RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10106
(101 letters)
>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1.
Length = 86
Score = 123 bits (310), Expect = 2e-38
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 18 PLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSF 77
++K+ DMP +MQ++ I A A E+ N D+AA+IKKEF+ KYGP WHC+VG+ FGS+
Sbjct: 3 AVVKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSY 62
Query: 78 VTHDRSSFIYLYIGMDGILLFR 99
VTH+ FIY YIG LLF+
Sbjct: 63 VTHETKHFIYFYIGQLAFLLFK 84
>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional.
Length = 90
Score = 115 bits (290), Expect = 2e-35
Identities = 45/87 (51%), Positives = 59/87 (67%)
Query: 13 KDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQ 72
D+ ++K+ DM DMQQ+ I A A E+ N D+AAYIKKEF+ KY P WHC+VG+
Sbjct: 2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGR 61
Query: 73 GFGSFVTHDRSSFIYLYIGMDGILLFR 99
FGS+VTH+ FIY Y+G ILLF+
Sbjct: 62 NFGSYVTHETKHFIYFYLGQVAILLFK 88
>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein;
Provisional.
Length = 128
Score = 73.9 bits (181), Expect = 2e-18
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 6 KKGGAAPKDDKAPL---IKSTDMPNDMQQEVITVAKAAYERCNNFAD---LAAYIKKEFE 59
KK +D K L ++++DMP +Q + A+ + D LA +KKEF+
Sbjct: 21 KKKAKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFD 80
Query: 60 NKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFR 99
+ YGPAWHC+VG FGS+VTH F+Y I ILLF+
Sbjct: 81 SAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFK 120
>gnl|CDD|201298 pfam00548, Peptidase_C3, 3C cysteine protease (picornain 3C).
Picornaviral proteins are expressed as a single
polyprotein which is cleaved by the viral 3C cysteine
protease.
Length = 170
Score = 29.2 bits (66), Expect = 0.23
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 7 KGGAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAW 66
G D L+ + + +T+ K +R F D+ Y+ ++ K A
Sbjct: 52 DGKLVKVLDAYELVDRFGVNLE-----LTLVK--LKRNEKFRDIRKYLPEDI-KKGNDAV 103
Query: 67 HCVVGQGFGSFVTHDRSSFIYLYIGMDG 94
V FG + Y +I + G
Sbjct: 104 LLVNNSEFGRLIVPVGFVTYYGFINLSG 131
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase
complex and is required for 1-methyladenosine
modification and maturation of initiator
methionyl-tRNA.
Length = 309
Score = 28.2 bits (63), Expect = 0.60
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 40 AYERCNNFADLAAYIKKEFENKYGPAWHC-VVGQGFGSFVTHDRSSFIYL 88
Y ++ L + KYG H ++G+ +GS V+ + F+Y+
Sbjct: 18 VYLGHDSMVPLTVERGGTTQTKYGVLRHSDIIGKRYGSKVSSSKGGFVYV 67
>gnl|CDD|193129 pfam12652, CotJB, CotJB protein. CotJ is a sigma E-controlled
operon involved in the spore coat of Bacillus subtilis.
This protein has been identified as a spore coat
protein.
Length = 78
Score = 25.6 bits (57), Expect = 2.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 38 KAAYERCNNFADLAAYIKKEFENKYGP 64
+ A E N ++ +KKE+E +YGP
Sbjct: 29 QEALEYYNEYSAKRKQLKKEYEKQYGP 55
>gnl|CDD|226240 COG3717, KduI, 5-keto 4-deoxyuronate isomerase [Carbohydrate
transport and metabolism].
Length = 278
Score = 26.6 bits (59), Expect = 2.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 79 THDRSSFIYLYIGMD 93
HDR +YLY MD
Sbjct: 197 VHDRRMEVYLYFDMD 211
>gnl|CDD|117527 pfam08961, DUF1875, Domain of unknown function (DUF1875). The MIT
domain, found in Nuclear receptor-binding factor 2, has
no known function.
Length = 243
Score = 25.9 bits (56), Expect = 3.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 3 PKPKKGGAAPKDDKAPLIKSTDMPNDMQQEV 33
P+P G APKDDK + + D+++ V
Sbjct: 108 PEPCIGSKAPKDDKTIIEEQATKIADLKRHV 138
>gnl|CDD|102361 PRK06404, PRK06404, anthranilate synthase component I; Reviewed.
Length = 351
Score = 25.6 bits (56), Expect = 4.9
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 50 LAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLY 89
L I +EFE + F+ +DRS +++ Y
Sbjct: 124 LQVVISREFEANIDF------KEKLSEFINNDRSRYVFYY 157
>gnl|CDD|223229 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
transport and metabolism].
Length = 428
Score = 25.2 bits (56), Expect = 7.3
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 39 AAYERCNNFADLAAYIKK 56
A YE + + AYI +
Sbjct: 119 AEYEVFTDPEEAKAYIDE 136
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 25.0 bits (55), Expect = 9.1
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 74 FGSFVTHDRSSFIYLYIGMDGILL 97
+FV HD++++ G L
Sbjct: 237 VSTFVVHDKTNYNINEPSSSGKTL 260
>gnl|CDD|213942 TIGR04329, cas1_PREFRAN, CRISPR-associated endonuclease Cas1,
subtype PREFRAN. Members of this family are the Cas1
endonuclease of a novel CRISPR subtype, PREFRAN, found
in Prevotella bryantii B14, Prevotella disiens
FB035-09AN, Francisella tularensis subsp. novicida,
Francisella philomiragia, Butyrivibrio proteoclasticus
B316, Helcococcus kunzii ATCC 51366, etc.
Length = 317
Score = 24.7 bits (54), Expect = 9.7
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLA 51
L+KST M +++ E + + D
Sbjct: 122 LLKSTRMKDELLTEAKFKLTRYIDAIDAIEDDK 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.428
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,123,901
Number of extensions: 414997
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 21
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)