Query psy10107
Match_columns 140
No_of_seqs 213 out of 1162
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:03:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.9 1.5E-21 5.3E-26 132.0 8.2 62 6-67 9-70 (83)
2 2lk2_A Homeobox protein TGIF1; 99.8 1.7E-21 5.8E-26 134.0 6.2 58 9-66 10-67 (89)
3 3k2a_A Homeobox protein MEIS2; 99.8 5.6E-21 1.9E-25 124.6 7.3 59 9-67 3-61 (67)
4 1x2n_A Homeobox protein pknox1 99.8 1.2E-20 4.2E-25 124.2 8.2 62 6-67 9-70 (73)
5 1k61_A Mating-type protein alp 99.8 2.2E-20 7.5E-25 118.6 7.9 59 7-65 1-59 (60)
6 1du6_A PBX1, homeobox protein 99.8 1.1E-20 3.6E-25 121.5 6.2 59 6-64 5-63 (64)
7 1puf_B PRE-B-cell leukemia tra 99.8 3.1E-20 1.1E-24 122.2 8.4 62 6-67 3-64 (73)
8 1b72_B Protein (PBX1); homeodo 99.8 5.3E-20 1.8E-24 124.7 8.1 62 6-67 3-64 (87)
9 1le8_B Mating-type protein alp 99.8 1.2E-19 4.2E-24 122.4 8.0 62 5-66 3-64 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.8 2.1E-19 7.2E-24 122.1 8.3 59 5-63 28-86 (87)
11 2ecc_A Homeobox and leucine zi 99.8 7.4E-19 2.5E-23 117.6 7.4 65 4-72 3-67 (76)
12 1akh_A Protein (mating-type pr 99.7 5.1E-18 1.7E-22 107.8 6.1 55 6-63 7-61 (61)
13 3a02_A Homeobox protein arista 99.7 5.9E-18 2E-22 107.4 6.3 58 7-67 2-59 (60)
14 2dmu_A Homeobox protein goosec 99.7 1.5E-17 5E-22 108.5 7.3 59 6-67 9-67 (70)
15 1bw5_A ISL-1HD, insulin gene e 99.7 1.4E-17 4.7E-22 107.5 6.9 58 6-66 5-62 (66)
16 1ig7_A Homeotic protein MSX-1; 99.7 1.8E-17 6.2E-22 104.2 7.1 56 6-64 2-57 (58)
17 2djn_A Homeobox protein DLX-5; 99.7 2.1E-17 7.3E-22 107.8 7.4 59 6-67 9-67 (70)
18 2hdd_A Protein (engrailed home 99.7 1.8E-17 6.2E-22 105.4 6.8 56 6-64 5-60 (61)
19 2cra_A Homeobox protein HOX-B1 99.7 1.9E-17 6.6E-22 108.0 7.1 59 6-67 9-67 (70)
20 1jgg_A Segmentation protein EV 99.7 2.2E-17 7.4E-22 104.7 7.0 57 6-65 3-59 (60)
21 2e1o_A Homeobox protein PRH; D 99.7 2.5E-17 8.4E-22 107.5 7.3 59 6-67 9-67 (70)
22 1ahd_P Antennapedia protein mu 99.7 2.6E-17 8.9E-22 107.1 7.2 62 5-69 3-64 (68)
23 2k40_A Homeobox expressed in E 99.7 3.8E-17 1.3E-21 105.7 7.8 59 6-67 3-61 (67)
24 2da1_A Alpha-fetoprotein enhan 99.7 1.6E-17 5.3E-22 108.3 5.9 59 6-67 9-67 (70)
25 2da2_A Alpha-fetoprotein enhan 99.7 2.5E-17 8.7E-22 107.3 6.9 59 6-67 9-67 (70)
26 2dn0_A Zinc fingers and homeob 99.7 4E-17 1.4E-21 108.2 7.8 58 7-67 11-68 (76)
27 2h1k_A IPF-1, pancreatic and d 99.7 2.9E-17 9.9E-22 105.2 6.9 57 6-65 5-61 (63)
28 2dmt_A Homeobox protein BARH-l 99.7 3.6E-17 1.2E-21 109.4 7.2 59 6-67 19-77 (80)
29 2da5_A Zinc fingers and homeob 99.7 5.5E-17 1.9E-21 107.4 7.9 61 5-68 8-68 (75)
30 3rkq_A Homeobox protein NKX-2. 99.7 6.9E-17 2.4E-21 101.1 7.6 55 6-63 4-58 (58)
31 2hi3_A Homeodomain-only protei 99.7 1.3E-16 4.4E-21 105.0 9.2 61 4-67 2-63 (73)
32 2da3_A Alpha-fetoprotein enhan 99.7 2.5E-17 8.5E-22 109.7 5.8 58 7-67 20-77 (80)
33 2vi6_A Homeobox protein nanog; 99.7 4.7E-17 1.6E-21 103.8 6.7 57 6-65 5-61 (62)
34 2da4_A Hypothetical protein DK 99.7 4.2E-17 1.4E-21 109.0 6.5 57 7-66 11-71 (80)
35 2l7z_A Homeobox protein HOX-A1 99.7 6.7E-17 2.3E-21 106.4 7.2 59 6-67 9-67 (73)
36 1fjl_A Paired protein; DNA-bin 99.7 6.3E-17 2.2E-21 108.3 7.0 58 6-66 20-77 (81)
37 2dmq_A LIM/homeobox protein LH 99.7 6.4E-17 2.2E-21 107.9 7.0 59 6-67 9-67 (80)
38 1uhs_A HOP, homeodomain only p 99.7 9.2E-17 3.1E-21 105.3 7.6 59 6-67 3-62 (72)
39 2cue_A Paired box protein PAX6 99.7 9.2E-17 3.1E-21 107.4 7.6 59 6-67 9-67 (80)
40 3a03_A T-cell leukemia homeobo 99.7 6.1E-17 2.1E-21 101.5 6.3 54 9-65 2-55 (56)
41 1zq3_P PRD-4, homeotic bicoid 99.7 9.9E-17 3.4E-21 104.2 7.5 59 6-67 4-62 (68)
42 2dms_A Homeobox protein OTX2; 99.7 8.6E-17 3E-21 107.4 7.1 59 6-67 9-67 (80)
43 1ftt_A TTF-1 HD, thyroid trans 99.7 1.2E-16 4.1E-21 103.8 7.5 60 5-67 3-62 (68)
44 1yz8_P Pituitary homeobox 2; D 99.7 4.2E-17 1.4E-21 105.9 5.1 59 6-67 5-63 (68)
45 1nk2_P Homeobox protein VND; h 99.7 1.2E-16 4.1E-21 106.1 7.1 58 7-67 12-69 (77)
46 1b8i_A Ultrabithorax, protein 99.7 1.4E-16 4.8E-21 106.9 6.9 58 7-67 23-80 (81)
47 2kt0_A Nanog, homeobox protein 99.7 1.4E-16 4.7E-21 107.1 6.9 57 7-66 25-81 (84)
48 2r5y_A Homeotic protein sex co 99.7 2.1E-16 7.2E-21 107.4 7.8 58 6-66 30-87 (88)
49 1puf_A HOX-1.7, homeobox prote 99.7 1.3E-16 4.5E-21 105.9 6.6 59 6-67 15-73 (77)
50 2ly9_A Zinc fingers and homeob 99.7 4.6E-16 1.6E-20 102.3 8.8 59 6-67 8-66 (74)
51 2ecb_A Zinc fingers and homeob 99.7 2.6E-16 8.8E-21 108.0 7.7 59 5-66 12-70 (89)
52 2dmp_A Zinc fingers and homeob 99.6 3.7E-16 1.3E-20 106.8 7.7 60 5-67 14-73 (89)
53 3nau_A Zinc fingers and homeob 99.6 2.2E-16 7.6E-21 102.8 6.1 52 11-65 11-62 (66)
54 2m0c_A Homeobox protein arista 99.6 4.1E-16 1.4E-20 102.4 7.0 58 7-67 12-69 (75)
55 2e19_A Transcription factor 8; 99.6 5.7E-16 2E-20 100.0 7.4 57 5-64 4-60 (64)
56 3a01_A Homeodomain-containing 99.6 3.5E-16 1.2E-20 107.6 6.7 58 7-67 20-77 (93)
57 1b72_A Protein (homeobox prote 99.6 5.2E-16 1.8E-20 107.3 7.5 58 7-67 37-94 (97)
58 1wh5_A ZF-HD homeobox family p 99.6 2.6E-16 8.8E-21 105.7 5.1 58 7-64 20-78 (80)
59 2cuf_A FLJ21616 protein; homeo 99.6 6.2E-16 2.1E-20 106.5 6.1 58 7-67 10-82 (95)
60 3nar_A ZHX1, zinc fingers and 99.6 1.4E-15 4.7E-20 105.0 7.1 58 6-66 27-84 (96)
61 3d1n_I POU domain, class 6, tr 99.6 1.6E-15 5.3E-20 112.4 6.9 55 7-64 96-150 (151)
62 2d5v_A Hepatocyte nuclear fact 99.6 1.3E-15 4.6E-20 113.9 6.4 58 6-66 99-156 (164)
63 2l9r_A Homeobox protein NKX-3. 99.6 4.2E-15 1.4E-19 97.5 6.6 55 9-66 9-63 (69)
64 1wh7_A ZF-HD homeobox family p 99.6 2.5E-15 8.7E-20 101.0 4.9 57 7-64 20-78 (80)
65 1au7_A Protein PIT-1, GHF-1; c 99.5 7.6E-15 2.6E-19 108.5 7.0 56 7-65 90-145 (146)
66 2xsd_C POU domain, class 3, tr 99.5 6.2E-15 2.1E-19 111.0 6.5 58 7-67 102-159 (164)
67 1e3o_C Octamer-binding transcr 99.5 7.6E-15 2.6E-19 109.8 6.9 56 7-65 104-159 (160)
68 2da6_A Hepatocyte nuclear fact 99.5 1.5E-14 5E-19 101.6 7.7 59 6-67 8-87 (102)
69 1lfb_A Liver transcription fac 99.5 1.5E-14 5.1E-19 100.9 6.8 57 7-66 12-89 (99)
70 1wi3_A DNA-binding protein SAT 99.5 2.2E-14 7.5E-19 94.0 6.0 58 5-65 8-66 (71)
71 2cqx_A LAG1 longevity assuranc 99.5 2E-14 6.9E-19 94.6 5.3 59 6-66 10-68 (72)
72 3l1p_A POU domain, class 5, tr 99.5 2.8E-14 9.6E-19 106.3 6.1 56 7-65 99-154 (155)
73 1x2m_A LAG1 longevity assuranc 99.5 3.6E-14 1.2E-18 91.9 5.5 51 14-66 10-60 (64)
74 1mh3_A Maltose binding-A1 home 99.4 3.5E-13 1.2E-17 110.4 5.0 53 8-63 369-421 (421)
75 1ic8_A Hepatocyte nuclear fact 99.3 3.9E-13 1.3E-17 103.8 3.3 56 6-64 117-193 (194)
76 2h8r_A Hepatocyte nuclear fact 99.3 1.1E-12 3.8E-17 103.0 5.7 53 7-62 145-218 (221)
77 2da7_A Zinc finger homeobox pr 99.3 2E-12 6.7E-17 85.0 5.7 47 13-62 14-60 (71)
78 2nzz_A Penetratin conjugated G 97.6 6.9E-06 2.3E-10 47.4 -0.6 19 49-67 1-19 (37)
79 2ys9_A Homeobox and leucine zi 96.6 0.002 6.7E-08 41.9 3.9 44 12-58 14-57 (70)
80 1hlv_A CENP-B, major centromer 90.3 0.81 2.8E-05 31.1 6.2 52 6-63 3-54 (131)
81 3hug_A RNA polymerase sigma fa 88.2 0.79 2.7E-05 29.6 4.6 49 10-66 37-85 (92)
82 2glo_A Brinker CG9653-PA; prot 87.2 0.69 2.3E-05 27.6 3.6 50 7-60 2-51 (59)
83 3mzy_A RNA polymerase sigma-H 87.0 1 3.5E-05 30.8 4.9 49 10-67 109-157 (164)
84 2o8x_A Probable RNA polymerase 85.9 0.9 3.1E-05 27.2 3.7 49 10-66 15-63 (70)
85 3c57_A Two component transcrip 85.2 2.2 7.5E-05 27.8 5.6 49 10-67 27-75 (95)
86 2p7v_B Sigma-70, RNA polymeras 83.6 1.5 5.2E-05 26.5 4.0 53 10-66 5-57 (68)
87 1p4w_A RCSB; solution structur 83.2 3.6 0.00012 27.4 6.0 50 7-65 31-80 (99)
88 2rnj_A Response regulator prot 82.9 2.7 9.2E-05 27.0 5.2 48 10-66 29-76 (91)
89 1tc3_C Protein (TC3 transposas 82.5 2.2 7.4E-05 23.1 4.1 41 9-57 4-44 (51)
90 1tty_A Sigma-A, RNA polymerase 81.6 1.9 6.5E-05 27.6 4.1 53 10-66 18-70 (87)
91 1je8_A Nitrate/nitrite respons 81.3 2.8 9.5E-05 26.5 4.8 49 9-66 20-68 (82)
92 1x3u_A Transcriptional regulat 80.9 2.2 7.5E-05 26.2 4.1 47 11-66 17-63 (79)
93 1s7o_A Hypothetical UPF0122 pr 80.3 2.4 8.3E-05 28.9 4.4 49 10-66 22-70 (113)
94 2jn6_A Protein CGL2762, transp 80.2 3.6 0.00012 26.5 5.1 45 7-58 2-47 (97)
95 1ku3_A Sigma factor SIGA; heli 80.1 2.8 9.7E-05 25.6 4.4 53 10-66 10-63 (73)
96 1or7_A Sigma-24, RNA polymeras 79.9 1.8 6.1E-05 30.7 3.8 49 11-67 141-189 (194)
97 1rp3_A RNA polymerase sigma fa 79.5 1.5 5.3E-05 31.9 3.4 50 10-67 187-236 (239)
98 2elh_A CG11849-PA, LD40883P; s 77.7 9.6 0.00033 24.2 6.5 46 7-60 19-64 (87)
99 2q1z_A RPOE, ECF SIGE; ECF sig 77.4 1.4 4.8E-05 31.0 2.6 47 11-65 136-182 (184)
100 1fse_A GERE; helix-turn-helix 76.3 6.2 0.00021 23.6 5.1 49 8-65 9-57 (74)
101 1xsv_A Hypothetical UPF0122 pr 76.2 2.8 9.6E-05 28.4 3.7 49 10-66 25-73 (113)
102 1iuf_A Centromere ABP1 protein 73.3 4.2 0.00014 28.5 4.2 53 3-60 4-62 (144)
103 3lsg_A Two-component response 71.2 11 0.00037 24.2 5.6 41 15-58 3-43 (103)
104 2jpc_A SSRB; DNA binding prote 70.5 4.6 0.00016 23.4 3.3 29 38-66 17-45 (61)
105 2lfw_A PHYR sigma-like domain; 69.5 6.9 0.00023 27.2 4.6 50 10-67 93-142 (157)
106 2rn7_A IS629 ORFA; helix, all 68.3 13 0.00046 24.1 5.6 52 7-59 3-55 (108)
107 3clo_A Transcriptional regulat 67.9 9.1 0.00031 29.0 5.3 49 9-66 196-244 (258)
108 1jko_C HIN recombinase, DNA-in 67.3 3.2 0.00011 22.8 2.0 21 37-57 24-44 (52)
109 3bd1_A CRO protein; transcript 65.8 3.4 0.00012 25.4 2.1 23 37-59 14-36 (79)
110 3t72_q RNA polymerase sigma fa 65.3 13 0.00044 24.7 5.0 53 10-66 19-71 (99)
111 2xi8_A Putative transcription 64.1 3.2 0.00011 24.0 1.6 22 37-58 17-38 (66)
112 2r1j_L Repressor protein C2; p 63.9 3.4 0.00012 24.1 1.7 22 37-58 21-42 (68)
113 1zug_A Phage 434 CRO protein; 62.2 3.5 0.00012 24.3 1.6 23 37-59 19-41 (71)
114 2lv7_A Calcium-binding protein 60.8 31 0.001 22.3 6.4 51 6-56 25-79 (100)
115 3bs3_A Putative DNA-binding pr 60.6 4.2 0.00014 24.3 1.8 22 37-58 26-47 (76)
116 3ulq_B Transcriptional regulat 60.2 13 0.00044 24.0 4.2 48 8-64 27-74 (90)
117 1adr_A P22 C2 repressor; trans 59.6 4.4 0.00015 24.2 1.7 22 37-58 21-42 (76)
118 2b5a_A C.BCLI; helix-turn-heli 58.4 4.7 0.00016 24.1 1.7 22 37-58 26-47 (77)
119 1r69_A Repressor protein CI; g 58.3 4.7 0.00016 23.5 1.6 22 37-58 17-38 (69)
120 2wiu_B HTH-type transcriptiona 57.6 6.6 0.00023 24.2 2.4 39 14-59 12-50 (88)
121 3omt_A Uncharacterized protein 57.1 5.2 0.00018 24.0 1.7 22 37-58 24-45 (73)
122 2q0o_A Probable transcriptiona 57.0 13 0.00044 27.6 4.3 49 8-65 173-221 (236)
123 1irz_A ARR10-B; helix-turn-hel 56.2 34 0.0011 21.3 6.7 61 4-65 3-63 (64)
124 2a6c_A Helix-turn-helix motif; 56.0 5.9 0.0002 24.6 1.9 23 37-59 34-56 (83)
125 1l0o_C Sigma factor; bergerat 55.8 2.4 8.3E-05 30.8 0.0 45 11-63 199-243 (243)
126 3b7h_A Prophage LP1 protein 11 55.6 5.5 0.00019 23.9 1.7 23 37-59 23-45 (78)
127 1y7y_A C.AHDI; helix-turn-heli 55.3 5.7 0.0002 23.5 1.7 22 37-58 29-50 (74)
128 2x48_A CAG38821; archeal virus 54.6 7.9 0.00027 22.0 2.2 21 37-57 34-54 (55)
129 2kpj_A SOS-response transcript 52.1 6.6 0.00023 24.9 1.7 22 37-58 25-46 (94)
130 1l3l_A Transcriptional activat 51.9 17 0.00059 26.9 4.3 50 7-65 170-219 (234)
131 2pmy_A RAS and EF-hand domain- 51.7 21 0.00072 22.0 4.1 48 10-57 20-69 (91)
132 2ict_A Antitoxin HIGA; helix-t 51.4 7.5 0.00026 24.5 1.9 22 37-58 24-45 (94)
133 2ef8_A C.ECOT38IS, putative tr 50.9 7.5 0.00026 23.6 1.8 22 37-58 26-47 (84)
134 2hin_A GP39, repressor protein 50.0 13 0.00045 23.4 2.8 21 37-57 13-33 (71)
135 2k9q_A Uncharacterized protein 49.9 7 0.00024 23.7 1.5 22 37-58 18-39 (77)
136 1rzs_A Antirepressor, regulato 48.5 10 0.00034 22.6 2.0 19 37-55 13-31 (61)
137 3mn2_A Probable ARAC family tr 47.5 24 0.00083 22.7 4.0 40 15-58 3-42 (108)
138 3f6w_A XRE-family like protein 47.2 9.1 0.00031 23.3 1.7 22 37-58 30-51 (83)
139 1lmb_3 Protein (lambda repress 46.9 9.1 0.00031 23.8 1.7 22 37-58 33-54 (92)
140 2jrt_A Uncharacterized protein 46.6 36 0.0012 22.4 4.8 46 4-57 26-72 (95)
141 2q2k_A Hypothetical protein; p 46.4 7.3 0.00025 24.1 1.1 29 2-30 42-70 (70)
142 2v79_A DNA replication protein 46.2 41 0.0014 23.4 5.3 48 11-61 30-78 (135)
143 1hlv_A CENP-B, major centromer 46.0 41 0.0014 22.2 5.1 55 8-62 70-130 (131)
144 1neq_A DNA-binding protein NER 45.8 11 0.00036 23.6 1.9 21 37-57 25-45 (74)
145 3t76_A VANU, transcriptional r 44.1 10 0.00035 24.5 1.6 22 37-58 40-61 (88)
146 2l49_A C protein; P2 bacteriop 43.7 10 0.00036 23.9 1.6 23 37-59 20-42 (99)
147 3oio_A Transcriptional regulat 43.5 51 0.0017 21.3 5.2 41 14-58 7-47 (113)
148 1jhf_A LEXA repressor; LEXA SO 43.3 36 0.0012 24.4 4.8 45 10-57 3-49 (202)
149 1x57_A Endothelial differentia 43.0 12 0.0004 23.4 1.8 43 10-59 9-51 (91)
150 1pdn_C Protein (PRD paired); p 42.7 40 0.0014 21.5 4.5 46 9-57 74-126 (128)
151 3qq6_A HTH-type transcriptiona 42.6 18 0.00061 22.1 2.6 21 37-57 26-46 (78)
152 3qp6_A CVIR transcriptional re 42.4 40 0.0014 25.7 5.1 48 9-65 196-243 (265)
153 3s8q_A R-M controller protein; 42.0 12 0.0004 22.8 1.6 22 37-58 27-48 (82)
154 2ewt_A BLDD, putative DNA-bind 41.9 13 0.00043 21.8 1.7 22 37-58 24-47 (71)
155 3mkl_A HTH-type transcriptiona 41.9 28 0.00097 22.9 3.7 41 13-57 6-46 (120)
156 3kz3_A Repressor protein CI; f 41.3 55 0.0019 19.6 4.8 23 37-59 28-50 (80)
157 3lph_A Protein REV; helix-loop 41.0 11 0.00037 24.2 1.3 20 15-37 17-36 (72)
158 3oou_A LIN2118 protein; protei 41.0 38 0.0013 21.7 4.2 40 15-58 6-45 (108)
159 3fmy_A HTH-type transcriptiona 40.4 18 0.00063 21.8 2.4 22 37-58 27-48 (73)
160 1c07_A Protein (epidermal grow 40.2 51 0.0017 20.6 4.7 46 11-56 4-51 (95)
161 1u78_A TC3 transposase, transp 39.3 77 0.0026 20.7 5.7 43 8-58 4-46 (141)
162 2vn2_A DNAD, chromosome replic 38.9 77 0.0026 21.4 5.7 52 7-61 26-78 (128)
163 1pdn_C Protein (PRD paired); p 38.7 27 0.00093 22.4 3.2 45 9-61 16-60 (128)
164 3i5g_B Myosin regulatory light 38.3 76 0.0026 21.5 5.7 51 5-55 4-58 (153)
165 2ofy_A Putative XRE-family tra 37.8 15 0.00051 22.5 1.6 23 37-59 30-52 (86)
166 2pij_A Prophage PFL 6 CRO; tra 37.3 16 0.00056 21.2 1.7 20 37-56 16-35 (67)
167 1c05_A Ribosomal protein S4 de 37.2 21 0.00073 25.6 2.6 27 35-61 11-37 (159)
168 2a6h_F RNA polymerase sigma fa 37.1 49 0.0017 27.3 5.1 51 10-64 360-410 (423)
169 1fi6_A EH domain protein REPS1 37.0 56 0.0019 20.3 4.4 46 11-56 3-50 (92)
170 3cec_A Putative antidote prote 36.4 16 0.00056 23.4 1.7 22 37-58 34-55 (104)
171 1y66_A Engrailed homeodomain; 35.9 6.9 0.00024 22.9 -0.2 49 10-61 3-51 (52)
172 2k9s_A Arabinose operon regula 35.7 84 0.0029 19.9 5.5 40 16-58 5-44 (107)
173 3op9_A PLI0006 protein; struct 35.5 18 0.00061 23.5 1.8 23 37-59 25-47 (114)
174 1uxc_A FRUR (1-57), fructose r 35.2 19 0.00065 21.9 1.8 23 37-59 3-25 (65)
175 1k78_A Paired box protein PAX5 34.9 32 0.0011 23.3 3.2 45 9-61 31-75 (149)
176 1b0n_A Protein (SINR protein); 34.4 27 0.00094 22.2 2.6 21 37-57 17-37 (111)
177 2eby_A Putative HTH-type trans 34.3 18 0.00062 23.4 1.7 23 37-59 27-49 (113)
178 2k27_A Paired box protein PAX- 34.2 75 0.0026 21.7 5.1 49 9-60 82-137 (159)
179 3iyd_F RNA polymerase sigma fa 34.2 21 0.00073 30.9 2.6 54 10-67 550-603 (613)
180 3szt_A QCSR, quorum-sensing co 33.7 38 0.0013 25.2 3.7 48 8-64 173-220 (237)
181 1bl0_A Protein (multiple antib 33.3 69 0.0023 21.2 4.6 44 11-58 8-51 (129)
182 1l9z_H Sigma factor SIGA; heli 33.3 59 0.002 27.2 5.0 51 10-64 375-425 (438)
183 3ivp_A Putative transposon-rel 32.7 19 0.00065 23.9 1.6 23 37-59 28-50 (126)
184 3eus_A DNA-binding protein; st 32.6 21 0.00072 22.1 1.7 23 37-59 30-52 (86)
185 2ppx_A AGR_C_3184P, uncharacte 32.4 21 0.00073 22.7 1.8 21 37-57 46-66 (99)
186 2kta_A Putative helicase; PSI, 31.9 45 0.0015 21.1 3.2 35 16-64 13-47 (74)
187 3mlf_A Transcriptional regulat 31.8 22 0.00074 23.5 1.8 22 37-58 39-60 (111)
188 2jvl_A TRMBF1; coactivator, he 31.7 20 0.00068 23.5 1.6 43 10-59 30-74 (107)
189 3g5g_A Regulatory protein; tra 31.5 22 0.00074 23.0 1.7 22 37-58 44-65 (99)
190 3vk0_A NHTF, transcriptional r 31.4 19 0.00067 23.5 1.5 22 37-58 37-58 (114)
191 3i9v_2 NADH-quinone oxidoreduc 31.4 34 0.0012 25.1 3.0 25 29-53 38-62 (181)
192 1a04_A Nitrate/nitrite respons 31.2 96 0.0033 21.6 5.4 46 10-64 154-199 (215)
193 2opo_A Polcalcin CHE A 3; calc 30.7 85 0.0029 18.4 4.5 48 9-56 3-53 (86)
194 1zs4_A Regulatory protein CII; 30.5 31 0.0011 22.5 2.3 20 37-56 27-46 (83)
195 1x6i_A Hypothetical protein YG 30.0 77 0.0026 20.7 4.3 44 13-58 21-64 (91)
196 3k2z_A LEXA repressor; winged 30.0 55 0.0019 23.5 3.9 43 10-56 2-46 (196)
197 3f52_A CLP gene regulator (CLG 29.5 24 0.00083 23.0 1.7 23 37-59 44-66 (117)
198 1j9i_A GPNU1 DBD;, terminase s 29.2 39 0.0013 20.2 2.5 21 37-57 5-25 (68)
199 2w7n_A TRFB transcriptional re 28.8 1.3E+02 0.0044 20.0 5.8 45 10-62 18-62 (101)
200 3trb_A Virulence-associated pr 28.7 26 0.00088 23.1 1.7 23 37-59 30-52 (104)
201 3or1_C Sulfite reductase GAMA; 28.5 81 0.0028 21.3 4.2 39 14-57 48-86 (105)
202 3c3w_A Two component transcrip 28.1 99 0.0034 21.9 5.0 48 9-65 148-195 (225)
203 3lfp_A CSP231I C protein; tran 27.7 30 0.001 21.8 1.9 22 37-58 17-42 (98)
204 1xwr_A Regulatory protein CII; 27.2 33 0.0011 22.9 2.1 22 35-56 24-45 (97)
205 2q24_A Putative TETR family tr 27.0 28 0.00094 23.9 1.7 44 16-61 18-61 (194)
206 3bhq_A Transcriptional regulat 26.9 22 0.00075 24.9 1.2 57 1-60 2-58 (211)
207 2kgr_A Intersectin-1; structur 26.6 1.3E+02 0.0045 19.3 5.5 50 7-56 4-55 (111)
208 1puz_A Conserved hypothetical 26.2 68 0.0023 20.5 3.4 44 13-58 21-64 (82)
209 2x7l_M HIV REV; nuclear export 26.2 25 0.00086 24.4 1.3 18 16-36 15-32 (115)
210 2fjr_A Repressor protein CI; g 26.1 29 0.00099 24.5 1.7 24 36-59 22-45 (189)
211 1bjf_A Neurocalcin delta; calc 26.0 74 0.0025 21.6 3.9 30 31-60 7-36 (193)
212 2l8n_A Transcriptional repress 25.7 37 0.0013 20.7 1.9 22 37-58 12-33 (67)
213 2qwt_A Transcriptional regulat 25.6 45 0.0015 23.0 2.7 42 17-60 17-58 (196)
214 2ktg_A Calmodulin, putative; e 25.3 1.1E+02 0.0037 17.8 5.1 49 8-56 5-57 (85)
215 3kxa_A NGO0477 protein, putati 24.7 34 0.0011 23.7 1.8 22 37-58 84-105 (141)
216 2joj_A Centrin protein; N-term 24.5 1E+02 0.0036 17.4 4.3 46 11-56 1-50 (77)
217 3bdn_A Lambda repressor; repre 24.3 30 0.001 25.3 1.5 22 37-58 33-54 (236)
218 2vqe_D 30S ribosomal protein S 24.2 65 0.0022 24.1 3.4 29 35-63 59-87 (209)
219 2cw1_A SN4M; lambda CRO fold, 23.6 36 0.0012 20.8 1.6 20 36-55 15-34 (65)
220 2ld7_A Histone deacetylase com 23.4 79 0.0027 21.0 3.3 60 5-65 18-84 (94)
221 3o9x_A Uncharacterized HTH-typ 23.0 37 0.0013 22.6 1.7 20 39-58 89-108 (133)
222 2o38_A Hypothetical protein; a 22.8 37 0.0013 22.9 1.6 23 37-59 56-78 (120)
223 2wui_A MEXZ, transcriptional r 22.7 64 0.0022 22.4 3.0 45 16-61 14-58 (210)
224 4ghj_A Probable transcriptiona 22.6 55 0.0019 21.5 2.5 21 37-57 52-72 (101)
225 2jml_A DNA binding domain/tran 22.3 42 0.0014 20.7 1.8 17 38-54 9-25 (81)
226 3r8n_D 30S ribosomal protein S 22.1 78 0.0027 23.9 3.5 27 35-61 55-81 (205)
227 1y9q_A Transcriptional regulat 22.1 37 0.0013 24.0 1.6 23 37-59 27-49 (192)
228 2l4h_A Calcium and integrin-bi 21.9 44 0.0015 24.1 2.0 29 32-60 31-59 (214)
229 3lwj_A Putative TETR-family tr 21.8 32 0.0011 23.5 1.2 45 16-61 15-59 (202)
230 3ppb_A Putative TETR family tr 21.1 59 0.002 21.7 2.5 43 17-60 13-55 (195)
231 2bnm_A Epoxidase; oxidoreducta 21.0 44 0.0015 23.6 1.8 23 37-59 26-48 (198)
232 1yio_A Response regulatory pro 21.0 1.6E+02 0.0053 20.2 4.8 45 11-64 143-187 (208)
233 1k78_A Paired box protein PAX5 20.8 1.9E+02 0.0066 19.2 6.1 47 9-58 89-142 (149)
234 2iw5_B Protein corest, REST co 20.7 2.9E+02 0.01 21.3 6.5 52 5-63 130-182 (235)
235 1tuz_A Diacylglycerol kinase a 20.4 40 0.0014 23.2 1.4 29 31-59 7-35 (118)
236 2d8n_A Recoverin; structural g 20.3 1.1E+02 0.0039 21.0 3.9 31 29-59 13-43 (207)
237 1rr7_A Middle operon regulator 20.2 75 0.0026 21.9 2.9 26 36-61 94-119 (129)
238 1dtl_A Cardiac troponin C; hel 20.0 1.8E+02 0.0063 18.6 6.2 48 9-56 10-62 (161)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=132.01 Aligned_cols=62 Identities=32% Similarity=0.513 Sum_probs=59.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|..|+++++.+|+.||.+|..||||+.++|.+||..|||++.||.+||+|+|+|.|+.+.
T Consensus 9 k~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 9 KRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 47889999999999999999999999999999999999999999999999999999998764
No 2
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=133.98 Aligned_cols=58 Identities=38% Similarity=0.621 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.-|+++++.+|++||.+|..||||+.++|.+||.+|||++.||+|||+|+|+|.++.+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 4689999999999999999999999999999999999999999999999999999875
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=5.6e-21 Score=124.56 Aligned_cols=59 Identities=36% Similarity=0.604 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
..|+++++.+|+.||.+|..||||+.++|.+||..|||+..||.+||+|+|+|.|+.+.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 47999999999999999999999999999999999999999999999999999998763
No 4
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.2e-20 Score=124.18 Aligned_cols=62 Identities=37% Similarity=0.599 Sum_probs=58.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|..|+.+++.+|+.||.+|..+|||+.+++.+||..+||++.||.+||+|+|+|.|+.+.
T Consensus 9 r~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 9 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 36789999999999999999999999999999999999999999999999999999998763
No 5
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.82 E-value=2.2e-20 Score=118.56 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=56.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
+|+.|+.+++.+|+.||..|..+|||+.+++.+||..+||++.||.+||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 57899999999999999999999999999999999999999999999999999998864
No 6
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=1.1e-20 Score=121.48 Aligned_cols=59 Identities=34% Similarity=0.502 Sum_probs=56.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
.+|..|+.+++.+|+.||.+|..+|||+.+++.+||..+||++.||.+||+|+|+|.|+
T Consensus 5 r~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 5 IEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 37889999999999999999999999999999999999999999999999999999875
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.82 E-value=3.1e-20 Score=122.20 Aligned_cols=62 Identities=32% Similarity=0.430 Sum_probs=59.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.||.+|..+|||+.+++..||..+||++.||.+||+|+|+|.|+...
T Consensus 3 r~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 47899999999999999999999999999999999999999999999999999999998754
No 8
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.81 E-value=5.3e-20 Score=124.73 Aligned_cols=62 Identities=32% Similarity=0.430 Sum_probs=59.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.||.+|..+|||+.+++.+||..+||++.||.+||+|+|+|.|+...
T Consensus 3 r~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 47899999999999999999999999999999999999999999999999999999998764
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.80 E-value=1.2e-19 Score=122.42 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
..+|+.|+.+++.+|+.||..|..+|||+..++.+||..+||++.||.+||+|+|+|.|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 34677799999999999999999999999999999999999999999999999999988764
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.79 E-value=2.1e-19 Score=122.09 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhh
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k 63 (140)
..+|+.|+.+++.+|+.||..|..+|||+.+++.+||..+||++.||.+||+|+|+|.|
T Consensus 28 ~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 28 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 34788999999999999999999999999999999999999999999999999999976
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=7.4e-19 Score=117.59 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=59.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcccCCCCC
Q psy10107 4 NMVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEP 72 (140)
Q Consensus 4 ~~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~~~~~p 72 (140)
++..|..||++|+.+|+.|| ..||||+.+++.+||..|||++.||.+||+|+|.|.|+..- .|.-
T Consensus 3 ~g~~r~kfT~~Ql~~Le~~F---~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l-~w~~ 67 (76)
T 2ecc_A 3 SGSSGKRKTKEQLAILKSFF---LQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL-KWFR 67 (76)
T ss_dssp CSCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC-SSTT
T ss_pred CCCCCCCCCHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH-HHHH
Confidence 46789999999999999999 88999999999999999999999999999999999998743 4543
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.73 E-value=5.1e-18 Score=107.78 Aligned_cols=55 Identities=25% Similarity=0.224 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhh
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k 63 (140)
.+|+.|+.+++.+|+.|| ..+|||+..++.+||..+||++.||.+||+|+|+|.|
T Consensus 7 r~Rt~ft~~q~~~Le~~f---~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 7 KGKSSISPQARAFLEEVF---RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -----CCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHHH---HhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 367899999999999999 7789999999999999999999999999999999864
No 13
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=5.9e-18 Score=107.37 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=50.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
+|+.|+.++..+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAF---SRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 58999999999999999 88999999999999999999999999999999999987643
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=108.53 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 9 r~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 9 RHRTIFTDEQLEALENLF---QETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 478899999999999999 78999999999999999999999999999999999998764
No 15
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=1.4e-17 Score=107.53 Aligned_cols=58 Identities=28% Similarity=0.293 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+|+.|+.++..+|+.+| ..+|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 5 r~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 5 RVRTVLNEKQLHTLRTCY---AANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCCCCCSHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 378999999999999999 7799999999999999999999999999999999988764
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.8e-17 Score=104.22 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
.+|+.|+.++..+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+
T Consensus 2 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKF---RQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 478999999999999999 88999999999999999999999999999999999875
No 17
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=107.83 Aligned_cols=59 Identities=31% Similarity=0.428 Sum_probs=55.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 9 KPRTIYSSFQLAALQRRF---QKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CSSCSSCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCHHHHHHHHHHH---cCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 378899999999999999 99999999999999999999999999999999999887653
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.71 E-value=1.8e-17 Score=105.41 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=52.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
.+|+.|+.++..+|+.+| ..+|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 5 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 5 RPRTAFSSEQLARLKREF---NENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp --CCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 478999999999999999 88999999999999999999999999999999999886
No 19
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.9e-17 Score=108.03 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 9 KKRIPYSKGQLRELEREY---AANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CSCCCSCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCcCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 368899999999999999 88999999999999999999999999999999999988753
No 20
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=2.2e-17 Score=104.72 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
.+|+.|+.++..+|+.+| ..+|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 3 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 3 RYRTAFTRDQLGRLEKEF---YKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 478999999999999999 889999999999999999999999999999999998874
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.5e-17 Score=107.54 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|..|+.+++.+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+...
T Consensus 9 r~R~~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 9 GGQVRFSNDQTIELEKKF---ETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 378899999999999999 88999999999999999999999999999999999998764
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.70 E-value=2.6e-17 Score=107.06 Aligned_cols=62 Identities=29% Similarity=0.328 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcccCC
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 69 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~~~ 69 (140)
-.+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHH---HHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCcCHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 3578999999999999999 8899999999999999999999999999999999999987643
No 23
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=105.69 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..+|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 3 r~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 3 RPRTAFTQNQIEVLENVF---RVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCSCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 478999999999999999 89999999999999999999999999999999999987653
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=108.29 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=55.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 9 r~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 9 RPRTRITDDQLRVLRQYF---DINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCSCCCCHHHHHHHHHHH---HHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCHHHHHHHHHHH---HHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 378899999999999999 88999999999999999999999999999999999998754
No 25
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=107.28 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..+|||+..++..||..+||++.||.+||+|+|.|.|+..+
T Consensus 9 r~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 9 SSRTRFTDYQLRVLQDFF---DANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 378899999999999999 88999999999999999999999999999999999988753
No 26
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=108.20 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 11 ~R~~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSF---CRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCHHHHHHHHHHH---HHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCccCCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 68999999999999999 88999999999999999999999999999999999988754
No 27
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.70 E-value=2.9e-17 Score=105.18 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
.+|+.|+..++.+|+.+| ..+|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 5 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 5 RTRTAYTRAQLLELEKEF---LFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 478999999999999999 889999999999999999999999999999999999875
No 28
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=109.39 Aligned_cols=59 Identities=29% Similarity=0.359 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|+|.|+..+
T Consensus 19 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 19 RSRTVFTELQLMGLEKRF---EKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CSCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 367889999999999999 88999999999999999999999999999999999998764
No 29
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.5e-17 Score=107.44 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcccC
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~~ 68 (140)
+.+|+.|+.+++.+|+.+| ..++||+..++..||..+||++.||.+||+|+|.|.|+..+.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSF---AQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCccCCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 4578899999999999999 889999999999999999999999999999999999988654
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=101.09 Aligned_cols=55 Identities=31% Similarity=0.403 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhh
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k 63 (140)
.+|+.|+..+..+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|
T Consensus 4 r~Rt~~t~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 4 KPRVLFSQAQVYELERRF---KQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 468999999999999999 8999999999999999999999999999999999865
No 31
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.3e-16 Score=104.97 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 4 NMVPEYVGTEIYKATLKAWLNEHK-KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 4 ~~~~R~~~~~~~~~~L~~w~~~h~-~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
....|+.|+.+++.+|+.+| . .++||+..++..||..+||++.||.+||+|+|.|.|+..+
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F---~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNF---NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHH---HHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 8 5999999999999999999999999999999999998764
No 32
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=109.65 Aligned_cols=58 Identities=21% Similarity=0.137 Sum_probs=54.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
+|+.|+.+++.+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+...
T Consensus 20 ~Rt~ft~~Ql~~Le~~f---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 20 LRTTITPEQLEILYQKY---LLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCSSCCTTTHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 67899999999999999 88899999999999999999999999999999999998753
No 33
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.69 E-value=4.7e-17 Score=103.77 Aligned_cols=57 Identities=26% Similarity=0.323 Sum_probs=52.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
.+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+.
T Consensus 5 r~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 5 KMRTVFSQAQLCALKDRF---QKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ---CCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 478999999999999999 889999999999999999999999999999999998864
No 34
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=108.98 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCC----CCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKN----PYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~n----PYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
+|+.|+.+++.+|+.|| ..+ |||+..++.+||..+||++.||.+||+|+|+|.|+..
T Consensus 11 ~Rt~ft~~Q~~~Le~~F---~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 11 DRTQFSDRDLATLKKYW---DNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp SSCCCCHHHHHHHHHHH---TTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHH---HhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 67889999999999999 666 9999999999999999999999999999999999864
No 35
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.68 E-value=6.7e-17 Score=106.43 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+...
T Consensus 9 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 9 KKRVPYTKVQLKELEREY---ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCSCHHHHHHHHHHH---HHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCHHHHHHHHHHH---hhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 378899999999999999 88999999999999999999999999999999999998754
No 36
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.68 E-value=6.3e-17 Score=108.33 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=54.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+|+.|+.+++.+|+.+| ..+|||+..++..||..+||++.||.+||+|+|+|.|+..
T Consensus 20 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 20 RSRTTFSASQLDELERAF---ERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 367899999999999999 7899999999999999999999999999999999998764
No 37
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=6.4e-17 Score=107.87 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=55.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..++||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 9 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 9 RMRTSFKHHQLRTMKSYF---AINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 378999999999999999 88999999999999999999999999999999999998753
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=9.2e-17 Score=105.34 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=55.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~-nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
..|+.|+.+++.+|+.+| .. ++||+..++..||..+||++.||.+||+|+|.|.|+..+
T Consensus 3 k~Rt~ft~~Q~~~Le~~F---~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNF---NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCHHHHHHHHHHH---HSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHH---HccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 478999999999999999 86 999999999999999999999999999999999998764
No 39
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=9.2e-17 Score=107.41 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=55.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 9 RNRTSFTQEQIEALEKEF---ERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CCCCCSCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 478899999999999999 99999999999999999999999999999999999998754
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.68 E-value=6.1e-17 Score=101.49 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
+.|+.++..+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+.
T Consensus 2 T~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRF---LRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH---HhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 468999999999999 889999999999999999999999999999999998874
No 41
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=9.9e-17 Score=104.19 Aligned_cols=59 Identities=25% Similarity=0.250 Sum_probs=56.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..++||+..++..||..+||++.||.+||+|+|.|.|+..+
T Consensus 4 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 4 RTRTTFTSSQIAELEQHF---LQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCSCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 478999999999999999 99999999999999999999999999999999999998754
No 42
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=8.6e-17 Score=107.44 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 9 RERTTFTRAQLDVLEALF---AKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCSSCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 478899999999999999 88999999999999999999999999999999999998764
No 43
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=1.2e-16 Score=103.82 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=56.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
-.+|+.|+.+++.+|+.+| ..++||+..++..||..+||++.||.+||+|+|.|.|+..+
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRF---KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHH---HHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCccCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 3578999999999999999 88999999999999999999999999999999999998764
No 44
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.67 E-value=4.2e-17 Score=105.88 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=55.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+.+++.+|+.+| ..+|||+..++..||..+||++.||.+||+|+|.|.|+..+
T Consensus 5 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 5 RQRTHFTSQQLQQLEATF---QRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSCCCCCHHHHHHHHHHH---TTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 478999999999999999 89999999999999999999999999999999999988754
No 45
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.67 E-value=1.2e-16 Score=106.11 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
+|+.|+..++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+...
T Consensus 12 ~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 12 RRVLFTKAQTYELERRF---RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 67889999999999999 88999999999999999999999999999999999987653
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.66 E-value=1.4e-16 Score=106.90 Aligned_cols=58 Identities=29% Similarity=0.371 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 23 ~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 23 GRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -CCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCcccCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 67899999999999999 88999999999999999999999999999999999998753
No 47
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=107.14 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
+|+.|+..++.+|+.+| ..++||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 25 ~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 25 TRTVFSSTQLCVLNDRF---QRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSSCCCHHHHHHHHHHH---HHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999 8899999999999999999999999999999999988764
No 48
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.66 E-value=2.1e-16 Score=107.37 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..
T Consensus 30 r~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 30 RQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -CCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 378899999999999999 9999999999999999999999999999999999998764
No 49
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.66 E-value=1.3e-16 Score=105.91 Aligned_cols=59 Identities=29% Similarity=0.315 Sum_probs=55.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+|+.|+..++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 15 r~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 15 KKRCPYTKHQTLELEKEF---LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH---hccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 367889999999999999 88999999999999999999999999999999999988653
No 50
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=102.28 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=55.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
..|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+...
T Consensus 8 ~~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 8 GIRAKKTKEQLAELKVSY---LKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CTTCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCcCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 478999999999999999 88999999999999999999999999999999999987754
No 51
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.6e-16 Score=108.05 Aligned_cols=59 Identities=19% Similarity=0.140 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
+.+.+.|+.+|+.+|+.+| ..++||+..++.+||..|||++.||.+||+|+|+|.++..
T Consensus 12 p~k~k~~t~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 12 PQKFKEKTAEQLRVLQASF---LNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred chhhccCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3456789999999999999 8899999999999999999999999999999999987654
No 52
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=106.77 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
+.+++.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 14 p~k~k~~t~~Ql~~Le~~F---~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 14 PQKFKEKTQGQVKILEDSF---LKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp SSCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccccCCHHHHHHHHHHH---ccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 4567789999999999999 88999999999999999999999999999999999887754
No 53
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=102.82 Aligned_cols=52 Identities=25% Similarity=0.422 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 11 GTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
-+++|+..|+..| ..++||+..++.+||..|||+..||.+||+|+|.|.|+.
T Consensus 11 ~~~~Ql~~LE~~F---~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASF---LQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHH---HGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4789999999999 999999999999999999999999999999999998864
No 54
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=102.44 Aligned_cols=58 Identities=26% Similarity=0.377 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.|+.|+..+..+|+.+| ..++||+..++..||..+||++.||.+||+|+|.|.|+..+
T Consensus 12 ~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 12 NRTTFTSYQLEELEKVF---QKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCSSCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 57889999999999999 88999999999999999999999999999999999988754
No 55
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=100.01 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=53.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
+.++..++++++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.++
T Consensus 4 g~~~~~p~~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 4 GSSGQPPLKNLLSLLKAYY---ALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCSCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCCCccHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4567788899999999999 99999999999999999999999999999999998764
No 56
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.64 E-value=3.5e-16 Score=107.61 Aligned_cols=58 Identities=34% Similarity=0.448 Sum_probs=55.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
+|+.|+.+++.+|+.+| ..++||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 20 ~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 20 PRTSFTRIQVAELEKRF---HKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 67889999999999999 88999999999999999999999999999999999998864
No 57
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=5.2e-16 Score=107.26 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=55.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 37 ~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 37 LRTNFTTRQLTELEKEF---HFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 58999999999999999 99999999999999999999999999999999999998753
No 58
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=2.6e-16 Score=105.72 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=52.6
Q ss_pred CCCCCCHHHHHHHHHHHHh-hcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 7 PEYVGTEIYKATLKAWLNE-HKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~-h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
+|+.|+.+|+..|+.+|.. |..+|||+..++.+||..+||++.||.+||||+|.+.|.
T Consensus 20 ~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 20 HRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 6788999999999999942 345999999999999999999999999999999999775
No 59
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=6.2e-16 Score=106.50 Aligned_cols=58 Identities=22% Similarity=0.480 Sum_probs=55.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------CChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITK---------------MTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tg---------------Lt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.|+.|+..++.+|+.|| ..+|||+..++.+||..++ |++.||.+||+|+|.|.|+..+
T Consensus 10 ~R~~ft~~ql~~Le~~F---~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYF---NENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CSCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 67899999999999999 7799999999999999999 9999999999999999998765
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=105.05 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=54.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+|+.|+.+++.+|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..
T Consensus 27 r~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 27 GKICKKTPEQLHMLKSAF---VRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp CCSSSSCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCccCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 367899999999999999 8899999999999999999999999999999999999864
No 61
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=112.43 Aligned_cols=55 Identities=31% Similarity=0.379 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
+|+.|+.+++.+|+.|| ..+|||+..++.+||..+||++.||.+||+|+|+|.|+
T Consensus 96 ~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 96 RRTSFTPQAIEALNAYF---EKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 67889999999999999 77999999999999999999999999999999999886
No 62
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.59 E-value=1.3e-15 Score=113.88 Aligned_cols=58 Identities=34% Similarity=0.452 Sum_probs=53.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+|+.|+.+++.+|+.|| ..+|||+..++.+||..+||++.||.+||+|+|+|.|+..
T Consensus 99 r~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 99 KPRLVFTDVQRRTLHAIF---KENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCcCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 367899999999999999 7789999999999999999999999999999999988764
No 63
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=97.48 Aligned_cols=55 Identities=27% Similarity=0.323 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
..++..+...|+.+| ..++||+..++.+||..+||++.||.+||+|+|.|.|+..
T Consensus 9 ~~~t~~ql~~LE~~F---~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKF---SHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 467899999999999 8999999999999999999999999999999999988764
No 64
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.56 E-value=2.5e-15 Score=101.01 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=51.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 7 PEYVGTEIYKATLKAWLNEHK--KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~--~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
+|+.|+.+|+..|+ -|.+|. .++||+..++.+||..+||++.||.+||+|+|.+.|+
T Consensus 20 ~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 20 FRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 67889999999999 575543 3999999999999999999999999999999999775
No 65
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.55 E-value=7.6e-15 Score=108.48 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
+|+.|+.+++.+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+.
T Consensus 90 ~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 90 RRTTISIAAKDALERHF---GEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCcCccHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 67899999999999999 889999999999999999999999999999999998864
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.55 E-value=6.2e-15 Score=110.96 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
+|+.|+..++.+|+.+| ..+|||+..++.+||..+||++.||.+||+|+|.|.|+..+
T Consensus 102 ~Rt~ft~~Ql~~LE~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 102 KRTSIEVGVKGALESHF---LKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----CCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred CceeccHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 67899999999999999 88999999999999999999999999999999999998753
No 67
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.54 E-value=7.6e-15 Score=109.80 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
+|+.|+..++.+|+.+| ..+|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 104 ~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 104 KRTSIETNIRVALEKSF---MENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CccccCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 67899999999999999 889999999999999999999999999999999998875
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=101.57 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh---------------------CCChhhHhHhhhhHHHhhhh
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIIT---------------------KMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~t---------------------gLt~~QV~nWF~N~R~R~k~ 64 (140)
..|+.|++.++.+|+.+| ..+|||+.++|++||..+ +|++.+|.+||+|+|.|.|+
T Consensus 8 r~Rt~ft~~ql~~Le~~F---~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 8 RNRFKWGPASQQILYQAY---DRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CCCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHH---cCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 367889999999999999 999999999999999999 79999999999999999987
Q ss_pred ccc
Q psy10107 65 ENK 67 (140)
Q Consensus 65 ~~~ 67 (140)
..+
T Consensus 85 ~~~ 87 (102)
T 2da6_A 85 RQK 87 (102)
T ss_dssp HHH
T ss_pred hhH
Confidence 653
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.53 E-value=1.5e-14 Score=100.94 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH------------------hC---CChhhHhHhhhhHHHhhhhc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAII------------------TK---MTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~------------------tg---Lt~~QV~nWF~N~R~R~k~~ 65 (140)
.|+.|+..++.+|+.+| ..+|||+..+|.+||.. +| |++.||.+||+|+|.+.|+.
T Consensus 12 ~Rt~ft~~Ql~~LE~~F---~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k 88 (99)
T 1lfb_A 12 NRFKWGPASQQILFQAY---ERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 88 (99)
T ss_dssp -CCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CCcCcCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHh
Confidence 67899999999999999 99999999999999999 88 99999999999999988765
Q ss_pred c
Q psy10107 66 N 66 (140)
Q Consensus 66 ~ 66 (140)
.
T Consensus 89 ~ 89 (99)
T 1lfb_A 89 H 89 (99)
T ss_dssp C
T ss_pred c
Confidence 4
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=2.2e-14 Score=93.97 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~-nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
..+|+.|+.+|..+|+..| .. ++||+.+.++.||.+|||++.+|..||||+|--.+-.
T Consensus 8 kR~RT~~s~eQL~~Lqs~f---~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 8 PRSRTKISLEALGILQSFI---HDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCSHHHHHHHHHH---HHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCccCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCC
Confidence 3478999999999999999 88 9999999999999999999999999999999876644
No 71
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=2e-14 Score=94.65 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
..|+.++.++..+|+..| ...++||+..++.+||..+||++.||.+||+|+|.+.|+..
T Consensus 10 k~r~r~~~~ql~~LE~~F--~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVF--VSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCSCSCSTTHHHHHH--HHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCHHHHHHHHHHH--HhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 467789999999999998 35678999999999999999999999999999999988664
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.49 E-value=2.8e-14 Score=106.28 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
+|+.|+..++.+|+.+| ..+|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 99 ~Rt~ft~~Q~~~Le~~F---~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 99 KRTSIENRVRWSLETMF---LKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCCCCHHHHHHHHTTT---TTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHHH---ccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 67889999999999999 899999999999999999999999999999999998863
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=3.6e-14 Score=91.88 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 14 IYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 14 ~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+..+|+..| ...+.||+..++.+||.++||++.||.+||+|+|.+.|+..
T Consensus 10 ~~~~~LE~~F--~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 10 QPNAILEKVF--TAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp CHHHHHHHHH--HTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred hHHHHHHHHH--HHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 4688999998 22478999999999999999999999999999999988654
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.36 E-value=3.5e-13 Score=110.44 Aligned_cols=53 Identities=26% Similarity=0.249 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhh
Q psy10107 8 EYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (140)
Q Consensus 8 R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k 63 (140)
|..|+..++..|+..| ..+|||+..+|.+||++|||++.||++||+|+|+|.|
T Consensus 369 ~~~~~~~q~~~Le~~f---~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVF---RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4678999999999999 8999999999999999999999999999999999865
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.34 E-value=3.9e-13 Score=103.83 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------------CChhhHhHhhhhHHHhhhh
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITK---------------------MTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tg---------------------Lt~~QV~nWF~N~R~R~k~ 64 (140)
..|+.|++.++.+|+.+| ..+|||+..+|.+||..++ |++.||.+||+|+|++.|.
T Consensus 117 r~R~~ft~~ql~~Le~~F---~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 117 RNRFKWGPASQQILFQAY---ERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCcccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 357889999999999999 8899999999999999999 9999999999999999764
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=103.05 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC---------------------CChhhHhHhhhhHHHhh
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITK---------------------MTLTQVSTWFANARRRL 62 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tg---------------------Lt~~QV~nWF~N~R~R~ 62 (140)
.|+.|++.++.+|+.|| ..+|||+..+|++||..|+ ||+.||.|||+|+|++.
T Consensus 145 ~R~~ft~~ql~~Le~~F---~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 145 NRFKWGPASQQILYQAY---DRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCcCCCHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 56789999999999999 7899999999999999988 89999999999999874
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2e-12 Score=84.98 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhh
Q psy10107 13 EIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62 (140)
Q Consensus 13 ~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~ 62 (140)
++++.+|+++| ..||||+.+++..||..+||+...|..||+|+|.+.
T Consensus 14 k~ql~~Lk~yF---~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYY---AMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 68899999999 999999999999999999999999999999999853
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.58 E-value=6.9e-06 Score=47.37 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=16.4
Q ss_pred hhHhHhhhhHHHhhhhccc
Q psy10107 49 TQVSTWFANARRRLKKENK 67 (140)
Q Consensus 49 ~QV~nWF~N~R~R~k~~~~ 67 (140)
.||.+||+|+|.|.|+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 4899999999999988753
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.64 E-value=0.002 Score=41.89 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 12 ~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
++..+++|+++| ..+-...+++...|+.+++|+..||..||.-+
T Consensus 14 ~p~~~e~L~~Yy---~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 14 PPPDIQPLERYW---AAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCHHHHHHH---HHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcchHHHHHH---HHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 344569999999 55567889999999999999999999999753
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=90.25 E-value=0.81 Score=31.12 Aligned_cols=52 Identities=21% Similarity=0.047 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhh
Q psy10107 6 VPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k 63 (140)
.+|+.|+.+.+..+..++ ..++..+ ..++|+.+|++...|..|..+++....
T Consensus 3 ~~r~~~t~e~K~~iv~~~---~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEV---EENPDLR---KGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp CSSCCCCHHHHHHHHHHH---HHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred CcceeCCHHHHHHHHHHH---HHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 478899999987777776 3456554 236899999999999999988876543
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=88.16 E-value=0.79 Score=29.61 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.|+..++.+|.-.|.+ .| .-.++|..+|++...|.++...+|.++++..
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3677778887665422 22 2468999999999999999999999998765
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=87.24 E-value=0.69 Score=27.64 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHH
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 60 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~ 60 (140)
+|..|+.+.+..+...+. ..+.......++|..+|++..+|.+|....+.
T Consensus 2 ~r~~ys~efK~~~~~~~~----~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~ 51 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYR----NDNDCKGNQRATARKYNIHRRQIQKWLQCESN 51 (59)
T ss_dssp CCCCCCHHHHHHHHHHHH----HCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHH
T ss_pred CCCcCCHHHHHHHHHHHH----cCCCcchHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 466788888766655441 12221123579999999999999999765443
No 83
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=86.97 E-value=1 Score=30.79 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+++.++.++. .+ ...| .-.++|..+|++...|.++...+|+++|+...
T Consensus 109 ~L~~~~r~v~~-~~----~~g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YL----IRGY----SYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HH----TTTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HH----HcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777 33 1233 34689999999999999999999999987653
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=85.92 E-value=0.9 Score=27.23 Aligned_cols=49 Identities=14% Similarity=-0.046 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+++..+.+|...|.+ .+ .-.++|..+|++...|.++...++.+.++..
T Consensus 15 ~L~~~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4778888888776521 22 2468999999999999999999999988764
No 85
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=85.23 E-value=2.2 Score=27.82 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.|++..+++|.-.+ .... -.++|..+|++...|.++..+.+++++..+.
T Consensus 27 ~Lt~~e~~vl~l~~---~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 27 GLTDQERTLLGLLS---EGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp CCCHHHHHHHHHHH---TTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHHHHH---cCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 57888888887754 2222 2789999999999999999999999887653
No 86
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=83.56 E-value=1.5 Score=26.53 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+++..+++|...|.-.-...+ .-.++|..+|++...|.++...++++.+...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4788888888776510001222 3367999999999999999999999988764
No 87
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=83.15 E-value=3.6 Score=27.37 Aligned_cols=50 Identities=12% Similarity=-0.003 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
+...|++..+++|.-++ +-. . -.++|..+|++...|.++..+.+.++.-.
T Consensus 31 ~~~~Lt~re~~Vl~l~~-~G~--s------~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLFA-EGF--L------VTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSSCCHHHHHHHHHHH-HTC--C------HHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred ccCCCCHHHHHHHHHHH-cCC--C------HHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 45679999999996644 222 2 27899999999999999999988886543
No 88
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=82.92 E-value=2.7 Score=26.96 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.|++..+++|.-++ ....| .++|..+|++...|.++....+++++..+
T Consensus 29 ~Lt~~e~~vl~l~~---~g~s~------~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 29 MLTEREMEILLLIA---KGYSN------QEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GCCSHHHHHHHHHH---TTCCT------THHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred cCCHHHHHHHHHHH---cCCCH------HHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 47888888887643 22222 47999999999999999999999877553
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=82.54 E-value=2.2 Score=23.11 Aligned_cols=41 Identities=5% Similarity=-0.049 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhh
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N 57 (140)
..++.+.+..+...+ .. .+ ...++|+.+|++...|..|+..
T Consensus 4 ~~l~~~~~~~i~~~~---~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMK---LL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHH---HT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHH---Hc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 456777664444443 21 22 2568999999999999999754
No 90
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=81.57 E-value=1.9 Score=27.57 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+++.++.+|...|.-.-...+ .-.++|..+|++...|.++...++.+++...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788888888777620000222 3468999999999999999999999988765
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=81.31 E-value=2.8 Score=26.55 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
..|++..+++|.-++ . .+ .-.++|..+|++...|.++..+.+.+.+...
T Consensus 20 ~~Lt~~e~~vl~l~~---~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 20 NQLTPRERDILKLIA---Q--GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GGSCHHHHHHHHHHT---T--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH---c--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 358888889887743 1 22 3468999999999999999999998877543
No 92
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=80.88 E-value=2.2 Score=26.18 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 11 GTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
|++..+++|.-++ . .+ .-.++|..+|++...|..++...+.+.+..+
T Consensus 17 L~~~e~~vl~l~~---~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAVV---A--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHHT---T--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHH---c--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 5677777776542 2 22 2358999999999999999999999887543
No 93
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=80.26 E-value=2.4 Score=28.87 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+|+.++.++...|.+. + .-.++|..+|++...|..++..+|.+.++..
T Consensus 22 ~L~~~~r~vl~l~y~~g----~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD----Y----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47888888887764222 2 2378999999999999999999999988764
No 94
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=80.16 E-value=3.6 Score=26.51 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKN-PYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~n-PYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
+|..|+.+.+......+ ... .+ ...++|..+|++...|.+|....
T Consensus 2 ~r~~ys~e~k~~~v~~~---~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 2 PTKTYSEEFKRDAVALY---ENSDGA----SLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCCHHHHHHHHHHH---TTGGGS----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH---HHcCCC----hHHHHHHHHCcCHHHHHHHHHHH
Confidence 46778888876555554 222 22 36789999999999999997543
No 95
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=80.11 E-value=2.8 Score=25.64 Aligned_cols=53 Identities=17% Similarity=-0.001 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhh-hcc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK-KEN 66 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k-~~~ 66 (140)
.+++..+.+|...|.-.-..++ .-.++|..+|++...|..+...++.+.+ ...
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~ 63 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHES 63 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence 4788899999877620000222 2358999999999999999999999998 543
No 96
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=79.92 E-value=1.8 Score=30.70 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 11 GTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
+++.++.+|.-.| ...++ -.++|..+|++...|.++...+|.++|+..+
T Consensus 141 L~~~~r~vl~l~~----~~g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 141 LPEDLRMAITLRE----LDGLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp SCHHHHHHHHHHH----TTCCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHhHHHH----HcCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443 12222 3578999999999999999999999998754
No 97
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=79.47 E-value=1.5 Score=31.92 Aligned_cols=50 Identities=20% Similarity=0.113 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+++.++.+|...|. ..+ .-.++|..+|++...|..++..+|.++|+...
T Consensus 187 ~L~~~~r~vl~l~~~----~g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY----EEL----PAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp TSCHHHHHHHHHHHT----SCC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh----cCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 366777777766551 122 24678999999999999999999999987654
No 98
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=77.67 E-value=9.6 Score=24.20 Aligned_cols=46 Identities=15% Similarity=0.085 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHH
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 60 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~ 60 (140)
++..|+.+.+......+.. .+ ...++|+.+|++...|.+|....+.
T Consensus 19 ~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 3467888886555455421 12 2568999999999999999865543
No 99
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=77.43 E-value=1.4 Score=31.05 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 11 GTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
+++.++.+|.-.|.+. .+| .++|..+|++...|.+++..+|+++|+.
T Consensus 136 L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4555556655433222 222 3578999999999999999999998865
No 100
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=76.27 E-value=6.2 Score=23.58 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 8 EYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 8 R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
-..+++...++|..++ ..+ .-.++|..+|++...|..++...+.+.+..
T Consensus 9 ~~~L~~~e~~il~~~~-----~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 9 KPLLTKREREVFELLV-----QDK----TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCCHHHHHHHHHHT-----TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHH-----cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 3568899999987743 222 346899999999999999999988887654
No 101
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=76.16 E-value=2.8 Score=28.42 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+++.++.++.-.|.+ .+ .-.++|..+|++...|.+++..+|.+.+...
T Consensus 25 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4677888888766421 22 2368999999999999999999999998765
No 102
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=73.29 E-value=4.2 Score=28.53 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=39.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH----Hh--CCChhhHhHhhhhHHH
Q psy10107 3 MNMVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAI----IT--KMTLTQVSTWFANARR 60 (140)
Q Consensus 3 ~~~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~----~t--gLt~~QV~nWF~N~R~ 60 (140)
|...+|..+|-+++..+..++ |..||-.+. .+||. +. +++...|..|..|+-.
T Consensus 4 m~~~~R~~lT~~qK~~i~~~~--~~~~~~~~q---~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 4 MGKIKRRAITEHEKRALRHYF--FQLQNRSGQ---QDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCCCSSSCCCSHHHHHHHHHH--HSSSSCCCH---HHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCCCcCccCCHHHHHHHHHHH--HHhCCCCCH---HHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 446689999999999888886 235665554 34555 77 7899999999987554
No 103
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=71.24 E-value=11 Score=24.20 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 15 YKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 15 ~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
.++.+..|+.+|...+-++ ..+||..+|++..++...|+-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4566778888888775555 4568888999999988887654
No 104
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=70.53 E-value=4.6 Score=23.41 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 38 IMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 38 ~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.++|..+|++...|.++..+.+.+.+..+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 58999999999999999999998877543
No 105
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=69.45 E-value=6.9 Score=27.25 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.+++.++.+|.-.+ ...+ .-.++|..+|+++..|.+.+..+|.++++...
T Consensus 93 ~Lp~~~r~vl~L~~----~~g~----s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTA----MEGF----SPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTS----SSCC----CHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHH----HcCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35666777664432 1222 23689999999999999999999999998764
No 106
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=68.32 E-value=13 Score=24.08 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHhCCChhhHhHhhhhHH
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTK-GEKIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~-~~k~~La~~tgLt~~QV~nWF~N~R 59 (140)
++..|+.+.+......+.++.. -|++. ....++|..+|++..+|.+|..-.+
T Consensus 3 ~~~~ys~e~K~~~v~~~~~~~~-~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 3 KNTRFSPEVRQRAVRMVLESQG-EYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccc-ccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567888887655454432210 13343 4567899999999999999976544
No 107
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=67.91 E-value=9.1 Score=28.99 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
..||+.++++|.-.+ .... -.++|..+|+++..|.+...+.|++++..+
T Consensus 196 ~~L~~~erevl~L~~---~G~s------~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR---KGLS------SKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH---TTCC------HHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH---cCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 468889999987754 2222 368999999999999999999999987654
No 108
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=67.25 E-value=3.2 Score=22.84 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChhhHhHhhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N 57 (140)
..+||+.+|++...|..|+..
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 568999999999999999864
No 109
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=65.83 E-value=3.4 Score=25.42 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||+.+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998754
No 110
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=65.30 E-value=13 Score=24.72 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhcc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~ 66 (140)
.+++.++.++.-.|...-..+ -.-.++|..+|++...|.+....+++++|...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~----~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTD----YTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 477888888877662111122 23478999999999999999999999998765
No 111
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=64.10 E-value=3.2 Score=23.99 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..+.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999998764
No 112
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=63.89 E-value=3.4 Score=24.05 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 5689999999999999998764
No 113
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=62.22 E-value=3.5 Score=24.26 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999987643
No 114
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=60.82 E-value=31 Score=22.26 Aligned_cols=51 Identities=8% Similarity=-0.128 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHhC--CChhhHhHhhh
Q psy10107 6 VPEYVGTEIYKATLKAWLNEH--KKNPYPTKGEKIMLAIITK--MTLTQVSTWFA 56 (140)
Q Consensus 6 ~~R~~~~~~~~~~L~~w~~~h--~~nPYPs~~~k~~La~~tg--Lt~~QV~nWF~ 56 (140)
.....++.++.+.|+..|... -.+.|.+..+-..+.+..| ++..+|..+|.
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345678899999999999765 5689999999999988887 46677777764
No 115
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=60.62 E-value=4.2 Score=24.30 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..+.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~ 47 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNK 47 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999998764
No 116
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=60.23 E-value=13 Score=24.00 Aligned_cols=48 Identities=10% Similarity=-0.017 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 8 EYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 8 R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
-..|++..+++|.-.+ ..| .-.++|..+|++...|.+...+.+++..-
T Consensus 27 ~~~Lt~rE~~Vl~l~~-----~G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-----KGF----TNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp --CCCHHHHHHHHHHH-----TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHH-----cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3568999999996654 222 34789999999999999999988888653
No 117
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=59.60 E-value=4.4 Score=24.15 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSE 42 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999998764
No 118
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=58.43 E-value=4.7 Score=24.15 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|..+.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCC
Confidence 4679999999999999998764
No 119
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=58.33 E-value=4.7 Score=23.54 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|..+.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~ 38 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGK 38 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999997664
No 120
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=57.63 E-value=6.6 Score=24.15 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHH
Q psy10107 14 IYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 14 ~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R 59 (140)
.....|+....+ ..+ + ..+||..+|++...|..|..+.+
T Consensus 12 ~~~~~l~~~r~~---~gl-s---q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 12 QLANAMKLVRQQ---NGW-T---QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHHHHH---TTC-C---HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHH---cCC-C---HHHHHHHhCCCHHHHHHHHcCCC
Confidence 344556665522 222 2 46799999999999999998743
No 121
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=57.12 E-value=5.2 Score=23.98 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999998764
No 122
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=56.98 E-value=13 Score=27.64 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 8 EYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 8 R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
...||+..+++|. |+. ..+ .-.++|..+|+++..|++...+.++|..-.
T Consensus 173 ~~~Lt~~e~~vl~-~~~----~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 173 KQMLSPREMLCLV-WAS----KGK----TASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp GGSCCHHHHHHHH-HHH----TTC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHH-HHH----cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 4568888888884 442 122 236789999999999999999999987644
No 123
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=56.20 E-value=34 Score=21.27 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=42.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 4 NMVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 4 ~~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
+..+|-.++.+--+.....+.+-- -.--++....++....|||..||..=+|..|.+.++.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 356888888876554444432222 2223556666777778999999999999999988753
No 124
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=56.04 E-value=5.9 Score=24.63 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||+.+|++...|..|..+.+
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998765
No 125
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=55.77 E-value=2.4 Score=30.76 Aligned_cols=45 Identities=11% Similarity=-0.035 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhh
Q psy10107 11 GTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k 63 (140)
+++.++.+|.-.|. ..-.-.++|..+|++...|..++..+|.++|
T Consensus 199 L~~~~r~vl~l~~~--------~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 199 LDERERLIVYLRYY--------KDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -----------------------------------------------------
T ss_pred CCHHHHHHHHHHHh--------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 45555555554331 1234468999999999999999998888764
No 126
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=55.59 E-value=5.5 Score=23.88 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987754
No 127
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=55.30 E-value=5.7 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4679999999999999998764
No 128
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=54.57 E-value=7.9 Score=21.99 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=18.3
Q ss_pred HHHHHHHhCCChhhHhHhhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N 57 (140)
..++|+.+|++...|..|+..
T Consensus 34 ~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHh
Confidence 568999999999999999753
No 129
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=52.09 E-value=6.6 Score=24.90 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..+.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~ 46 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGI 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHhCC
Confidence 4679999999999999998764
No 130
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=51.88 E-value=17 Score=26.86 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
+...|++..+++|. |+ . ..+ .-.++|..+|+++..|++...+.++|..-.
T Consensus 170 ~~~~Lt~~e~~vl~-~~---~-~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 170 DAAWLDPKEATYLR-WI---A-VGK----TMEEIADVEGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp CCCCCCHHHHHHHH-HH---T-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHH-HH---H-cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 34568888888873 44 2 222 236789999999999999999999987543
No 131
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=51.72 E-value=21 Score=22.02 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCChhhHhHhhhh
Q psy10107 10 VGTEIYKATLKAWLNEH--KKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h--~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N 57 (140)
.++.+....|+..|... ..+.+.+.++-..+....|++..+|..+|..
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 45677788888888655 4568999999999999999999888887753
No 132
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=51.37 E-value=7.5 Score=24.51 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGK 45 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 5789999999999999998764
No 133
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=50.90 E-value=7.5 Score=23.60 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|..+.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFE 47 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4679999999999999998764
No 134
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=49.99 E-value=13 Score=23.35 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhHhHhhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N 57 (140)
..+||+.+|++..-|..|+.+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 688999999999999999864
No 135
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=49.92 E-value=7 Score=23.69 Aligned_cols=22 Identities=9% Similarity=-0.071 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..+.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 4679999999999999998764
No 136
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=48.47 E-value=10 Score=22.58 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=17.5
Q ss_pred HHHHHHHhCCChhhHhHhh
Q psy10107 37 KIMLAIITKMTLTQVSTWF 55 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF 55 (140)
..+||+.+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999997
No 137
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=47.49 E-value=24 Score=22.66 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 15 YKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 15 ~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
.+..+.+|+.+|...+ ++ ..+||..+|++..++..-|+..
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 3556678888888777 44 4578888999999988887654
No 138
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=47.16 E-value=9.1 Score=23.33 Aligned_cols=22 Identities=18% Similarity=-0.124 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|..+.
T Consensus 30 q~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 3679999999999999997764
No 139
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=46.90 E-value=9.1 Score=23.82 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|..+.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999998764
No 140
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=46.61 E-value=36 Score=22.45 Aligned_cols=46 Identities=11% Similarity=-0.035 Sum_probs=30.8
Q ss_pred CCCCCCCCCHHHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhh
Q psy10107 4 NMVPEYVGTEIYKA-TLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 4 ~~~~R~~~~~~~~~-~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N 57 (140)
++..+..++.+.+. ++.+.+ ... ....++|+..+|+..+|..|-.-
T Consensus 26 ~~~~~rrWs~~~Kl~VV~~~~----~g~----~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 26 PPLDTRRWVASRKAAVVKAVI----HGL----ITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp CCSSCCCCCHHHHHHHHHHHH----TTS----SCHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHhhhccCHHHHHHHHHHHH----cCC----CCHHHHHHHhCCCHHHHHHHHHH
Confidence 34455667777644 455444 222 34568999999999999999543
No 141
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=46.39 E-value=7.3 Score=24.06 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Q psy10107 2 FMNMVPEYVGTEIYKATLKAWLNEHKKNP 30 (140)
Q Consensus 2 ~~~~~~R~~~~~~~~~~L~~w~~~h~~nP 30 (140)
|+++.||-.-+...++.|+.+..+--.||
T Consensus 42 flenvprgtktahirealrryieeigenp 70 (70)
T 2q2k_A 42 FLENVPRGTKTAHIREALRRYIEEIGENP 70 (70)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHCC---
T ss_pred HHHcCCCccchHHHHHHHHHHHHHhccCC
Confidence 68899999988899999999986655444
No 142
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=46.16 E-value=41 Score=23.36 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 11 GTEIYKATLKAWLN-EHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 11 ~~~~~~~~L~~w~~-~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
++....-+|-..+. .-..+++|+.+ +||..+|++..+|...+.+--.+
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 44444444433332 22457999986 69999999999999998887666
No 143
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=45.99 E-value=41 Score=22.20 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCHHHHH----HHHHHhCCChhhH-hHhhhhHHHhh
Q psy10107 8 EYVGTEIYKATLKAWLNEHKKNPY-PTKGEKI----MLAIITKMTLTQV-STWFANARRRL 62 (140)
Q Consensus 8 R~~~~~~~~~~L~~w~~~h~~nPY-Ps~~~k~----~La~~tgLt~~QV-~nWF~N~R~R~ 62 (140)
|.....+.-+.|..|+.+...... +|...-. .|+...|++.-.+ ..|+.+..+|.
T Consensus 70 r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 70 KLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 455778889999999977653322 6665443 5566677754333 55999888773
No 144
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=45.84 E-value=11 Score=23.60 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=18.0
Q ss_pred HHHHHHHhCCChhhHhHhhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N 57 (140)
..+||+.+|++..-|.+|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456999999999999999664
No 145
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=44.06 E-value=10 Score=24.47 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5689999999999999998874
No 146
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=43.68 E-value=10 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|..+.+
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999988754
No 147
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=43.47 E-value=51 Score=21.27 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 14 IYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 14 ~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+..+..|+.+|...+ ++ ..+||..+|++..++...|.-.
T Consensus 7 ~~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEP-LS---TDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHHTCSSSC-CC---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCC-CC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 34556678888887777 45 4678888999999888877654
No 148
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=43.26 E-value=36 Score=24.44 Aligned_cols=45 Identities=9% Similarity=0.019 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHhCCC-hhhHhHhhhh
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPY-PTKGEKIMLAIITKMT-LTQVSTWFAN 57 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPY-Ps~~~k~~La~~tgLt-~~QV~nWF~N 57 (140)
.+|..+..++...-.--....| || ..+||+.+|++ ...|.+|+..
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps---~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPT---RAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCC---HHHHHHHTTCSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCcc---HHHHHHHhCCCChHHHHHHHHH
Confidence 3677766655332111133345 35 45799999999 8999999863
No 149
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=42.96 E-value=12 Score=23.42 Aligned_cols=43 Identities=9% Similarity=-0.078 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHH
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R 59 (140)
.+.......|+.+. ....+ + ..+||..+|++...|..|..+.+
T Consensus 9 ~~~~~~~~~l~~~r---~~~gl-s---q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 9 RVTLEVGKVIQQGR---QSKGL-T---QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp CCCCHHHHHHHHHH---HTTTC-C---HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHH---HHcCC-C---HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34445566666665 22222 3 46799999999999999987653
No 150
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=42.71 E-value=40 Score=21.54 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhC-------CChhhHhHhhhh
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITK-------MTLTQVSTWFAN 57 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tg-------Lt~~QV~nWF~N 57 (140)
..++.+....+.+++ ..+|.-+..+........| ++...|..|+..
T Consensus 74 ~~l~~~~~~~i~~~~---~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYK---RSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTT---TTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHH---HhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 346666667777776 5667666554433322226 477888888653
No 151
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=42.58 E-value=18 Score=22.10 Aligned_cols=21 Identities=19% Similarity=-0.028 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChhhHhHhhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N 57 (140)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999876
No 152
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=42.42 E-value=40 Score=25.66 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
..|++..+++|.-.. + .+ .-.++|..+|+++..|+.-..|.++|..-.
T Consensus 196 ~~Lt~re~~vl~~~~-~----G~----s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 196 MPLSQREYDIFHWMS-R----GK----TNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCCHHHHHHHHHHH-T----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 568888888884332 1 22 246789999999999999999999997644
No 153
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=42.03 E-value=12 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|-.+.
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 4679999999999999997764
No 154
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=41.92 E-value=13 Score=21.77 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=18.9
Q ss_pred HHHHHHHhC--CChhhHhHhhhhH
Q psy10107 37 KIMLAIITK--MTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tg--Lt~~QV~nWF~N~ 58 (140)
..+||..+| ++...|..|..+.
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCC
Confidence 467999999 9999999998764
No 155
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=41.86 E-value=28 Score=22.89 Aligned_cols=41 Identities=7% Similarity=0.038 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhh
Q psy10107 13 EIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 13 ~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N 57 (140)
...+..+..|+.+|...+. .-.+||..+|++..++...|..
T Consensus 6 ~~~~~~~~~~i~~~~~~~~----~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 6 PNMRTRVCTVINNNIAHEW----TLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CCHHHHHHHHHHTSTTSCC----CHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 4456677788877766652 3567899999999999888753
No 156
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=41.26 E-value=55 Score=19.59 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|..+.+
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 35688888888888888876654
No 157
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=41.02 E-value=11 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHH
Q psy10107 15 YKATLKAWLNEHKKNPYPTKGEK 37 (140)
Q Consensus 15 ~~~~L~~w~~~h~~nPYPs~~~k 37 (140)
++.+++-.| ..||||+++..
T Consensus 17 ~vRiIkiLy---QSNP~P~p~GT 36 (72)
T 3lph_A 17 AVRLIKFLY---QSNPPPNPEGT 36 (72)
T ss_dssp HHHHHHHHH---HTCCCCCCCSC
T ss_pred HHHHHHHHH---ccCCCCCCCCc
Confidence 345555555 78999997543
No 158
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=41.00 E-value=38 Score=21.72 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 15 YKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 15 ~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
....+.+|+.+|...+ + .-.+||..+|++..++...|...
T Consensus 6 ~i~~~~~~i~~~~~~~-~---~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSEG-M---SLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTSC-C---CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-C---CHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455678888887665 2 45678888899999888887654
No 159
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=40.38 E-value=18 Score=21.80 Aligned_cols=22 Identities=9% Similarity=-0.076 Sum_probs=18.1
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|-.+.
T Consensus 27 q~elA~~~gvs~~tis~~E~G~ 48 (73)
T 3fmy_A 27 QKEASEIFGGGVNAFSRYEKGN 48 (73)
T ss_dssp HHHHHHHHCSCTTHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCC
Confidence 4678999999999999996654
No 160
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=40.16 E-value=51 Score=20.63 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCChhhHhHhhh
Q psy10107 11 GTEIYKATLKAWLNEH--KKNPYPTKGEKIMLAIITKMTLTQVSTWFA 56 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h--~~nPYPs~~~k~~La~~tgLt~~QV~nWF~ 56 (140)
++.+..+.++..|... -.+.|.+.++-..+.+..|++..+|..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5677788888888655 457899999999988889999888887764
No 161
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=39.26 E-value=77 Score=20.70 Aligned_cols=43 Identities=5% Similarity=-0.051 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 8 EYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 8 R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
...++.+.+..+...+ .. .+ ...++|+.+|++...|..|+...
T Consensus 4 ~~~~s~~~r~~i~~~~---~~-G~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 4 GSALSDTERAQLDVMK---LL-NV----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp SCCCCHHHHHHHHHHH---HT-TC----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred cccCCHHHHHHHHHHH---Hc-CC----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 3567777776665554 22 22 24688999999999999998754
No 162
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=38.89 E-value=77 Score=21.35 Aligned_cols=52 Identities=12% Similarity=-0.042 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHHHHHHHh-hcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 7 PEYVGTEIYKATLKAWLNE-HKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~-h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
.+..++.....+|-..+.. ...++||+.. +||..+|++...|..-+..--.+
T Consensus 26 ~~lgLt~~e~~vll~L~~~~~~~~~~ps~~---~LA~~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 26 KQLGLGEGELVLLLHMQSFFEEGVLFPTPA---ELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTTTCSSCCHH---HHHHTSSSCHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455666666555333321 2346888864 59999999999999876554443
No 163
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=38.69 E-value=27 Score=22.41 Aligned_cols=45 Identities=4% Similarity=-0.047 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
..++.+.+..+...+ . ..+ + ..++|+.+|++...|..|+...+..
T Consensus 16 ~~~s~~~r~~i~~~~---~-~g~-s---~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA---A-DGI-R---PCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp SCCCHHHHHHHHHHH---H-TTC-C---HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH---H-cCC-C---HHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 357777766665555 2 222 2 4678999999999999999876543
No 164
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=38.26 E-value=76 Score=21.53 Aligned_cols=51 Identities=4% Similarity=-0.101 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCCh--hhHhHhh
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEH--KKNPYPTKGEKIMLAIITKMTL--TQVSTWF 55 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h--~~nPYPs~~~k~~La~~tgLt~--~QV~nWF 55 (140)
.++|..||+++.+-|+..|... -.+.+.+..+-..+.+.+|..+ ..+...+
T Consensus 4 ~~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 4 APRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 3567889999999999999655 4578999999999888888644 4444433
No 165
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=37.77 E-value=15 Score=22.51 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|..+.+
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45899999999999999987654
No 166
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=37.29 E-value=16 Score=21.25 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=17.7
Q ss_pred HHHHHHHhCCChhhHhHhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFA 56 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~ 56 (140)
..++|+.+|++...|..|..
T Consensus 16 ~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45799999999999999983
No 167
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=37.19 E-value=21 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 35 GEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 35 ~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
.+|+.|....||+++|+.++|.-+|+.
T Consensus 11 ~~kqk~~~~yg~~e~q~~~~~~~a~~~ 37 (159)
T 1c05_A 11 QEKQKLRHMYGVNERQFRKTFEEAGKM 37 (159)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 588899999999999999999887655
No 168
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=37.07 E-value=49 Score=27.29 Aligned_cols=51 Identities=16% Similarity=-0.014 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
.++...+.+|...|. +... ..-.-.+||..+|++...|..+...+++++|+
T Consensus 360 ~L~~rer~Vl~lr~~--L~~~--e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~ 410 (423)
T 2a6h_F 360 KLSEREAMVLKLRKG--LIDG--REHTLEEVGAFFGVTRERIRQIENKALRKLKY 410 (423)
T ss_dssp SSCHHHHHHHHHHHH--TTCC-------CHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhc--cCCC--CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 366677777765552 1110 12456789999999999999999999999993
No 169
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=37.03 E-value=56 Score=20.26 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCChhhHhHhhh
Q psy10107 11 GTEIYKATLKAWLNEH--KKNPYPTKGEKIMLAIITKMTLTQVSTWFA 56 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h--~~nPYPs~~~k~~La~~tgLt~~QV~nWF~ 56 (140)
++.+....++..|... -.+.|.+.++-..+.+..|++..+|...|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5777888888888544 347889999999888889999888877664
No 170
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=36.38 E-value=16 Score=23.36 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|..+.
T Consensus 34 q~~lA~~~gis~~~is~~e~g~ 55 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQ 55 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999998764
No 171
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=35.91 E-value=6.9 Score=22.89 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
-++.++.+.|+.+...|. -.+.+...+.|.++||...-|..+|.-.-.|
T Consensus 3 qwseeverklkefvrrhq---eitqetlheyaqklglnqqaieqffrefeqr 51 (52)
T 1y66_A 3 QWSEEVERKLKEFVRRHQ---EITQETLHEYAQKLGLNQQAIEQFFREFEQR 51 (52)
T ss_dssp CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCccHHHHHHHHHHHHhc
Confidence 356777888999885554 4577888899999999999999998765444
No 172
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=35.70 E-value=84 Score=19.92 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 16 KATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 16 ~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
+..+.+|+.+|..++-++ -.+||..+|++..++..-|...
T Consensus 5 i~~~~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFD---IASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCC---HHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 445568887887633244 4568889999999888777653
No 173
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=35.47 E-value=18 Score=23.52 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|-.+.+
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999988753
No 174
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=35.21 E-value=19 Score=21.95 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||+.+|++...|+.++.+.+
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 36799999999999999998765
No 175
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=34.88 E-value=32 Score=23.32 Aligned_cols=45 Identities=4% Similarity=-0.040 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
..++.+.+..+...+ . ..+ ...++|+.+|++...|..|+...+..
T Consensus 31 ~~~s~e~r~~iv~~~---~-~G~----s~~~iA~~lgis~~TV~rw~~~~~~~ 75 (149)
T 1k78_A 31 RPLPDVVRQRIVELA---H-QGV----RPCDISRQLRVSHGCVSKILGRYYET 75 (149)
T ss_dssp SCCCHHHHHHHHHHH---H-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---H-cCC----CHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 457777766655554 2 222 24678999999999999999876543
No 176
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=34.40 E-value=27 Score=22.18 Aligned_cols=21 Identities=19% Similarity=-0.028 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhHhHhhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N 57 (140)
..+||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999987
No 177
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=34.31 E-value=18 Score=23.43 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|..+.+
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999987643
No 178
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.19 E-value=75 Score=21.71 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHH-HHHH------hCCChhhHhHhhhhHHH
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIM-LAII------TKMTLTQVSTWFANARR 60 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~-La~~------tgLt~~QV~nWF~N~R~ 60 (140)
..++.+....+.+++ ..+|.-+..+... |... ..++...|..|+...+.
T Consensus 82 ~~~~~~~~~~I~~~~---~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 82 KVATPKVVEKIGDYK---RQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCTTHHHHHHHHH---HHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHH---HHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 456777777787887 4456566554433 3222 14789999999865433
No 179
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=34.19 E-value=21 Score=30.86 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhccc
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~~~ 67 (140)
.||+.++.+|.-.|.-.....| .-.++|..+|++...|.++...+++++|+...
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~----s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~~ 603 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDH----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 603 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCC----STTGGGTTTSSCSSHHHHHHHHHHTTTTSCSS
T ss_pred cCCHHHHHHHHHHhccCCCCCc----CHHHHHHHhCCCHHHHHHHHHHHHHHhhCcch
Confidence 5788889998887731111122 23689999999999999999999999987653
No 180
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=33.70 E-value=38 Score=25.15 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 8 EYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 8 R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
...||+..+++|. |+.+ .+ .-.++|..+|+++..|.+-..+.++|..-
T Consensus 173 ~~~Lt~re~~vl~-~~~~----G~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 173 NVRLTARETEMLK-WTAV----GK----TYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp GCCCCHHHHHHHH-HHHT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 3556777777773 3311 11 23678999999999999999999888653
No 181
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=33.32 E-value=69 Score=21.23 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 11 GTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
.....+..+.+|+.+|...+ ++ ..+||..+|++..++..-|+..
T Consensus 8 ~~~~~i~~~~~~i~~~~~~~-~s---l~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 8 TDAITIHSILDWIEDNLESP-LS---LEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp -CHHHHHHHHHHHHTTTTSC-CC---CHHHHHHSSSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHccCCC-CC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 34566777888998887776 34 4578888899988888777653
No 182
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=33.27 E-value=59 Score=27.22 Aligned_cols=51 Identities=16% Similarity=-0.046 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
.++...+.+|...|.-.-..+ -.-.+||..+|++...|......+++++|+
T Consensus 375 ~L~ereR~VI~LRygL~~~e~----~TleEIAe~LgIS~erVRqi~~RAlkKLR~ 425 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGRE----HTLEEVGAYFGVTRERIRQIENKALRKLKY 425 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 356667777765552111122 356789999999999999999999999983
No 183
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=32.66 E-value=19 Score=23.90 Aligned_cols=23 Identities=0% Similarity=0.039 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|..+.+
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46899999999999999988763
No 184
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=32.61 E-value=21 Score=22.15 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|-.+.+
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 35799999999999999976643
No 185
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=32.39 E-value=21 Score=22.71 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=17.8
Q ss_pred HHHHHHHhCCChhhHhHhhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N 57 (140)
..+||..+|++...|..|-.+
T Consensus 46 q~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHhCcCHHHHHHHHcC
Confidence 357999999999999999654
No 186
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=31.88 E-value=45 Score=21.09 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 16 KATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 16 ~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
-+.|.+|..+|-..+ |.. ...+..|..++|+..|+
T Consensus 13 fe~L~~f~~~hGh~~-P~~-------------~~~LG~WV~~QR~~~k~ 47 (74)
T 2kta_A 13 YEELKSFVRKYRRFP-KST-------------EGNLGGWCHTQRKMRKQ 47 (74)
T ss_dssp HHHHHHHHHHHSSCS-SCC-------------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CCC-------------CChhhhhHHHHHHHHHc
Confidence 456889999998888 864 23589999999988764
No 187
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=31.80 E-value=22 Score=23.48 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|-.+.
T Consensus 39 q~elA~~~gis~~~is~~E~G~ 60 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDS 60 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4579999999999999998765
No 188
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=31.69 E-value=20 Score=23.47 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHhCCChhhHhHhhhhHH
Q psy10107 10 VGTEIYKATLKAWLNEHK--KNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~--~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R 59 (140)
.+.......|+.+. . ... -| ..+||..+|++...|..|..+.+
T Consensus 30 ~~~~~~g~~lk~~R---~~~~~g-ls---q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 30 TVGKEVGKAIEQGR---QKFEPT-MT---QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp CCCHHHHHHHHHHH---TTSSSC-CC---HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHH---HHHHcC-CC---HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34445566666664 2 222 23 46799999999999999977643
No 189
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=31.51 E-value=22 Score=23.01 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|-.+.
T Consensus 44 q~elA~~~gis~~~is~iE~G~ 65 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNS 65 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4679999999999999997764
No 190
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=31.41 E-value=19 Score=23.54 Aligned_cols=22 Identities=23% Similarity=-0.028 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|-.+.
T Consensus 37 q~elA~~~gis~~~is~~E~G~ 58 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKR 58 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999997654
No 191
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=31.37 E-value=34 Score=25.14 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHhCCChhhHhH
Q psy10107 29 NPYPTKGEKIMLAIITKMTLTQVST 53 (140)
Q Consensus 29 nPYPs~~~k~~La~~tgLt~~QV~n 53 (140)
..|.+.+....+|..++|+..+|..
T Consensus 38 ~G~l~~~~~~~iA~~l~l~~~~V~~ 62 (181)
T 3i9v_2 38 EGWIRPERIEEIARLVGTTPTEVMG 62 (181)
T ss_dssp HSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred hCCCCHHHHHHHHHHhCcCHHHHHH
Confidence 3799999999999999999999843
No 192
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=31.19 E-value=96 Score=21.56 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
.+|+...++|.-.. ++. ...+||...+++...|.+-..+.|+|..-
T Consensus 154 ~Lt~rE~~vl~~l~-~g~--------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 154 QLTPRERDILKLIA-QGL--------PNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GSCHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH-cCC--------CHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 47888888886543 221 26789999999999999999999988753
No 193
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=30.65 E-value=85 Score=18.43 Aligned_cols=48 Identities=13% Similarity=-0.088 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHhC-CChhhHhHhhh
Q psy10107 9 YVGTEIYKATLKAWLNEH--KKNPYPTKGEKIMLAIITK-MTLTQVSTWFA 56 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h--~~nPYPs~~~k~~La~~tg-Lt~~QV~nWF~ 56 (140)
..++++....|+.+|... -.+.|.+..+-..+....| ++..+|...|.
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356788888899998654 4467888888888877776 66667776664
No 194
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=30.53 E-value=31 Score=22.54 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChhhHhHhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFA 56 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~ 56 (140)
-..+|+..|+++.||+.|=.
T Consensus 27 Q~~vAe~~GvdeStISR~k~ 46 (83)
T 1zs4_A 27 TEKTAEAVGVDKSQISRWKR 46 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred hHHHHHHhCCCHHHHhhhhh
Confidence 45789999999999999843
No 195
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=30.01 E-value=77 Score=20.65 Aligned_cols=44 Identities=9% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 13 EIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 13 ~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
.+.=-+|..|+.+|... -+.+++..+..-+.+.-..+-+||.++
T Consensus 21 lElDllL~~F~~~~~~~--ls~~el~~f~~LL~~~D~DL~~w~~g~ 64 (91)
T 1x6i_A 21 RELDISIMPFFEHEYDS--LSDDEKRIFIRLLECDDPDLFNWLMNH 64 (91)
T ss_dssp HHHHHHHHHHHHHHGGG--SCHHHHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHcCCCHHHHHHHHCC
Confidence 34445677787777665 489999999999999999999999864
No 196
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=29.97 E-value=55 Score=23.55 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHhh-cCCCC-CCHHHHHHHHHHhCCChhhHhHhhh
Q psy10107 10 VGTEIYKATLKAWLNEH-KKNPY-PTKGEKIMLAIITKMTLTQVSTWFA 56 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h-~~nPY-Ps~~~k~~La~~tgLt~~QV~nWF~ 56 (140)
.+|+.|.++|.- +.++ ..+.| || ..+||+.+||+...|..++.
T Consensus 2 ~lt~~q~~il~~-I~~~~~~~g~~~s---~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 2 DLTERQRKVLLF-IEEFIEKNGYPPS---VREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCCHHHHHHHHH-HHHHHHHHSSCCC---HHHHHHHHTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHH-HHHHHHHhCCCCC---HHHHHHHcCCCcHHHHHHHH
Confidence 478888888843 3333 33444 34 56899999999876666544
No 197
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=29.48 E-value=24 Score=22.96 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|-.+.+
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999987654
No 198
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=29.16 E-value=39 Score=20.17 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.1
Q ss_pred HHHHHHHhCCChhhHhHhhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N 57 (140)
..++|..+|++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467999999999999999654
No 199
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=28.84 E-value=1.3e+02 Score=20.00 Aligned_cols=45 Identities=11% Similarity=-0.055 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhh
Q psy10107 10 VGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62 (140)
Q Consensus 10 ~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~ 62 (140)
.|......+...+|.+. ....++|..+|++...|+.-.+.+|...
T Consensus 18 ~~~~~~~~~A~lyYv~g--------~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~ 62 (101)
T 2w7n_A 18 EVGQQTIEIARGVLVDG--------KPQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp CCCHHHHHHHHHHHTTC--------CCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC--------CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 57777777777776322 3378999999999999999999999885
No 200
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=28.74 E-value=26 Score=23.07 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||+.+|++...|..|..++|
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987764
No 201
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=28.51 E-value=81 Score=21.29 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhh
Q psy10107 14 IYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 14 ~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N 57 (140)
+.+..|+++|.+|...| .-+.|++.+|.+.+.+..=|..
T Consensus 48 ~vI~flR~yY~e~~~~P-----~iR~l~K~~~~~~k~Ly~LFP~ 86 (105)
T 3or1_C 48 KIIDFLQDYYKANGIAP-----MVRILSKNTGFALKEIYELFPS 86 (105)
T ss_dssp HHHHHHHHHHHHHSSCC-----CHHHHHHHHCCCHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCC-----cHHHHHHHHCcCHHHHHHHCCC
Confidence 34677899998888877 2568889999987777666653
No 202
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=28.06 E-value=99 Score=21.95 Aligned_cols=48 Identities=15% Similarity=0.009 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhhc
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~~ 65 (140)
..+|+...++|.-.. ++ + ...+||...+++...|.+-..+.|+|..-.
T Consensus 148 ~~LT~rE~~vL~~l~-~g----~----s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-EG----L----TNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TTSCHHHHHHHHHHH-TT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHH-CC----C----CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 457888888885443 22 2 346799999999999999999999886543
No 203
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=27.68 E-value=30 Score=21.83 Aligned_cols=22 Identities=5% Similarity=0.155 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhh----HhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQ----VSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~Q----V~nWF~N~ 58 (140)
..+||..+|++... |..|-.+.
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~ 42 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGK 42 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCC
Confidence 46899999999999 99998775
No 204
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=27.22 E-value=33 Score=22.87 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCChhhHhHhhh
Q psy10107 35 GEKIMLAIITKMTLTQVSTWFA 56 (140)
Q Consensus 35 ~~k~~La~~tgLt~~QV~nWF~ 56 (140)
-....+|+..|++.++|+.|=.
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHh
Confidence 3456789999999999999844
No 205
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=27.03 E-value=28 Score=23.92 Aligned_cols=44 Identities=9% Similarity=-0.037 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 16 KATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 16 ~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
.++|..-..-.....| . ..-..||+..|++..-|-..|.|+-.=
T Consensus 18 ~~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 18 DKILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 4556555444477788 6 788999999999999999999886543
No 206
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=26.89 E-value=22 Score=24.89 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHH
Q psy10107 1 MFMNMVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 60 (140)
Q Consensus 1 ~~~~~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~ 60 (140)
|.+++.+|.. ..-.+||..-......+.| ....-.+||+..|++..-|-.-|.|+-.
T Consensus 2 ~~~~~~~r~~--~~r~~Il~aA~~lf~~~G~-~~ts~~~IA~~aGvsk~tlY~~F~sKe~ 58 (211)
T 3bhq_A 2 MKIDGETRSA--RKDREIIQAATAAFISKGY-DGTSMEEIATKAGASKQTVYKHFTDKET 58 (211)
T ss_dssp -----CCHHH--HHHHHHHHHHHHHHHHHCS-TTCCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred CCcccCCccH--hHHHHHHHHHHHHHHHhCc-ccCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4455444432 2224566655555577777 4466788999999999999999988643
No 207
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=26.63 E-value=1.3e+02 Score=19.35 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCChhhHhHhhh
Q psy10107 7 PEYVGTEIYKATLKAWLNEH--KKNPYPTKGEKIMLAIITKMTLTQVSTWFA 56 (140)
Q Consensus 7 ~R~~~~~~~~~~L~~w~~~h--~~nPYPs~~~k~~La~~tgLt~~QV~nWF~ 56 (140)
.-..++.+..+.|+..|... -.+.|.+.++-..+....+++..+|..+|.
T Consensus 4 ~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp CCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567888899999998655 346788988888887777888888877653
No 208
>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1
Probab=26.22 E-value=68 Score=20.52 Aligned_cols=44 Identities=5% Similarity=0.012 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhH
Q psy10107 13 EIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 13 ~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~ 58 (140)
.+.=-+|..|+.+|... -+.+++..+..-..+.-..+-+||.++
T Consensus 21 lElDllL~~F~~~~~~~--ls~~el~~f~~LL~~~D~DL~~w~~g~ 64 (82)
T 1puz_A 21 LELDLIFGRFMEKEFEH--LSDKELSEFSEILEFQDQELLALINGH 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 34445677777777655 489999999999999999999999874
No 209
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=26.18 E-value=25 Score=24.44 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHH
Q psy10107 16 KATLKAWLNEHKKNPYPTKGE 36 (140)
Q Consensus 16 ~~~L~~w~~~h~~nPYPs~~~ 36 (140)
+++++-.| ..||||+++-
T Consensus 15 vRiIkiLy---QSNPyP~peG 32 (115)
T 2x7l_M 15 VRLIKFLY---QSNPPPNPEG 32 (115)
T ss_dssp HHHHHHHH---HSSCCCCCCC
T ss_pred HHHHHHHH---ccCCCCCCCC
Confidence 44555445 7899999753
No 210
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=26.10 E-value=29 Score=24.47 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCChhhHhHhhhhHH
Q psy10107 36 EKIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 36 ~k~~La~~tgLt~~QV~nWF~N~R 59 (140)
...+||+.+|++...|.+|....+
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~ 45 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGA 45 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSS
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCC
Confidence 567899999999999999987544
No 211
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=26.02 E-value=74 Score=21.58 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHhCCChhhHhHhhhhHHH
Q psy10107 31 YPTKGEKIMLAIITKMTLTQVSTWFANARR 60 (140)
Q Consensus 31 YPs~~~k~~La~~tgLt~~QV~nWF~N~R~ 60 (140)
..++++...|+..++++..+|..||.-.-.
T Consensus 7 ~l~~~~l~~l~~~~~~~~~~i~~~f~~fd~ 36 (193)
T 1bjf_A 7 KLRPEVMQDLLESTDFTEHEIQEWYKGFLR 36 (193)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467788888999999999999999886643
No 212
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=25.65 E-value=37 Score=20.71 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+..|++...|+.++.+.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 5789999999999999998765
No 213
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=25.64 E-value=45 Score=22.99 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHH
Q psy10107 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 60 (140)
Q Consensus 17 ~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~ 60 (140)
++|.....-...+.| . ..-..||+..|++..-|-..|.|+-.
T Consensus 17 ~Il~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 17 RVLEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 456555555577788 5 78899999999999999999988654
No 214
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=25.29 E-value=1.1e+02 Score=17.84 Aligned_cols=49 Identities=14% Similarity=-0.067 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHhC--CChhhHhHhhh
Q psy10107 8 EYVGTEIYKATLKAWLNEH--KKNPYPTKGEKIMLAIITK--MTLTQVSTWFA 56 (140)
Q Consensus 8 R~~~~~~~~~~L~~w~~~h--~~nPYPs~~~k~~La~~tg--Lt~~QV~nWF~ 56 (140)
...++.+....|+.+|... -.+.|.+..+-..+....| ++..+|...|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3568899999999999765 3457888888888888777 45666766654
No 215
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=24.73 E-value=34 Score=23.70 Aligned_cols=22 Identities=14% Similarity=0.006 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||..+|++...|..|..+.
T Consensus 84 q~elA~~lGis~s~is~~E~G~ 105 (141)
T 3kxa_A 84 QSELATAAGLPQPYLSRIENSK 105 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3578999999999999998765
No 216
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=24.47 E-value=1e+02 Score=17.44 Aligned_cols=46 Identities=11% Similarity=-0.039 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCC--ChhhHhHhhh
Q psy10107 11 GTEIYKATLKAWLNEH--KKNPYPTKGEKIMLAIITKM--TLTQVSTWFA 56 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h--~~nPYPs~~~k~~La~~tgL--t~~QV~nWF~ 56 (140)
++.+....|+.+|... ..+.+.+..+-..+....|. +..+|...|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4677788888888655 34678888888888887775 4445555553
No 217
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=24.33 E-value=30 Score=25.29 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhHhHhhhhH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~ 58 (140)
..+||+.+|++...|..|..+.
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~ 54 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGI 54 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999999774
No 218
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=24.23 E-value=65 Score=24.14 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCChhhHhHhhhhHHHhhh
Q psy10107 35 GEKIMLAIITKMTLTQVSTWFANARRRLK 63 (140)
Q Consensus 35 ~~k~~La~~tgLt~~QV~nWF~N~R~R~k 63 (140)
.+|+.|-...|+.+.|+.++|..++++.-
T Consensus 59 ~ekqkl~~~Yg~~e~q~~~y~~~a~~~~g 87 (209)
T 2vqe_D 59 REKQKLRRIYGISERQFRNLFEEASKKKG 87 (209)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHccC
Confidence 68889999999999999999999887644
No 219
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=23.60 E-value=36 Score=20.82 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCChhhHhHhh
Q psy10107 36 EKIMLAIITKMTLTQVSTWF 55 (140)
Q Consensus 36 ~k~~La~~tgLt~~QV~nWF 55 (140)
.-..+|+.+|++..-|+.|.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 34679999999999999997
No 220
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=23.43 E-value=79 Score=21.03 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=43.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh-------CCChhhHhHhhhhHHHhhhhc
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIIT-------KMTLTQVSTWFANARRRLKKE 65 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~t-------gLt~~QV~nWF~N~R~R~k~~ 65 (140)
..|+-.|.+-....|+.+-..|.. +.|....|.+||... ++.+.+|-.=|.-+=++.++.
T Consensus 18 ~~p~vdf~kL~~~tLrrY~r~y~L-~~~~~~sK~qLa~aV~kHF~s~~VdE~evI~~Fly~VK~~~~k 84 (94)
T 2ld7_A 18 DTPEVDLYQLQVNTLRRYKRHFKL-PTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVRNDKNK 84 (94)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHTTC-CCCSSCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCcCHHHCCHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCcc
Confidence 457788999999999999877655 556666777777654 588888777777666655544
No 221
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.96 E-value=37 Score=22.64 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=13.4
Q ss_pred HHHHHhCCChhhHhHhhhhH
Q psy10107 39 MLAIITKMTLTQVSTWFANA 58 (140)
Q Consensus 39 ~La~~tgLt~~QV~nWF~N~ 58 (140)
+||..+|++...|..|-.+.
T Consensus 89 ~la~~~g~s~~~i~~~E~g~ 108 (133)
T 3o9x_A 89 EASEIFGGGVNAFSRYEKGN 108 (133)
T ss_dssp HHHHHHCSCTTHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHCCC
Confidence 45666777777777776543
No 222
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=22.77 E-value=37 Score=22.89 Aligned_cols=23 Identities=13% Similarity=-0.047 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||..+|++...|..|..+.+
T Consensus 56 Q~eLA~~lGis~~~Is~iE~G~~ 78 (120)
T 2o38_A 56 QAAAAARLGINQPKVSALRNYKL 78 (120)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999987654
No 223
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=22.65 E-value=64 Score=22.39 Aligned_cols=45 Identities=13% Similarity=-0.048 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 16 KATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 16 ~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
.+||..-......+.|- ...-.+||+..|++..-|-..|.|+..=
T Consensus 14 ~~Il~aA~~lf~~~G~~-~~s~~~IA~~aGvskgtlY~~F~sKe~L 58 (210)
T 2wui_A 14 DGILDAAERVFLEKGVG-TTAMADLADAAGVSRGAVYGHYKNKIEV 58 (210)
T ss_dssp HHHHHHHHHHHHHSCTT-TCCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHcCcc-ccCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 45676665555777874 3667789999999999999999987643
No 224
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=22.61 E-value=55 Score=21.46 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChhhHhHhhhh
Q psy10107 37 KIMLAIITKMTLTQVSTWFAN 57 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N 57 (140)
..+||..+|++...|..|=.+
T Consensus 52 Q~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 52 QSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp HHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHCC
Confidence 467899999999999999544
No 225
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=22.26 E-value=42 Score=20.74 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=15.8
Q ss_pred HHHHHHhCCChhhHhHh
Q psy10107 38 IMLAIITKMTLTQVSTW 54 (140)
Q Consensus 38 ~~La~~tgLt~~QV~nW 54 (140)
.++|+.+|++...|..|
T Consensus 9 ~e~A~~~gvs~~tlR~y 25 (81)
T 2jml_A 9 RTIARMTGIREATLRAW 25 (81)
T ss_dssp HHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHH
Confidence 57899999999999999
No 226
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=22.12 E-value=78 Score=23.85 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 35 GEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 35 ~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
.||+.|-...|++++|..+.|.-+++.
T Consensus 55 ~eKQklr~~YG~~EkQf~~~~~~A~~~ 81 (205)
T 3r8n_D 55 REKQKVRRIYGVLERQFRNYYKEAARL 81 (205)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 688889999999999999999988775
No 227
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=22.12 E-value=37 Score=24.00 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||+.+|++...|..|..+.+
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (192)
T 1y9q_A 27 LDATAQLTGVSKAMLGQIERGES 49 (192)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999987754
No 228
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=21.87 E-value=44 Score=24.06 Aligned_cols=29 Identities=10% Similarity=-0.130 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHhCCChhhHhHhhhhHHH
Q psy10107 32 PTKGEKIMLAIITKMTLTQVSTWFANARR 60 (140)
Q Consensus 32 Ps~~~k~~La~~tgLt~~QV~nWF~N~R~ 60 (140)
.++++..+|.+.|+++..+|..||.-...
T Consensus 31 l~~e~l~~l~~~t~~s~~ei~~l~~~F~~ 59 (214)
T 2l4h_A 31 LSKELLAEYQDLTFLTKQEILLAHRRFCE 59 (214)
T ss_dssp CCHHHHHHHHSCCSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999999776555
No 229
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=21.76 E-value=32 Score=23.51 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 16 KATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 16 ~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
.++|...+.-...++| ..-.-..||+..|++..-|-..|.++-.=
T Consensus 15 ~~Il~aa~~l~~~~G~-~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (202)
T 3lwj_A 15 QKILTCSLDLFIEKGY-YNTSIRDIIALSEVGTGTFYNYFVDKEDI 59 (202)
T ss_dssp HHHHHHHHHHHHHHCT-TTCCHHHHHHHHCSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHcCc-ccCCHHHHHHHhCCCchhHHHHcCCHHHH
Confidence 3455555444466677 44567789999999999999999887543
No 230
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=21.06 E-value=59 Score=21.72 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHH
Q psy10107 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 60 (140)
Q Consensus 17 ~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~ 60 (140)
++|.+.+.-...++|- .-.-..||+..|++..-|-..|.++-.
T Consensus 13 ~Il~aa~~l~~~~G~~-~~tv~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 13 AILETALQLFVSQGFH-GTSTATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp HHHHHHHHHHHHTCST-TSCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 4555444444777873 466788999999999999999998754
No 231
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=21.01 E-value=44 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHhHhhhhHH
Q psy10107 37 KIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 37 k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+||+.+|++...|..|-.+.+
T Consensus 26 ~~~la~~~gis~~~ls~~e~g~~ 48 (198)
T 2bnm_A 26 HAALASLLGETPETVAAWENGEG 48 (198)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998866
No 232
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=20.99 E-value=1.6e+02 Score=20.24 Aligned_cols=45 Identities=13% Similarity=-0.034 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCChhhHhHhhhhHHHhhhh
Q psy10107 11 GTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (140)
Q Consensus 11 ~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R~R~k~ 64 (140)
+++...++|.-.. ++ + ...++|..++++...|.+-..+.|+|...
T Consensus 143 Lt~rE~~vl~~l~-~g----~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 143 LTGREQQVLQLTI-RG----L----MNKQIAGELGIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp SCHHHHHHHHHHT-TT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHH-cC----C----cHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 5666666664432 22 2 23578999999999999998888888653
No 233
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.81 E-value=1.9e+02 Score=19.17 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCHHHHHH-HHHHh----C--CChhhHhHhhhhH
Q psy10107 9 YVGTEIYKATLKAWLNEHKKNPYPTKGEKIM-LAIIT----K--MTLTQVSTWFANA 58 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~-La~~t----g--Lt~~QV~nWF~N~ 58 (140)
..++.+....+.+++ ..+|.-+..+... |.... | ++...|..|+...
T Consensus 89 ~~~~~~~~~~I~~~~---~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 89 KVATPKVVEKIAEYK---RQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp SSSCHHHHHHHHHHH---HHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHH---HhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 457788888888888 4455556544322 22221 5 7888999987643
No 234
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=20.70 E-value=2.9e+02 Score=21.31 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=36.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-hCCChhhHhHhhhhHHHhhh
Q psy10107 5 MVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAII-TKMTLTQVSTWFANARRRLK 63 (140)
Q Consensus 5 ~~~R~~~~~~~~~~L~~w~~~h~~nPYPs~~~k~~La~~-tgLt~~QV~nWF~N~R~R~k 63 (140)
..-...+|.+-..++...|..|-++ =..||+. -+-|..||.+.|.+.|+|..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGKD-------W~~IAk~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGRD-------FQAISDVIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSSC-------HHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCcC-------HHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence 3345678888888887777666544 2233333 45799999999999888844
No 235
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=20.42 E-value=40 Score=23.16 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHhCCChhhHhHhhhhHH
Q psy10107 31 YPTKGEKIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 31 YPs~~~k~~La~~tgLt~~QV~nWF~N~R 59 (140)
-.++++-.+|.+.|..+.++|+.|+..-.
T Consensus 7 ~lspe~l~~L~~~t~fs~~elk~~y~~F~ 35 (118)
T 1tuz_A 7 LISPSDFAQLQKYMEYSTKKVSDVLKLFE 35 (118)
T ss_dssp CSCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcccCHHHHHHHHHHHc
Confidence 45899999999999999999999977764
No 236
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=20.28 E-value=1.1e+02 Score=21.04 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHhCCChhhHhHhhhhHH
Q psy10107 29 NPYPTKGEKIMLAIITKMTLTQVSTWFANAR 59 (140)
Q Consensus 29 nPYPs~~~k~~La~~tgLt~~QV~nWF~N~R 59 (140)
..+.+.++-..+.+.++++..+|..+|...-
T Consensus 13 ~g~l~~~el~~~~~~~~~~~~~i~~~f~~~d 43 (207)
T 2d8n_A 13 SGALSKEILEELQLNTKFSEEELCSWYQSFL 43 (207)
T ss_dssp TTCCCHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4467888888888888888888888887544
No 237
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=20.21 E-value=75 Score=21.91 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCChhhHhHhhhhHHHh
Q psy10107 36 EKIMLAIITKMTLTQVSTWFANARRR 61 (140)
Q Consensus 36 ~k~~La~~tgLt~~QV~nWF~N~R~R 61 (140)
-..+||++.|||..+|..=....|++
T Consensus 94 n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 94 NVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46799999999999998866555544
No 238
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=20.03 E-value=1.8e+02 Score=18.65 Aligned_cols=48 Identities=15% Similarity=-0.070 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHhhcC---CCCCCHHHHHHHHHHhC--CChhhHhHhhh
Q psy10107 9 YVGTEIYKATLKAWLNEHKK---NPYPTKGEKIMLAIITK--MTLTQVSTWFA 56 (140)
Q Consensus 9 ~~~~~~~~~~L~~w~~~h~~---nPYPs~~~k~~La~~tg--Lt~~QV~nWF~ 56 (140)
..++++....|+..|...-. +.+.+.++-..+....| ++..+|..+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45788889999999876643 56899999888888877 46666776664
Done!