RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10107
(140 letters)
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 91.3 bits (227), Expect = 1e-25
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNK 75
L + H NPYP++ K LA +T++QVS WF N R R KK E N
Sbjct: 14 EILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANI 72
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 89.8 bits (223), Expect = 8e-25
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKT 76
L+ W+ +H+ YP++ EK ML+ T ++L Q+S WF NARRR+ + M + +N
Sbjct: 20 KILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD--MLQQRRNDP 77
Query: 77 DDDDDA 82
Sbjct: 78 SGPSSG 83
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 89.9 bits (223), Expect = 8e-25
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTDD 78
L + H NPYP++ K LA +T++QVS WF N R R KK E N
Sbjct: 16 LNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAA 75
Query: 79 DDDA 82
Sbjct: 76 KTAV 79
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 89.1 bits (221), Expect = 2e-24
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 18 TLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE--NKMTWEPKNK 75
L+ WL EH+ N YP++ EK +L+ T ++ QV WF NARRRL + K +P
Sbjct: 19 ILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQF 78
Query: 76 TDDDDDAIISD 86
T A IS+
Sbjct: 79 TISRRGAKISE 89
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 64
Score = 88.1 bits (219), Expect = 2e-24
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 18 TLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
L + H NPYP++ K LA +T++QVS WF N R R KK
Sbjct: 17 ILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 73
Score = 88.2 bits (219), Expect = 2e-24
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 16 KATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
+++WL +H +PYPT+ EK +A T +TL QV+ WF NARRR+ +
Sbjct: 19 TNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 87.2 bits (216), Expect = 7e-24
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTDD 78
L++W ++ +NPY L T ++ Q+ W A R + K + +
Sbjct: 17 LESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPELADLLSGE 76
Query: 79 D 79
Sbjct: 77 P 77
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 84.7 bits (210), Expect = 5e-23
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
++AWL +H +PYP++ +K LA T +T+ QV+ WF NARRR+ +
Sbjct: 13 MRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 84.3 bits (209), Expect = 5e-23
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
L++W ++ +NPY L T ++ Q+ W +N RR+ K
Sbjct: 13 LESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 83.8 bits (207), Expect = 2e-22
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
L++W ++ +NPY L T ++ Q+ W +N RR+ K
Sbjct: 42 LESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 51.4 bits (123), Expect = 5e-10
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKN 74
L++ +NP P E L TKMT ++ +WF+ R+++ E P +
Sbjct: 20 RALESSF---AQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKSGPSS 74
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 51.5 bits (123), Expect = 6e-10
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKT 76
L+ K+ +PT+ E L + TK++ ++ +WF+ R+ + +
Sbjct: 26 KILEDSFL---KSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLDSMGSG 82
Query: 77 DDDDDA 82
+
Sbjct: 83 KSGPSS 88
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 50.2 bits (120), Expect = 1e-09
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
A LKA ++ +P E L +T + +++ WF++ R R ++
Sbjct: 17 AHLKA---SFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 50.4 bits (120), Expect = 2e-09
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKT 76
L+A + T E L TK+T ++ WF ++ + + ++
Sbjct: 24 RVLQASFL---NSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNA 80
Query: 77 DDDDDA 82
Sbjct: 81 GSSSGP 86
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 50.1 bits (120), Expect = 2e-09
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+ LK +N +P + E L +T ++ +V WF++ R +
Sbjct: 21 SALKG---SFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 44.2 bits (104), Expect = 2e-06
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
K P P+ E LA ++ V WF N R++ K+
Sbjct: 120 KCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 44.1 bits (103), Expect = 2e-06
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 7 PEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
P V T++ + TL A E+ P+K +I ++ + L+ VS +F NARRR
Sbjct: 100 PRLVFTDVQRRTLHAIFKEN---KRPSKELQITISQQLGLELSTVSNFFMNARRRSLD 154
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 41.3 bits (97), Expect = 4e-06
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
L++++++ YP + L+ + + +F N R +K
Sbjct: 20 GILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 43.0 bits (101), Expect = 4e-06
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
+N PT + ++A M + WF+N R++ K+ N
Sbjct: 122 ENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing
factor, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 76
Score = 40.8 bits (95), Expect = 7e-06
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW 70
+ + + + + L IT + ++ WF + R LK ++ W
Sbjct: 20 SFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH-GQLKW 65
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 40.9 bits (95), Expect = 9e-06
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 26 HKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKT 76
+ +P+ E LA + + T + +WF + R K + W ++
Sbjct: 44 FVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN-GNLKWYYYYQS 93
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription
factor, structural genomics, loop insertion, NPPSFA;
NMR {Homo sapiens} SCOP: a.4.1.1
Length = 95
Score = 40.8 bits (95), Expect = 1e-05
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 15/63 (23%)
Query: 27 KKNPYPTKGEKIMLAI---------------ITKMTLTQVSTWFANARRRLKKENKMTWE 71
+N YP + ++ +A + ++T +V WFAN R+ +K+ +
Sbjct: 27 NENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIAAI 86
Query: 72 PKN 74
++
Sbjct: 87 LES 89
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 40.7 bits (95), Expect = 2e-05
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
T I A A ++ P+ E + +A + V WF N R+R K+
Sbjct: 92 TTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 40.8 bits (95), Expect = 3e-05
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+KNP PT E +A V WF+N R+ LK
Sbjct: 113 EKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 39.5 bits (92), Expect = 3e-05
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNK 75
K Y E+ LA KMT QV TWF N R + +++ E + +
Sbjct: 34 KRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQ 85
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 38.9 bits (91), Expect = 3e-05
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
+ + Y + E+ LA + +++ QV TWF N R + ++
Sbjct: 24 KKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 37.9 bits (89), Expect = 6e-05
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
++ EK +A +T QV WF N R R K
Sbjct: 25 RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 37.8 bits (88), Expect = 8e-05
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
+K Y E+ LA +T TQV WF N R ++KK
Sbjct: 24 RRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 37.7 bits (88), Expect = 8e-05
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
K+ Y + E+ LA + +T TQV WF N R ++K++ K
Sbjct: 22 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 39.3 bits (91), Expect = 9e-05
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
K+P P+ + +A + V WF+N R++ K+ +
Sbjct: 116 LKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRSS 155
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 36.9 bits (86), Expect = 1e-04
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
+ Y E+ LA +MT QV TWF N R + +++
Sbjct: 17 LRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 37.5 bits (87), Expect = 1e-04
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
+K Y + ++I LA ++ QV TW+ N R + KK
Sbjct: 34 KRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 69
Score = 36.9 bits (86), Expect = 1e-04
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
Y + E+ LA K+T TQV WF N R + K++
Sbjct: 24 SHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 36.9 bits (86), Expect = 1e-04
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
L+ + + N P++ + +A + + + WF N + ++
Sbjct: 20 RVLRQYFD---INNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 36.7 bits (85), Expect = 2e-04
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
++ Y + E+ LA + ++T TQV WF N R + K+
Sbjct: 29 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double
helix, helix-turn-helix; NMR {Drosophila melanogaster}
SCOP: a.4.1.1
Length = 68
Score = 36.6 bits (85), Expect = 2e-04
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 25 EHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
+ Y T L+ + QV WF N RRR K ++
Sbjct: 20 HFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for
eukaryotic structural genomics; NMR {Homo sapiens}
Length = 84
Score = 36.7 bits (85), Expect = 2e-04
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
+ ++ Y + + L+ I ++ QV TWF N R + K+ K
Sbjct: 39 DRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 80
Score = 36.3 bits (84), Expect = 3e-04
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
+ PT+ +A + V WF N R R +K
Sbjct: 38 LDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein,
transcription regulation, NUC homeobox; 2.6A {Mus
musculus}
Length = 62
Score = 35.7 bits (83), Expect = 4e-04
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
+K Y + + L+ I ++ QV TWF N R + K+
Sbjct: 23 QKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 35.5 bits (82), Expect = 5e-04
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 26 HKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTD 77
+K N +P ++A +T Q WF ++ + E ++ TD
Sbjct: 22 NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECRSVTD 73
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 34.5 bits (80), Expect = 8e-04
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
++ Y + E+ + +T TQV WF N R + K+
Sbjct: 20 RQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 34.5 bits (80), Expect = 8e-04
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
K+ Y + E+ LA + K+T TQV WF N RR K
Sbjct: 22 KQQRYLSAPERDQLASVLKLTSTQVKIWFQN--RRYK 56
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 34.6 bits (80), Expect = 0.001
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
N YP E L+ + + + WF NAR++ +K
Sbjct: 28 ANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 35.2 bits (81), Expect = 0.001
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 29 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
N Y T+ +I +A +T Q+ WF N R +LKKE +
Sbjct: 42 NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA;
NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 34.7 bits (80), Expect = 0.001
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 29 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEP 72
N Y T+ +I +A +T Q+ WF N R + KKENK EP
Sbjct: 24 NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKGEP 67
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 34.4 bits (79), Expect = 0.002
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 29 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
N + TK ++ ++ T ++ Q++ WF N R + KK
Sbjct: 29 NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA
complex, HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 34.1 bits (78), Expect = 0.002
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 29 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
N Y T+ + +A + +T QV WF N R ++KK NK
Sbjct: 35 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 34.1 bits (78), Expect = 0.003
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 29 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
N Y T+ +I +A +T Q+ WF N R + KKE+K
Sbjct: 50 NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEHK 88
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 33.3 bits (76), Expect = 0.004
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
E+ N + TK ++ ++ T ++ QV+ WF N R + KK
Sbjct: 24 REYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 33.7 bits (77), Expect = 0.005
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 25 EHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
E N Y ++ ++ +A ++ TQV WF N R + KK +
Sbjct: 52 EFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding
protein, homeodomain, LIM domain; NMR {Rattus
norvegicus} SCOP: a.4.1.1
Length = 66
Score = 32.7 bits (75), Expect = 0.006
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68
NP P K L +T ++ + WF N R + KK + M
Sbjct: 24 ANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation;
2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 32.9 bits (74), Expect = 0.008
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 21/63 (33%)
Query: 27 KKNPYPTKGEKIMLAII---------------------TKMTLTQVSTWFANARRRLKKE 65
++ P+K E+ L +T +V WFAN R+
Sbjct: 29 ERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 88
Query: 66 NKM 68
+K+
Sbjct: 89 HKL 91
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain;
protein-DNA complex, transcription/DNA complex; 2.42A
{Mesocricetus auratus}
Length = 63
Score = 32.0 bits (73), Expect = 0.008
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 25 EHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
E N Y ++ ++ LA++ +T + WF N R + KKE
Sbjct: 21 EFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 31.7 bits (72), Expect = 0.014
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
YP + L+ ++ ++ WF + R + K
Sbjct: 29 SVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 31.6 bits (72), Expect = 0.015
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 25 EHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
E K Y ++ + LA + + + WF N R + K++
Sbjct: 19 EFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 31.9 bits (71), Expect = 0.015
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 20 KAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPK 73
K W N + + +A + V TW N RR+ + P
Sbjct: 25 KYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEVSGPS 78
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 31.8 bits (71), Expect = 0.021
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 21/78 (26%)
Query: 16 KATLKAWLNEHKKNPYPTKGEKIMLAII---------------------TKMTLTQVSTW 54
A+ + + + P+K E+ L +T +V W
Sbjct: 15 PASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNW 74
Query: 55 FANARRRLKKENKMTWEP 72
FAN R+ K+ +
Sbjct: 75 FANRRKEEAFRQKLAMDA 92
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 32.2 bits (72), Expect = 0.030
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 21/58 (36%)
Query: 27 KKNPYPTKGEKIMLAII---------------------TKMTLTQVSTWFANARRRLK 63
++ P+K E+ L +T +V WFAN R+
Sbjct: 135 ERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 30.0 bits (68), Expect = 0.045
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 25 EHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
E +N Y T+ + L+ + Q+ WF N R ++KK
Sbjct: 21 EFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 30.1 bits (68), Expect = 0.068
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68
N P + LA T +T + WF NAR + ++
Sbjct: 28 INHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain
variant, DNA binding protein, developmental protein,
disease mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 28.8 bits (65), Expect = 0.14
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 69
+ N YP LA + L ++ WF N R +LK+ ++ +
Sbjct: 21 RVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRES 63
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 28.9 bits (65), Expect = 0.16
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 26 HKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTD 77
+K N +P ++A +T Q WF ++ + E ++ TD
Sbjct: 21 NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECRSVTD 72
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 27.6 bits (62), Expect = 0.33
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68
+ YP + LA+ +T ++ WF N R + +K+ K+
Sbjct: 19 SRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV 60
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 29.2 bits (64), Expect = 0.36
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 21/58 (36%)
Query: 27 KKNPYPTKGEKIMLAII---------------------TKMTLTQVSTWFANARRRLK 63
+ P+K E+ L +T +V WFAN R+
Sbjct: 162 DRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 27.7 bits (62), Expect = 0.38
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68
+N YP + +A+ T +T +V WF N R + +K +
Sbjct: 24 RNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 27.7 bits (61), Expect = 0.43
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 29 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
N P+ E +A + L V WF +
Sbjct: 25 NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 64
Score = 27.1 bits (60), Expect = 0.52
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+P + L+ + + WF RR +K
Sbjct: 21 AITKHPDEKRLEGLSKQLDWDVRSIQRWFRQ-RRNQEK 57
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 27.4 bits (61), Expect = 0.66
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKT 76
++ YP + LA + ++ WF+N R + ++E K+ + +
Sbjct: 27 ERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQSG 76
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Mus musculus}
Length = 80
Score = 27.4 bits (61), Expect = 0.66
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68
K YP + +A+ + ++V WF N R + +++ +
Sbjct: 28 KTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 26.5 bits (59), Expect = 0.99
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 27 KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
++ YP G + LA + +V WF N R + ++
Sbjct: 27 QETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with
ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3
d.122.1.2
Length = 390
Score = 27.8 bits (63), Expect = 1.2
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 17/56 (30%)
Query: 14 IYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 69
+ K WLN++ E + I ++A+RR++ K+
Sbjct: 349 VVKDAFILWLNQN-----VQAAELLAEMAI------------SSAQRRMRAAKKVV 387
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI
topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB:
3lps_A*
Length = 408
Score = 27.9 bits (63), Expect = 1.2
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 17/51 (33%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 69
+LN++ GEKI I A RLK E ++
Sbjct: 372 FSLYLNQN-----VEIGEKIAQIAI------------DRASARLKTEKQIV 405
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 26.3 bits (57), Expect = 1.5
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 29 NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
N P E + ++I + V WF + ++
Sbjct: 27 NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSR 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.5 bits (60), Expect = 2.0
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 4/97 (4%)
Query: 31 YPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTDDDDDAIISDCDEK 90
YP E+ + K+ +ST R K + E ++ E+
Sbjct: 795 YPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKK----EKGPNEEEKKKEHEEKEKER 850
Query: 91 DKDDLMMDEEKMKQHHRMVKAVLGTSSILTFPCSIVK 127
+ + + E K + I+
Sbjct: 851 ETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILP 887
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 25.4 bits (56), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
+ YP + LA T +T ++ WF N R RL+K++
Sbjct: 39 RTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.7
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 66 NKMTWEPKNKTDDDDDAIISDCDEKDKDDLMMD-------EEKMKQHHRMVKAVLGTSSI 118
+ ++ K+ +DA + + D KD D+ + + + + ++
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 119 LTFPCSIVK 127
L+ +V+
Sbjct: 72 LSKQEEMVQ 80
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 26.3 bits (58), Expect = 4.3
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 2 FMNMVPEYVGTEIYKATLKAWLNEHK 27
F+ + E G E + A + + + H
Sbjct: 392 FLMYLEEKFGRERFDAFVLEYFDSHA 417
>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural
genomics, PSI-2, prote structure initiative; HET: TRP
HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1
PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A
Length = 306
Score = 25.7 bits (55), Expect = 6.1
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 1/112 (0%)
Query: 4 NMVPEYVGTEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
N P+ + Y +A L E + P + LA Q A
Sbjct: 140 NKNPQMLQVFAYDPAGQARLREVLEAPSLYEEFLRYLARFGHAIPQQYQARDWTAAHVAD 199
Query: 64 KENKMTWEPKNKTDDDDDAIISDCDEKDKDDLMMDEEKMKQHHRMVKAVLGT 115
+ +E + D S C++ + + +H R V V+G
Sbjct: 200 DTLRPVFERIYENTDRYWREYSLCEDLVDVETQFQLWRF-RHMRTVMRVIGF 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.398
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,167,785
Number of extensions: 116104
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 84
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)