RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10105
(197 letters)
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 73.3 bits (181), Expect = 5e-18
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 83 WLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 122
WL EH NPYP++ EK LA T ++ Q+ WF NARRR
Sbjct: 1 WLLEHLHNPYPSEEEKSELARQTGLSRKQIDNWFINARRR 40
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in
the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 58.0 bits (141), Expect = 6e-12
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 127
+R T E L+ +KNPYP++ E+ LA +T QV WF N R +LK+
Sbjct: 3 KRTRFTPEQLEELEKEF---EKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 53.8 bits (130), Expect = 2e-10
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 124
+R + T E L+ +KNPYP++ E+ LA ++ QV WF N R + K
Sbjct: 4 KRTSFTPEQLEELEKEF---QKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 42.1 bits (100), Expect = 5e-06
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 68 RRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 125
+R T E L+ E +KN YP+ E+ LA +T QV WF N R + K+
Sbjct: 3 KRTTFTPEQLEELEK---EFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 40.1 bits (94), Expect = 2e-04
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 67 ARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 126
+ K R + L E + NPYP+ +I L+++ M V WF N R + KK+
Sbjct: 51 PKSKR-RRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKK 109
Query: 127 NK 128
Sbjct: 110 RS 111
>gnl|CDD|218025 pfam04320, DUF469, Protein with unknown function (DUF469).
Family of bacteria protein with no known function.
Length = 102
Score = 28.0 bits (63), Expect = 1.3
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 44 IDKQVIQVSNLTAVRYGAGYDL------AARRKNATRESTATLKAWLNEHK 88
ID +VI+ + L G GY R + T E A ++AWL
Sbjct: 40 ID-EVIEANGLAFG--GGGYLEWEGFVCLQRYGSCTEEDRAAVEAWLEARP 87
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 27.4 bits (61), Expect = 1.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 132 EPKNKTDDDDDAIISDCDEKDKDDLMMDEE 161
EP++ DD+DD D D+KD DD DE+
Sbjct: 49 EPEDDDDDEDDDDDDDKDDKDDDDDDDDED 78
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 28.4 bits (63), Expect = 2.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 118 NARRRLKKENKMTWEPKNKTDDDDDAIISDCDEKDKDDLMMDEE 161
NA R+L KE + + D++DD D DE D DD +++
Sbjct: 36 NAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDD 79
>gnl|CDD|236926 PRK11545, gntK, gluconate kinase 1; Provisional.
Length = 163
Score = 27.8 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 153 KDDLMMDEEKMKQHHRMVKGHF--PHMYVTKYETL 185
K D + E ++K KGHF M VT++ETL
Sbjct: 98 KGDFDVIESRLKAR----KGHFFKTQMLVTQFETL 128
>gnl|CDD|223857 COG0786, GltS, Na+/glutamate symporter [Amino acid transport and
metabolism].
Length = 404
Score = 27.6 bits (62), Expect = 4.5
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 121 RRLKKENKMTWEPKNKTDDDDDAIISDCDEKDKDDLMMDEEKMKQH 166
R L K+NK+ +P DDD + E K ++ E + +
Sbjct: 181 RWLIKKNKLKPDPTKDPDDDLVDVAF---EGPKSTRLITAEPLIET 223
>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
Reviewed.
Length = 830
Score = 27.8 bits (62), Expect = 5.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 114 TWFANARRRLKKENKMTWEPKN 135
TW A+A L++ N W P+N
Sbjct: 529 TWIADAPISLRQPNGQVWSPQN 550
>gnl|CDD|185352 PRK15455, PRK15455, PrkA family serine protein kinase; Provisional.
Length = 644
Score = 27.3 bits (61), Expect = 5.8
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 63 YDLAARRKNATRESTATLKAWLNEHKKNP--YPTKGEKIMLAI 103
+D +R A +E +L+ +L K++P Y E++++AI
Sbjct: 4 FDHYQQRYEAAKEEEFSLQEYLELCKQDPSAYANAAERLLMAI 46
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 25.7 bits (57), Expect = 9.8
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 117 ANARRRLKKENKMTWEPKNKTDDDDDAIISDCDEKDKDDLMMD------EEKMKQHHR 168
AR + +++ +PK D D++ + SD + D +D D +E+M + +
Sbjct: 23 GPARDGVDIDDEEDEDPKRYQDGDNEGLFSD-GKYDDEDEEADRIYESIDERMDERRK 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.377
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,801,752
Number of extensions: 871854
Number of successful extensions: 858
Number of sequences better than 10.0: 1
Number of HSP's gapped: 844
Number of HSP's successfully gapped: 29
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)