BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10113
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 546 bits (1407), Expect = e-155, Method: Compositional matrix adjust.
Identities = 268/485 (55%), Positives = 342/485 (70%), Gaps = 13/485 (2%)
Query: 12 IHLQS--SQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGG----VRVIDAA 65
++ QS + +RLLI+ G+VVN D D+ +E+GV++ LG +L+ PGG +RV+DAA
Sbjct: 18 LYFQSMAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAA 77
Query: 66 GSYVIPGGIDPHTHFELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYE 125
G V+PGGID HTH + MG+ S+DDF+ IIDFA+P+KG SLI+ +E
Sbjct: 78 GKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFE 137
Query: 126 SWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGEL 185
+WR AD KVCCDY+LHV +TWWSDQV++EM L + GVNSFK FMAYK LYM++D EL
Sbjct: 138 TWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLEL 197
Query: 186 YDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACT 245
Y+AFS K +GAIA VHAENG++I + +K+LA GI GPEGH+L RPE VEAEA RA T
Sbjct: 198 YEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAIT 257
Query: 246 IANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQI-PCTW 304
IA+ V+CPLY+VH+MSK+A +A R++ GK +YGE +AA++GT W
Sbjct: 258 IASAVNCPLYIVHVMSKSAAKVIADARRD----GK--VVYGEPIAASLGTDGTHYWNKEW 311
Query: 305 HDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGV 364
H A HV+ PPLRPD +TP L+ LL + L TTG+DNCTFN QK LGKD FT IPNGV
Sbjct: 312 HHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGV 371
Query: 365 NGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYK 424
NGV+DR+SVIWEKGV G + +FVAVTSTNAAKIFNLYP+KG IA GSDADIV+W+ K
Sbjct: 372 NGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPK 431
Query: 425 AKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNP 484
RTISAKTH A ++NIFEG+VCHGVP I G+V + G V G G ++P
Sbjct: 432 GTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKPFA 491
Query: 485 PFVYE 489
++Y+
Sbjct: 492 EYIYK 496
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 503 bits (1295), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/480 (51%), Positives = 326/480 (67%), Gaps = 8/480 (1%)
Query: 12 IHLQS-SQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVI 70
++ QS + +RLLIK GK+VN D+ DIY+E+G+I+Q+G NLIVPGGV+ I+A VI
Sbjct: 18 LYFQSMTSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVI 77
Query: 71 PGGIDPHTHFELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQK 130
PGGID HT F++ G TS DDF+ IID +P G SL+ ++ WR+
Sbjct: 78 PGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREW 137
Query: 131 ADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFS 190
AD K CCDY+LHV I+ W +Q+EM L + HGVNSF +MA+K + L+D ++Y+ S
Sbjct: 138 ADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLS 197
Query: 191 AIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQV 250
I+++GAIA VHAENG+II + Q++L GI GPEGH LSRPEEVEAEAV RA TIANQ
Sbjct: 198 VIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQT 257
Query: 251 DCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQI-PCTWHDQAA 309
+CPLY+ +MSK++ + +A RK K +YGE + A++GT + W AA
Sbjct: 258 NCPLYITKVMSKSSAEVIAQARK------KGTVVYGEPITASLGTDGSHYWSKNWAKAAA 311
Query: 310 HVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQD 369
V SPPL PD TTP L +LL+ LQ TGS +CTFN QK +GKD+FT IP G NG ++
Sbjct: 312 FVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEE 371
Query: 370 RLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTI 429
R+SVIW+K VV G + +FVAVTSTNAAK+FNLYP+KG IA GSDAD+V+W+ + +TI
Sbjct: 372 RMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTI 431
Query: 430 SAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFVYE 489
SAKTH + +YNIFEG+ C G P VI G++ +++G L V +G G Y+P P FVY+
Sbjct: 432 SAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPFPDFVYK 491
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/474 (48%), Positives = 323/474 (68%), Gaps = 7/474 (1%)
Query: 17 SQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDP 76
+ +RLLI+ G+++N D+ D+Y+E+G+I+Q+G NLIVPGGV+ I+A G VIPGGID
Sbjct: 6 TSDRLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIPGGIDV 65
Query: 77 HTHFELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVC 136
+T+ + G TS DDF+ IID +P G SL+ ++E W + AD K C
Sbjct: 66 NTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSC 125
Query: 137 CDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLG 196
CDY+LHV IT W D V++E+ L + GVNSF+ +MAYK LY +SD +LY+AF+ +K LG
Sbjct: 126 CDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLG 185
Query: 197 AIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256
A+ +VHAENG++I + +++L GI GPEGH LSRPEE+EAEAV RA IA +++CP+Y+
Sbjct: 186 AVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRINCPVYI 245
Query: 257 VHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQI-PCTWHDQAAHVLSPP 315
+MSK+A D +A RK K ++GE +AA++GT W AA V SPP
Sbjct: 246 TKVMSKSAADIIALARK------KGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP 299
Query: 316 LRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIW 375
L PD TTP +L +LL LQ TGS +C ++ QK +GKD+FT IP GVNG+++R++V+W
Sbjct: 300 LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVW 359
Query: 376 EKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHA 435
+K V G + +FVAVTSTNAAKIFNLYP+KG IA GSDAD+V+W+ +TI+AK+H
Sbjct: 360 DKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKMKTITAKSHK 419
Query: 436 HACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFVYE 489
+YNIFEG+ CHG P VI G++ ++GN+ V++G G ++P P +Y+
Sbjct: 420 STVEYNIFEGMECHGSPLVVISQGKIVFEDGNISVSKGMGRFIPRKPFPEHLYQ 473
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 483 bits (1244), Expect = e-137, Method: Compositional matrix adjust.
Identities = 268/585 (45%), Positives = 345/585 (58%), Gaps = 30/585 (5%)
Query: 16 SSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID 75
S+ R+LIK GKVVN D + D+YIENG+IQQ+GR L++PGG +VIDA G VIPGGID
Sbjct: 27 SASVRILIKGGKVVNDDCTHEADVYIENGIIQQVGRELMIPGGAKVIDATGKLVIPGGID 86
Query: 76 PHTHFELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKV 135
THF M AT VDDFYH II LP K SL+ YE R AD KV
Sbjct: 87 TSTHFHQTFMNATCVDDFYHGTKAALVGGTTMIIGHVLPDKETSLVDAYEKCRGLADPKV 146
Query: 136 CCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL 195
CCDYALHVGITWW+ +V+ EM L + GVNSF+ FM YK LYML D ELY A K++
Sbjct: 147 CCDYALHVGITWWAPKVKAEMETLVREKGVNSFQMFMTYKDLYMLRDSELYQVLHACKDI 206
Query: 196 GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255
GAIA VHAENGE++ + ++ L GI GPEG ++SRPEE+EAEA R TIAN+ CP+Y
Sbjct: 207 GAIARVHAENGELVAEGAKEALDLGITGPEGIEISRPEELEAEATHRVITIANRTHCPIY 266
Query: 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPP 315
+V++ S +AGD +A + + GK L T A A T + W AA+V PP
Sbjct: 267 LVNVSSISAGDVIAAAKMQ----GK-VVLAETTTAHATLTGLHYYHQDWSHAAAYVTVPP 321
Query: 316 LRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIW 375
LR D T T+L++LL + L SD+ F QK +GK+ FT IP+GV+GVQDR+SVIW
Sbjct: 322 LRLDTNTSTYLMSLLANDTLNIVASDHRPFTTKQKAMGKEDFTKIPHGVSGVQDRMSVIW 381
Query: 376 EKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHA 435
E+GVV G + +FVAVTS+NAAK+ NLYP+KG I G+DAD+VVW+ +A +TISA T
Sbjct: 382 ERGVVGGKMDENRFVAVTSSNAAKLLNLYPRKGRIIPGADADVVVWDPEATKTISASTQV 441
Query: 436 HACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFVYEGQTPEV 495
D+N++E + CHGVP I GRV + G A+G G + P + P VY+
Sbjct: 442 QGGDFNLYENMRCHGVPLVTISRGRVVYENGVFMCAEGTGKFCPLRSFPDTVYKKL---- 497
Query: 496 DIDHKENHEVIEEIREKLHGLTPNNNHKIXXXXXXXXXXXXXVYGDADYGH--NQIHTGK 553
+ ++ +V R G H G + G T
Sbjct: 498 -VQREKTLKVRGVDRTPYLGDVAVVVHP----------------GKKEMGTPLADTPTRP 540
Query: 554 GMRPEGQRDLQSSSMSVCG-EIED-AGHRSSIRVRNPPGGKSSGF 596
R G RDL SS S+ G +I+D R+S R+ PPGG+SSG
Sbjct: 541 VTRHGGMRDLHESSFSLSGSQIDDHVPKRASARILAPPGGRSSGI 585
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/474 (50%), Positives = 306/474 (64%), Gaps = 5/474 (1%)
Query: 16 SSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID 75
S+ R+LIK GKVVN D + D+YIENG+IQQ+GR L++PGG +VIDA G VIPGGID
Sbjct: 6 SASVRILIKGGKVVNDDCTHEADVYIENGIIQQVGRELMIPGGAKVIDATGKLVIPGGID 65
Query: 76 PHTHFELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKV 135
THF M AT VDDFYH II LP K SL+ YE R AD KV
Sbjct: 66 TSTHFHQTFMNATCVDDFYHGTKAALVGGTTMIIGHVLPDKETSLVDAYEKCRGLADPKV 125
Query: 136 CCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL 195
CCDYALHVGITWW+ +V+ EM L + GVNSF+ FM YK LYML D ELY A K++
Sbjct: 126 CCDYALHVGITWWAPKVKAEMETLVREKGVNSFQMFMTYKDLYMLRDSELYQVLHACKDI 185
Query: 196 GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255
GAIA VHAENGE++ + ++ L GI GPEG ++SRPEE+EAEA R TIAN+ CP+Y
Sbjct: 186 GAIARVHAENGELVAEGAKEALDLGITGPEGIEISRPEELEAEATHRVITIANRTHCPIY 245
Query: 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPP 315
+V++ S +AGD +A + + GK L T A A T + W AA+V PP
Sbjct: 246 LVNVSSISAGDVIAAAKMQ----GK-VVLAETTTAHATLTGLHYYHQDWSHAAAYVTVPP 300
Query: 316 LRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIW 375
LR D T T+L++LL + L SD+ F QK +GK+ FT IP+GV+GVQDR+SVIW
Sbjct: 301 LRLDTNTSTYLMSLLANDTLNIVASDHRPFTTKQKAMGKEDFTKIPHGVSGVQDRMSVIW 360
Query: 376 EKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHA 435
E+GVV G + +FVAVTS+NAAK+ NLYP+KG I G+DAD+VVW+ +A +TISA T
Sbjct: 361 ERGVVGGKMDENRFVAVTSSNAAKLLNLYPRKGRIIPGADADVVVWDPEATKTISASTQV 420
Query: 436 HACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFVYE 489
D+N++E + CHGVP I GRV + G A+G G + P + P VY+
Sbjct: 421 QGGDFNLYENMRCHGVPLVTISRGRVVYENGVFMCAEGTGKFCPLRSFPDTVYK 474
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/473 (46%), Positives = 303/473 (64%), Gaps = 12/473 (2%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
+LIKNG VVN D+ D+ +ENG+I+++ +N+ G++V+DA ++PGGID HTHF
Sbjct: 10 ILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDTHTHF 69
Query: 81 ELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
+L MG SVDDF IIDF +P +G+SL++ Y+ W++ ADEKV CDY+
Sbjct: 70 QLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYS 129
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
LHV ITWWS+QV +EM L ++ GVNSF FMAYK +M++D E+Y F K LGAIA
Sbjct: 130 LHVAITWWSEQVSREMEILVKERGVNSFXCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQ 189
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
VHAENG+++ + +K+L GI GPEGH+LSRPE +EAEA RA IA+ V P+Y+VH+
Sbjct: 190 VHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIVHVQ 249
Query: 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPC-TWHDQAAHVLSPPLRPD 319
S A D + RKE ++ +YGE +AA +G + + W AA V+ PP+RPD
Sbjct: 250 SIGAADVICKHRKEGVR------VYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPD 303
Query: 320 ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGV 379
T L+ L L G+DNCTF +QK +GKD FT IPNGVNGV+DR+S++WE GV
Sbjct: 304 PRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGV 363
Query: 380 VPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACD 439
G L+ +FV TS+ A+IFN+YP+KG I G D DIV+W+ +TIS TH HA D
Sbjct: 364 NTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAVD 423
Query: 440 YNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPF--VYEG 490
+NIFEG+ G+ IV G + + L +G G ++P PPF V++G
Sbjct: 424 FNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVP---RPPFGPVFDG 473
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/458 (41%), Positives = 264/458 (57%), Gaps = 12/458 (2%)
Query: 22 LIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFE 81
+IK G +V AD D+ +E G I ++G NL G +DA G YV+PGGIDPHTH E
Sbjct: 4 VIKGGTIVTADLTYKADVKVEGGRIVEIGPNL---SGAETLDATGCYVMPGGIDPHTHLE 60
Query: 82 LELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYAL 141
+ MG S DDF ++DFALP G+SL++ W K+ + CDY+
Sbjct: 61 MPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKS-TRANCDYSF 119
Query: 142 HVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMV 201
H+ ITWW +QV EM + + G+N+F FMAYKG M+ D E++ +F LGA+ +V
Sbjct: 120 HMAITWWGEQVFNEMETIVKDKGINTFXHFMAYKGALMVDDDEMFSSFQRCAALGALPLV 179
Query: 202 HAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMS 261
HAENG+++ + KLLA G GPE H SRP EVE EA RA IA+ CP+Y+VH
Sbjct: 180 HAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTSC 239
Query: 262 KAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQ-IPCTWHDQAAHVLSPPLRPDE 320
+ A +A+ R + M+ ++GE L + + W A V+SPP R ++
Sbjct: 240 EQAHEAIRRARAKGMR------VFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFR-NK 292
Query: 321 TTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV 380
L L +LQ +D+C F QK G FT IPNG G++DR+ ++W GV
Sbjct: 293 LHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVA 352
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
G ++ +FVAVTSTN AKI N+YPKKG I G+DAD+VVW+ K +TISAKT A DY
Sbjct: 353 TGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAKTQQSAIDY 412
Query: 441 NIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478
N+FEG G+P + + G V ++EG ++ +G G ++
Sbjct: 413 NVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFV 450
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 327 bits (839), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 187/458 (40%), Positives = 255/458 (55%), Gaps = 9/458 (1%)
Query: 22 LIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFE 81
+IKNG +V A + + I++G I +G+NL G VIDA G YV PGGIDPHTH +
Sbjct: 4 IIKNGTIVTATDTYEAHLLIKDGKIAMIGQNL-EEKGAEVIDAKGCYVFPGGIDPHTHLD 62
Query: 82 LELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYAL 141
+ L G + DDF IIDF L KGE L K E+W KA+ K DY
Sbjct: 63 MPLGGTVTKDDFESGTIAAAFGGTTTIIDFCLTNKGEPLKKAIETWHNKANGKAVIDYGF 122
Query: 142 HVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMV 201
H+ I+ +D V +E+ ++ E+ G+ S FMAYK ++ DG LY A K LGA+ MV
Sbjct: 123 HLMISEITDDVLEELPKVLEEEGITSLXVFMAYKNVFQADDGTLYCTLLAAKELGALVMV 182
Query: 202 HAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMS 261
HAENG++ID T+K LA G P H L+RP E+E EA RAC + LYVVH+
Sbjct: 183 HAENGDVIDYLTKKALADGNTDPIYHALTRPPELEGEATGRACQLTELAGSQLYVVHVTC 242
Query: 262 KAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDET 321
A + +A R K ++GET + + + + A +V SPPLR ++
Sbjct: 243 AQAVEKIAEARN------KGLDVWGETCPQYLVLDQSYLEKPNFEGAKYVWSPPLR-EKW 295
Query: 322 TPTHLLTLLNENALQTTGSDNCTFN-KNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV 380
L L LQT GSD C+F+ K QKELG+ FT IPNG ++DR+S+++ +GV
Sbjct: 296 HQEVLWNALKNGQLQTLGSDQCSFDFKGQKELGRGDFTKIPNGGPIIEDRVSILFSEGVK 355
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
G ++ +FV + ST AK+F L+PKKG I GSDAD+V+++ +R ISA+TH A DY
Sbjct: 356 KGRITLNQFVDIVSTRIAKLFGLFPKKGTIVVGSDADLVIFDPNIERVISAETHHMAVDY 415
Query: 441 NIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478
N FEG+ G P V+ G V + G G YL
Sbjct: 416 NAFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQYL 453
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 311 bits (798), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 178/461 (38%), Positives = 247/461 (53%), Gaps = 9/461 (1%)
Query: 23 IKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFEL 82
I+ G VV A D+ IE + +G L V G IDA G YVIPGGIDPHTH ++
Sbjct: 5 IRGGTVVTAADTYQADVLIEGERVVAIGHQLSV-NGAEEIDATGCYVIPGGIDPHTHLDM 63
Query: 83 ELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYALH 142
G + DDF+ I+DF L +KGESL +W +KA K DY H
Sbjct: 64 PFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDYGFH 123
Query: 143 VGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVH 202
+ I +DQV +E+ + G+ S K FMAYK ++ D L+ K LGA+ VH
Sbjct: 124 LMIAEANDQVLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVH 183
Query: 203 AENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSK 262
AENG+++D T+K LA G P H +RP E E EA RA + LYVVH+
Sbjct: 184 AENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAGSQLYVVHVSCA 243
Query: 263 AAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETT 322
+A +A R+ K +YGET + + + + A +V SPPLR ++
Sbjct: 244 SAVQRIAEARE------KGWNVYGETCPQYLALDVSIMDQPDFEGAKYVWSPPLR-EKWN 296
Query: 323 PTHLLTLLNENALQTTGSDNCTFN-KNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVP 381
L + L LQT GSD+C FN + QKELG+ FT IPNG ++DRL++++ +GV
Sbjct: 297 QEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQ 356
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYN 441
G +S +FV ++ST AAK+F ++P+KG IA GSDADIV+++ KRT+S +TH DYN
Sbjct: 357 GRISLNQFVDISSTKAAKLFGMFPRKGTIAVGSDADIVIFDPHVKRTLSVETHHMNVDYN 416
Query: 442 IFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHT 482
FEG+ +G V+ G V + G G Y+ T
Sbjct: 417 PFEGMEVYGEVVSVLSRGSFVVRDKQFVGQAGSGQYIKRTT 457
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 296 bits (759), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/458 (36%), Positives = 241/458 (52%), Gaps = 8/458 (1%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
LLIKNG+++ AD DIY E I ++G+NL P G VIDA G YV PG IDPH H
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61
Query: 81 ELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
L M + D I+ P + + ++ Y+ W+ KA+ CDY
Sbjct: 62 YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
H+ ++ + ++ + ++ E+ G++SF F++YK + + DGE+Y K LG I
Sbjct: 122 FHMAVSKFDEKTEGQLREIV-ADGISSFXIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
H EN E++ + QKLL+ G GPE H+ SRPE VEAE R T YVVH+
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240
Query: 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDE 320
K A DA K + +Y E++ + +++SPPLR D+
Sbjct: 241 CKPALDAAM------AAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLR-DK 293
Query: 321 TTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV 380
L L + + T G+D+C F+ QK LGK++FT IPNG+ ++DR+++++ GV
Sbjct: 294 RNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVS 353
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
G L +FV ST AAK+F L+P+KG IA GSDAD+VV++ + + TIS KT DY
Sbjct: 354 RGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKTQHVNNDY 413
Query: 441 NIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478
N FEG G P V V G+V V +G +G G L
Sbjct: 414 NGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLL 451
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 296 bits (757), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 172/461 (37%), Positives = 242/461 (52%), Gaps = 9/461 (1%)
Query: 23 IKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFEL 82
I+NG VV A D+ I+ + +G +L VIDA G Y++PGGIDPHTH ++
Sbjct: 5 IRNGTVVTASDTYQADVLIDGEKVVAIGSDLQATDA-EVIDATGYYLLPGGIDPHTHLDM 63
Query: 83 ELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYALH 142
G + D+F+ I+DF L KGESL +W +KA K DY H
Sbjct: 64 PFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDYGFH 123
Query: 143 VGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVH 202
+ ++ +D V +E+ + G+ S FMAYK + M D L+ K LGA+ VH
Sbjct: 124 LMVSDANDHVLEELESVVNNEGITSLXVFMAYKNVLMADDETLFKTLIRAKELGALVQVH 183
Query: 203 AENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSK 262
AENG+++D T++ LA G P H +RP E E EA RA + D LYVVH+
Sbjct: 184 AENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHVSCA 243
Query: 263 AAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETT 322
A +A R+ K +YGET + + + A +V SPPLR ++
Sbjct: 244 DAVRRIAEARE------KGWNVYGETCPQYLVLDITALEKPDFEGAKYVWSPPLR-EKWN 296
Query: 323 PTHLLTLLNENALQTTGSDNCTFN-KNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVP 381
L + L LQT GSD+C FN QKELG+ FT IPNG ++DR+++++ +GV
Sbjct: 297 QDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRK 356
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYN 441
G +S +FV +TST AK+F ++P+KG IA GSDADIV+++ +RTIS +TH DYN
Sbjct: 357 GKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVETHHMNVDYN 416
Query: 442 IFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHT 482
FEG+ HG V+ G V G G Y+ T
Sbjct: 417 PFEGMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVKRST 457
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 261 bits (666), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 164/460 (35%), Positives = 239/460 (51%), Gaps = 14/460 (3%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
++IKNG +V AD IS D+ I++G I Q+G L R IDAAG YV PGGID HTH
Sbjct: 3 IIIKNGTIVTADGISRADLGIKDGKITQIGGAL--GPAERTIDAAGRYVFPGGIDVHTHV 60
Query: 81 ELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
E S D F I+DF +G SL + W A K DY
Sbjct: 61 ETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYG 120
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
H+ + +D V +E+ E+ G+ SF FMAY+G+ M+ D L G++ M
Sbjct: 121 YHIIVLDPTDSVIEEL-EVLPDLGITSFXVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVM 179
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
VHAENG+ D K +A G P H LSRP VEAEA RA +A V+ P+Y+VH+
Sbjct: 180 VHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHVT 239
Query: 261 -SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPD 319
++ + M K + + + CT Y + + + A +V +PP R
Sbjct: 240 CEESLEEVMRAKSRGVRALAETCTHY-------LYLTKEDLERPDFEGAKYVFTPPARAK 292
Query: 320 ETTPTHLLTLLNENALQTTGSDNCTF-NKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG 378
+ L L +T SD+C++ K K+ G++ F IPNG GV++RL ++++ G
Sbjct: 293 KDHDV-LWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQ-G 350
Query: 379 VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHAC 438
V G +S +FV + +T AK+F ++P+KG IA GSDADIV+W+ +A+ I +A
Sbjct: 351 VNEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTAMHNAM 410
Query: 439 DYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478
DY+ +EG GVP+ V++ G+V VDEG+ G +L
Sbjct: 411 DYSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFL 450
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 163/519 (31%), Positives = 249/519 (47%), Gaps = 67/519 (12%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+IKNG + A I +I + NG +Q + ++ G VIDA G+++ PGGID H H
Sbjct: 5 LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64
Query: 81 E--LELMGATSVDDFYHXXXXXXXXXXXXIIDFA---LPRKGESLIKTYESWRQKADE-- 133
+ L+L+G VD H ++ F+ + +KG S + ES + DE
Sbjct: 65 DEPLKLLGDV-VDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALA--ESVKLDVDEYS 121
Query: 134 --KVCCDYALHVGITWWSDQVQQEMAELCE--------KHGVNSFKTFMAYKGLYMLSDG 183
+ CDY LH+ I + ++ E EL + +GV+S FM Y GL +SD
Sbjct: 122 EQTLYCDYGLHL-ILFQIEKPSVEARELLDVQLQAAYNDYGVSSVXMFMTYPGL-QISDY 179
Query: 184 ELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRA 243
++ A A + G M+HAENG+++ + L G+ H +SRP VE EA RA
Sbjct: 180 DIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRA 239
Query: 244 CTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMK-KGKHCTLY-------------GETL 289
T+A +D P+ VH+ S A + + + + +K + C Y GE
Sbjct: 240 ITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVE 299
Query: 290 AAAVGTHANQI---PCTWHDQ----AAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDN 342
+ VG + I P T D + ++ SPP+RP E T + +N GSD+
Sbjct: 300 SYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRP-EGTQKSIWKGMNNGTFTIVGSDH 358
Query: 343 CTFNKNQK------------ELGKD-SFTHIPNGVNGVQDRLSVIWEKGVVPG-ILSPEK 388
C++N +K E K+ F +IPNG+ GV R+ ++++ G + G + S K
Sbjct: 359 CSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMK 418
Query: 389 FVAVTSTNAAKIFNLYPKKGVIAEG-SDADIVVW-------NYKAK-RTISAKTHAHACD 439
V + TN AK++ +YP+KG I G SDAD+V+W Y +K + I+ K H CD
Sbjct: 419 LVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCD 478
Query: 440 YNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478
Y FEG+ P Y IV G++ EG + G YL
Sbjct: 479 YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYL 517
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/468 (26%), Positives = 213/468 (45%), Gaps = 32/468 (6%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
+++KN ++V++D I++ DI +++G + + + R IDA G +V+PG +D H H
Sbjct: 4 VIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHI 63
Query: 81 ELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
+++ F II+ + + + + +++A +++ D+A
Sbjct: 64 -IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFA 122
Query: 141 LHVGITWWSDQVQQEMAELCEKH--GVNSFKTFMAYK--GLY-MLSDGELYDAFSAIKNL 195
L+ G V + E+ + H G F + MA G++ +SDGEL++ F I
Sbjct: 123 LYGG------GVPGNLPEIRKMHDAGAVGFXSMMAASVPGMFDAVSDGELFEIFQEIAAC 176
Query: 196 GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255
G++ +VHAEN II +++ AAG K ++ S+P E EA+ RA + + C L
Sbjct: 177 GSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLI 236
Query: 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHV---- 311
V+H+ + + + + E + HC Q D A +
Sbjct: 237 VLHVSNPDGVELIHQAQSE--GQDVHCE------------SGPQYLNITTDDAERIGPYM 282
Query: 312 -LSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDR 370
++PP+R E L L + T GSD+ KE G NG G++
Sbjct: 283 KVAPPVRSAEMN-IRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETS 341
Query: 371 LSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTIS 430
L ++ GV G LS E+ V V AK+F +YP+KG + GSDAD+++ + +
Sbjct: 342 LPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVD 401
Query: 431 AKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478
A Y+ F+G+ G P +V G V ++G + V QG G ++
Sbjct: 402 ASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFV 449
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 105/410 (25%), Positives = 171/410 (41%), Gaps = 45/410 (10%)
Query: 38 DIYIENGVIQQLGRNLIVPGGVR-----VIDAAGSYVIPGGIDPHTHFELELMGATSVDD 92
D+ I NG++ + PG + ID G ++ PG +D H HF G T +
Sbjct: 25 DVAIRNGIVSAITE----PGSISSDDGPAIDGTGLHLFPGMVDVHVHFNEP--GRTEWEG 78
Query: 93 FYHXXXXXXXXXXXXIIDFALPRKGESLIKT-YESWRQKADEKVCCDYALHVGITWWSDQ 151
F D L ++ + + RQ A+EK DY +W
Sbjct: 79 FASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDY------RFWGGL 132
Query: 152 VQQEMAELCEKH--GVNSFKTFMAYKGL--YMLS-DGELYDAFSAIKNLGAIAMVHAENG 206
V + L + H GV FK FM+ G + S D L I LG+I VHAE+
Sbjct: 133 VPGNIDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESN 192
Query: 207 EIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGD 266
E+++ T + + + +RP E EAV R A CP+++ H+ S+
Sbjct: 193 EMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIHICHVSSR---- 248
Query: 267 AMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHV-----LSPPLRPDET 321
+++K+ K GE + +V T + + + D+ A + +PPLR +
Sbjct: 249 -------KVLKRIKQAK--GEGVNVSVETCPHYLLFSL-DEFAEIGYLAKCAPPLRERQE 298
Query: 322 TPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVP 381
L L + SD+ + Q + GK F + G+ G Q+ L+V+ +G
Sbjct: 299 V-EDLWDGLMAGEIDLISSDHSP-SLPQMKTGKTIF-EVWGGIAGCQNTLAVMLTEGYHK 355
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISA 431
+ + V + ST AK F LYP+KG I G++A + + T++A
Sbjct: 356 RKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNA 405
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 164/414 (39%), Gaps = 44/414 (10%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+IKNG V+ ++ +DI ++ G I +G++L V DA+G V PG +D HTH
Sbjct: 25 LIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVXDASGLVVSPGXVDAHTH- 81
Query: 81 ELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIK-TYESWRQKADEKVCCDY 139
+ G + + + I+ L + ++ + + E A K+ D
Sbjct: 82 -ISEPGRSHWEGYETGTRAAAKGGITTXIEXPLNQLPATVDRASIELKFDAAKGKLTIDA 140
Query: 140 ALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG-------LYMLSDGELYDAFSAI 192
A G+ ++ E+ E+ GV F F+A G ++D + + +
Sbjct: 141 AQLGGLVSYNIDRLHELDEV----GVVGFXCFVATCGDRGIDNDFRDVNDWQFFKGAQKL 196
Query: 193 KNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDC 252
LG +VH EN I D+ ++ G + SRP E EA+ R +A C
Sbjct: 197 GELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGC 256
Query: 253 PLYVVHIMSKAAGDAMAYKRKE----LMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQA 308
L+V H+ S + + R+E + H + +GT A
Sbjct: 257 RLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIGTLAK---------- 306
Query: 309 AHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQ---KELGKDSFTHIPNGVN 365
SPP+R E L N G +C + + E + G+
Sbjct: 307 ---CSPPIRDLENQKGXWEKLFN-------GEIDCLVSDHSPCPPEXKAGNIXKAWGGIA 356
Query: 366 GVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIV 419
G+Q V +++ V S F + +TNAA IF L +KG IA G DAD V
Sbjct: 357 GLQSCXDVXFDEAVQKRGXSLPXFGKLXATNAADIFGLQ-QKGRIAPGKDADFV 409
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/443 (21%), Positives = 166/443 (37%), Gaps = 30/443 (6%)
Query: 22 LIKNGKVVNAD-KISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L KNG+ +N + KI D+ +++G I ++ N I VID G + PG +D H H
Sbjct: 4 LFKNGRYMNEEGKIVATDLLVQDGKIAKVAEN-ITADNAEVIDVNGKLIAPGLVDVHVH- 61
Query: 81 ELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
L G + I R + E + + EK +
Sbjct: 62 -LREPGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVL 120
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTF-MAYKGLYMLSDGELYDAFSAIKNLGAIA 199
+ IT V+Q +E+ + + F G+ + + A L
Sbjct: 121 PYGAIT-----VRQAGSEMTDFETLKELGAFAFTDDGVGVQDASMMLAAMKRAAKLNMAV 175
Query: 200 MVHAENGEIIDKNTQKLLAAGIKGPEGHQLSR-PEEVEAEAVTRACTIANQVDCPLYVVH 258
+ H E +I+K + G K E H L+ P E+ + R +A DC +V H
Sbjct: 176 VAHCEENTLINKGC---VHEG-KFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVCH 231
Query: 259 IMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRP 318
+ +K + + ++ +K T + L + IP ++PPLR
Sbjct: 232 VSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCE------DDIPSA---DPNFKMNPPLRG 282
Query: 319 DETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG 378
E + LL+ + +D+ +K G P G+ G + +++
Sbjct: 283 KEDHEALIEGLLD-GTIDMIATDHAPHTAEEKAQG---IERAPFGITGFETAFPLLYTNL 338
Query: 379 VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHAC 438
V GI++ E+ + + A F L + G + EG ADI + + + + I T
Sbjct: 339 VKKGIITLEQLIQFLTEKPADTFGL--EAGRLKEGRTADITIIDLEQEEEIDPTTFLSKG 396
Query: 439 DYNIFEGLVCHGVPEYVIVGGRV 461
F G C G P IVGG++
Sbjct: 397 KNTPFAGWKCQGWPVMTIVGGKI 419
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/449 (20%), Positives = 174/449 (38%), Gaps = 42/449 (9%)
Query: 22 LIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFE 81
LIKNGKV+ ++ DI I+ VI+Q+ + GV +IDA G +V PG +D H H
Sbjct: 3 LIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVH-- 60
Query: 82 LELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYESWRQKADEKVCCDYAL 141
L G + + R ++ +E+ ++ D+
Sbjct: 61 LREPGGEYKETIETGTKAAARGGFTTVCPXPNTRPVPDSVEHFEALQKLIDDNAQVRVLP 120
Query: 142 HVGITWWSDQVQQEMAEL--CEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIA 199
+ IT + Q+ +E+ + K G +F G+ + + Y+ +
Sbjct: 121 YASIT--TRQLGKELVDFPALVKEGAFAFTD----DGVGVQTASXXYEGXIEAAKVNKAI 174
Query: 200 MVHAENGEII-------DKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDC 252
+ H E+ +I K +++L GI P E+ + R +A C
Sbjct: 175 VAHCEDNSLIYGGAXHEGKRSKELGIPGI----------PNICESVQIARDVLLAEAAGC 224
Query: 253 PLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVL 312
+V H+ +K + + ++ + G H T E + + IP + A +
Sbjct: 225 HYHVCHVSTKESVRVI----RDAKRAGIHVT--AEVTPHHLLLTEDDIPG---NNAIYKX 275
Query: 313 SPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLS 372
+PPLR E L LL+ + +D+ +++K + P G+ G +
Sbjct: 276 NPPLRSTEDREALLEGLLD-GTIDCIATDHAPHARDEKAQPXEK---APFGIVGSETAFP 331
Query: 373 VIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAK 432
+++ V G + ++ V + + FNL + G + E AD+ + + +++ I +
Sbjct: 332 LLYTHFVKNGDWTLQQLVDYLTIKPCETFNL--EYGTLKENGYADLTIIDLDSEQEIKGE 389
Query: 433 THAHACDYNIFEGLVCHGVPEYVIVGGRV 461
D F G +G P V G V
Sbjct: 390 DFLSKADNTPFIGYKVYGNPILTXVEGEV 418
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 99/457 (21%), Positives = 182/457 (39%), Gaps = 56/457 (12%)
Query: 20 RLLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPH 77
+L++KNG V++ + + DI +ENG I+++ +N++VP +IDA G V PG ID H
Sbjct: 48 KLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVPEA-EIIDAKGLIVCPGFIDIH 106
Query: 78 THFELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKT--YESWRQKADEKV 135
H L G T +D I+ +P + T QK+
Sbjct: 107 VH--LRDPGQTYKEDIESGSRCAVAGGFTTIV--CMPNTNPPIDNTTVVNYILQKSKSVG 162
Query: 136 CCDYALHVGITWWSDQVQQEMAEL--CEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIK 193
C L G T + +E+A+ ++ G +F G ++ + A
Sbjct: 163 LC-RVLPTG-TITKGRKGKEIADFYSLKEAGCVAFTD----DGSPVMDSSVMRKALELAS 216
Query: 194 NLGAIAMVHAEN-----GEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIAN 248
LG M H E+ G I + LL + PE ++ + R +A
Sbjct: 217 QLGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQ---------IARDGILAQ 267
Query: 249 QVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCT----LYGETLAAAVGTHANQIPCTW 304
+ +++ H+ +K + + + + +++ +K L+ E G +A
Sbjct: 268 RTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANAR------ 321
Query: 305 HDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGV 364
++PPLR E L+ + + +D+ +KEL + + G+
Sbjct: 322 -------VNPPLRKKEDR-LALIEGVKRGIIDCFATDHAPHQTFEKELVEFAMP----GI 369
Query: 365 NGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYK 424
G+Q L E GI+S +K + + + N A+I + G + GS ADI +++
Sbjct: 370 IGLQTALPSALEL-YRKGIISLKKLIEMFTINPARIIGV--DLGTLKLGSPADITIFDPN 426
Query: 425 AKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
+ ++ +T+ G V G Y I G++
Sbjct: 427 KEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKM 463
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 99/457 (21%), Positives = 182/457 (39%), Gaps = 56/457 (12%)
Query: 20 RLLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPH 77
+L++KNG V++ + + DI +ENG I+++ +N++VP +IDA G V PG ID H
Sbjct: 3 KLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVPEA-EIIDAKGLIVCPGFIDIH 61
Query: 78 THFELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKT--YESWRQKADEKV 135
H L G T +D I+ +P + T QK+
Sbjct: 62 VH--LRDPGQTYKEDIESGSRCAVAGGFTTIV--CMPNTNPPIDNTTVVNYILQKSKSVG 117
Query: 136 CCDYALHVGITWWSDQVQQEMAEL--CEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIK 193
C L G T + +E+A+ ++ G +F G ++ + A
Sbjct: 118 LC-RVLPTG-TITKGRKGKEIADFYSLKEAGCVAFTD----DGSPVMDSSVMRKALELAS 171
Query: 194 NLGAIAMVHAEN-----GEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIAN 248
LG M H E+ G I + LL + PE ++ + R +A
Sbjct: 172 QLGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQ---------IARDGILAQ 222
Query: 249 QVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCT----LYGETLAAAVGTHANQIPCTW 304
+ +++ H+ +K + + + + +++ +K L+ E G +A
Sbjct: 223 RTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANAR------ 276
Query: 305 HDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGV 364
++PPLR E L+ + + +D+ +KEL + + G+
Sbjct: 277 -------VNPPLRKKEDR-LALIEGVKRGIIDCFATDHAPHQTFEKELVEFAMP----GI 324
Query: 365 NGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYK 424
G+Q L E GI+S +K + + + N A+I + G + GS ADI +++
Sbjct: 325 IGLQTALPSALEL-YRKGIISLKKLIEMFTINPARIIGV--DLGTLKLGSPADITIFDPN 381
Query: 425 AKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
+ ++ +T+ G V G Y I G++
Sbjct: 382 KEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKM 418
>pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From
Porphyromonas Gingivalis
Length = 452
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 100/485 (20%), Positives = 176/485 (36%), Gaps = 51/485 (10%)
Query: 16 SSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGV---------RVIDAAG 66
S+ ++L++N + N K + I+ I + I+ G + VI+ +G
Sbjct: 1 SNAXKILLRNALITNEGKTFPGSVXIDGAFISR-----IIEGELPADDNLSADEVIECSG 55
Query: 67 SYVIPGGIDPHTHFELELMGATSVDDFYHXXXXXXXXXXXXIIDFALPRKGESLIKTYES 126
+ PG ID HF G T D + +
Sbjct: 56 LRLFPGCIDDQVHFREP--GLTHKATIASESRAAVAGGVTSFXDXPNTNPPTTXWERLLE 113
Query: 127 WRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFM-AYKGLYMLSDGEL 185
RQ + +Y G T +D + + + +KH V F+ + G ++ + E
Sbjct: 114 KRQIGADTAWANYGFFFGGT--NDNIDE--IKRVDKHLVPGLXLFLGSSTGNXLVDNKET 169
Query: 186 YDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPE--GHQLSRPEEVEAEAVTRA 243
+ +L + H E EII N + A + H L R EE + A
Sbjct: 170 LEKIFGECDL--LIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEA 227
Query: 244 CTIANQVDCPLYVVHI-----MSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHAN 298
+A + + L+++H+ +S D +++ + H + +T +G N
Sbjct: 228 VELAERXNARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLG---N 284
Query: 299 QIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFT 358
+I W+ P E+ L + + +D+ +KE S
Sbjct: 285 RI--KWN---------PAIKKESDREALRAAVRNGRIDIIATDHAPHLLREKE---GSCL 330
Query: 359 HIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADI 418
+G VQ L + E GI S E+ V+ T+ A +F + K+G I G AD+
Sbjct: 331 QAASGGPLVQHSLLALLEL-CNQGIFSIEEIVSKTAHIPATLFAI-EKRGYIRPGYYADL 388
Query: 419 VVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478
V+ + + T+SA C ++ FEG Y V G C+ R+A+ +
Sbjct: 389 VLVDPSSPHTVSADNILSLCGWSPFEGFTFSHSVAYTFVNG--CLAYAKGRLAESRPTVH 446
Query: 479 PTHTN 483
P N
Sbjct: 447 PLFFN 451
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution -
A New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution -
A New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution -
A New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution -
A New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 18 QNRLLIKN-GKVVNADKISDL----DIYIENGVIQQLGRNLIV--PGGVRVIDAAGSYVI 70
++ +IKN GK+V+ D S + I +E+G+I +G ++ G +IDAAGS V
Sbjct: 1 MSKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVT 60
Query: 71 PGGIDPHTHFE 81
PG +D H H
Sbjct: 61 PGLLDTHVHVS 71
>pdb|3MKV|A Chain A, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|B Chain B, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|C Chain C, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|D Chain D, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|E Chain E, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|F Chain F, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|G Chain G, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|H Chain H, Crystal Structure Of Amidohydrolase Eaj56179
Length = 426
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 17 SQNRLLIKNGKVVNADK---ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGG 73
S L +NG +++ D + +I IE+G I+++ I VID G ++PG
Sbjct: 2 SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGL 61
Query: 74 IDPHTH 79
ID H H
Sbjct: 62 IDLHVH 67
>pdb|1UBP|C Chain C, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|C Chain C, Structure Of Native Urease From Bacillus Pasteurii
pdb|3UBP|C Chain C, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1S3T|C Chain C, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|C Chain C, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 570
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSY 68
LL+ N +++ I DI +++G I +G+ N+IV VI A G
Sbjct: 69 LLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKI 128
Query: 69 VIPGGIDPHTHF 80
V GGID H HF
Sbjct: 129 VTAGGIDTHVHF 140
>pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
Length = 570
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSY 68
LL+ N +++ I DI +++G I +G+ N+IV VI A G
Sbjct: 69 LLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKI 128
Query: 69 VIPGGIDPHTHF 80
V GGID H HF
Sbjct: 129 VTAGGIDTHVHF 140
>pdb|3QGA|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGK|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
Length = 568
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSY 68
L+I N +++ I DI I+NG I +G+ +++V G + G
Sbjct: 67 LVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMI 126
Query: 69 VIPGGIDPHTHF 80
+ GGID HTHF
Sbjct: 127 ITAGGIDSHTHF 138
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 38 DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFEL 82
D+ + NG ++++G N+ P ++D G ++ PG +D H+H L
Sbjct: 25 DVLVSNGKVEKVGENIEDPDA-EIVDLTGKFLFPGFVDAHSHIGL 68
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 387 EKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
E + + + N AKI L + G I G DAD+VVW+
Sbjct: 330 EDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVWS 365
>pdb|2OGJ|A Chain A, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|B Chain B, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|C Chain C, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|D Chain D, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|E Chain E, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|F Chain F, Crystal Structure Of A Dihydroorotase
Length = 417
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 18 QNRLLIKNGKVVNADK---ISDLDIYIE-NGVIQQLGRNLIVPGGVRVIDAAGSYVIPGG 73
Q +L+ N K V K S DI I +G I +G L P + IDA G+++ PG
Sbjct: 14 QAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGW 73
Query: 74 IDPHTHF 80
+D H H
Sbjct: 74 VDLHVHI 80
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From
Agrobacterium Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From
Agrobacterium Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 21 LLIKNGKVVNA--DKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
+LI G +V+ ++ DI I +I + +VIDA G+YV PG ID H
Sbjct: 37 VLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHX 96
Query: 79 HFE 81
H E
Sbjct: 97 HIE 99
>pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 67 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 126
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 127 AGGIDTHIHW 136
>pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1KRA|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1KRC|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 67 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 126
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 127 AGGIDTHIHW 136
>pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
Length = 566
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 67 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 126
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 127 AGGIDTHIHW 136
>pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
pdb|4EP8|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 100 K
pdb|4EPB|C Chain C, Final Urease Structure For Radiation Damage Experiment At
100 K
pdb|4EPD|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 300 K
pdb|4EPE|C Chain C, Final Urease Structure For Radiation Damage Experiment At
300 K
Length = 566
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 67 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 126
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 127 AGGIDTHIHW 136
>pdb|1KRB|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native
pdb|1EJX|C Chain C, Crystal Structure Of Wild-Type Klebsiella Aerogenes Urease
At 100k
pdb|1EJW|C Chain C, Crystal Structure Of Wild-type Klebsiella Aerogenes Urease
At 298k
pdb|2KAU|C Chain C, The Crystal Structure Of Urease From Klebsiella Aerogenes
At 2.2 Angstroms Resolution
Length = 567
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|C Chain C, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
Length = 567
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant
Length = 567
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant
Length = 567
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant
Length = 567
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR--------NLIVPGG--VRVIDAAGSYVI 70
L++ N +V+ I DI +++G I +G+ N+ +P G VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHF 80
GGID H H+
Sbjct: 128 AGGIDTHIHW 137
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 22 LIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSYV 69
+I N +++ I DI I++G+I +G+ N+I+ VI G V
Sbjct: 340 VITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIV 399
Query: 70 IPGGIDPHTHF 80
G ID H H+
Sbjct: 400 TAGAIDCHVHY 410
>pdb|4H9M|A Chain A, The First Jack Bean Urease (Canavalia Ensiformis) Complex
Obtained At 1.52 Resolution
Length = 840
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 22 LIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSYV 69
+I N +++ I DI I++G+I +G+ N+I+ VI G V
Sbjct: 340 VITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIV 399
Query: 70 IPGGIDPHTHF 80
G ID H H+
Sbjct: 400 TAGAIDCHVHY 410
>pdb|4GY7|A Chain A, Crystallographic Structure Analysis Of Urease From Jack
Bean (Canavalia Ensiformis) At 1.49 A Resolution
Length = 840
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 22 LIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSYV 69
+I N +++ I DI I++G+I +G+ N+I+ VI G V
Sbjct: 340 VITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIV 399
Query: 70 IPGGIDPHTHF 80
G ID H H+
Sbjct: 400 TAGAIDCHVHY 410
>pdb|2VHL|A Chain A, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
pdb|2VHL|B Chain B, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
Length = 396
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 392 VTSTNAAKIFNLYPKKGVIAEGSDADIVV 420
+TS NAAK ++ +KG + G DAD+V+
Sbjct: 342 ITSENAAKQLGIFDRKGSVTVGKDADLVI 370
>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 29/100 (29%)
Query: 2 SNNTPLKKVPIHLQSSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRV 61
++ PLKKV + L+I +GKV+ A ++ + ++ G +
Sbjct: 13 TSFNPLKKV--------SGLVISHGKVIYAGD-------------SEVAKKIVELSGGEI 51
Query: 62 IDAAGSYVIPGGIDPHTHFE--------LELMGATSVDDF 93
+D G YV+P D H H + ++L GA S+++
Sbjct: 52 VDLKGKYVMPAFFDSHLHLDELGMSLEMVDLRGAKSIEEL 91
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIF 443
++ E+ + T+ NAAK L + G + G AD +W+ + + + + IF
Sbjct: 355 MTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAIWDIERPAELVYRIGFNPLHARIF 414
Query: 444 EG 445
+G
Sbjct: 415 KG 416
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 184 ELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTR- 242
++YDA + ++ I + EN IID++ ++ +G+ EG + A+ V +
Sbjct: 47 DIYDALAGTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKY 106
Query: 243 ACTIANQVDCPLYV----VHIMSKAAGDAMAYKRKELMKKGKHC--TLYGETLAAAVGTH 296
A IA D ++V V +M+ A ++R ++ G H + +A G H
Sbjct: 107 AKKIAEICDTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVH 166
Query: 297 ANQIPCTWHDQAAHVLSPPL 316
+++ + + P L
Sbjct: 167 IDEVRTRIIGEHGDSMVPLL 186
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIF 443
++ E+ + T+ NAAK L + G + G AD +W+ + + + + IF
Sbjct: 353 MTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAIWDIERPAELVYRIGFNPLHARIF 412
Query: 444 EG 445
+G
Sbjct: 413 KG 414
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus
Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus
Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed
With Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed
With Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 60 RVIDAAGSYVIPGGIDPHTHF 80
+ID +G V PG +DPHTH
Sbjct: 63 EIIDCSGRLVTPGLVDPHTHL 83
>pdb|2QT3|A Chain A, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp.
Strain Adp Complexed With Zn
pdb|2QT3|B Chain B, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp.
Strain Adp Complexed With Zn
Length = 403
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVR-VIDAAGSYVIPGGIDPHTH 79
L+I+N + D + D+ I + + +I+ + + G V+ IDA G+ V PG +D HTH
Sbjct: 7 LIIRNAYLSEKDSVYDIGI-VGDRIIKIEAK---IEGTVKDEIDAKGNLVSPGFVDAHTH 62
Query: 80 FE 81
+
Sbjct: 63 MD 64
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 117 GESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVN 166
GE L+ WR+ +Y VG+ +W +E EL ++HGV
Sbjct: 304 GEHLVDLTPEWRRLHMVDAIKEY---VGVDFWRQMSDEEARELAKEHGVE 350
>pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
pdb|3HPA|B Chain B, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
Length = 479
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 9 KVPIHLQSSQNRLLIKNGKVV-----NADKISDLDIYIENGVIQQLGRNLIVPGGV-RVI 62
+ P S LL+K+ V+ ++ D +YIE+ I +G + +P V+
Sbjct: 19 RAPNTSSSRPKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADEVL 78
Query: 63 DAAGSYVIPGGIDPHTHFELELMGAT 88
D G VIPG ++ H H L A
Sbjct: 79 DLRGHLVIPGLVNTHHHMYQSLTRAV 104
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine
Carboxypeptidase Cc2672 From Caulobacter Crescentus
Cb15 Complexed With N-Methyl Phosphonate Derivative Of
L-Arginine
Length = 403
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 17 SQNRLL-IKNGKVVNADKISDLDIYIENGVIQQLGRNL-IVPGGVRVIDAAGSYVIPGGI 74
S RLL + +GK V+ + + + +G I +G+ VP G +D G ++PG I
Sbjct: 7 SAARLLDVASGKYVD-----NPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGLI 61
Query: 75 DPHTHFE 81
D H H +
Sbjct: 62 DMHVHLD 68
>pdb|4I95|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_00036)
From Bacteroides Eggerthii Dsm 20697 At 1.81 A
Resolution
pdb|4I95|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_00036)
From Bacteroides Eggerthii Dsm 20697 At 1.81 A
Resolution
Length = 142
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 353 GKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAE 412
G+D P + G+ + E +PG+L P V S + +I N I
Sbjct: 1 GQDKAAFEPAHLQGIWQLCHYVSENPDIPGVLKPSNTFKVLSDD-GRIVNF-----TIRP 54
Query: 413 GSDADIVVWNYKAKRTISAKTHAHACDYNI 442
G+DA ++ Y R ISA + + + NI
Sbjct: 55 GTDA--IITGYGTYRQISAAAYKESIEKNI 82
>pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSB|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSC|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
pdb|3LSC|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
Length = 456
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 33 KISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
++ D DI I+ I +G++L R ID G +PG I+ H H
Sbjct: 19 ELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLINSHQHL 66
>pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
pdb|3LS9|B Chain B, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
Length = 456
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 33 KISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
++ D DI I+ I +G++L R ID G +PG I+ H H
Sbjct: 19 ELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLINSHQHL 66
>pdb|3SQN|A Chain A, Putative Mga Family Transcriptional Regulator From
Enterococcus Faecalis
pdb|3SQN|B Chain B, Putative Mga Family Transcriptional Regulator From
Enterococcus Faecalis
Length = 485
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 275 LMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPD 319
++ + +YGETLA+A+ TH +Q+ + ++ + RPD
Sbjct: 267 FLESWNYDNVYGETLASALHTHYSQLRKSLQQFVTNLSTEEARPD 311
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 38 DIYIENGVIQQLGRNL---IVPGGVRVIDAAGSYVIPGGIDPHTHF 80
D+ + NG I + N+ IVP V+D +G + PG ID H H
Sbjct: 27 DVLVANGKIIAVASNIPSDIVPN-CTVVDLSGQILCPGFIDQHVHL 71
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 38 DIYIENGVIQQLGRNL---IVPGGVRVIDAAGSYVIPGGIDPHTHF 80
D+ + NG I + N+ IVP V+D +G + PG ID H H
Sbjct: 27 DVLVANGKIIAVASNIPSDIVPN-CTVVDLSGQILCPGFIDQHVHL 71
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 38 DIYIENGVIQQLGRNL---IVPGGVRVIDAAGSYVIPGGIDPHTHF 80
D+ + NG I + N+ IVP V+D +G + PG ID H H
Sbjct: 27 DVLVANGKIIAVASNIPSDIVPN-CTVVDLSGQILCPGFIDQHVHL 71
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E.
Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E.
Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 38 DIYIENGVIQQLGRNL---IVPGGVRVIDAAGSYVIPGGIDPHTHF 80
D+ + NG I + N+ IVP V+D +G + PG ID H H
Sbjct: 27 DVLVANGKIIAVASNIPSDIVPN-CTVVDLSGQILCPGFIDQHVHL 71
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 38 DIYIENGVIQQLGRNL---IVPGGVRVIDAAGSYVIPGGIDPHTHF 80
D+ + NG I + N+ IVP V+D +G + PG ID H H
Sbjct: 27 DVLVANGKIIAVASNIPSDIVPN-CTVVDLSGQILCPGFIDQHVHL 71
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 39 IYIENGVIQQLGRNLIVPGGVRV-IDAAGSYVIPGGIDPHTHFELELMGATSVD 91
+ IENG I++ ++ G V+V +D +G V+P + HTH + L+ + D
Sbjct: 21 VEIENGTIKR-----VLQGEVKVDLDLSGKLVMPALFNTHTHAPMTLLRGVAED 69
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 18/86 (20%)
Query: 150 DQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEII 209
+ +++ + E+CEK GV T + L +S G+ A +A++ AI GE++
Sbjct: 164 EAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINALQGAAAI-------GEVV 214
Query: 210 DKNTQKLLAAGIKGPEGHQLSRPEEV 235
D +T + A +RPEE+
Sbjct: 215 DADTIYQITAT---------ARPEEM 231
>pdb|3EGJ|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3EGJ|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3IV8|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|C Chain C, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|D Chain D, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
Length = 381
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 275 LMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENA 334
+MKKG H + + + T + I C D A V L P+ P H+ L+
Sbjct: 137 VMKKGIHSVDF---IRPSDDTMIDTI-CANSDVIAKV---TLAPENNKPEHIEKLVKAGI 189
Query: 335 LQTTGSDNCTFNKNQK--ELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGIL-SPEKFVA 391
+ + G N T+++ +K E G TH+ N + + R E GVV I +PE +
Sbjct: 190 VVSIGHTNATYSEARKSFESGITFATHLFNAMTPMVGR-----EPGVVGAIYDTPEVYAG 244
Query: 392 VTS 394
+ +
Sbjct: 245 IIA 247
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 150 DQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEII 209
+ +++ + E+CEK GV T + L +S G+ A +A++ AI GE++
Sbjct: 164 EAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINALQGAAAI-------GEVV 214
Query: 210 DKNT 213
D +T
Sbjct: 215 DADT 218
>pdb|1V4Y|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 38 DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
D+ + I +G +L R ID AG V PG ID HTH
Sbjct: 42 DVGVRGDRIAAVG-DLSASSARRRIDVAGKVVSPGFIDSHTH 82
>pdb|1RJQ|A Chain A, The Crystal Structure Of The D-Aminoacylase Mutant D366a
pdb|1RJR|A Chain A, The Crystal Structure Of The D-Aminoacylase D366a Mutant
In Complex With 100mm Zncl2
pdb|1RK5|A Chain A, The D-Aminoacylase Mutant D366a In Complex With 100mm
Cucl2
Length = 496
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 38 DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
D+ + I +G +L R ID AG V PG ID HTH
Sbjct: 42 DVGVRGDRIAAVG-DLSASSARRRIDVAGKVVSPGFIDSHTH 82
>pdb|1M7J|A Chain A, Crystal Structure Of D-Aminoacylase Defines A Novel
Subset Of Amidohydrolases
Length = 484
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 38 DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
D+ + I +G +L R ID AG V PG ID HTH
Sbjct: 30 DVGVRGDRIAAVG-DLSASSARRRIDVAGKVVSPGFIDSHTH 70
>pdb|1RJP|A Chain A, Crystal Structure Of D-Aminoacylase In Complex With
100mm Cucl2
pdb|1RK6|A Chain A, The Enzyme In Complex With 50mm Cdcl2
pdb|1V51|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 38 DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
D+ + I +G +L R ID AG V PG ID HTH
Sbjct: 42 DVGVRGDRIAAVG-DLSASSARRRIDVAGKVVSPGFIDSHTH 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,767,247
Number of Sequences: 62578
Number of extensions: 809456
Number of successful extensions: 2123
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1968
Number of HSP's gapped (non-prelim): 148
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)