RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10106
         (101 letters)



>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 87

 Score =  116 bits (293), Expect = 2e-36
 Identities = 44/86 (51%), Positives = 59/86 (68%)

Query: 15  DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
           D+  +IK+ DM  +MQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 1   DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 60

Query: 75  GSFVTHDRSSFIYLYIGMDGILLFRH 100
           GS+VTH+   FIY Y+G   ILLF+ 
Sbjct: 61  GSYVTHETRHFIYFYLGQVAILLFKS 86


>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea)
          [TaxId: 3562]}
          Length = 91

 Score = 23.2 bits (50), Expect = 4.7
 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 9/49 (18%)

Query: 33 VITVAKAAYERCNNFADLAAYI--KKEFENKYGPAW-------HCVVGQ 72
          V+ V    Y  C+       Y   +   +   G  +       HC  G 
Sbjct: 36 VVAVNGRGYASCSAPRGARTYSSGQDRIKLTRGQNYFICSFPGHCGGGM 84


>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
          C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 23.3 bits (50), Expect = 4.8
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 54 IKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILL 97
          ++  F  KYG    C V +GF      +  +      G DG ++
Sbjct: 33 VEAIFS-KYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMI 75


>d1f6fa_ a.26.1.1 (A:) Prolactin (placental lactogen) {Sheep (Ovis
          aries) [TaxId: 9940]}
          Length = 197

 Score = 23.7 bits (51), Expect = 5.5
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 40 AYERCNNFADLAAYIKKEFENKYGPAWH 67
          A    N  + LA  +   F+ +YG   +
Sbjct: 25 ATTVANYNSKLAGEMVNRFDEQYGQGIN 52


>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum
          [TaxId: 34018]}
          Length = 118

 Score = 23.1 bits (49), Expect = 6.8
 Identities = 7/43 (16%), Positives = 16/43 (37%)

Query: 54 IKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGIL 96
          +  + +N  GPA   V+ +  G+    + S+  +         
Sbjct: 19 VGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHW 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,963
Number of extensions: 15790
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 7
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)