RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10106
(101 letters)
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide
binding, nucle structural protein-transport protein
complex; 1.85A {Saccharomyces cerevisiae}
Length = 97
Score = 126 bits (319), Expect = 6e-40
Identities = 31/94 (32%), Positives = 63/94 (67%)
Query: 8 GGAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWH 67
G + ++ P++K++D+ + ++++++T++K A ++ D+A +KK+ + KYG WH
Sbjct: 4 GSMSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWH 63
Query: 68 CVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRHS 101
+VG+ FGS+VTH++ F+Y YIG L+F+ +
Sbjct: 64 VIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub
malaria, SGC, transport protein; 1.65A {Plasmodium
falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A
2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A
1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Length = 102
Score = 125 bits (315), Expect = 3e-39
Identities = 42/98 (42%), Positives = 60/98 (61%)
Query: 3 PKPKKGGAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKY 62
++ + ++K+ DM +MQ + I A A ++ N D+AA+IKKEF+ KY
Sbjct: 4 SHHHHHHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKY 63
Query: 63 GPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRH 100
P WHCVVG+ FGS+VTH+ +FIY YIG ILLF+
Sbjct: 64 DPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKS 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 0.92
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 4/15 (26%)
Query: 11 APKDDKAP-L-IKST 23
A D AP L IK+T
Sbjct: 33 AD--DSAPALAIKAT 45
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO;
3.10A {Homo sapiens}
Length = 383
Score = 26.7 bits (59), Expect = 1.5
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 69 VVGQGFGSFVTHDRSSFIYLYIGMDGIL 96
+ +F I +GIL
Sbjct: 93 NTSFLVNIATIFESENFFLPGIKWNGIL 120
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag
repair, structural genomics consortium, SGC, protein
bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Length = 348
Score = 25.9 bits (58), Expect = 2.6
Identities = 3/24 (12%), Positives = 12/24 (50%)
Query: 70 VGQGFGSFVTHDRSSFIYLYIGMD 93
+ + +++ + F+YL + +
Sbjct: 277 IETVYAAYLPKNTHPFLYLSLEIS 300
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling
protein, signaling protein-protei complex; HET: SEP;
1.90A {Homo sapiens}
Length = 261
Score = 25.2 bits (54), Expect = 4.6
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 16 KAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWH 67
+A L + + ++M + + VA E +L + K +W
Sbjct: 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWR 88
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3,
phosphoserine, structural GE consortium, SGC, ywhae;
HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A*
3m50_A* 3m51_A* 3axy_C*
Length = 234
Score = 24.8 bits (53), Expect = 5.4
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 16 KAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWH 67
+A L + + ++M + + VA E +L + K +W
Sbjct: 11 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWR 62
>2jln_A MHP1; hydantoin, transporter, membrane protein,
nucleobase-cation-symport-1 family; 2.85A
{Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Length = 501
Score = 25.1 bits (55), Expect = 5.5
Identities = 7/53 (13%), Positives = 17/53 (32%)
Query: 46 NFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLF 98
+ D+ K + ++ +S I+ +IG ++L
Sbjct: 226 SIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLV 278
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron
transport; HET: HEC; NMR {Pseudomonas putida}
Length = 110
Score = 24.3 bits (52), Expect = 6.4
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 5 PKKGGAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNF------------ADLAA 52
P G + D L++ +P+ M E +A +E+ N + L +
Sbjct: 32 PDLLGVTRQRDANWLVRWLKVPDQMLAEKDPLAMLLFEQYNRLAMPNMRLGDAEVSALIS 91
Query: 53 YIKKEFENKYGPA 65
Y+++E P
Sbjct: 92 YLEEETARLQTPV 104
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending
protein, dnabii family, HU/IHF family, DNA binding
protein/DNA complex; 3.02A {Borrelia burgdorferi}
Length = 108
Score = 23.8 bits (52), Expect = 9.9
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 73 GFGSFVTHDRSS 84
FG+F R
Sbjct: 59 SFGTFEVRKRKG 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.428
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,549,414
Number of extensions: 79944
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 22
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)