BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10106
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DM DMQQ+ + A A E+ N D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 7 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY Y+G ILLF+
Sbjct: 67 THETKHFIYFYLGQVAILLFK 87
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DM DMQQ+ + A A E+ N D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 10 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 69
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY Y+G ILLF+
Sbjct: 70 THETKHFIYFYLGQVAILLFK 90
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 58/81 (71%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DMP D+QQ+ I A A E+ N D+AA+IKKEF+ K+ P WHCVVG+ FGS+V
Sbjct: 7 VIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY YIG +LLF+
Sbjct: 67 THETHHFIYFYIGQVAVLLFK 87
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
Length = 94
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DM DMQQ+ + A A E+ N D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 12 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 71
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY Y+G ILLF+
Sbjct: 72 THETKHFIYFYLGQVAILLFK 92
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of
Dynein Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DM +MQQ+ + A A E+ N D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 7 VIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY Y+G ILLF+
Sbjct: 67 THETRHFIYFYLGQVAILLFK 87
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DM +MQQ+ + A A E+ N D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 7 VIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY Y+G ILLF+
Sbjct: 67 THETRHFIYFYLGQVAILLFK 87
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DM +MQQ+ + A A E+ N D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 9 VIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 68
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY Y+G ILLF+
Sbjct: 69 THETRHFIYFYLGQVAILLFK 89
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DM +MQQ+ + A A E+ N D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 9 VIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 68
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY Y+G ILLF+
Sbjct: 69 THETRHFIYFYLGQVAILLFK 89
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DM +MQQ+ + A A E+ N D+AA+IKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 3 VIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYV 62
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY Y+G ILLF+
Sbjct: 63 THETKHFIYFYLGQVAILLFK 83
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
Length = 89
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
+IK+ DM +MQQ+ + A A E+ N D+AA+IKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 7 VIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ FIY Y+G ILLF+
Sbjct: 67 THETKHFIYFYLGQVAILLFK 87
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQG--FGS 76
+IK+ DM DMQQ+ + A A E+ N D+AAYIKKEF+ KY P WHC+VG+ FGS
Sbjct: 7 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNFGS 66
Query: 77 FVTHDRSSFIYLYIGMDGILLFR 99
+VTH+ FIY Y+G ILLF+
Sbjct: 67 YVTHETKHFIYFYLGQVAILLFK 89
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
++K+ DM +MQ + I A A ++ N D+AA+IKKEF+ KY P WHCVVG+ FGS+V
Sbjct: 20 VVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYV 79
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH+ +FIY YIG ILLF+
Sbjct: 80 THETKNFIYFYIGQVAILLFK 100
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
++K++D+ + ++++++T++K A ++ D+A +KK+ + KYG WH +VG+ FGS+V
Sbjct: 15 IVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYV 74
Query: 79 THDRSSFIYLYIGMDGILLFR 99
TH++ F+Y YIG L+F+
Sbjct: 75 THEKGHFVYFYIGPLAFLVFK 95
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 29 MQQEVITVAKAAYERCNNFADLAAYIKKEFENK 61
+++ +T+ Y N + D AAYI+ +FE+K
Sbjct: 258 IKKSPLTICFPEYPGSNTYEDAAAYIQTQFESK 290
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 41 YERCNNFADLAAYIKKEFENKYG 63
Y +CN D++A++ EF KYG
Sbjct: 11 YVQCNPLLDVSAHVSDEFLVKYG 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,437,199
Number of Sequences: 62578
Number of extensions: 85793
Number of successful extensions: 271
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 16
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)