Query psy10106
Match_columns 101
No_of_seqs 110 out of 550
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:02:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 2.1E-44 7.2E-49 231.2 9.1 89 12-101 1-89 (89)
2 4ds1_A Dynein light chain 1, c 100.0 9.2E-43 3.2E-47 226.7 9.8 86 16-101 12-97 (97)
3 1yo3_A Dynein light chain 1; s 100.0 9.7E-42 3.3E-46 223.7 11.0 84 18-101 19-102 (102)
4 1use_A VAsp, vasodilator-stimu 60.2 11 0.00036 20.6 3.1 34 27-62 10-43 (45)
5 3e9v_A Protein BTG2; B-cell tr 56.0 9.6 0.00033 24.7 3.0 44 24-67 1-48 (120)
6 1eci_A Ectatomin; pore-forming 44.5 31 0.0011 17.5 4.6 33 26-60 4-36 (37)
7 1eci_B Ectatomin; pore-forming 39.8 12 0.0004 18.9 1.1 13 48-60 22-34 (34)
8 3k6g_A Telomeric repeat-bindin 36.2 16 0.00054 23.4 1.5 43 26-68 6-63 (111)
9 3gzx_A Biphenyl dioxygenase su 35.7 79 0.0027 24.5 5.8 44 52-100 44-88 (457)
10 1wj7_A Hypothetical protein (R 35.5 15 0.00053 23.3 1.4 34 37-72 57-91 (104)
11 2z15_A Protein TOB1; human TOB 34.8 17 0.00058 23.8 1.6 45 23-67 6-52 (130)
12 4fz4_A 0197-18KD, uncharacteri 34.8 69 0.0024 21.6 4.6 32 33-64 85-116 (154)
13 3id6_A NOP5, PRE mRNA splicing 34.3 37 0.0013 24.8 3.5 40 22-61 222-261 (268)
14 2bmo_A Oxygenase-alpha NBDO; n 32.3 1E+02 0.0034 23.4 5.8 44 53-100 24-67 (447)
15 1u84_A Hypothetical protein; s 29.9 44 0.0015 20.5 2.8 28 37-64 37-64 (90)
16 3vca_A Ring-hydroxylating diox 28.9 1.2E+02 0.0041 23.0 5.7 44 52-100 30-74 (412)
17 2b1x_A Naphthalene dioxygenase 28.8 1.2E+02 0.0041 23.2 5.8 42 54-100 34-76 (470)
18 3vp5_A Transcriptional regulat 28.6 1E+02 0.0035 19.4 4.7 31 23-53 7-41 (189)
19 3ipw_A Hydrolase TATD family p 27.3 48 0.0016 24.6 3.1 47 26-72 148-204 (325)
20 2zet_C Melanophilin; complex, 26.7 67 0.0023 21.3 3.5 49 8-60 4-52 (153)
21 1wgn_A UBAP1, ubiquitin associ 26.4 74 0.0025 18.3 3.1 28 35-62 34-62 (63)
22 1uli_A Biphenyl dioxygenase la 26.0 1.4E+02 0.0047 22.8 5.6 44 53-100 43-86 (460)
23 3vba_A Isopropylmalate/citrama 25.2 26 0.00088 24.1 1.2 17 61-77 50-66 (176)
24 2jt1_A PEFI protein; solution 25.1 70 0.0024 18.6 3.0 29 25-53 1-33 (77)
25 1baz_A ARC repressor; transcri 24.9 80 0.0027 16.9 3.1 44 11-60 3-47 (53)
26 1qwg_A PSL synthase;, (2R)-pho 24.4 1.7E+02 0.0059 21.1 5.5 47 22-71 108-168 (251)
27 1wyo_A Protein EB3, microtubul 24.2 46 0.0016 22.5 2.3 42 22-64 71-128 (159)
28 2gbw_A Biphenyl 2,3-dioxygenas 24.2 1.5E+02 0.0053 22.4 5.6 44 53-100 25-68 (454)
29 3icx_A PRE mRNA splicing prote 24.1 71 0.0024 23.2 3.4 39 22-60 89-127 (255)
30 2kzv_A Uncharacterized protein 24.0 24 0.00081 21.6 0.7 32 32-63 8-49 (92)
31 3n0q_A Putative aromatic-ring 23.8 1.6E+02 0.0055 22.3 5.6 44 52-100 28-72 (409)
32 3ajm_A Programmed cell death p 23.0 33 0.0011 24.4 1.4 13 48-60 125-137 (213)
33 2ozb_B U4/U6 small nuclear rib 22.0 81 0.0028 22.8 3.4 39 22-60 103-141 (260)
34 3nnr_A Transcriptional regulat 21.5 52 0.0018 21.3 2.2 29 25-53 2-34 (228)
35 2pkp_A Homoaconitase small sub 21.5 34 0.0012 23.2 1.2 17 61-77 48-64 (170)
36 3nrg_A TETR family transcripti 21.5 1.5E+02 0.0052 18.5 4.5 30 24-53 9-42 (217)
37 1ais_A TBP, protein (tata-bind 21.4 75 0.0026 21.6 3.0 25 77-101 126-154 (182)
38 3zzp_A TS9, ribosomal protein 21.3 1.1E+02 0.0038 17.8 3.4 27 18-44 49-75 (77)
39 2hcu_A 3-isopropylmalate dehyd 20.6 43 0.0015 23.7 1.6 17 61-77 82-98 (213)
40 3byp_A CZRB protein; membrane 20.2 68 0.0023 18.5 2.3 23 48-71 60-82 (94)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=2.1e-44 Score=231.17 Aligned_cols=89 Identities=52% Similarity=0.937 Sum_probs=85.3
Q ss_pred CCCCCCceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeC
Q psy10106 12 PKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIG 91 (101)
Q Consensus 12 m~~~~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~ 91 (101)
|++++ ++|+.+|||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||++||++++||||++|
T Consensus 1 m~~~k-~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g 79 (89)
T 3rjs_A 1 MADRK-AVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIG 79 (89)
T ss_dssp --CCC-CEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEET
T ss_pred CCCCc-cEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEEC
Confidence 66665 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEecC
Q psy10106 92 MDGILLFRHS 101 (101)
Q Consensus 92 ~~~illfKt~ 101 (101)
+++|||||||
T Consensus 80 ~~~iLlfKtg 89 (89)
T 3rjs_A 80 QVAVLLFKSG 89 (89)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEecC
Confidence 9999999997
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-43 Score=226.72 Aligned_cols=86 Identities=35% Similarity=0.843 Sum_probs=84.2
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEE
Q psy10106 16 KAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGI 95 (101)
Q Consensus 16 ~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~i 95 (101)
++++|+.+|||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||++||++++||||++|+++|
T Consensus 12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ai 91 (97)
T 4ds1_A 12 STPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAF 91 (97)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEEE
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEEE
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q psy10106 96 LLFRHS 101 (101)
Q Consensus 96 llfKt~ 101 (101)
||||||
T Consensus 92 LlfKtg 97 (97)
T 4ds1_A 92 LVFKTA 97 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999997
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=9.7e-42 Score=223.67 Aligned_cols=84 Identities=50% Similarity=0.932 Sum_probs=83.1
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEEEE
Q psy10106 18 PLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILL 97 (101)
Q Consensus 18 ~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~ill 97 (101)
++|+.+|||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||+|||++++||||++|+++|||
T Consensus 19 ~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~~aiLl 98 (102)
T 1yo3_A 19 SVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILL 98 (102)
T ss_dssp CCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETTEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECCEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q psy10106 98 FRHS 101 (101)
Q Consensus 98 fKt~ 101 (101)
||||
T Consensus 99 fKt~ 102 (102)
T 1yo3_A 99 FKSG 102 (102)
T ss_dssp EECC
T ss_pred EecC
Confidence 9997
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=60.20 E-value=11 Score=20.57 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccC
Q psy10106 27 NDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKY 62 (101)
Q Consensus 27 ~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~y 62 (101)
+.++++|++..+.-+++.+ .||-..|+++|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K--~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK--EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 3577888888888888776 569999999998763
No 5
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=56.04 E-value=9.6 Score=24.72 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHHHhh--CCCh--HHHHHHHHHhccccCCCceE
Q psy10106 24 DMPNDMQQEVITVAKAAYER--CNNF--ADLAAYIKKEFENKYGPAWH 67 (101)
Q Consensus 24 dM~~~mq~~~~~~a~~a~~~--~~~~--kdiA~~IK~~lD~~yg~~Wh 67 (101)
||-.|.+..+-=++.-+..+ .+.. ...|+.|.+.|-++|-+.|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46666555554444444444 2222 34688999999999999998
No 6
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=44.46 E-value=31 Score=17.51 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccc
Q psy10106 26 PNDMQQEVITVAKAAYERCNNFADLAAYIKKEFEN 60 (101)
Q Consensus 26 ~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~ 60 (101)
|...-+.++-....-.+++. -+||.+||+..|+
T Consensus 4 pkkiweticpt~~~~akkc~--g~iat~ik~~c~k 36 (37)
T 1eci_A 4 PKKIWETVCPTVEPWAKKCS--GDIATYIKRECGK 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHTBC--HHHHHHHHHHHHC
T ss_pred hHHHHHHhCcchHHHHHHcc--chHHHHHHHHhcc
Confidence 33444455555555555554 6899999998875
No 7
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=39.85 E-value=12 Score=18.88 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=10.8
Q ss_pred HHHHHHHHHhccc
Q psy10106 48 ADLAAYIKKEFEN 60 (101)
Q Consensus 48 kdiA~~IK~~lD~ 60 (101)
-+||.+||+..|+
T Consensus 22 g~iat~ik~~c~k 34 (34)
T 1eci_B 22 GSIATMIKKKCDK 34 (34)
T ss_dssp TTHHHHHHHHSCC
T ss_pred ccHHHHHHHHhCC
Confidence 5799999998774
No 8
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=36.23 E-value=16 Score=23.40 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCCh---------------HHHHHHHHHhccccCCCceEE
Q psy10106 26 PNDMQQEVITVAKAAYERCNNF---------------ADLAAYIKKEFENKYGPAWHC 68 (101)
Q Consensus 26 ~~~mq~~~~~~a~~a~~~~~~~---------------kdiA~~IK~~lD~~yg~~Whc 68 (101)
++.--..++++...++.++..+ ..-..+|-.-.-..-+|.|||
T Consensus 6 s~~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~r~dg~PiWsr 63 (111)
T 3k6g_A 6 SQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYPIWSR 63 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSSCTTSCCCCCH
T ss_pred CCCcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCCcCCCCcceee
Confidence 4445556677777777777642 122334444333456789986
No 9
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=35.66 E-value=79 Score=24.49 Aligned_cols=44 Identities=18% Similarity=0.476 Sum_probs=31.9
Q ss_pred HHHHHhccccCCCceEEEEeC-CceeeEEecCCcEEEEEeCCEEEEEEec
Q psy10106 52 AYIKKEFENKYGPAWHCVVGQ-GFGSFVTHDRSSFIYLYIGMDGILLFRH 100 (101)
Q Consensus 52 ~~IK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~illfKt 100 (101)
+....++++-|...|++|.-. ... +++.++-+.+++..|+|||.
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~ 88 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQ 88 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEEC
Confidence 445577788899999988643 221 24567778889999999984
No 10
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.49 E-value=15 Score=23.29 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=23.8
Q ss_pred HHHHHhhCCChHHHHHHHHHhccccC-CCceEEEEeC
Q psy10106 37 AKAAYERCNNFADLAAYIKKEFENKY-GPAWHCVVGQ 72 (101)
Q Consensus 37 a~~a~~~~~~~kdiA~~IK~~lD~~y-g~~WhcIVG~ 72 (101)
|+.||..++. |++..|..-|+..- .+.|.++.++
T Consensus 57 Ar~AL~~~ng--Dl~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 57 CVIALHDCNG--DVNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHTS--CHHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHcCC--CHHHHHHHHHhCCCcCCceeeeccc
Confidence 6667777764 46666777777653 4589998877
No 11
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=34.78 E-value=17 Score=23.84 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHhccccCCCceE
Q psy10106 23 TDMPNDMQQEVITVAKAAYERCNNF--ADLAAYIKKEFENKYGPAWH 67 (101)
Q Consensus 23 sdM~~~mq~~~~~~a~~a~~~~~~~--kdiA~~IK~~lD~~yg~~Wh 67 (101)
+.|-.|.+..+-=++.-...+.+.. ...++.|.+.|-++|-+.|.
T Consensus 6 ~~M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~HWy 52 (130)
T 2z15_A 6 SGMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWY 52 (130)
T ss_dssp CCSHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455555444433333333333322 35688899999999999993
No 12
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=34.77 E-value=69 Score=21.61 Aligned_cols=32 Identities=6% Similarity=0.043 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHhccccCCC
Q psy10106 33 VITVAKAAYERCNNFADLAAYIKKEFENKYGP 64 (101)
Q Consensus 33 ~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~ 64 (101)
..+.|..-.++|++..+|-+.+|+.|.+++++
T Consensus 85 ~tRqVa~YrkKYp~n~eIe~eyk~~l~qt~~~ 116 (154)
T 4fz4_A 85 YIRQVAELRKKYPGDNTIEEEYNAHLKQDEGK 116 (154)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHTCCCSSS
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHhhcccc
Confidence 34455566789999888888888887776654
No 13
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=34.32 E-value=37 Score=24.80 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=31.8
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhcccc
Q psy10106 22 STDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENK 61 (101)
Q Consensus 22 ~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~ 61 (101)
-+||+++..+.|...|..+++.+..-+.+.+||+..|.+-
T Consensus 222 G~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~ 261 (268)
T 3id6_A 222 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEV 261 (268)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888888877766678999999988763
No 14
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=32.26 E-value=1e+02 Score=23.37 Aligned_cols=44 Identities=14% Similarity=0.468 Sum_probs=30.5
Q ss_pred HHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEEEEEec
Q psy10106 53 YIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRH 100 (101)
Q Consensus 53 ~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~illfKt 100 (101)
....+++.-|...|++|.-. +.+. +++.++-+.+++..|+|||.
T Consensus 24 ~~~~E~~~if~~~W~~v~~~---~el~-~~g~~~~~~~~~~~vvv~R~ 67 (447)
T 2bmo_A 24 LFQHELKTIFARNWLFLTHD---SLIP-SPGDYVKAKMGVDEVIVSRQ 67 (447)
T ss_dssp HHHHHHHHTTTTSCEEEEEG---GGSC-STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHhhccCCeEEeEH---HHCC-CCCCeEEEEECCeeEEEEEC
Confidence 34556777788899997532 1111 24677788899999999984
No 15
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=29.87 E-value=44 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=20.6
Q ss_pred HHHHHhhCCChHHHHHHHHHhccccCCC
Q psy10106 37 AKAAYERCNNFADLAAYIKKEFENKYGP 64 (101)
Q Consensus 37 a~~a~~~~~~~kdiA~~IK~~lD~~yg~ 64 (101)
+..|+...++...+|+.|+.-|...|+.
T Consensus 37 Iv~av~~~d~~~~LA~~Iq~If~~SFee 64 (90)
T 1u84_A 37 VLQAVYETEDARTLAARIQSIYEFAFDE 64 (90)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 4455566667778999999888877753
No 16
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=28.91 E-value=1.2e+02 Score=23.03 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHHHhccccCCCceEEEEeC-CceeeEEecCCcEEEEEeCCEEEEEEec
Q psy10106 52 AYIKKEFENKYGPAWHCVVGQ-GFGSFVTHDRSSFIYLYIGMDGILLFRH 100 (101)
Q Consensus 52 ~~IK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~illfKt 100 (101)
+....++++-|...|++|.-. ... +++.++-+.+++..++|||.
T Consensus 30 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~ 74 (412)
T 3vca_A 30 EVYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRS 74 (412)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEc
Confidence 455677788889999997644 221 24678888899999999985
No 17
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=28.77 E-value=1.2e+02 Score=23.16 Aligned_cols=42 Identities=24% Similarity=0.485 Sum_probs=29.2
Q ss_pred HHHhccccCCCceEEEEeC-CceeeEEecCCcEEEEEeCCEEEEEEec
Q psy10106 54 IKKEFENKYGPAWHCVVGQ-GFGSFVTHDRSSFIYLYIGMDGILLFRH 100 (101)
Q Consensus 54 IK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~illfKt 100 (101)
...+++.-|...|++|--. .+. +++.++-+.+++..|+|||.
T Consensus 34 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~g~~vvv~R~ 76 (470)
T 2b1x_A 34 HDVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRD 76 (470)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHhhcCCeEeeeHHHCC-----CCCCeEEEEECCeEEEEEEc
Confidence 3455666788899997433 221 23567778899999999984
No 18
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=28.62 E-value=1e+02 Score=19.43 Aligned_cols=31 Identities=3% Similarity=0.138 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCC----hHHHHHH
Q psy10106 23 TDMPNDMQQEVITVAKAAYERCNN----FADLAAY 53 (101)
Q Consensus 23 sdM~~~mq~~~~~~a~~a~~~~~~----~kdiA~~ 53 (101)
..|+++.++.|++.|.+.+.+.+- -++||+.
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 41 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKA 41 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHH
Confidence 357889999999999999988764 2566654
No 19
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=27.28 E-value=48 Score=24.56 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHHhh-CCC---------hHHHHHHHHHhccccCCCceEEEEeC
Q psy10106 26 PNDMQQEVITVAKAAYER-CNN---------FADLAAYIKKEFENKYGPAWHCVVGQ 72 (101)
Q Consensus 26 ~~~mq~~~~~~a~~a~~~-~~~---------~kdiA~~IK~~lD~~yg~~WhcIVG~ 72 (101)
+.+.|+++.+.-.++..+ ++. ..|+.+.||+.-...-++..||.-|.
T Consensus 148 ~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~~d~l~iL~~~~~~~~~gViH~FsGs 204 (325)
T 3ipw_A 148 DKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGCKGVVHCFDGT 204 (325)
T ss_dssp CHHHHHHHHHHTHHHHHHCTTCCEEEEEESCHHHHHHHHHHTTCTTSCEEECSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhhCCeEEEEeCchHHHHHHHHHhcCCCCCcEEEEECCCC
Confidence 568899999888887777 653 46888888876544445667776665
No 20
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.70 E-value=67 Score=21.34 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=30.4
Q ss_pred CCCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccc
Q psy10106 8 GGAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFEN 60 (101)
Q Consensus 8 ~~~~m~~~~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~ 60 (101)
...+|.+. +--+-++++-++.|.+....+.+.-..|.+.-..||+.|++
T Consensus 4 ~~~~m~~~----~dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~ 52 (153)
T 2zet_C 4 GSSGMGKR----LDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQK 52 (153)
T ss_dssp -------C----CCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccC----CCcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 34566643 23567899999999888888877666666666677766654
No 21
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.40 E-value=74 Score=18.34 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=21.8
Q ss_pred HHHHHHHhhCCCh-HHHHHHHHHhccccC
Q psy10106 35 TVAKAAYERCNNF-ADLAAYIKKEFENKY 62 (101)
Q Consensus 35 ~~a~~a~~~~~~~-kdiA~~IK~~lD~~y 62 (101)
+.|..||++.+++ ...|++|-.+.|..-
T Consensus 34 ~qA~kALKat~~NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 34 ECVLRAMKKKGENIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCC
Confidence 4688899988764 568999999988653
No 22
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=26.04 E-value=1.4e+02 Score=22.79 Aligned_cols=44 Identities=20% Similarity=0.530 Sum_probs=30.0
Q ss_pred HHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEEEEEec
Q psy10106 53 YIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRH 100 (101)
Q Consensus 53 ~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~illfKt 100 (101)
....+++.-|...|++|--. +.+. +++.++-+.+++..|+|||.
T Consensus 43 ~~~~E~~~if~~~W~~v~~~---~el~-~~g~~~~~~i~~~~vvv~R~ 86 (460)
T 1uli_A 43 LYEQELERIFGRSWLLMGHE---TQIP-KAGDFMTNYMGEDPVMVVRQ 86 (460)
T ss_dssp HHHHHHHHTTTTSCEEEEEG---GGSC-STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHhhhcCceEEEEH---HHCC-CCCCeEEEEECCeEEEEEEc
Confidence 34566777788999997432 1111 24567778889999999984
No 23
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=25.22 E-value=26 Score=24.09 Aligned_cols=17 Identities=35% Similarity=0.349 Sum_probs=12.8
Q ss_pred cCCCceEEEEeCCceee
Q psy10106 61 KYGPAWHCVVGQGFGSF 77 (101)
Q Consensus 61 ~yg~~WhcIVG~~Fgs~ 77 (101)
+|-+.+-+|.|+|||+=
T Consensus 50 ~~~~g~IlVaG~NFG~G 66 (176)
T 3vba_A 50 KVKPGDIIVGGKNFGCG 66 (176)
T ss_dssp HCCTTCEEEECTTBTBS
T ss_pred hcCCCCEEEeCCCccCC
Confidence 45566788888899964
No 24
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.08 E-value=70 Score=18.63 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHhh---CC-ChHHHHHH
Q psy10106 25 MPNDMQQEVITVAKAAYER---CN-NFADLAAY 53 (101)
Q Consensus 25 M~~~mq~~~~~~a~~a~~~---~~-~~kdiA~~ 53 (101)
|++.-++.|++...+.++. ++ +-.|||+.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~ 33 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVKTRDIADA 33 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCHHHHHHH
Confidence 7778888899888887666 33 23566654
No 25
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=24.92 E-value=80 Score=16.94 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=27.0
Q ss_pred CCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHhccc
Q psy10106 11 APKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNN-FADLAAYIKKEFEN 60 (101)
Q Consensus 11 ~m~~~~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~~-~kdiA~~IK~~lD~ 60 (101)
+|++...+.++ +|+++.+.+...|..- ..+ +..|...|.+.++.
T Consensus 3 ~m~~~~~~~lR---lp~eL~~~l~~~A~~~---grS~N~~i~~~L~~~l~~ 47 (53)
T 1baz_A 3 GMSKMPQVNLR---WPREVLDLVRKVAEEN---GRSVNSEIYQRVMESFKK 47 (53)
T ss_dssp --CCSCEEEEE---CCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHH
T ss_pred CcccCCeeEEE---CCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhh
Confidence 46554434444 9999998877666542 222 45677777777765
No 26
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=24.37 E-value=1.7e+02 Score=21.10 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=34.7
Q ss_pred eCCCCHHHHHHHHHHHHHH-Hh---h----CC------ChHHHHHHHHHhccccCCCceEEEEe
Q psy10106 22 STDMPNDMQQEVITVAKAA-YE---R----CN------NFADLAAYIKKEFENKYGPAWHCVVG 71 (101)
Q Consensus 22 ~sdM~~~mq~~~~~~a~~a-~~---~----~~------~~kdiA~~IK~~lD~~yg~~WhcIVG 71 (101)
..+||.+....+++.+.+. +. + .. +-.+..+.++..||. +.|.|||=
T Consensus 108 ~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiE 168 (251)
T 1qwg_A 108 SSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIE 168 (251)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEe
Confidence 4689999999999999887 32 1 11 225688899999998 57777773
No 27
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.21 E-value=46 Score=22.48 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=31.7
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhCCC----------------hHHHHHHHHHhccccCCC
Q psy10106 22 STDMPNDMQQEVITVAKAAYERCNN----------------FADLAAYIKKEFENKYGP 64 (101)
Q Consensus 22 ~sdM~~~mq~~~~~~a~~a~~~~~~----------------~kdiA~~IK~~lD~~yg~ 64 (101)
.+.++-++.+.+ ++.++|+++++. .-|.++.+|+.+|+.|++
T Consensus 71 ~a~~e~e~~~N~-k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 71 QAKLEHEYIHNF-KVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp TCCSSHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 677777777664 566778877653 237899999999999975
No 28
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=24.16 E-value=1.5e+02 Score=22.39 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=30.1
Q ss_pred HHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEEEEEec
Q psy10106 53 YIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRH 100 (101)
Q Consensus 53 ~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~illfKt 100 (101)
....+++.-|...|++|.-. +.+. +++.++-+.+++..|+|||.
T Consensus 25 ~~~~E~~~if~~~W~~v~~~---~el~-~~g~~~~~~~~~~~vvv~R~ 68 (454)
T 2gbw_A 25 VYALEIERIFSRAWLMLGHE---SLVP-KPGDFITTYMAEDKVILSHQ 68 (454)
T ss_dssp HHHHHHHHTTTTSCEEEEEG---GGSC-STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHhhcCcEEEeEH---HHCC-CCCCeEEEEECCeEEEEEEc
Confidence 33456777788899997433 1111 24667778899999999984
No 29
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=24.06 E-value=71 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=29.6
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccc
Q psy10106 22 STDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFEN 60 (101)
Q Consensus 22 ~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~ 60 (101)
..|++++..+.+.+.|..+++....-+++.+||+..+..
T Consensus 89 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~ 127 (255)
T 3icx_A 89 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKE 127 (255)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357888888888888888877766656788888877653
No 30
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=23.99 E-value=24 Score=21.65 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhCCCh------HHHHHHHHHh---cccc-CC
Q psy10106 32 EVITVAKAAYERCNNF------ADLAAYIKKE---FENK-YG 63 (101)
Q Consensus 32 ~~~~~a~~a~~~~~~~------kdiA~~IK~~---lD~~-yg 63 (101)
.++++..+|++...++ .+|-++|++. ||.+ ||
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYG 49 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWG 49 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTC
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccC
Confidence 4555555565554432 4788888875 7764 55
No 31
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=23.76 E-value=1.6e+02 Score=22.29 Aligned_cols=44 Identities=9% Similarity=0.331 Sum_probs=32.6
Q ss_pred HHHHHhccccCCCceEEEEeC-CceeeEEecCCcEEEEEeCCEEEEEEec
Q psy10106 52 AYIKKEFENKYGPAWHCVVGQ-GFGSFVTHDRSSFIYLYIGMDGILLFRH 100 (101)
Q Consensus 52 ~~IK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~illfKt 100 (101)
+....+++.-|...|++|.-. ... +++.++-+.+++..++|||.
T Consensus 28 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~ 72 (409)
T 3n0q_A 28 EVFQTDLQEIFYKEWLFAIPACELD-----KPGSYVTHQVGNYNVIIVRG 72 (409)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEc
Confidence 445567778889999998644 221 24677888899999999984
No 32
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=22.97 E-value=33 Score=24.41 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=12.1
Q ss_pred HHHHHHHHHhccc
Q psy10106 48 ADLAAYIKKEFEN 60 (101)
Q Consensus 48 kdiA~~IK~~lD~ 60 (101)
||||..||+-||.
T Consensus 125 KeIAsaIKklLDA 137 (213)
T 3ajm_A 125 KDIASAIKELLDT 137 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7999999999996
No 33
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=22.04 E-value=81 Score=22.79 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=30.4
Q ss_pred eCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccc
Q psy10106 22 STDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFEN 60 (101)
Q Consensus 22 ~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~ 60 (101)
..+++++..+.|.+.|..+++-...-+++.+||+..|..
T Consensus 103 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~ 141 (260)
T 2ozb_B 103 GQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSF 141 (260)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889888889998888877766556788888877653
No 34
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=21.53 E-value=52 Score=21.34 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHhhCCC----hHHHHHH
Q psy10106 25 MPNDMQQEVITVAKAAYERCNN----FADLAAY 53 (101)
Q Consensus 25 M~~~mq~~~~~~a~~a~~~~~~----~kdiA~~ 53 (101)
|+++.++.|++.|.+.+.+.+- -++||+.
T Consensus 2 m~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~ 34 (228)
T 3nnr_A 2 MTMKTRDKILLSSLELFNDKGERNITTNHIAAH 34 (228)
T ss_dssp --CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhChhhcCHHHHHHH
Confidence 6778899999999999887653 2455544
No 35
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=21.51 E-value=34 Score=23.21 Aligned_cols=17 Identities=29% Similarity=0.265 Sum_probs=13.0
Q ss_pred cCCCceEEEEeCCceee
Q psy10106 61 KYGPAWHCVVGQGFGSF 77 (101)
Q Consensus 61 ~yg~~WhcIVG~~Fgs~ 77 (101)
++-+.|-+|.|++||+=
T Consensus 48 ~~~~~~iivaG~nfG~G 64 (170)
T 2pkp_A 48 KVKEGDVIVAGENFGCG 64 (170)
T ss_dssp HCCTTCEEEECTTBTBS
T ss_pred hCCCCCEEEecCCCCCC
Confidence 34567889999999963
No 36
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=21.46 E-value=1.5e+02 Score=18.54 Aligned_cols=30 Identities=10% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCC----hHHHHHH
Q psy10106 24 DMPNDMQQEVITVAKAAYERCNN----FADLAAY 53 (101)
Q Consensus 24 dM~~~mq~~~~~~a~~a~~~~~~----~kdiA~~ 53 (101)
.++++.++.|++.|.+.+.+.+- -.+||+.
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 42 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITER 42 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 46788999999999999988763 2566654
No 37
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=21.41 E-value=75 Score=21.62 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.2
Q ss_pred eEEecCCcE--EEEEeC--CEEEEEEecC
Q psy10106 77 FVTHDRSSF--IYLYIG--MDGILLFRHS 101 (101)
Q Consensus 77 ~vth~~~~~--i~F~~~--~~~illfKt~ 101 (101)
...|+++.| +-+++. ...+|||.||
T Consensus 126 ~~~YePe~fpgli~R~~~pk~~~lIF~SG 154 (182)
T 1ais_A 126 NCEYEPEQFPGVIYRVKEPKSVILLFSSG 154 (182)
T ss_dssp TEECCTTTCSSEEEEETTTTEEEEECTTS
T ss_pred CCEECCccCceEEEEeCCCcEEEEEecCC
Confidence 468998886 667774 8999999987
No 38
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=21.31 E-value=1.1e+02 Score=17.79 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=22.9
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHhhC
Q psy10106 18 PLIKSTDMPNDMQQEVITVAKAAYERC 44 (101)
Q Consensus 18 ~~I~~sdM~~~mq~~~~~~a~~a~~~~ 44 (101)
+.|+..|++++..+.+++.....+.+.
T Consensus 49 m~Il~P~l~ee~~~~~vek~~~~i~~~ 75 (77)
T 3zzp_A 49 NIVLNPNLDQSQLQNEKEIIQRALENY 75 (77)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999988887654
No 39
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=20.59 E-value=43 Score=23.67 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=13.5
Q ss_pred cCCCceEEEEeCCceee
Q psy10106 61 KYGPAWHCVVGQGFGSF 77 (101)
Q Consensus 61 ~yg~~WhcIVG~~Fgs~ 77 (101)
+|.+..-+|+|+|||+=
T Consensus 82 ~~~~~~IlvaG~NfGcG 98 (213)
T 2hcu_A 82 EYREASILITGDNFGAG 98 (213)
T ss_dssp GGTTCCEEEECSSBTCS
T ss_pred hhcCCcEEEecCCCCCC
Confidence 46678889999999963
No 40
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=20.17 E-value=68 Score=18.51 Aligned_cols=23 Identities=4% Similarity=0.197 Sum_probs=18.0
Q ss_pred HHHHHHHHHhccccCCCceEEEEe
Q psy10106 48 ADLAAYIKKEFENKYGPAWHCVVG 71 (101)
Q Consensus 48 kdiA~~IK~~lD~~yg~~WhcIVG 71 (101)
.+++..|++.|-++|+.. ||.|-
T Consensus 60 h~i~~~ie~~l~~~~~~~-~vtIh 82 (94)
T 3byp_A 60 HRLCDELERALAQAFPGL-QATIH 82 (94)
T ss_dssp HHHHHHHHHHHHHHSTTE-EEEEE
T ss_pred HHHHHHHHHHHHHHCCCC-EEEEE
Confidence 357888888888889876 88763
Done!