 2232 3689999999999999999999998864
No 102
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=62.49 E-value=6.8 Score=28.43 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 72 ATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 72 f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
+++..+.++.-.|. . .+ .-.++|..+|++...|.++...+|.+++...
T Consensus 26 L~~~~r~vl~l~~~---~-g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYL---E-DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHT---S-CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---c-CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 78889999887652 1 22 2368999999999999999999999988654
No 103
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=61.57 E-value=8.1 Score=24.01 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=25.1
Q ss_pred HHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 99 IMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 99 ~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
.++|..+|++...|.++..+.+.+.+..
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 5899999999999999999999987754
No 104
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=60.73 E-value=20 Score=24.57 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHH
Q psy10105 76 STATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 76 ~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~ 119 (197)
.++.+.+|+.+|..++-++ -.+||..+|++...+...|+-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4566778888887775455 4568899999999998887654
No 105
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=58.47 E-value=24 Score=24.56 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHhCCChHHHhhhhhHHH
Q psy10105 69 RKNATRESTATLKAWLNEHKKNPYPTK-GEKIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 69 R~~f~~~~~~~L~~wf~~h~~nPYPs~-~ek~~LA~~tgLs~~QV~nWF~N~R 120 (197)
++.|+.+.+...-..+.++.. -|++. .....+|..+|++..+|.+|..-.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~-~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQG-EYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccc-ccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456888876544343322210 12332 3567899999999999999976543
No 106
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=57.91 E-value=5.7 Score=26.22 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998754
No 107
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=57.52 E-value=15 Score=27.41 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhccc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 128 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~~ 128 (197)
.+++..+.+|.-.|. ..+ .-.+||..+|++...|.+....+|.++++...
T Consensus 93 ~Lp~~~r~vl~L~~~----~g~----s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTAM----EGF----SPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTSS----SCC----CHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHHH----cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 488888888865431 122 23689999999999999999999999997653
No 108
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=55.48 E-value=5.3 Score=24.74 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999998764
No 109
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=54.94 E-value=5.6 Score=24.77 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 4679999999999999998764
No 110
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=53.50 E-value=5.7 Score=25.04 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999987643
No 111
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=52.77 E-value=26 Score=26.16 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=38.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH----Hh--CCChHHHhhhhhHHHH
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAI----IT--KMTLTQVSTWFANARR 121 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~----~t--gLs~~QV~nWF~N~R~ 121 (197)
+++|+.++-+++..|..++. ..||-.+.. .||+ +. +++.+.|+.|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~--~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFF--QLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHH--SSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHH--HhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 56788999999998888861 356655543 4555 67 7899999999987554
No 112
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=50.78 E-value=7.2 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~ 47 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNK 47 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999998764
No 113
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=50.38 E-value=7.2 Score=24.89 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSE 42 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999998764
No 114
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=49.46 E-value=7.6 Score=24.92 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCC
Confidence 4679999999999999998764
No 115
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=49.34 E-value=59 Score=23.59 Aligned_cols=45 Identities=4% Similarity=-0.055 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHh
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 122 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R 122 (197)
+.++.+.+..+-..+ .. .+ + ..++|+.+|++...|..|+...+..
T Consensus 31 ~~~s~e~r~~iv~~~---~~-G~-s---~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 31 RPLPDVVRQRIVELA---HQ-GV-R---PCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp SCCCHHHHHHHHHHH---HT-TC-C---HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---Hc-CC-C---HHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 458888776655555 22 22 2 4678999999999999999876543
No 116
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=48.92 E-value=10 Score=23.16 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChHHHhhhhhH
Q psy10105 98 KIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N 118 (197)
..+||+.+|++...|..|+..
T Consensus 34 ~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHh
Confidence 568999999999999999753
No 117
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=48.71 E-value=7.8 Score=24.21 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~ 38 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGK 38 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999997654
No 118
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=48.14 E-value=11 Score=24.85 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHH
Q psy10105 75 ESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 75 ~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R 120 (197)
.....|+....+ ..+ + ..+||+.+|++...|+.|..+.+
T Consensus 12 ~~~~~l~~~r~~---~gl-s---q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 12 QLANAMKLVRQQ---NGW-T---QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHHHHH---TTC-C---HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHH---cCC-C---HHHHHHHhCCCHHHHHHHHcCCC
Confidence 345566666522 222 2 46799999999999999998743
No 119
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=47.42 E-value=40 Score=24.00 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=39.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCC-CCHHHH----HHHHHHhCCChHHH-hhhhhHHHHhh
Q psy10105 66 AARRKNATRESTATLKAWLNEHKKNPY-PTKGEK----IMLAIITKMTLTQV-STWFANARRRL 123 (197)
Q Consensus 66 r~rR~~f~~~~~~~L~~wf~~h~~nPY-Ps~~ek----~~LA~~tgLs~~QV-~nWF~N~R~R~ 123 (197)
++.++....+.-..|-.|+.+...... ++.... ..|+...|++.-.+ .+|+.+..+|.
T Consensus 67 kr~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 67 KTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 444566778889999999987654333 565444 45667777764343 57999888774
No 120
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=47.14 E-value=7.7 Score=25.54 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.2
Q ss_pred HHHHHHhCCChHHHhhhhhHHH
Q psy10105 99 IMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 99 ~~LA~~tgLs~~QV~nWF~N~R 120 (197)
.+||+.+|++...|+.|..+.+
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHcCCC
Confidence 5799999999999999987653
No 121
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=47.13 E-value=32 Score=24.40 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
.+++..+.++.-.|......++ .-.+||..+|+|...|.+....+++++|...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3788899988877731111232 3468999999999999999999999998764
No 122
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=47.04 E-value=8 Score=24.84 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999998764
No 123
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=47.03 E-value=8.5 Score=24.73 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987654
No 124
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=46.85 E-value=31 Score=27.91 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhcc
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~~ 127 (197)
..+++..+.+|.-.+ ..-. -.+||..+|++..-|.+...++|++++..+
T Consensus 196 ~~L~~~erevl~L~~---~G~s------~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR---KGLS------SKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH---TTCC------HHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH---cCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 469999999998764 2222 368999999999999999999999987543
No 125
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=46.79 E-value=9.6 Score=25.42 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=20.3
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..+.+
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999988765
No 126
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=46.01 E-value=10 Score=24.24 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChHHHhhhh
Q psy10105 98 KIMLAIITKMTLTQVSTWF 116 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF 116 (197)
..+||+.+|++..-|+.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3679999999999999997
No 127
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=45.76 E-value=9.4 Score=24.16 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4679999999999999998764
No 128
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=44.39 E-value=31 Score=23.78 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhh
Q psy10105 69 RKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125 (197)
Q Consensus 69 R~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~ 125 (197)
...|++..+.+|.-.+ ..+ .-.+||..+|++...|.+...+.++++..
T Consensus 27 ~~~Lt~rE~~Vl~l~~-----~G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-----KGF----TNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp --CCCHHHHHHHHHHH-----TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHH-----cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3459999999997654 222 24789999999999999999999888753
No 129
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=43.26 E-value=11 Score=25.40 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46899999999999999988753
No 130
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=43.25 E-value=17 Score=24.57 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHhhhhhH
Q psy10105 98 KIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N 118 (197)
...||+.+|+|..-|+.|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999865
No 131
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=42.88 E-value=11 Score=25.70 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..+.+
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46799999999999999987743
No 132
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=41.77 E-value=5.5 Score=30.96 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhh
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 124 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k 124 (197)
.+++..+.+|.-.|.+. -.-.+||+.+|++...|.+++..+|+++|
T Consensus 198 ~L~~~~r~vl~l~~~~g--------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD--------QTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC--------CCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 47888888887655322 23468999999999999999998888764
No 133
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=40.86 E-value=13 Score=24.24 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999987653
No 134
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=40.53 E-value=11 Score=24.43 Aligned_cols=22 Identities=9% Similarity=-0.071 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 3579999999999999997764
No 135
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=39.50 E-value=14 Score=24.71 Aligned_cols=20 Identities=10% Similarity=-0.036 Sum_probs=17.6
Q ss_pred HHHHHHhCCChHHHhhhhhH
Q psy10105 99 IMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 99 ~~LA~~tgLs~~QV~nWF~N 118 (197)
.+||+.+|++..-|++|..+
T Consensus 26 ~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 56999999999999999664
No 136
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=38.14 E-value=70 Score=22.54 Aligned_cols=45 Identities=7% Similarity=-0.013 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHH
Q psy10105 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 68 rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R 120 (197)
|.+.++.+.+..+...+ .. .+ -..++|+.+|++...|..|+...+
T Consensus 3 r~~~~s~~~r~~i~~~~---~~-G~----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 3 RGSALSDTERAQLDVMK---LL-NV----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CSCCCCHHHHHHHHHHH---HT-TC----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred CcccCCHHHHHHHHHHH---Hc-CC----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 34567888776665555 22 22 246889999999999999987543
No 137
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=37.62 E-value=14 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999998764
No 138
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=37.59 E-value=14 Score=24.18 Aligned_cols=21 Identities=19% Similarity=-0.154 Sum_probs=18.6
Q ss_pred HHHHHHhCCChHHHhhhhhHH
Q psy10105 99 IMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 99 ~~LA~~tgLs~~QV~nWF~N~ 119 (197)
.+||+.+|++...|+.|-.+.
T Consensus 31 ~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 579999999999999997764
No 139
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=35.54 E-value=56 Score=22.38 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCC-------ChHHHhhhhhH
Q psy10105 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKM-------TLTQVSTWFAN 118 (197)
Q Consensus 68 rR~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgL-------s~~QV~nWF~N 118 (197)
+...++.+....+.+++ ..+|.-+..+......+.|+ +...|..|+..
T Consensus 72 ~~~~l~~~~~~~i~~~~---~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 72 KPRIATPEIENRIEEYK---RSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CCCSSCSTHHHHHHHTT---TTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CCCcCCHHHHHHHHHHH---HhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 34457777777787887 66776676654443333374 88899999753
No 140
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=35.41 E-value=18 Score=23.77 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=19.8
Q ss_pred HHHHHHhCCChHHHhhhhhHHH
Q psy10105 99 IMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 99 ~~LA~~tgLs~~QV~nWF~N~R 120 (197)
.+||+.+|++..-|+.++.+.+
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998765
No 141
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=34.98 E-value=17 Score=24.61 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|++|..+.+
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 36799999999999999988754
No 142
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=34.90 E-value=16 Score=25.25 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999998874
No 143
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=34.90 E-value=47 Score=22.84 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHH
Q psy10105 76 STATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 76 ~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~ 119 (197)
....+.+|+.+|...+ ++ -..||+..|++...+...|+..
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 3456678888887766 44 4568889999999988887754
No 144
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=34.25 E-value=17 Score=22.76 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=18.8
Q ss_pred HHHHHHHhC--CChHHHhhhhhHH
Q psy10105 98 KIMLAIITK--MTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tg--Ls~~QV~nWF~N~ 119 (197)
..+||+.+| ++...|++|..+.
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCC
Confidence 367999999 9999999997764
No 145
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=34.14 E-value=19 Score=24.12 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHH
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R 120 (197)
.+.......|+.+- ....+ + ..+||+.+|++...|+.|..+.+
T Consensus 9 ~~~~~~~~~l~~~r---~~~gl-s---q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 9 RVTLEVGKVIQQGR---QSKGL-T---QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp CCCCHHHHHHHHHH---HTTTC-C---HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHH---HHcCC-C---HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34555667777765 22222 2 35799999999999999987653
No 146
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=33.61 E-value=28 Score=22.82 Aligned_cols=21 Identities=19% Similarity=-0.028 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChHHHhhhhhH
Q psy10105 98 KIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N 118 (197)
..+||+.+|++...|+.|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 357999999999999999876
No 147
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=33.59 E-value=46 Score=26.34 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
..+++..+++|. |+. ..+ .-.+||+.+|++..-|.+...+.++|+.-.
T Consensus 174 ~~Lt~~e~~vl~-~~~----~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 174 QMLSPREMLCLV-WAS----KGK----TASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp GSCCHHHHHHHH-HHH----TTC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHH-HHH----cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 358888888884 442 122 236799999999999999999999997644
No 148
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=33.15 E-value=17 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|-.+.
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 3579999999999999997665
No 149
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=32.21 E-value=25 Score=22.82 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHH
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~ 119 (197)
.++.+..+.++.-. .. | ..+||+.+|++...|+.|-.+.
T Consensus 10 ~~~g~~lr~~R~~~------gl-t---q~elA~~~gvs~~tis~~E~G~ 48 (73)
T 3fmy_A 10 TVAPEFIVKVRKKL------SL-T---QKEASEIFGGGVNAFSRYEKGN 48 (73)
T ss_dssp CCCHHHHHHHHHHT------TC-C---HHHHHHHHCSCTTHHHHHHTTS
T ss_pred CCCHHHHHHHHHHc------CC-C---HHHHHHHhCcCHHHHHHHHcCC
Confidence 46666666665543 11 2 3679999999999999996654
No 150
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=31.81 E-value=19 Score=23.73 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=19.4
Q ss_pred HHHHHHhCCChHHHhhhhhHHH
Q psy10105 99 IMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 99 ~~LA~~tgLs~~QV~nWF~N~R 120 (197)
.+||+.+|++...|+.|..+.+
T Consensus 31 ~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 31 VTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4899999999999999987654
No 151
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.70 E-value=39 Score=23.25 Aligned_cols=45 Identities=4% Similarity=0.011 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHh
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 122 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R 122 (197)
+.++.+.+..+-..+. ..+ + ..++|+.+|++...|..|+...+..
T Consensus 16 ~~~s~~~r~~i~~~~~----~g~-s---~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA----DGI-R---PCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp SCCCHHHHHHHHHHHH----TTC-C---HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH----cCC-C---HHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 3578777666555552 222 2 4678999999999999999876543
No 152
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.42 E-value=82 Score=20.21 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhH
Q psy10105 78 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 78 ~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N 118 (197)
..+.+|. ...-.|+.+.-..||+.+|++...+..|+..
T Consensus 40 ~~is~~e---~g~~~~~~~~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 40 SAVAALF---NGINALNAYNAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp HHHHHHH---TTSSCCCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHHHHH---cCCCCCCHHHHHHHHHHhCCCHHHHhHHHHh
Confidence 4456666 3445689999999999999999999888754
No 153
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=30.73 E-value=90 Score=23.20 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHh
Q psy10105 72 ATRESTATLKAWLNEH-KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 122 (197)
Q Consensus 72 f~~~~~~~L~~wf~~h-~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R 122 (197)
++....-+|-..+..+ ..+++|+.+ .||+.+|++..+|...+.+--.+
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 4555555554444322 347999986 59999999999999998887766
No 154
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=30.72 E-value=24 Score=22.11 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChHHHhhhhh
Q psy10105 98 KIMLAIITKMTLTQVSTWFA 117 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~ 117 (197)
...+|+.+|++...|+.|..
T Consensus 16 ~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 35799999999999999983
No 155
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.35 E-value=1.5e+02 Score=21.63 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHh-------CCChHHHhhhhhHHH
Q psy10105 69 RKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIIT-------KMTLTQVSTWFANAR 120 (197)
Q Consensus 69 R~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~t-------gLs~~QV~nWF~N~R 120 (197)
+..++.+....|.+++ ..+|--+..+......+. .++...|..|+...+
T Consensus 81 ~~~~~~~~~~~I~~~~---~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~ 136 (159)
T 2k27_A 81 PKVATPKVVEKIGDYK---RQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV 136 (159)
T ss_dssp CCCCCTTHHHHHHHHH---HHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHH---HHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHh
Confidence 3457777788888887 445656665543322222 489999999986543
No 156
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=29.82 E-value=82 Score=24.19 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=27.6
Q ss_pred CCHHHHHHH---HHHHHHhhCCCC-CCHHHHHHHHHHhCCC-hHHHhhhhhH
Q psy10105 72 ATRESTATL---KAWLNEHKKNPY-PTKGEKIMLAIITKMT-LTQVSTWFAN 118 (197)
Q Consensus 72 f~~~~~~~L---~~wf~~h~~nPY-Ps~~ek~~LA~~tgLs-~~QV~nWF~N 118 (197)
++..+..++ +... ....+ |+ ..+||+.+|++ ...|++|+..
T Consensus 4 lt~~q~~i~~~i~~~~---~~~g~~ps---~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 4 LTARQQEVFDLIRDHI---SQTGMPPT---RAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCHHHHHHHHHHHHHH---HHHSSCCC---HHHHHHHTTCSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH---HHhCCCcc---HHHHHHHhCCCChHHHHHHHHH
Confidence 566665554 3333 33355 35 35699999999 9999999763
No 157
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=28.70 E-value=25 Score=24.18 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|..+.
T Consensus 34 q~~lA~~~gis~~~is~~e~g~ 55 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQ 55 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999998765
No 158
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=28.25 E-value=23 Score=24.37 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHH
Q psy10105 76 STATLKAWLNEHKKNPYPTKGEK 98 (197)
Q Consensus 76 ~~~~L~~wf~~h~~nPYPs~~ek 98 (197)
++.+++-.| ..||||+++-.
T Consensus 17 ~vRiIkiLy---QSNP~P~p~GT 36 (72)
T 3lph_A 17 AVRLIKFLY---QSNPPPNPEGT 36 (72)
T ss_dssp HHHHHHHHH---HTCCCCCCCSC
T ss_pred HHHHHHHHH---ccCCCCCCCCc
Confidence 456666666 78999997543
No 159
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=28.19 E-value=76 Score=21.75 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHH
Q psy10105 76 STATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 76 ~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~ 119 (197)
....+.+|+.+|...+. .-..||..+|++...+...|...
T Consensus 6 ~i~~~~~~i~~~~~~~~----~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGM----SLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTSCC----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 34556678877766552 35678888999999988887654
No 160
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=27.72 E-value=28 Score=24.27 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|-.+.+
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999988754
No 161
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=27.60 E-value=36 Score=23.25 Aligned_cols=21 Identities=19% Similarity=-0.028 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHhhhhhH
Q psy10105 98 KIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N 118 (197)
...||+.+|++...|+.|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 367999999999999999987
No 162
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=27.33 E-value=25 Score=23.44 Aligned_cols=22 Identities=18% Similarity=-0.052 Sum_probs=18.9
Q ss_pred HHHHHHhCCChHHHhhhhhHHH
Q psy10105 99 IMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 99 ~~LA~~tgLs~~QV~nWF~N~R 120 (197)
.+||+.+|++...|+.|-.+.+
T Consensus 31 ~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 31 ADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHCCCC
Confidence 5799999999999999976654
No 163
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=27.32 E-value=25 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..+.+
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987753
No 164
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=26.89 E-value=24 Score=25.11 Aligned_cols=23 Identities=0% Similarity=0.039 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||..+|++...|+.|..+.+
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 36799999999999999988763
No 165
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=26.80 E-value=1.5e+02 Score=20.17 Aligned_cols=50 Identities=8% Similarity=0.015 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh--hCCCCCCHHHHHHHHHHhC--CChHHHhhhhh
Q psy10105 68 RRKNATRESTATLKAWLNEH--KKNPYPTKGEKIMLAIITK--MTLTQVSTWFA 117 (197)
Q Consensus 68 rR~~f~~~~~~~L~~wf~~h--~~nPYPs~~ek~~LA~~tg--Ls~~QV~nWF~ 117 (197)
....++++....|++.|... ..+.|.+.+|-..+.+..| ++..+|..+|.
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44568999999999999754 4579999999999999887 56667777764
No 166
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=26.61 E-value=39 Score=26.07 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCChHHHhhhhhHHHHhh
Q psy10105 96 GEKIMLAIITKMTLTQVSTWFANARRRL 123 (197)
Q Consensus 96 ~ek~~LA~~tgLs~~QV~nWF~N~R~R~ 123 (197)
.||..|....||+++|+.++|.-+|+..
T Consensus 11 ~~kqk~~~~yg~~e~q~~~~~~~a~~~~ 38 (159)
T 1c05_A 11 QEKQKLRHMYGVNERQFRKTFEEAGKMP 38 (159)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcc
Confidence 5888999999999999999999887654
No 167
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=26.44 E-value=49 Score=23.34 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhH
Q psy10105 74 RESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 74 ~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N 118 (197)
...+..+.+|+.+|...+. .-..||..+|++...+...|..
T Consensus 6 ~~~~~~~~~~i~~~~~~~~----~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 6 PNMRTRVCTVINNNIAHEW----TLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CCHHHHHHHHHHTSTTSCC----CHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 4456667788877765542 3567899999999999888753
No 168
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=26.22 E-value=1.4e+02 Score=20.22 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHH
Q psy10105 77 TATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 77 ~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~ 119 (197)
...+.+|+.+|..+.-++ -..||+.+|++...+..-|...
T Consensus 5 i~~~~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFD---IASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCC---HHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 344567887776633234 4568999999999888877653
No 169
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=25.93 E-value=65 Score=25.40 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 69 RKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 69 R~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
...+++..+.+|. |+ . ..+ .-.+||..+|++..-|.+...|.++|+.-.
T Consensus 171 ~~~Lt~~e~~vl~-~~---~-~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 171 AAWLDPKEATYLR-WI---A-VGK----TMEEIADVEGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp CCCCCHHHHHHHH-HH---T-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHH-HH---H-cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 3458999999984 44 2 222 246899999999999999999999997643
No 170
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=25.62 E-value=34 Score=22.47 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+..|++..-|+.++.|.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 5789999999999999998765
No 171
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=25.31 E-value=68 Score=22.23 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHH
Q psy10105 76 STATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 76 ~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~ 119 (197)
....+.+|+.+|...+ ++ -..||..+|++...+...|.-.
T Consensus 8 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEP-LS---TDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSC-CC---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCC-CC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4555668887776666 44 4678889999999988887654
No 172
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.25 E-value=90 Score=20.41 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHh--hCCCCCCHHHHHHHHHHhCCChHHHhhhhhH
Q psy10105 71 NATRESTATLKAWLNEH--KKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h--~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N 118 (197)
.++.+....|+..|... ..+.+.+.+|-..+....|++..+|..+|..
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 47888889999998654 3467899999999999999999888887753
No 173
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=24.99 E-value=43 Score=23.53 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.6
Q ss_pred HHHHHHHhCCChHHHhhhh
Q psy10105 98 KIMLAIITKMTLTQVSTWF 116 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF 116 (197)
-..+|+..|++.++|+.|=
T Consensus 27 Q~~vAe~~GvdeStISR~k 45 (83)
T 1zs4_A 27 TEKTAEAVGVDKSQISRWK 45 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred hHHHHHHhCCCHHHHhhhh
Confidence 3578999999999999983
No 174
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=24.71 E-value=31 Score=23.61 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=18.4
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|-.+.
T Consensus 46 q~elA~~lgvs~~~is~~E~G~ 67 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGR 67 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCC
Confidence 3579999999999999996553
No 175
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=24.56 E-value=28 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHhCCChHHHhhhhhHHH
Q psy10105 71 NATRESTATLKAWLNEHK--KNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~--~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R 120 (197)
.+.......|+.+. . ... -+ ..+||+.+|++...|+.|-.+.+
T Consensus 30 ~~~~~~g~~lk~~R---~~~~~g-ls---q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 30 TVGKEVGKAIEQGR---QKFEPT-MT---QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp CCCHHHHHHHHHHH---TTSSSC-CC---HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHH---HHHHcC-CC---HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45566677777765 3 222 23 35699999999999999987644
No 176
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=24.38 E-value=34 Score=24.22 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|-.+.+
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 35799999999999999987753
No 177
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=23.92 E-value=29 Score=24.41 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHH
Q psy10105 74 RESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 74 ~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R 120 (197)
......|+.+- ....+ + ..+||+.+|++...|+.|-.+.+
T Consensus 20 ~~~g~~lr~~R---~~~gl-t---q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 20 AVLAYNMRLFR---VNKGW-S---QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHHHH---HHTTC-C---HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHHHH---HHcCC-C---HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34455565554 22222 3 35799999999999999977653
No 178
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=23.40 E-value=38 Score=24.96 Aligned_cols=40 Identities=8% Similarity=-0.059 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHH
Q psy10105 77 TATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 121 (197)
Q Consensus 77 ~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~ 121 (197)
.+.-...| ..+.| . -.-..||++.|++..-|-+.|.|+-.
T Consensus 21 l~aA~~lf---~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 21 LAAAVRVF---SEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHH---HHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHH---HhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 33334555 56677 5 68889999999999999999988653
No 179
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=23.10 E-value=1e+02 Score=27.24 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhh
Q psy10105 71 NATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 124 (197)
Q Consensus 71 ~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k 124 (197)
.+++..+.+|.-.|. .... ..-.-.+||..+|+|...|..+...+++++|
T Consensus 360 ~L~~rer~Vl~lr~~--L~~~--e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKG--LIDG--REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHH--TTCC-------CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhc--cCCC--CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 388888888877663 1111 1245578999999999999999999999998
No 180
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=22.61 E-value=33 Score=23.96 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHH
Q psy10105 73 TRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 73 ~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R 120 (197)
.......|+.+-.++ .+ + ..+||+.+|++...|+.|-.+.+
T Consensus 26 ~~~~g~~l~~~R~~~---gl-s---q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 26 REALGAALRSFRADK---GV-T---LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHHHHHHHHH---TC-C---HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHc---CC-C---HHHHHHHHCcCHHHHHHHHCCCC
Confidence 334455666655322 21 2 35899999999999999987654
No 181
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=22.56 E-value=35 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..++|
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987764
No 182
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=22.31 E-value=38 Score=22.95 Aligned_cols=22 Identities=5% Similarity=0.155 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChHH----HhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQ----VSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~Q----V~nWF~N~ 119 (197)
..+||..+|++... |+.|-.+.
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~ 42 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGK 42 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCC
Confidence 46899999999999 99998775
No 183
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=22.27 E-value=38 Score=23.46 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChHHHhhhhhHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANA 119 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~ 119 (197)
..+||+.+|++...|+.|-.+.
T Consensus 44 q~elA~~~gis~~~is~iE~G~ 65 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNS 65 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4679999999999999997765
No 184
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=21.81 E-value=1.2e+02 Score=22.02 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=31.4
Q ss_pred CCHH---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhH
Q psy10105 72 ATRE---STATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 72 f~~~---~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N 118 (197)
++.+ +.+.||++|.+|...| + -+.|++.+|.+.+.+..=|..
T Consensus 42 LTe~HW~vI~flR~yY~e~~~~P--~---iR~l~K~~~~~~k~Ly~LFP~ 86 (105)
T 3or1_C 42 GSADHQKIIDFLQDYYKANGIAP--M---VRILSKNTGFALKEIYELFPS 86 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCC--C---HHHHHHHHCCCHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCC--c---HHHHHHHHCcCHHHHHHHCCC
Confidence 6665 5778899998777766 2 568999999987777666643
No 185
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=21.35 E-value=45 Score=23.93 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCChHHHhhhhh
Q psy10105 97 EKIMLAIITKMTLTQVSTWFA 117 (197)
Q Consensus 97 ek~~LA~~tgLs~~QV~nWF~ 117 (197)
--..+|+..|++.++|+.|=.
T Consensus 25 gq~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 25 GTEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp CHHHHHHHHTCCTTTHHHHHH
T ss_pred hHHHHHHHhCCCHHHHHHHHh
Confidence 346899999999999999833
No 186
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=20.81 E-value=40 Score=25.11 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHhhhhhHHH
Q psy10105 98 KIMLAIITKMTLTQVSTWFANAR 120 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N~R 120 (197)
..+||+.+|++...|+.|..+.+
T Consensus 84 q~elA~~lGis~s~is~~E~G~~ 106 (141)
T 3kxa_A 84 QSELATAAGLPQPYLSRIENSKQ 106 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987653
No 187
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=20.72 E-value=1e+02 Score=25.08 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhCCChHHHhhhhhHHHHhhhhc
Q psy10105 70 KNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126 (197)
Q Consensus 70 ~~f~~~~~~~L~~wf~~h~~nPYPs~~ek~~LA~~tgLs~~QV~nWF~N~R~R~k~~ 126 (197)
..|++..+++|.-.. ..+ .-.+||+.+|+|..-|.+...|.++|+...
T Consensus 196 ~~Lt~re~~vl~~~~-----~G~----s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 196 MPLSQREYDIFHWMS-----RGK----TNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCCHHHHHHHHHHH-----TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHH-----cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 458888888885432 121 246899999999999999999999997644
No 188
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=20.02 E-value=69 Score=20.46 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.0
Q ss_pred HHHHHHHhCCChHHHhhhhhH
Q psy10105 98 KIMLAIITKMTLTQVSTWFAN 118 (197)
Q Consensus 98 k~~LA~~tgLs~~QV~nWF~N 118 (197)
..++|+.+|++..-|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467999999999999999654
Done!