RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10107
(140 letters)
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 69.4 bits (170), Expect = 2e-17
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+ +++WL +H +PYPT+ EK +A T +TL QV+ WF NARRR+ +
Sbjct: 10 PKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 64.4 bits (157), Expect = 1e-15
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 18 TLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
L++W ++ +NPY L T ++ Q+ W +N RR+ K
Sbjct: 12 ILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 62.3 bits (151), Expect = 1e-14
Identities = 22/63 (34%), Positives = 29/63 (46%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWE 71
+ L + H NPYP++ K LA +T++QVS WF N R R KK E
Sbjct: 9 NKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68
Query: 72 PKN 74
N
Sbjct: 69 EAN 71
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 48.1 bits (114), Expect = 5e-09
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
L E N Y ++ ++ +A ++ TQV WF N R + KK +
Sbjct: 39 LTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 87
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 47.2 bits (112), Expect = 6e-09
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
L ++ YP + LA T +T ++ WF N R RL+K++
Sbjct: 14 LDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 46.7 bits (111), Expect = 1e-08
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
E N Y T+ + +A + +T QV WF N R ++KK NK
Sbjct: 25 TLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 45.6 bits (108), Expect = 2e-08
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 20 KAWLNEH-KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
+A+L + ++ EK +A +T QV WF N R R K
Sbjct: 9 RAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 45.8 bits (108), Expect = 2e-08
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
+ L++++++ YP + L+ + + +F N R +K
Sbjct: 15 SLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 45.2 bits (107), Expect = 3e-08
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68
+ NP P K L +T ++ + WF N R + KK + M
Sbjct: 20 TCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM 64
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 45.2 bits (107), Expect = 3e-08
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
E N Y T+ +I +A +T Q+ WF N R + KKEN
Sbjct: 14 KEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 44.8 bits (106), Expect = 6e-08
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68
E ++ YP + LA + ++ WF+N R + ++E K+
Sbjct: 18 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 62
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 44.3 bits (105), Expect = 6e-08
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 17 ATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
A L+ +P + L+ + + WF R + K
Sbjct: 6 AILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 44.6 bits (105), Expect = 7e-08
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
T I + K P P+ + +A + V WF N R++ K+ +
Sbjct: 13 TSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRSS 67
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 43.8 bits (103), Expect = 1e-07
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
L+ ++N YP + +A+ T +T +V WF N R + +K
Sbjct: 13 LQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 42.5 bits (100), Expect = 4e-07
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+ + Y + E+ LA + +++ QV TWF N R + ++
Sbjct: 17 KKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 42.6 bits (100), Expect = 4e-07
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
K+ Y + E+ LA + +T TQV WF N R ++K++ K
Sbjct: 19 RRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 42.4 bits (99), Expect = 6e-07
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKT 76
L + + + + + L IT + ++ WF + R LK ++ W N +
Sbjct: 15 LAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH-GQLKWFRDNAS 71
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 41.8 bits (98), Expect = 7e-07
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
T + + + Y T L+ + QV WF N RRR K ++
Sbjct: 6 TTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 41.3 bits (97), Expect = 1e-06
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 14 IYKATLKAWLNEH--KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
+ K L + YP + L+ ++ ++ WF + R + K
Sbjct: 7 VNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 40.6 bits (95), Expect = 2e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 59
K+N P+K +I ++ + L+ VS +F NAR
Sbjct: 15 AIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 40.3 bits (94), Expect = 2e-06
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
E K Y ++ + LA + + + WF N R + K++
Sbjct: 16 KEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 40.9 bits (95), Expect = 2e-06
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
T L+A + T E L TK+T ++ WF ++ + +
Sbjct: 12 TAEQLRVLQASF---LNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 40.8 bits (95), Expect = 3e-06
Identities = 5/51 (9%), Positives = 11/51 (21%), Gaps = 1/51 (1%)
Query: 16 KATLKAWLNE-HKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
K + A+ + T + + W N +
Sbjct: 29 KEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 40.4 bits (94), Expect = 3e-06
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
KA ++ Y + E+ LA + ++T TQV WF N R + K+
Sbjct: 14 VLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 39.1 bits (91), Expect = 6e-06
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
T I A +N PT + ++A M + WF+N R++ K+ N
Sbjct: 3 TSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 39.1 bits (91), Expect = 7e-06
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
E+ N + TK ++ ++ T ++ Q++ WF N R + KK
Sbjct: 18 REYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 38.5 bits (89), Expect = 2e-05
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 NEHKKNPYPTKGEKIMLA---------------IITKMTLTQVSTWFANARRRLKKENKM 68
+ +N YP + ++ +A + ++T +V WFAN R+ +K+ +
Sbjct: 17 SYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 76
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 37.6 bits (87), Expect = 2e-05
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 12 TEIYKATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
T I A A ++ P+ E + +A + V WF N R+R K+
Sbjct: 4 TTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 37.1 bits (86), Expect = 3e-05
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
E +N Y T+ + L+ + Q+ WF N R K
Sbjct: 16 REFNENRYLTERRRQQLSSELGLNEAQIKIWFQN--ARAK 53
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 36.8 bits (85), Expect = 5e-05
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 24 NEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+ ++ Y + E+ + +T TQV WF N R + K+
Sbjct: 17 RKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 37.3 bits (86), Expect = 5e-05
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 26 HKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTD 77
+K N +P ++A +T Q WF ++ + E ++ TD
Sbjct: 21 NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECRSVTD 72
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 35.5 bits (81), Expect = 2e-04
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 19 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
L N + + +T +V WFAN R+ +K
Sbjct: 30 LVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHK 78
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 25.8 bits (56), Expect = 2.4
Identities = 3/26 (11%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 58 ARRRLKKENKMTWEPK--NKTDDDDD 81
R+ ++ ++W+ + D
Sbjct: 344 ELRKEEEAKGISWQRRWFKDFDYSVT 369
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus
(Peniophora sp. SG) [TaxId: 204723]}
Length = 198
Score = 24.9 bits (54), Expect = 3.7
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 63 KKENKMTWEPKNKTDDDDDAIISDCDEKDKDDLMMDEEKMKQHHRMVKAVLGT 115
K+ENK+ + K + D E+ M M + G
Sbjct: 126 KEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGF 178
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction
resolvase) {Bacteriophage T7 [TaxId: 10760]}
Length = 129
Score = 23.6 bits (51), Expect = 7.0
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 69
K + + K L I + + F+++R +L K + +
Sbjct: 51 KGLWESDDRKKHLLIREQHPELDIRIVFSSSRTKLYKGSPTS 92
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia
coli [TaxId: 562]}
Length = 68
Score = 22.7 bits (49), Expect = 9.4
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 41 AIITKMTLTQVSTWFANARRRLKKE 65
A I + V + AR + +
Sbjct: 41 AAIMDCPVGTVRSRIFRAREAIDNK 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.398
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 530,823
Number of extensions: 22663
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 41
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)