RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10113
(596 letters)
>gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins;
DHPases are a family of enzymes that catalyze the
reversible hydrolytic ring opening of the amide bond in
five- or six-membered cyclic diamides, like
dihydropyrimidine or hydantoin. The hydrolysis of
dihydropyrimidines is the second step of reductive
catabolism of pyrimidines in human. The hydrolysis of
5-substituted hydantoins in microorganisms leads to
enantiomerically pure N-carbamyl amino acids, which are
used for the production of antibiotics, peptide
hormones, pyrethroids, and pesticides. HYDs are
classified depending on their stereoselectivity. This
family also includes collapsin response regulators
(CRMPs), cytosolic proteins involved in neuronal
differentiation and axonal guidance which have strong
homology to DHPases, but lack most of the active site
residues.
Length = 447
Score = 668 bits (1727), Expect = 0.0
Identities = 240/455 (52%), Positives = 295/455 (64%), Gaps = 8/455 (1%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+IKNG +V AD DI IE+G I +G NL PGGV VIDA G YV+PGGIDPHTH
Sbjct: 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHL 60
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
EL MG + DDF GT+AA AGGTTTIIDFA+P KG+SL++ E WR KAD K DY
Sbjct: 61 ELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYG 120
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
H+ IT W+D V +E+ EL K G++SFK FMAYKGL M+ D EL D K LGA+ M
Sbjct: 121 FHMIITDWTDSVIEELPELV-KKGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVM 179
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
VHAENG++I + +KLLA G GPE H LSRP EVEAEA RA +A PLY+VH+
Sbjct: 180 VHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239
Query: 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDE 320
SK A D +A RK+ + +YGET + + W + A +V SPPLRP E
Sbjct: 240 SKEAADEIARARKKGLP------VYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKE 293
Query: 321 TTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV 380
L L+ LQT GSD+C FN QK GKD FT IPNGV GV+ R+ ++W +GV
Sbjct: 294 D-QEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVA 352
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
G ++ EKFV +TSTN AKIF LYP+KG IA GSDAD+V+W+ A++TISA TH H DY
Sbjct: 353 KGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDY 412
Query: 441 NIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQG 475
NIFEG+ G P I G+V V++G L +G G
Sbjct: 413 NIFEGMKVKGWPVVTISRGKVVVEDGELVGEKGSG 447
>gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated.
Length = 459
Score = 598 bits (1544), Expect = 0.0
Identities = 213/475 (44%), Positives = 269/475 (56%), Gaps = 24/475 (5%)
Query: 20 RLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
LIKNG VV AD D+ IE+G I +G N G VIDA G YV+PGGIDPHTH
Sbjct: 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTH 57
Query: 80 FELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDY 139
E+ G S DDF GT+AA GGTTTIIDFAL KG+SL + E+W KA K DY
Sbjct: 58 MEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDY 117
Query: 140 ALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIA 199
H+ IT W++ V EM EL E G+ SFK FMAYKG ML D EL A LGA+
Sbjct: 118 GFHMIITDWNEVVLDEMPELVE-EGITSFKLFMAYKGALMLDDDELLRALQRAAELGALP 176
Query: 200 MVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHI 259
MVHAENG+ I KLLA G GPE H LSRP EVE EA RA +A PLY+VH+
Sbjct: 177 MVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236
Query: 260 MSKAAGDAMAYKRKELMKKGKHCTLYGETLA------AAVGTHANQIPCTWHDQAAHVLS 313
K A +A+ R + ++GET + + W + A +V+S
Sbjct: 237 SCKEALEAIRRARARGQR------VFGETCPQYLLLDESEYDGPD-----WFEGAKYVMS 285
Query: 314 PPLRPDETTPTHLLTLLNENALQTTGSDNCTFN-KNQKELGKDSFTHIPNGVNGVQDRLS 372
PPLR E L L + LQ +D+C F + +K+LG+ FT IPNG GV+DR+
Sbjct: 286 PPLRDKEHQ-DALWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMP 344
Query: 373 VIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAK 432
+++ +GV+ G ++ +FV +TSTN AKIF LYP+KG IA G+DADIV+W+ A +TISA
Sbjct: 345 LLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISAS 404
Query: 433 THAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFV 487
T DYN +EG G P + G V V++G R G G +L V
Sbjct: 405 TLHSNVDYNPYEGFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKRKPFQAVV 459
>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase. This model represents
the D-hydantoinase (dihydropyrimidinase) which primarily
converts 5,6-dihydrouracil to 3-ureidopropanoate but
also acts on dihydrothymine and hydantoin. The enzyme is
a metalloenzyme.
Length = 454
Score = 558 bits (1439), Expect = 0.0
Identities = 220/461 (47%), Positives = 282/461 (61%), Gaps = 8/461 (1%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
LI+ G VVNAD + D+ IE G I +G NL P V VIDA G YV+PGGID HTH
Sbjct: 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGSNLQPPDAVEVIDATGKYVLPGGIDVHTHL 60
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
E+ G + DDF+ GTKAA AGGTTTIIDFALP KGESL + E+W +KA+ K DY
Sbjct: 61 EMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHEKAEGKSVIDYG 120
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
H+ IT W+D V +E + G+ SFK FMAYK L M+ D EL++ K LGA+
Sbjct: 121 FHMMITDWNDHVLEEHIPEVVEEGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQ 180
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
VHAENG++I + +LLA G GPE H LSRP E EAEAV RA +A D PLYVVH+
Sbjct: 181 VHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALADAPLYVVHVS 240
Query: 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDE 320
+ A D +A R+ K +YGET + + A +V SPPLR ++
Sbjct: 241 TADAVDEIAEARE------KGQPVYGETCPQYLVLDDTAYDKPGFEGAKYVCSPPLR-EK 293
Query: 321 TTPTHLLTLLNENALQTTGSDNCTFNKNQK-ELGKDSFTHIPNGVNGVQDRLSVIWEKGV 379
L + L+ ALQT GSD+C FN QK +GKD FT IPNG GV++R+++++++GV
Sbjct: 294 EDQDALWSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGV 353
Query: 380 VPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACD 439
G ++ EKFV +TSTN AKIFN+YP+KG IA GSDADIV+W+ ISA+TH D
Sbjct: 354 AKGRITLEKFVELTSTNPAKIFNMYPQKGTIAVGSDADIVIWDPNRTTVISAETHHDNAD 413
Query: 440 YNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPT 480
YN FEG G V+ GRV V++G G G ++
Sbjct: 414 YNPFEGFKVQGAVVSVLSRGRVVVEDGQFVGTAGAGRFVKR 454
>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase.
Length = 486
Score = 495 bits (1276), Expect = e-171
Identities = 214/474 (45%), Positives = 291/474 (61%), Gaps = 15/474 (3%)
Query: 17 SQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDP 76
S ++LIK G VVNA D+Y+E+G+I + NL VP VRVIDA G +V+PGGIDP
Sbjct: 3 SSTKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDP 62
Query: 77 HTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVC 136
HTH + MG ++DDF+ G AA+AGGTT IDF +P G +L+ YE++ +KA EK C
Sbjct: 63 HTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNG-NLLAGYEAYEKKA-EKSC 120
Query: 137 CDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLG 196
DY H+ IT W D V ++M L ++ G+NSFK FMAYKG M++D L + F K+LG
Sbjct: 121 MDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTDELLLEGFKRCKSLG 180
Query: 197 AIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256
A+AMVHAENG+ + + ++++ GI GPEGH LSRP +E EA RA +A V+ PLYV
Sbjct: 181 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYV 240
Query: 257 VHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAA--AVGTHANQIPCTWHDQAAHVLSP 314
VH+MS A + +A RK + + GE + + + P + + +V+SP
Sbjct: 241 VHVMSIDAMEEIARARKSGQR------VIGEPVVSGLVLDDSKLWDP-DFTIASKYVMSP 293
Query: 315 PLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVI 374
P+RP L L+ LQ G+D+C FN QK GKD F IPNGVNG+++R+ ++
Sbjct: 294 PIRPAGHGKA-LQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLV 352
Query: 375 WEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTH 434
W+ V G +SP +V VTST AKIFN+YP+KG I GSDADI++ N + TISAKTH
Sbjct: 353 WDTMVESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAKTH 412
Query: 435 AHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFVY 488
D N++EG G E I GRV + G L+V +G G Y+ PPF Y
Sbjct: 413 HSRIDTNVYEGRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIEM---PPFSY 463
>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional.
Length = 477
Score = 345 bits (888), Expect = e-113
Identities = 171/467 (36%), Positives = 251/467 (53%), Gaps = 20/467 (4%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+I+ G VV A DI I G I LG L G R IDA G V+PGG+D H H
Sbjct: 6 LVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--GPGAREIDATGRLVLPGGVDSHCHI 63
Query: 81 E-LELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDY 139
+ G DDFY GT +A GGTTT+I FA +G+SL + E + ++A K DY
Sbjct: 64 DQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDY 123
Query: 140 ALHVGITWWSDQV-QQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAI 198
A H+ + +++V +E+ L + G SFK FM Y L L D ++ D + + GA+
Sbjct: 124 AFHLIVADPTEEVLTEELPALIAQ-GYTSFKVFMTYDDL-KLDDRQILDVLAVARRHGAM 181
Query: 199 AMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVH 258
MVHAEN ++I T++LLAAG+ P+ H +SRP E EA RA +A VD P+ +VH
Sbjct: 182 VMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVH 241
Query: 259 IMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRP 318
+ + A + + R +K ++ ET + A + + A ++ SPP R
Sbjct: 242 VSGREAAEQIRRARGRGLK------IFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPR- 294
Query: 319 DETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKD------SFTHIPNGVNGVQDRLS 372
D+ + L + + SD+ F + + GK SF I NG+ G++ RL
Sbjct: 295 DKANQEAIWNGLADGTFEVFSSDHAPFRFDDTD-GKLAAGANPSFKAIANGIPGIETRLP 353
Query: 373 VIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAK 432
+++ +GVV G +S +FVA+TSTN AK++ LYP+KG IA G+DADI +W+ + TI+
Sbjct: 354 LLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNA 413
Query: 433 THAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLP 479
HA DY +EG+ G P V+ GRV V++G L +G G +L
Sbjct: 414 DLHHAADYTPYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLA 460
>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 292 bits (750), Expect = 3e-93
Identities = 132/467 (28%), Positives = 208/467 (44%), Gaps = 53/467 (11%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
LLIKN +VV+ + DI I++G I +G+NL G +IDA G V+PG +D H HF
Sbjct: 3 LLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHF 62
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
G + F G++AA AGG TT++D + + E ++A K DYA
Sbjct: 63 REP--GFEHKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYA 120
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
+ G+T + + E+ FK FM L D L +A LGA+ +
Sbjct: 121 FYGGLTKGNLGKLELT----ERGVEAGFKGFMDDSTG-ALDDDVLEEALEYAAELGALIL 175
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
VHAE+ ++I + ++ G++ PE RP EA A+ R +A +++ HI
Sbjct: 176 VHAEDDDLIA---EGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHIS 232
Query: 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWH----------DQAAH 310
+K + + + + E ++ + E T H D
Sbjct: 233 TKESVELIRAAKAEGIR------VTAEV--------------TPHHLLLDEEDIEDLGTL 272
Query: 311 -VLSPPLRPDETTPTH---LLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNG 366
++PPLR +E L L + + SD+ +K L F P+G+ G
Sbjct: 273 AKVNPPLRDEE----DREALWEALKDGVIDVIASDHAPHTLEEKRLP---FEEAPSGIPG 325
Query: 367 VQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAK 426
++ L ++ V G LS E+ V + STN A+IF L P KG I EG+DAD+V+ + +
Sbjct: 326 LETALPLLLT-LVKKGRLSLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDEE 383
Query: 427 RTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQG 473
TI A+ + FEG G I+ G+V ++G + G
Sbjct: 384 WTIRAEELYSKAKNSPFEGFELKGRVVATILRGKVVYEDGEVIAKPG 430
>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid.
Length = 447
Score = 220 bits (563), Expect = 2e-65
Identities = 138/472 (29%), Positives = 209/472 (44%), Gaps = 41/472 (8%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+IKNG+VV D + + DI ++ G I +G ++ VIDA G V+PG ID H H
Sbjct: 2 LVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVH- 60
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQK---ADEKVCC 137
+ G T + F GTKAA AGG TTIID +P T E+ K A K+
Sbjct: 61 -INEPGRTEWEGFETGTKAAAAGGITTIID--MPLNSIPPTTTVENLEAKLEAAQGKLHV 117
Query: 138 DYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYM---LSDGELYDAFSAIKN 194
D G+ + Q + L E GV FK F+ G+ + D +L +A +
Sbjct: 118 DVGFWGGLV--PGNLDQ-LRPLDEA-GVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAK 173
Query: 195 LGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPL 254
G++ VHAEN EI + ++ A G + + SRP E EA+ R +A + C L
Sbjct: 174 TGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRL 233
Query: 255 YVVHIMSKAAGDAMAYKRKELMKKGK------HCTLYGETLAAAVGTHANQIPCTWHDQA 308
++VH+ ++ +A+ L+++ + ET + A +P
Sbjct: 234 HIVHL---SSAEAV-----PLIREARAEGVDVTV----ETCPHYLTFTAEDVP-----DG 276
Query: 309 AHVL--SPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNG 366
+PP+R D L L + SD+ K LGK F G++G
Sbjct: 277 GTEFKCAPPIR-DAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISG 335
Query: 367 VQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAK 426
+Q L V+ + V LS E + N AK+F L +KG IA G DAD VVW+ + +
Sbjct: 336 LQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEE 395
Query: 427 RTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYL 478
T+ A+ + + + G G I+ G V +G + V + G L
Sbjct: 396 FTVDAEDLYYKNKISPYVGRTLKGRVHATILRGTVVYQDGEV-VGEPLGQLL 446
>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines.
Length = 337
Score = 206 bits (527), Expect = 2e-61
Identities = 108/394 (27%), Positives = 162/394 (41%), Gaps = 64/394 (16%)
Query: 68 YVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESW 127
V+PG ID H H +DF G++AA AGG TT+ID + E
Sbjct: 2 LVLPGFIDIHVHLRDPGGTTYK-EDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELK 60
Query: 128 RQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYK--GLYMLSDGEL 185
+ A+E D++ H GI V E+ +L + G+NS K FM Y L+ + DG L
Sbjct: 61 IKLAEESSYVDFSFHAGI--GPGDVTDELKKLFD-AGINSLKVFMNYYFGELFDVDDGTL 117
Query: 186 YDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACT 245
F I + G MVHAE RA
Sbjct: 118 MRTFLEIASRGGPVMVHAE-------------------------------------RAAQ 140
Query: 246 IANQVDCPLYVVHIMSKAAGDAMAYKRKELMK----KGKHCTLYGETLAAAVGTHANQIP 301
+A + +++ H+ S A + + + + + +K H E++ G
Sbjct: 141 LAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWG---- 196
Query: 302 CTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIP 361
++PPLR E L + + T SD+ +K +KE GKD P
Sbjct: 197 ---------KVNPPLRSKEDR-EALWEGVKNGKIDTIASDHAPHSKEEKESGKD-IWKAP 245
Query: 362 NGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVW 421
G G++ RL ++ +GV LS E V + S N A+IF LYPK IA G DAD+V+
Sbjct: 246 PGFPGLETRLPILLTEGV-KRGLSLETLVEILSENPARIFGLYPKG-TIAVGYDADLVIV 303
Query: 422 NYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYV 455
+ K + ++A+ D+ FEG+ G P
Sbjct: 304 DPKKEWKVTAEEIESKADWTPFEGMEVTGKPVST 337
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 193 bits (493), Expect = 2e-55
Identities = 136/465 (29%), Positives = 213/465 (45%), Gaps = 40/465 (8%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+K+G+V + + D+ I+ G I +G++L VIDA G ++PGGID H HF
Sbjct: 4 ALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVHF 63
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKAD---EKVCC 137
G T + +Y G+++A AGG TT++D P + ES+ +KA+ K
Sbjct: 64 --REPGYTHKETWYTGSRSAAAGGVTTVVD--QPNTDPPTV-DGESFDEKAELAARKSIV 118
Query: 138 DYALHVGITWWSDQVQQEMAELCEKHGVNSF-KTFMAYKGLYMLSDGELY-DAFSAIKNL 195
D+ ++ G+T D + L E+ GV + + FMA M D EL+ +A + L
Sbjct: 119 DFGINGGVTGNWDP----LESLWER-GVFALGEIFMADSTGGMGIDEELFEEALAEAARL 173
Query: 196 GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255
G +A VHAE+ ++ D+ L G + RP EA AV RA +A++ ++
Sbjct: 174 GVLATVHAEDEDLFDEL--AKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIH 231
Query: 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPP 315
+ HI S G A + + H +GT ++PP
Sbjct: 232 IAHI-STPEGVDAARREGITCEVTPHHLFLSRRDWERLGTFGK-------------MNPP 277
Query: 316 LRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIW 375
LR ++ L LN+ + SD+ + +K+ P+GV GV+ L ++
Sbjct: 278 LRSEKRREA-LWERLNDGTIDVVASDHAPHTREEKDA---DIWDAPSGVPGVETMLPLLL 333
Query: 376 EKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHA 435
V L E+ VT+ N A+IF L KG IAEG DAD+V+ + A R I
Sbjct: 334 A-AVRKNRLPLERVRDVTAANPARIFGL-DGKGRIAEGYDADLVLVDPDAAREIRGDDLH 391
Query: 436 HACDYNIFEGLVCHGV-PEYVIVGGRVCVDEGNLRVAQGQGNYLP 479
+ FEG+ GV PE +V G V D ++ +G+G +L
Sbjct: 392 SKAGWTPFEGME--GVFPELTMVRGTVVWDGDDINAKRGRGEFLR 434
>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase. This enzyme carries out the
first step in the degradation of allantoin, a
ring-opening hydrolysis. The seed members of this model
are all in the vicinity of other genes involved in the
processes of xanthine/urate/allantoin catabolism.
Although not included in the seed, many eukaryotic
homologs of this family are included above the trusted
cutoff. Below the noise cutoff are related
hydantoinases.
Length = 443
Score = 179 bits (455), Expect = 4e-50
Identities = 121/452 (26%), Positives = 193/452 (42%), Gaps = 28/452 (6%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+I+ G+V+ + + D+ ++ G I +G + I+ ++IDA G V PG +D H H
Sbjct: 2 LIIRGGRVILPNGEREADVGVKGGKIAAIGPD-ILGPAAKIIDAGGLVVFPGVVDTHVHI 60
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKAD---EKVCC 137
G T + F GT+AA AGG TT ID +P T S K + K+
Sbjct: 61 NEP--GRTEWEGFETGTRAAAAGGITTYID--MPLNSIPATTTRASLEAKFEAAKGKLAV 116
Query: 138 DYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGL--YM-LSDGELYDAFSAIKN 194
D G+ + ++ EL E GV FK F++ G + + D +LY +
Sbjct: 117 DVGFWGGLV--PYNLD-DLRELDEA-GVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELAR 172
Query: 195 LGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPL 254
LG + +VHAEN I ++ G G + + SRP E EA+ R +A C +
Sbjct: 173 LGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRV 232
Query: 255 YVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSP 314
+VVH+ S A + + ++E G T+ ET + A ++P +P
Sbjct: 233 HVVHLSSAEAVELITEAKQE----GLDVTV--ETCPHYLTLTAEEVP---DGGTLAKCAP 283
Query: 315 PLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVI 374
P+R LLN + SD+ + K F G+ G+Q L V+
Sbjct: 284 PIRDLANQEGLWEALLN-GLIDCVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVM 340
Query: 375 WEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTH 434
+++ V L E + +TN AK F L +KG IA G DAD V + T++
Sbjct: 341 FDEAVQKRGLPLEDIARLMATNPAKRFGL-AQKGRIAPGKDADFVFVDPDESYTLTPDDL 399
Query: 435 AHACDYNIFEGLVCHGVPEYVIVGGRVCVDEG 466
+ + + G G + G+ D+
Sbjct: 400 YYRHKVSPYVGRTIGGRVRATYLRGQCIYDDE 431
>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 168 bits (428), Expect = 3e-46
Identities = 138/469 (29%), Positives = 199/469 (42%), Gaps = 45/469 (9%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+I+ GKVV + + DI I+NG I ++ + P +IDA G YV PG ID H HF
Sbjct: 5 LIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEISSPAR-EIIDADGLYVFPGMIDVHVHF 63
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQK---ADEKVCC 137
G T + F G+ A AGG TT D +P T E+ K A +K
Sbjct: 64 NEP--GRTHWEGFATGSAALAAGGCTTYFD--MPLNSIPPTVTREALDAKAELARQKSAV 119
Query: 138 DYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYML---SDGELYDAFSAIKN 194
D+AL G+ + + +E+AE GV FK FM+ G D LY+ I
Sbjct: 120 DFALWGGLVPGNLEHLRELAE----AGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAA 175
Query: 195 LGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPL 254
LG I +HAE+ + T + G + SRP E EAV RA A + CPL
Sbjct: 176 LGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGCPL 235
Query: 255 YVVHIMSKAAGDAMAYKRKELMKKG--------KHCTLYGETLAAAVGTHANQIPCTWHD 306
+ VHI S A+ + K K+G H L+ E +G A C
Sbjct: 236 HFVHI-SSGKAVALIAEAK---KRGVDVSVETCPHYLLFTEEDFERIGAVAK---C---- 284
Query: 307 QAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNG 366
+PPLR + L L + SD+ KE D F + G++G
Sbjct: 285 ------APPLR-SRSQKEELWRGLLAGEIDMISSDHSPCPPELKE--GDDFFLVWGGISG 335
Query: 367 VQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAK 426
Q L V+ +G + + E + +TN AK F L P+KG + G+DAD V+ +
Sbjct: 336 GQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGL-PQKGRLEVGADADFVLVDLDET 394
Query: 427 RTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGR-VCVDEGNLRVAQGQ 474
T++ + + + +EG G + G+ V D +GQ
Sbjct: 395 YTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQCVYQDGEVFPPPRGQ 443
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 152 bits (385), Expect = 1e-40
Identities = 118/448 (26%), Positives = 187/448 (41%), Gaps = 59/448 (13%)
Query: 32 DKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVD 91
K +++DI +E G I+++G+ I P VIDA G V+PG ID H H G +
Sbjct: 1 GKETEVDILVEGGRIKKIGKLRIPPD-AEVIDAKGLLVLPGFIDLHVHLRD--PGEEYKE 57
Query: 92 DFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQ 151
D G+KAA GG TT+ D + +T E Q+ + D L+ G+T
Sbjct: 58 DIESGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVT--QGN 115
Query: 152 VQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGE-LYDAFSAIKNL------GAIAMVHAE 204
+E+ E G DG + D S + L G +HAE
Sbjct: 116 QGKELTEA-------YELKEAGAVGRMFTDDGSEVQDILSMRRALEYAAIAGVPIALHAE 168
Query: 205 NGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAA 264
+ ++I G + +RP E E AV R +A CP+++ HI +K +
Sbjct: 169 DPDLIYGGVMHE---GPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKES 225
Query: 265 GDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWH------DQAAHV-----LS 313
+ +G T A V T H + A + ++
Sbjct: 226 ----LELIVKAKSQGIKIT-------AEV---------TPHHLLLSEEDVARLDGNGKVN 265
Query: 314 PPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSV 373
PPLR E L+ L + + +D+ +K F P G+ G++ L +
Sbjct: 266 PPLREKEDR-LALIEGLKDGIIDIIATDHAPHTLEEKTKE---FAAAPPGIPGLETALPL 321
Query: 374 IWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKT 433
+ + +V G++S + + + S N A+IF L P KG + EG+ ADI V++ K + TI+A+T
Sbjct: 322 LLQ-LLVKGLISLKDLIRMLSINPARIFGL-PDKGTLEEGNPADITVFDLKKEWTINAET 379
Query: 434 HAHACDYNIFEGLVCHGVPEYVIVGGRV 461
FEG+ G P I+ G+V
Sbjct: 380 FYSKAKNTPFEGMSLKGKPIATILRGKV 407
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 140 bits (356), Expect = 5e-37
Identities = 119/413 (28%), Positives = 169/413 (40%), Gaps = 71/413 (17%)
Query: 66 GSYVIPGGIDPHTHF-ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTY 124
G ++PG ID H HF E L T +DF G++AA AGG TT++D +P + T
Sbjct: 1 GLLILPGVIDIHVHFREPGL---TYKEDFVSGSRAAAAGGVTTVMD--MPNT-KPPTTTA 54
Query: 125 ESWRQK---ADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLS 181
E+ +K A K DY L+ G+T E E +K +K FM S
Sbjct: 55 EALYEKLRLAAAKSVVDYGLYFGVT------GSEDLEELDKAPPAGYKIFMG------DS 102
Query: 182 DGELYDA----FSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEA 237
G+L D + HAE+ + + +N ++L KG H R E A
Sbjct: 103 TGDLLDDEETLERIFAEGSVLVTFHAEDEDRLRENRKEL-----KGESAHPRIRDAEAAA 157
Query: 238 EAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKE-----------LMKKGKHCTLYG 286
A RA +A + L++ H+ S + K K + + L
Sbjct: 158 VATARALKLARRHGARLHICHV-STPEELKLIKKAKPGVTVEVTPHHLFLDVEDYDRL-- 214
Query: 287 ETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFN 346
TL N PPLR E LL L + + SD+
Sbjct: 215 GTLG-----KVN---------------PPLRSREDR-KALLQALADGRIDVIASDHAPHT 253
Query: 347 KNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPK 406
+K G + P+G+ GV+ L ++ V GILS + V +TS N A+IF +
Sbjct: 254 LEEKRKG---YPAAPSGIPGVETALPLMLTL-VNKGILSLSRVVRLTSHNPARIFGI-KN 308
Query: 407 KGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGG 459
KG IAEG DAD+ V + K +RTI A+ + FEG G P IV G
Sbjct: 309 KGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFEGFEVTGFPVMTIVRG 361
>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
Length = 444
Score = 138 bits (351), Expect = 1e-35
Identities = 132/471 (28%), Positives = 203/471 (43%), Gaps = 60/471 (12%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L++K G VVN D DI I +G I +G +L VID G +V+PG ID HF
Sbjct: 7 LILKGGTVVNPDGEGRADIGIRDGRIAAIG-DLSGASAGEVIDCRGLHVLPGVIDSQVHF 65
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQK---ADEKVCC 137
G +D G++AAV GG T + F +P L T E+ K A ++ C
Sbjct: 66 REP--GLEHKEDLETGSRAAVLGGVTAV--FEMPNT-NPLTTTAEALADKLARARHRMHC 120
Query: 138 DYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFM-AYKGLYMLSDGE-LYDAFSAIKNL 195
D+A +VG T D E+AEL G K FM + G ++ D E L +
Sbjct: 121 DFAFYVGGT--RDNAD-ELAELERLPGCAGIKVFMGSSTGDLLVEDDEGLRRILRNGRRR 177
Query: 196 GAIAMVHAENGEIIDKNTQKLLAAGIKG-PEGHQLSRPEEVEAEAVTRACTIANQVDCPL 254
A H+E+ + +K L ++G P H + R EE A R +A + +
Sbjct: 178 AA---FHSEDEYRL--RERKGLR--VEGDPSSHPVWRDEEAALLATRRLVRLARETGRRI 230
Query: 255 YVVHIMSKAAGDAMAYKRK-------ELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQ 307
+V+H+ + + + + E+ H TL +GT A
Sbjct: 231 HVLHVSTA---EEIDFLADHKDVATVEVTPH--HLTLAAPECYERLGTLA---------- 275
Query: 308 AAHVLSPPLRPDETTPTHLLTL---LNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGV 364
++PP+R H L + + + GSD+ +K + P+G+
Sbjct: 276 ---QMNPPIR----DARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKAK---PYPASPSGM 325
Query: 365 NGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYK 424
GVQ + ++ + V G LS E+FV +TS A+IF + KG IA G DAD + + K
Sbjct: 326 TGVQTLVPIMLDH-VNAGRLSLERFVDLTSAGPARIFGI-AGKGRIAVGYDADFTIVDLK 383
Query: 425 AKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQG 475
+ TI+ + A C + ++G G P IV G+ + +G L V G
Sbjct: 384 RRETITNEWIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGEL-VGPPTG 433
>gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional.
Length = 449
Score = 123 bits (310), Expect = 3e-30
Identities = 114/413 (27%), Positives = 181/413 (43%), Gaps = 42/413 (10%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+IKNG V+ ++ +DI ++ G I +G++L V+DA+G V PG +D HTH
Sbjct: 5 LIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVMDASGLVVSPGMVDAHTH- 61
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADE-KVCCDY 139
+ G + + + GT+AA GG TT+I+ L + ++ + + A + K+ D
Sbjct: 62 -ISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA 120
Query: 140 ALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG-------LYMLSDGELYDAFSAI 192
A G+ ++ E+ E+ GV FK F+A G ++D + Y +
Sbjct: 121 AQLGGLVSYNLDRLHELDEV----GVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKL 176
Query: 193 KNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDC 252
LG +VH EN I D+ ++ G + SRP E EA+ R +A C
Sbjct: 177 GELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGC 236
Query: 253 PLYVVHIMSKAAGDAMAYKRKELMK-KGKHCT----LYGETLAAAVGTHANQIPCTWHDQ 307
L+V HI S + + R+E + C L + +GT A C
Sbjct: 237 RLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE-IGTLAK---C----- 287
Query: 308 AAHVLSPPLRPDETTPTHLLTLLN-ENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNG 366
SPP+R E L N E + C E+ + G+ G
Sbjct: 288 -----SPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCP-----PEMKAGNIMEAWGGIAG 337
Query: 367 VQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIV 419
+Q+ + V++++ V +S F + +TNAA IF L +KG IA G DAD V
Sbjct: 338 LQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-QQKGRIAPGKDADFV 389
>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth.
Length = 374
Score = 120 bits (303), Expect = 1e-29
Identities = 95/413 (23%), Positives = 155/413 (37%), Gaps = 54/413 (13%)
Query: 58 GVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALP--- 114
VIDA G + PG +D H H E G + G KAA AGG TT++ +P
Sbjct: 1 DAEVIDAEGKILAPGLVDLHVHLR-EP-GFEYKETLESGAKAAAAGGFTTVV--CMPNTN 56
Query: 115 --RKGESLIKTYESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCE--KHGVNSFKT 170
++++ + D + + +T +E+ E+ E + G F
Sbjct: 57 PVIDNPAVVELL--KNRAKDVGIVRVLPI-GALT--KGLKGEELTEIGELLEAGAVGFSD 111
Query: 171 FMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGI--KGPEGHQ 228
G + L A L +VH E D + L G+ +G +
Sbjct: 112 ----DGKPIQDAELLRRALEYAAMLDLPIIVHPE-----DPS---LAGGGVMNEGKVASR 159
Query: 229 L---SRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLY 285
L P E E V R +A ++ H+ + + + + + KG T
Sbjct: 160 LGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKA----KGLPVT-- 213
Query: 286 GETLAAAVGTH---ANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDN 342
A V H + +D A V +PPLR E L+ L + + SD+
Sbjct: 214 -----AEVTPHHLLLDDEALESYDTNAKV-NPPLR-SEEDREALIEALKDGTIDAIASDH 266
Query: 343 CTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFN 402
+K+L F P G+ G++ L ++W V G+L+ + STN AKI
Sbjct: 267 APHTDEEKDL---PFAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILG 323
Query: 403 LYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYV 455
L P G + G+ AD+V+++ A+ + +T F+G G
Sbjct: 324 LPP--GRLEVGAPADLVLFDPDAEWIVDEETFRSKSKNTPFDGQKLKGRVLAT 374
>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
Length = 444
Score = 119 bits (301), Expect = 6e-29
Identities = 130/494 (26%), Positives = 198/494 (40%), Gaps = 95/494 (19%)
Query: 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
R+LIKN ++VN KI + D+ IENG I ++ ++ VIDAAG Y++PG ID
Sbjct: 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQV 61
Query: 79 HFELELMGATSVDDFYHGTKAAVAGGTTTIIDF-----------ALPRKGESLIKTYESW 127
HF G T D ++AAVAGG T+ ++ AL K
Sbjct: 62 HFREP--GLTHKGDIASESRAAVAGGITSFMEMPNTNPPTTTLEALEAK----------- 108
Query: 128 RQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYD 187
Q A ++ +Y+ + G T +D + E+ L + V K FM ML D +
Sbjct: 109 YQIAAQRSLANYSFYFGAT--NDNLD-EIKRL-DPKRVCGVKVFMGASTGNMLVDNP--E 162
Query: 188 AFSAI-KNLGAIAMVHAENGEIIDKNTQKLLAA-GIKGP-EGHQLSRPEEVEAEAVTRAC 244
I ++ + H E+ I N K G P E H L R E ++ + A
Sbjct: 163 TLERIFRDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAV 222
Query: 245 TIANQVDCPLYVVHIMSKAAGDAMAYKRKELM------KKGKHCTLYGETLAAAVGTH-- 296
++A + L+V+HI S A KEL K T A V H
Sbjct: 223 SLAKKHGTRLHVLHI-STA---------KELSLFENGPLAEKRIT-------AEVCVHHL 265
Query: 297 ----------ANQIPC-----TWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSD 341
N I C T D+ A L L ++ + +D
Sbjct: 266 WFDDSDYARLGNLIKCNPAIKTASDREA----------------LRQALADDRIDVIATD 309
Query: 342 NCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIF 401
+ +K+ + P+G+ VQ L + E V G LS EK V TS A +F
Sbjct: 310 HAPHTWEEKQGP---YFQAPSGLPLVQHALPALLEL-VHEGKLSLEKVVEKTSHAPAILF 365
Query: 402 NLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
++ ++G I EG AD+V+ + + T++ + + C ++ FEG V G++
Sbjct: 366 DI-KERGFIREGYWADLVLVDLNSPWTVTKENILYKCGWSPFEGRTFRSRVATTFVNGQL 424
Query: 462 CVDEGNLR-VAQGQ 474
G L +GQ
Sbjct: 425 VYHNGQLVESCRGQ 438
>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 118 bits (298), Expect = 1e-28
Identities = 112/477 (23%), Positives = 184/477 (38%), Gaps = 94/477 (19%)
Query: 20 RLLIKNGKVVN-ADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
+LIKNG+V++ D+ I++G I +G N+ G VIDA G V PG +D H
Sbjct: 2 MILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIEAEG-AEVIDATGLVVAPGLVDLHV 60
Query: 79 HFELELMGATSVDDFYHGTKAAVAGGTTT---------IIDFALPRKGESLIKTYESWRQ 129
H G + G++AA AGG TT +ID E
Sbjct: 61 HLREP--GQEDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPE---------VVEYVLD 109
Query: 130 KADEKVCCDYALH-VG-ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSD----- 182
+A E D + VG IT EL E F + G+ SD
Sbjct: 110 RAKEAGLVD--VLPVGAIT-----KGLAGEELTE------FGA-LKEAGVVAFSDDGIPV 155
Query: 183 ---GELYDAFSAIKNLGAIAMVHAENGEIIDK---NTQKLLAA-GIKGPEGHQLSRPEEV 235
+ A K L + H E+ + + N ++ A G+ G P
Sbjct: 156 QDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPG-------IPAVA 208
Query: 236 EAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGT 295
E + R +A +++ H+ + + + + + + G + A V
Sbjct: 209 EEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKA-----------LGIKVTAEVTP 257
Query: 296 HANQIPCTWH----DQA-------AHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCT 344
H H D+ V +PPLR +E L+ L + + +D+
Sbjct: 258 H--------HLLLTDEDLLTYDPNYKV-NPPLRTEEDR-EALIEGLKDGTIDAIATDHAP 307
Query: 345 FNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLY 404
+ +KE F P G+ G++ LS+++ V G+L E+ + + N A+I L
Sbjct: 308 HAREEKECE---FEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGL- 363
Query: 405 PKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
G +AEG AD+V+++ +A+ T+ + A F G+ G Y IV G++
Sbjct: 364 -PAGPLAEGEPADLVIFDPEAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTIVDGKI 419
>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 109 bits (275), Expect = 1e-25
Identities = 116/463 (25%), Positives = 188/463 (40%), Gaps = 53/463 (11%)
Query: 20 RLLIKNGKVVNADKISDL-DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
LLI+N +++ L D+ +E+G I + + VIDA G ++PG IDP
Sbjct: 4 SLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVIDPQV 63
Query: 79 HFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCD 138
HF G +D + ++A GG T+ ++ + + + +A EK +
Sbjct: 64 HFREP--GLEHKEDLFTASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVN 121
Query: 139 YALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGE--LYDAFSAIKNLG 196
Y +G T D + EL + K FM +L D E L F+ L
Sbjct: 122 YGFFIGAT--PDNL----PELLTANPTCGIKIFMGSSHGPLLVDEEAALERIFAEGTRL- 174
Query: 197 AIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256
IA VHAE+ I + AGI P H + EE A A ++ + L++
Sbjct: 175 -IA-VHAEDQARIRARRAEF--AGISDPADHSQIQDEEAALLATRLALKLSKKYQRRLHI 230
Query: 257 VHIMSKAAGDAMAYKRKELMKKGKHCTLYGE---------TLA-AAVGTHANQIPCTWHD 306
+H +S A EL+++ K + E T A +GT A
Sbjct: 231 LH-LSTAI-------EAELLRQDKPSWVTAEVTPQHLLLNTDAYERIGTLAQM------- 275
Query: 307 QAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNG 366
+PPLR E L L + + +D+ +K + + P+G+ G
Sbjct: 276 ------NPPLRSPEDNEA-LWQALRDGVIDFIATDHAPHTLEEKAQP---YPNSPSGMPG 325
Query: 367 VQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAK 426
V+ L ++ + G + + V ST A+ + + P KG IA G DAD+V+ +
Sbjct: 326 VETSLPLMLTA-AMRGKCTVAQVVRWMSTAVARAYGI-PNKGRIAPGYDADLVLVDLNTY 383
Query: 427 RTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLR 469
R + + C ++ FEG G P IVGG++ D G +
Sbjct: 384 RPVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVN 426
>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
Length = 409
Score = 101 bits (254), Expect = 4e-23
Identities = 104/445 (23%), Positives = 170/445 (38%), Gaps = 65/445 (14%)
Query: 26 GKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM 85
G K L+I +E+G I+ + ++ G + + G+ ++P D H HF
Sbjct: 5 GNFYYKGKFDYLEIEVEDGKIKSIKKDA---GNIGKKELKGA-ILPAATDIHVHFRTP-- 58
Query: 86 GATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQK---ADEKVCCDYALH 142
G T +DF GT +A+ GGTT I+D +P IK Y ++ K K D++L+
Sbjct: 59 GETEKEDFSTGTLSAIFGGTTFIMD--MPNN-NIPIKDYNAFSDKLGRVAPKAYVDFSLY 115
Query: 143 VGITWWSDQVQQEMAELCEKHGVNSFKTFMA---YKGLYMLSDGELYDAFSAIKNLGAIA 199
T A + ++ + K +M + GE+ I
Sbjct: 116 SMET-------GNNALILDERSI-GLKVYMGGTTNTNGTDIEGGEI----KKINEANIPV 163
Query: 200 MVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHI 259
HAE E + K+ + K H L+RP E E +AV + L I
Sbjct: 164 FFHAELSECLRKHQFE-----SKNLRDHDLARPIECEIKAVKYVKNLD------LKTKII 212
Query: 260 MSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPD 319
++ D + +E+ H L + + G ++PPLR D
Sbjct: 213 AHVSSIDVIGRFLREVTP--HHLLLNDDMPLGSYGK----------------VNPPLR-D 253
Query: 320 ETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGV 379
T LL SD+ + K+ F + +G+ GV+ R+ + V
Sbjct: 254 RWTQERLLEEYISGRFDILSSDHAPHTEEDKQ----EFEYAKSGIIGVETRVPLFLAL-V 308
Query: 380 VPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACD 439
IL + A +F + KKG I EG DAD + +++ + I+ K C
Sbjct: 309 KKKILPLDVLYKTAIERPASLFGI--KKGKIEEGYDADFMAFDFTNIKKINDKRLHSKCP 366
Query: 440 YNIFEGLVCHGVPEYVIVGGRVCVD 464
+ F G P +VI+ G V +D
Sbjct: 367 VSPFNGFDAI-FPSHVIMRGEVVID 390
>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional.
Length = 398
Score = 99.1 bits (247), Expect = 3e-22
Identities = 112/450 (24%), Positives = 184/450 (40%), Gaps = 75/450 (16%)
Query: 26 GKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF-ELEL 84
GK + +I + I IENG I ++ + G VI G ++PG ID H H + E
Sbjct: 4 GKFLLKGRIVEGGIGIENGRISKISLRDL--KGKEVIKVKGGIILPGLIDVHVHLRDFEE 61
Query: 85 MGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLI--KTYESWRQKADEKVCCDYALH 142
+++ GTKAA+ GG T + D +P ++ KTYE + A++K DYAL+
Sbjct: 62 SYKETIES---GTKAALHGGITLVFD--MPNTKPPIMDEKTYEKRMRIAEKKSYADYALN 116
Query: 143 VGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELY--DAFSAIKNLGAIAM 200
I ++ ++ A+ YK S G ++ + I
Sbjct: 117 FLIAGNCEKAEEIKADF--------------YKIFMGASTGGIFSENFEVDYACAPGIVS 162
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
VHAE+ E+I + PE RP E E A+ RA ++ PL++ HI
Sbjct: 163 VHAEDPELIREF-----------PE-----RPPEAEVVAIERALEAGKKLKKPLHICHIS 206
Query: 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVL---SPPLR 317
+K D + K ++K ++ V H + T D + L PPLR
Sbjct: 207 TK---DGL----KLILKSNL------PWVSFEVTPH--HLFLTRKDYERNPLLKVYPPLR 251
Query: 318 PDETTPTHLLTLL-NENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWE 376
+E L N + + SD+ KE G G+ G++ + ++ +
Sbjct: 252 SEE----DRKALWENFSKIPIIASDHAPHTLEDKEAGA-------AGIPGLETEVPLLLD 300
Query: 377 KGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAH 436
G++S V N A+IF + K I EG+ A+ V++ K + TI A+
Sbjct: 301 -AANKGMISLFDIVEKMHDNPARIFGI--KNYGIEEGNYANFAVFDMKKEWTIKAEELYT 357
Query: 437 ACDYNIFEGLVCHGVPEYVIVGGRVCVDEG 466
+ +EG G I+ G V +++
Sbjct: 358 KAGWTPYEGFKLKGKVIMTILRGEVVMEDD 387
>gnl|CDD|178392 PLN02795, PLN02795, allantoinase.
Length = 505
Score = 99.1 bits (247), Expect = 6e-22
Identities = 107/430 (24%), Positives = 171/430 (39%), Gaps = 64/430 (14%)
Query: 23 IKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPG---GVRVIDAAGSYVIPGGIDPHTH 79
+ + +VV + + +E G I + + P V+D + V+PG ID H H
Sbjct: 48 LYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVH 107
Query: 80 FELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQK---ADEKVC 136
L G T + F GTKAA AGG TT++D +P + E+ K A K
Sbjct: 108 --LNEPGRTEWEGFPTGTKAAAAGGITTLVD--MPLNSFPSTTSVETLELKIEAAKGK-- 161
Query: 137 CDYALHVGITWWSDQVQQ------EMAELCEKHGVNSFKTFMAYKGL---YMLSDGELYD 187
L+V + +W V + + EL + G K+FM G+ M + +
Sbjct: 162 ----LYVDVGFWGGLVPENAHNASVLEELLDA-GALGLKSFMCPSGINDFPMTTATHIKA 216
Query: 188 AFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIA 247
A + G +VHAE ++ +++ L A + + SRP E EA+ + +A
Sbjct: 217 ALPVLAKYGRPLLVHAEVVSPVESDSR--LDADPRSYSTYLKSRPPSWEQEAIRQLLEVA 274
Query: 248 NQVD-------CPLYVVHIMSKAAGDAMAYKRKELMKKGKH---------CTLYGETLAA 291
+++VH+ A ++ EL+K+ K C Y A
Sbjct: 275 KDTRPGGVAEGAHVHIVHLSD--AESSL-----ELIKEAKAKGDSVTVETCPHYLAFSAE 327
Query: 292 AVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKE 351
+ + C +PP+R D L L + + SD+ + K
Sbjct: 328 EIPDGDTRYKC----------APPIR-DAANRELLWKALLDGDIDMLSSDHSPSPPDLKL 376
Query: 352 LGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIA 411
L + +F G++ +Q L W G G+ + E+ S AK+ L KG IA
Sbjct: 377 LEEGNFLRAWGGISSLQFVLPATWTAGRAYGL-TLEQLARWWSERPAKLAGL-DSKGAIA 434
Query: 412 EGSDADIVVW 421
G DADIVVW
Sbjct: 435 PGKDADIVVW 444
>gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 66
Score = 75.4 bits (186), Expect = 5e-17
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 39 IYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTK 98
I IE+G I +G + + VIDA G YV+PG ID H H E + G
Sbjct: 1 ILIEDGKIAAIGGDDLPDAEAEVIDAEGKYVLPGLIDMHVHLGEE----PGRETLETGAA 56
Query: 99 AAVAGGTTTI 108
AA+AGG TT+
Sbjct: 57 AALAGGVTTV 66
>gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional.
Length = 380
Score = 76.4 bits (189), Expect = 5e-15
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 21 LLIKNGKVVNADKISD--LDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
LL++ G+V++ D +DI IE+G I + ++ +VID +G YV PG ID H
Sbjct: 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHV 60
Query: 79 H-FELELMGATSVDDFYHGTKAAVAGGTTTIID 110
H + G+T + V G TT++D
Sbjct: 61 HVYP----GSTP--YGDEPDEVGVRSGVTTVVD 87
Score = 34.1 bits (79), Expect = 0.21
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 391 AVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG 450
AVT NAA L P+ G + GSDAD+ ++ K EG G
Sbjct: 304 AVTK-NAADALRL-PELGRLQVGSDADLTLFTLKDGP----------FTLTDSEGDSLIG 351
Query: 451 ----VPEYVIVGGRV 461
P + GG+V
Sbjct: 352 ERLLTPLATVRGGKV 366
>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 70.0 bits (171), Expect = 4e-13
Identities = 65/360 (18%), Positives = 102/360 (28%), Gaps = 58/360 (16%)
Query: 68 YVIPGGIDPHTHFE-LELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLI--KTY 124
V+PG ID H H E L G S + G KA + GTTT++D S+ K
Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDT-PTSANTSIPLRKEI 59
Query: 125 ESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGE 184
A + L G AEL E + + A L
Sbjct: 60 MEGLAAAPKLEPNVELLLKGSV-------GGRAELGEVVIDGAGEEAKAGADLI------ 106
Query: 185 LYDAFSAIKNLGAIAMVHAENGEIID-KNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRA 243
I++ G A + + + G+K E EE E +
Sbjct: 107 -----KVIEDGGKTAKAIDGVLPALAPHDPPTVSHEGLKN-EVELAEETEEAEKLGLLVH 160
Query: 244 CTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCT-LYGETLAAAVGTHANQIPC 302
A + G + HC L E + + C
Sbjct: 161 IHAAEASGEVNAI------LGGVDLL----------AHCLHLDDEAIELLKEAGSGIAHC 204
Query: 303 TWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPN 362
+++ + L + A +D + +
Sbjct: 205 PLSNESILHRGGRFSLMSGDAQGIGELGSGGARLARLADK---GGVVGLGTDGAGLNGK- 260
Query: 363 GVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
+ + P LSP + + + + N AK L + G I G DAD+VV +
Sbjct: 261 -------------DFYLDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVVVD 307
>gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional.
Length = 392
Score = 70.6 bits (173), Expect = 5e-13
Identities = 91/420 (21%), Positives = 147/420 (35%), Gaps = 103/420 (24%)
Query: 66 GSYVIPGGIDPHTHFE-LELMGATSVDDFYHGTKAAVAGGTTTIIDF--ALPRKGESLIK 122
G+ ++PG ID H H L+L + +D GT A GG T + D +P +
Sbjct: 42 GTLILPGAIDLHVHLRGLKL---SYKEDVASGTSEAAYGGVTLVADMPNTIPP-----LN 93
Query: 123 TYESWRQKADE---KVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYM 179
T E+ +K E DY ++ G+T + +++ +L + +K F
Sbjct: 94 TPEAITEKLAELEYYSRVDYFVYSGVT----KDPEKVDKL----PIAGYKIFP------- 138
Query: 180 LSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEA 239
D E + F + + ++H E + +K L R E A
Sbjct: 139 -EDLEREETFRVLLKSRKLKILHPE------------VPLALKSNRK--LRRNCWYEIAA 183
Query: 240 VTRACTIAN----QVDCPLYVVHIMSKAAG---DAMAYKRKELMKKGKHCTLYGETLAAA 292
+ N P V ++K G D + H + GE
Sbjct: 184 LYYVKDYQNVHITHASNPRTVR--LAKELGFTVDITPH----------HLLVNGEK---- 227
Query: 293 VGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKEL 352
C ++PP+R D LL L+E + SD+ + +K
Sbjct: 228 --------DCLTK------VNPPIR-DINERLWLLQALSE--VDAIASDHAPHSSFEK-- 268
Query: 353 GKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAE 412
+ P G+ + I+ V GILS ++ V + STN A+I + G I E
Sbjct: 269 -LQPYEVCPPGIAALSFTPPFIYTL-VSKGILSIDRAVELISTNPARILGI--PYGEIKE 324
Query: 413 GSDADIVV-----WNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGN 467
G A+ V W Y K + +T + FE IV G++ EG
Sbjct: 325 GYRANFTVIQFEDWRYSTKYSKVIETPL-----DGFELKAS---VYATIVQGKLAYLEGE 376
>gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the
atrazine degradation pathway and related hydrolases.
Atrazine, a chlorinated herbizide, can be catabolized by
a variety of different bacteria. The first three steps
of the atrazine dehalogenation pathway are catalyzed by
atrazine chlorohydrolase (AtzA), hydroxyatrazine
ethylaminohydrolase (AtzB), and N-isopropylammelide
N-isopropylaminohydrolase (AtzC). All three enzymes
belong to the superfamily of metal dependent hydrolases.
AtzA and AtzB, beside other related enzymes are
represented in this CD.
Length = 411
Score = 67.2 bits (165), Expect = 7e-12
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 30/120 (25%)
Query: 21 LLIKNGKVV---NADKISDLDIYIENGVIQQLGRNLIVPG--GVRVIDAAGSYVIPGGID 75
+LI+NG +V + D D+ +E+G I +G L +P VIDA G V+PG ++
Sbjct: 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVN 60
Query: 76 PHTHF----------ELELM-----------GATSVDDFYHGTKAAVA----GGTTTIID 110
HTH +L LM + +D Y G A+A GTTT D
Sbjct: 61 THTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFAD 120
Score = 42.6 bits (101), Expect = 4e-04
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
P L E+ + + + AK L + G + G AD+++ + + +
Sbjct: 329 PTALPAEEALEMATIGGAKALGL-DEIGSLEVGKKADLILIDLDGPHLLPV--------H 379
Query: 441 NIFEGLVCHGVPEYV---IVGGRVCVDEGNL 468
+ LV V IV GRV +++G L
Sbjct: 380 DPISHLVYSANGGDVDTVIVNGRVVMEDGEL 410
>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 406
Score = 65.1 bits (159), Expect = 3e-11
Identities = 38/126 (30%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 19 NRLLIKNGKV-VNADKISDLDIYIENGVIQQLGRNLI-VPGGVRVIDAAGSYVIPGGIDP 76
L G+ I D + IE+G I +G I +P G VIDA G V PG ID
Sbjct: 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDA 69
Query: 77 HTH----------FELELMGAT---------SVDDFYHGTKAAVAGGTTTIIDFALPRKG 117
HTH FEL GA+ + G A GG L R G
Sbjct: 70 HTHLGFGGSRGGEFELREAGASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAG 129
Query: 118 ESLIKT 123
+ + T
Sbjct: 130 SAGVTT 135
Score = 40.4 bits (95), Expect = 0.002
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 384 LSP-EKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
++P E A T NAAK L K G + G DAD+VVW+
Sbjct: 336 MTPEEALKAATI-NAAKALGLADKVGSLEPGKDADLVVWD 374
>gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 304
Score = 64.1 bits (155), Expect = 4e-11
Identities = 72/360 (20%), Positives = 107/360 (29%), Gaps = 59/360 (16%)
Query: 63 DAAGSYVIPGGIDPHTH-FELELMGATS-VDDFYHGTKAAVAGGTTTIIDFALPRKGESL 120
DA G V+PG +D H H L+ AA+AG T + E L
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 121 IKTYESWRQKADEKVCCDYALHVGITWWSDQVQ-QEMAELCEKHGVNSFKTFMAYKGLYM 179
+ L + + + EL E GV +
Sbjct: 61 TR---------LLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASV------- 104
Query: 180 LSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEA 239
L L K G I +V ++ D +K L A GH++ AE
Sbjct: 105 LDGPGLEALLREAKKAGLILLVGHAPADLGDGAVEKGLDALFLLALGHEV-------AED 157
Query: 240 VTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQ 299
+ A + L+V+ + D + G + E L
Sbjct: 158 LHLAEILDPGAGLGLHVIAAAA----DLLLEGLVAAHAGG-LAVVPLELLLRDAAAAGVA 212
Query: 300 IPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTH 359
+ PPLR E L LL GSD H
Sbjct: 213 F----------KVLPPLRLRERDREALRELLAAGVPVALGSD-----------------H 245
Query: 360 IPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIV 419
P+ G D L + G L+PE+ + + + N A++ L G + G AD+V
Sbjct: 246 APDSPAGPGDLLEAALFLAALAG-LTPEEALRLATLNPARLLGLGDDLGRLEVGKRADLV 304
>gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and
metabolism].
Length = 584
Score = 60.4 bits (147), Expect = 2e-09
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 21 LLIKNGKVVNA--DKISDLDIYIENGVIQQLGRNL-IVPGGVRVIDAAGSYVIPGGIDPH 77
L++KNG++V+ +I DI I G I +G VIDAAG Y++PG ID H
Sbjct: 26 LVLKNGRIVDVVTGEIYKGDIAIAGGRI--VGVIGEYRAEATEVIDAAGRYIVPGFIDAH 83
Query: 78 THFELELMGATSVDDFYHGTKAAVAGGTTTII 109
H E ++ + +A + GTTT++
Sbjct: 84 LHIESSMLTPSEFA------RAVLPHGTTTVV 109
Score = 32.7 bits (75), Expect = 0.60
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVV 420
+ P + + N A+ + L G+IA G AD+V+
Sbjct: 303 VDPLDAYQMATINPAEHYGL-DDLGLIAPGRRADLVI 338
>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall
recycling.
Length = 374
Score = 59.1 bits (144), Expect = 2e-09
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
L+IKN +++ + D + +E+G I +G + +ID G Y++PG ID H H
Sbjct: 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIH 59
Score = 45.6 bits (109), Expect = 5e-05
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
G E+ V + S N AK+ L +KG + G DAD+VV +
Sbjct: 322 GGCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLD 362
>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics.
Length = 415
Score = 58.8 bits (143), Expect = 3e-09
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 21 LLIKNGKVV----NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDP 76
L+I+NG VV +D + I +G I +G L VIDAAG V PG ID
Sbjct: 2 LVIRNGTVVDGTGAPPFTAD--VGIRDGRIAAIGPILSTSA-REVIDAAGLVVAPGFIDV 58
Query: 77 HTHFELELM 85
HTH++ ++
Sbjct: 59 HTHYDGQVF 67
Score = 38.8 bits (91), Expect = 0.007
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNY---KAKRTISAKTHAHAC 438
+LS E+ V + A++F L +G IA G ADIVV++ + T +
Sbjct: 333 KLLSLEEAVRKMTGLPARVFGLA-DRGRIAPGYRADIVVFDPDTLADRATFTRPNQPAE- 390
Query: 439 DYNIFEGLVCHGVPEYVIVGGRVCVDEG 466
G+ E V+V G V +G
Sbjct: 391 -----------GI-EAVLVNGVPVVRDG 406
>gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional.
Length = 424
Score = 56.7 bits (137), Expect = 2e-08
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 21 LLIKNGKVVNAD--KISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
+LIKNG V+ + K+ D+ IE I ++ RN+ P VIDA+GS V PG I+ HT
Sbjct: 3 ILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKPAD-TVIDASGSVVSPGFINAHT 61
Query: 79 H 79
H
Sbjct: 62 H 62
Score = 30.9 bits (70), Expect = 2.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYK 424
P I E + + N AK L K GVI EG ADI V ++
Sbjct: 324 PTIADAETVFRMATQNGAKALGL--KAGVIKEGYLADIAVIDFN 365
>gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent
hydrolases [Nucleotide transport and metabolism /
General function prediction only].
Length = 421
Score = 56.7 bits (137), Expect = 2e-08
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 29/123 (23%)
Query: 19 NRLLIKNGKVVNAD---KISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID 75
LLI+ ++ D +I D D+ IE+G I +G N P VIDA G V+PG ++
Sbjct: 2 TMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFVN 61
Query: 76 PHTHFELELMGA----------------------TSVDDFYHGTKAA----VAGGTTTII 109
HTH + L+ + +D Y A + GTTT
Sbjct: 62 AHTHLDQTLLRGLADDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTAR 121
Query: 110 DFA 112
Sbjct: 122 THV 124
Score = 32.4 bits (74), Expect = 0.69
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 369 DRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRT 428
D L + G++ L E T AK L G + G AD+VV + A
Sbjct: 323 DLLQKL-AGGLLAAQLPGEALDMAT-LGGAKALGL-DDIGSLEVGKKADLVVLDASAPHL 379
Query: 429 ISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEG 466
+ + G V+V GR+ +++G
Sbjct: 380 APLRPVSRL--VFAAGGKDVD----RVLVDGRLVMEDG 411
>gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional.
Length = 445
Score = 56.5 bits (137), Expect = 2e-08
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 28/119 (23%)
Query: 20 RLLIKNGKVVNADK---ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDP 76
+LIKN +V + I D D+ IE+ I +G L + IDA G VIPG I
Sbjct: 2 TILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQG 61
Query: 77 HTHF----------ELELM-----------GATSVDDFYH----GTKAAVAGGTTTIID 110
H H +LEL+ A + Y+ G + GTTTI+D
Sbjct: 62 HIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVD 120
>gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional.
Length = 449
Score = 56.5 bits (137), Expect = 2e-08
Identities = 34/121 (28%), Positives = 46/121 (38%), Gaps = 30/121 (24%)
Query: 19 NRLLIKNGKVVNAD-KISDL---DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGI 74
R LI+ G V+ D I DL DI IE I + + I V+DA G V+PG +
Sbjct: 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPS-IEAPDAEVVDARGMIVMPGLV 60
Query: 75 DPHTH-------------------FEL--ELMGATSVDDFYHGTKA----AVAGGTTTII 109
D H H E+ L +D Y A+ G TT++
Sbjct: 61 DTHRHTWQSVLRGIGADWTLQTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLL 120
Query: 110 D 110
D
Sbjct: 121 D 121
>gnl|CDD|132622 TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915.
Members of this family of relatively uncommon proteins
are found in both Gram-positive (e.g. Enterococcus
faecalis) and Gram-negative (e.g. Aeromonas hydrophila)
bacteria, as part of a cluster of conserved proteins.
These proteins resemble aminohydrolases (see pfam01979),
including dihydroorotases. The function is unknown
[Hypothetical proteins, Conserved].
Length = 365
Score = 55.9 bits (135), Expect = 2e-08
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 20 RLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGS-YVIPGGIDPHT 78
LLIKNG+ VN + DI IE+G I +G + ID G YV G ID HT
Sbjct: 2 DLLIKNGRTVNGTPV---DIAIEDGKIAAVGTTITGSAKQ-TIDLEGETYVSAGWIDDHT 57
Query: 79 HFELELMGATSVDDFYHG--TKAAVAGGTTTIID 110
H Y+ + V G TT++D
Sbjct: 58 H-------CFPKSALYYDEPDEIGVKTGVTTVVD 84
Score = 41.6 bits (98), Expect = 0.001
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 359 HIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADI 418
+I N +NG L+ + K + G E VT NAA+I L +KG + EG DAD+
Sbjct: 269 YIRNRINGPVYSLATVMSKFLALGYSLEEVIEKVT-KNAAEILKL-TQKGRLQEGYDADL 326
Query: 419 VVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
++ KA+ + D I E + P VI+GG
Sbjct: 327 TIFTVKAEPKKLTDSEG---DSRIAEEQI---KPLAVIIGGEY 363
>gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases,
subgroup B is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 338
Score = 55.4 bits (134), Expect = 3e-08
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Query: 38 DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGT 97
D+ IENG I +G L P +++DA G YV PG ID H H + GT
Sbjct: 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVHV------------YQGGT 48
Query: 98 -------KAAVAGGTTTIID 110
V G TT++D
Sbjct: 49 RYGDRPDMIGVKSGVTTVVD 68
Score = 35.8 bits (83), Expect = 0.057
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 359 HIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADI 418
H N NG L+ K + G + E+ + + N A++ L + G +A G DAD+
Sbjct: 253 HGRNRTNGPVYALATTLSKLLALG-MPLEEVIEAVTANPARMLGL-AEIGTLAVGYDADL 310
Query: 419 VVWNYKAKRTI 429
V++ K R
Sbjct: 311 TVFDLKDGRVE 321
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 53.1 bits (127), Expect = 1e-07
Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 24/174 (13%)
Query: 74 IDPHTHFELELMGATSV----------------DDFYHGTKAAVAGGTTTIIDFALPRKG 117
ID H H + + T + +D +A +AGG TT++D
Sbjct: 2 IDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPP 61
Query: 118 ESLIKTYESWRQKADEKVCCDYALHVGI----TWWSDQVQQEMAELCEK---HGVNSFKT 170
+ E+ + A L +GI + + + EL + G K
Sbjct: 62 TTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKL 121
Query: 171 FMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGP 224
Y LSD L + LG ++HA + + L+A G
Sbjct: 122 AGPYTA-TGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRLGG 174
>gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated.
Length = 406
Score = 53.3 bits (129), Expect = 2e-07
Identities = 36/133 (27%), Positives = 47/133 (35%), Gaps = 45/133 (33%)
Query: 21 LLIKNGKVV--------NADKISDLDIYIENGVIQQLGRNLIVPGGV--RVIDAAGSYVI 70
LL N ++ I D I IE+G I +G +P VIDA G V
Sbjct: 5 LLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVT 64
Query: 71 PGGIDPHTH----------FELELMGAT---------------------SVDDFYHGTK- 98
PG ID HTH FEL L G + S ++ +
Sbjct: 65 PGLIDCHTHLVFGGNRANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALP 124
Query: 99 ---AAVAGGTTTI 108
A +A G TT+
Sbjct: 125 RLDALLAEGVTTV 137
Score = 40.9 bits (97), Expect = 0.001
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIF 443
L+PE+ +A + NAA+ G + G AD+V+W+ A + A Y+
Sbjct: 340 LTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWD--------APSPAELP-YHF- 389
Query: 444 EGLVCHGV--PEYVIVGGRVCVD 464
GV E V+ G V VD
Sbjct: 390 ------GVNPVETVVKNGEVVVD 406
>gnl|CDD|130246 TIGR01178, ade, adenine deaminase. The family described by this
model includes an experimentally characterized adenine
deaminase of Bacillus subtilis. It also include a member
from Methanobacterium thermoautotrophicum, in which
adenine deaminase activity has been detected [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 552
Score = 53.2 bits (128), Expect = 2e-07
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Query: 21 LLIKNGK---VVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPH 77
++IKN K V N + I DI I NG I +G+ GV+VIDA G Y +PG ID H
Sbjct: 2 IVIKNAKIIDVYNGEIIPG-DIAIANGHIAGVGKY----NGVKVIDALGEYAVPGFIDAH 56
Query: 78 THFELELMGATSVDDFYHGTKAAVAGGTTTII 109
H E ++ + +F K + G TT++
Sbjct: 57 IHIESSML---TPSEF---AKLVLPHGVTTVV 82
>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional.
Length = 388
Score = 52.9 bits (128), Expect = 2e-07
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGG---VRVIDAAGSYVIPGGIDPH 77
L+KN V + + DI I G I + N+ +P + VIDA+G ++PG ID H
Sbjct: 3 TLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQH 62
Query: 78 THF 80
H
Sbjct: 63 VHI 65
Score = 47.9 bits (115), Expect = 1e-05
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 26/92 (28%)
Query: 379 VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHAC 438
V L E + ++N A+ L K G I G DAD++V +
Sbjct: 318 VKDEGLPLEDALKPLTSNVARFLKLNGK-GEILPGKDADLLVLDD--------------- 361
Query: 439 DYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRV 470
D I E VI G++ V +G V
Sbjct: 362 DLRI----------EQVIAKGKLMVKDGKALV 383
>gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function
prediction only].
Length = 386
Score = 51.7 bits (124), Expect = 5e-07
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 18 QNRLLIKNGKVVNADKISD--LDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID 75
Q +L+ G++++ + D +I I NG I + P ++IDA G V PG ID
Sbjct: 3 QFDILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLID 61
Query: 76 PHTHFELELMGATSVDDFYHGTKAAVAGGTTTIID 110
H H G T G TT++D
Sbjct: 62 LHVHV---YYGGTEGGV--RPDMYGAPNGVTTVVD 91
Score = 30.2 bits (68), Expect = 3.0
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 359 HIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADI 418
H +NG L+ I K + G+ + AVT N A + L + G +A G+ ADI
Sbjct: 276 HTITKLNGPVYDLAWIMSKLLALGMPLTDVINAVTH-NPAVLIGL-AEIGTLAPGAFADI 333
Query: 419 VVWNYKAKRTISAKTH 434
V+ K + H
Sbjct: 334 TVFKLKNRHVEFVDAH 349
>gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase. This enzyme catalyzes the
third step in histidine degradation [Energy metabolism,
Amino acids and amines].
Length = 377
Score = 51.6 bits (124), Expect = 5e-07
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 34 ISDLDIYIENGVIQQLGRNLIVPG--GVRVIDAAGSYVIPGGIDPHTH----------FE 81
I D I I G I +G+ +PG +ID G V PG +DPHTH FE
Sbjct: 1 IEDAVILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFE 60
Query: 82 LELMGATSVDDFYHG------TKAAVAGGTTTIIDFALPR 115
++L GA+ ++ G +A A ++ AL R
Sbjct: 61 MKLQGASYLEILAQGGGILSTVRATRAASEEELLKLALFR 100
Score = 37.8 bits (88), Expect = 0.013
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIF 443
++PE+ + + NAA L ++G + G DAD+V+ + + I + I
Sbjct: 314 MTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEIPYHYGVNHVHAVIK 373
Query: 444 EG 445
G
Sbjct: 374 NG 375
>gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM;
Provisional.
Length = 383
Score = 51.3 bits (124), Expect = 7e-07
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRV---IDAAGSYVIPGGID 75
+++ N ++V D++ D + IE+G I I PG + IDA G Y++PG +D
Sbjct: 2 MEMILSNARLVLPDEVVDGSLLIEDGRIAA-----IDPGASALPGAIDAEGDYLLPGLVD 56
Query: 76 PHT-HFELELM 85
HT + E L
Sbjct: 57 LHTDNLEKHLA 67
>gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases,
subgroup C is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 359
Score = 50.4 bits (121), Expect = 1e-06
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 21/88 (23%)
Query: 43 NGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH---FELELMGATS---------- 89
+G I +G + P VIDA G +V PG ID H+H E + TS
Sbjct: 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVT 60
Query: 90 -----VDDFY---HGTKAAVAGGTTTII 109
+D K A AGG TT+
Sbjct: 61 PHVRAIDGINPDDEAFKRARAGGVTTVQ 88
Score = 36.9 bits (86), Expect = 0.022
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
LS E+ + + N AKI + + G + G DAD+VVWN
Sbjct: 300 LSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVWN 338
>gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional.
Length = 386
Score = 50.5 bits (121), Expect = 1e-06
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 14/176 (7%)
Query: 255 YVVHIMSKAAGDAMAYKRK-ELMKKGKHCTLYGETLAAAVGTH---ANQIPCTWHDQAAH 310
+K D +A R EL+ K K GE L V H + C + AA
Sbjct: 190 LAKFYKNKVLFDTLALPRSLELLDKFKS---EGEKLLKEVSIHHLILDDSACENFNTAAK 246
Query: 311 VLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDR 370
L+PPLR + LL L E + S + + ++K+L +F G++ + +
Sbjct: 247 -LNPPLR-SKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL---AFDEAAFGIDSICEY 301
Query: 371 LSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAK 426
S+ + V GI++ + TS N A+ L G I G +AD+V+++
Sbjct: 302 FSLCYTYLVKEGIITWSELSRFTSYNPAQFLGL--NSGEIEVGKEADLVLFDPNES 355
Score = 30.8 bits (70), Expect = 2.3
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 39 IYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID----PHTHFELELMGATSVDDFY 94
I I++G I ++G +L G ++DA G ++P +D L S +
Sbjct: 1 IRIKDGKITEIGSDL---KGEEILDAKGKTLLPALVDLNVSLK---NDSL----SSKNLK 50
Query: 95 HGTKAAVAGGTTTII 109
+ GG +I+
Sbjct: 51 SLENECLKGGVGSIV 65
>gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional
enzyme of carbamoylphosphate synthetase-aspartate
transcarbamoylase-dihydroorotase, which catalyzes the
first three steps of de novo pyrimidine nucleotide
biosynthesis. Dihydroorotase (DHOase) catalyzes the
third step, the reversible interconversion of carbamoyl
aspartate to dihydroorotate.
Length = 344
Score = 49.4 bits (118), Expect = 3e-06
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 70 IPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLI--KTYESW 127
+PG ID H H L GAT +DF GTKAA+AGG T + A+P S++ + +
Sbjct: 5 LPGLIDVHVH--LREPGATHKEDFASGTKAALAGGFTMVR--AMPNTNPSIVDVASLKLV 60
Query: 128 RQKADEKVCCDYALHVGIT 146
+ A K CDYA +G T
Sbjct: 61 QSLAQAKARCDYAFSIGAT 79
Score = 35.9 bits (83), Expect = 0.052
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 360 IPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIV 419
P G GV+ L ++ V G L+ E V TN +IFNL P+ E D D
Sbjct: 238 PPPGFPGVETSLPLLLT-AVHEGRLTIEDIVDRLHTNPKRIFNLPPQSDTYVE-VDLD-E 294
Query: 420 VWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQG 475
W TI + FEG G + V++ G +G + G G
Sbjct: 295 EW------TIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAFIDGEIVAPPGFG 344
>gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil
and ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi, but
not mammalian cells. The bacterial enzymes, but not the
fungal enzymes, are related to the adenosine deaminases
(ADA). The bacterial enzymes are iron dependent and
hexameric.
Length = 398
Score = 49.6 bits (119), Expect = 3e-06
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 22 LIKNGKVVNADKISDL-DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L++N ++ AD + L DI IE+G I +G L VP +DA G V+P +DPH H
Sbjct: 1 LLRNARL--ADGGTALVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIH- 57
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTT--IIDFALPRKGESLIKTYE 125
+ T F G +GGT II + + + E
Sbjct: 58 ----LDKT----FTGGRWPNNSGGTLLEAIIAWEERKLLLTAEDVKE 96
>gnl|CDD|238621 cd01296, Imidazolone-5PH,
Imidazolonepropionase/imidazolone-5-propionate hydrolase
(Imidazolone-5PH) catalyzes the third step in the
histidine degradation pathway, the hydrolysis of
(S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
N-formimidoyl-L-glutamate. In bacteria, the enzyme is
part of histidine utilization (hut) operon.
Length = 371
Score = 49.2 bits (118), Expect = 3e-06
Identities = 27/109 (24%), Positives = 35/109 (32%), Gaps = 39/109 (35%)
Query: 39 IYIENGVIQQLGR----NLIVPGGVRVIDAAGSYVIPGGIDPHTH----------FELEL 84
I I +G I +G P IDA G V PG +D HTH F L
Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARL 60
Query: 85 MGAT---------------------SVDDFYHGTK----AAVAGGTTTI 108
GA+ S D+ + + GTTT+
Sbjct: 61 AGASYEEILAAGGGILSTVRATRAASEDELFASALRRLARMLRHGTTTV 109
Score = 40.7 bits (96), Expect = 0.002
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIF 443
++PE+ + + NAA L G + G AD+V+ + + ++ + + +Y I
Sbjct: 310 MTPEEALTAATINAAAALGLGETVGSLEVGKQADLVILDAPSYEHLAYRFGVNLVEYVIK 369
Query: 444 EG 445
G
Sbjct: 370 NG 371
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 48.9 bits (117), Expect = 5e-06
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 21 LLIKNGKVV----NADKISDLDIYIENGVIQQLGR---NLIVPGGVRVIDAAGSYVIPGG 73
+L+ N +++ D+I + IE+GVI G+ N P G ++D AG V PG
Sbjct: 5 ILLANARIIDPSRGLDEIGT--VLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGL 62
Query: 74 IDPHTHF-ELELMGATSVDDFYHGTKAAVAGGTTTII 109
+D E GA + ++AA AGG T+II
Sbjct: 63 VDARVFVGEP---GAEHRETIASASRAAAAGGVTSII 96
>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional.
Length = 430
Score = 47.8 bits (114), Expect = 9e-06
Identities = 47/203 (23%), Positives = 75/203 (36%), Gaps = 60/203 (29%)
Query: 21 LLIKNGKVV--NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
++IKN V+ +A + + IE+G I ++ VIDA GS V+PG ++ HT
Sbjct: 4 IIIKNAYVLTMDAGDLKKGSVVIEDGTITEVS-ESTPGDADTVIDAKGSVVMPGLVNTHT 62
Query: 79 HFELELMGATSVD---------------------DFYHGTKAA----VAGGTTT------ 107
H + L + D D Y G+ A + GTT+
Sbjct: 63 HAAMTLFRGYADDLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYF 122
Query: 108 ---------------------IIDFALPRKGESLIKT----YESWRQKADEKVCCDYALH 142
+ID KGE+ +K + W AD ++ Y H
Sbjct: 123 YMDEVAKAVEESGLRAALSYGMIDLGDDEKGEAELKEGKRFVKEWHGAADGRIKVMYGPH 182
Query: 143 VGITWWSDQVQQEMAELCEKHGV 165
T S++ ++ +L K GV
Sbjct: 183 APYT-CSEEFLSKVKKLANKDGV 204
>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy
production and conversion].
Length = 575
Score = 47.9 bits (114), Expect = 1e-05
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 11/65 (16%)
Query: 21 LLIKNGKV------VNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGI 74
+LIKNG V +N +K +DI +++G I + + + +VIDA+G V+PGG+
Sbjct: 5 ILIKNGIVYDPLNGINGEK---MDICVKDGKIVE--ESEVSESKAKVIDASGKLVMPGGV 59
Query: 75 DPHTH 79
D H+H
Sbjct: 60 DSHSH 64
Score = 37.1 bits (86), Expect = 0.029
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 376 EKGVVPGI---LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAK 432
++ + GI L+ + +T N AK+ L +KG + G+DADI +++ ++ +
Sbjct: 427 DRSALAGIDRELTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNPEQVDPSN 486
Query: 433 THAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNL 468
+ F Y + GG + V +G +
Sbjct: 487 DYEKV--EKAFRK------AAYTLKGGEIVVKDGEI 514
>gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase;
Reviewed.
Length = 451
Score = 47.2 bits (113), Expect = 2e-05
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 20 RLLIKNGKVV---NAD--KISDLDIYIENGVIQQLGRNLIVPG-GVRVIDAAGSYVIPGG 73
L IKN + +A +I+D + +E G I ++G +P V DA G V PG
Sbjct: 2 TLWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGL 61
Query: 74 IDPHTHF 80
++ H HF
Sbjct: 62 VNTHHHF 68
>gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated.
Length = 509
Score = 47.0 bits (112), Expect = 2e-05
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 20 RLLIKNGKVVNADKISDLD----IYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID 75
L+I+NG+VV D + LD + I+ G I +G I G R IDA G V PG ID
Sbjct: 20 DLVIRNGRVV--DPETGLDAVRDVGIKGGKIAAVGTAAI--EGDRTIDATGLVVAPGFID 75
Query: 76 PHTH 79
H H
Sbjct: 76 LHAH 79
Score = 38.5 bits (90), Expect = 0.009
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 405 PKKGVIAEGSDADIVVWNYKAKRTISAK-THAHACDYNIFEGLVCHGVPEYVIVGGRVCV 463
+KG + G+DADIVV++ + TI+ + T + GV +V+V G V
Sbjct: 441 RRKGRLQAGADADIVVFDPE---TITDRATFEDPNRPS-------EGVR-HVLVNGVPVV 489
Query: 464 DEGNL 468
G L
Sbjct: 490 SNGEL 494
>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases.
YtcJ is a Bacillus subtilis ORF of unknown function.
The Arabidopsis homolog LAF3 has been identified as a
factor required for photochrome A signalling.
Length = 479
Score = 46.1 bits (110), Expect = 4e-05
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 38 DIYIENGVIQQLGRN----LIVPGGVRVIDAAGSYVIPGGIDPHTHF--------ELELM 85
+ + +G I +G + + VID G V+PG ID H+H L+L
Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLLGGLSLLWLDLS 60
Query: 86 GATSVDDF 93
G TS ++
Sbjct: 61 GVTSKEEA 68
>gnl|CDD|234114 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase
subunit A. Members of this largely archaeal protein
family are subunit A of the formylmethanofuran
dehydrogenase. Nomenclature in some bacteria may
reflect inclusion of the formyltransferase described by
TIGR03119 as part of the complex, and therefore call
this protein formyltransferase/hydrolase complex Fhc
subunit A. Note that this model does not distinguish
tungsten (FwdA) from molybdenum-containing (FmdA) forms
of this enzyme; a single gene from this family is
expressed constitutively in Methanobacterium
thermoautotrophicum, which has both tungsten and
molybdenum forms and may work interchangeably.
Length = 556
Score = 46.2 bits (110), Expect = 4e-05
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 11/65 (16%)
Query: 21 LLIKNGKV------VNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGI 74
+LIKNG V ++ + +DI+I +G I + P +VIDA+G V+ GG+
Sbjct: 2 ILIKNGTVYDPANGIDGEV---MDIFIRDGKIVEPVSGGTKP--AKVIDASGKLVMAGGV 56
Query: 75 DPHTH 79
D HTH
Sbjct: 57 DSHTH 61
Score = 30.0 bits (68), Expect = 4.2
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 392 VTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGV 451
+T AK+ L +G + G+DADI V++ + DY E
Sbjct: 438 MTRAGPAKLLGL-TDRGHLGVGADADIAVYDINPDDVDT--------DYADVEKAF--ST 486
Query: 452 PEYVIVGGRVCVDEG 466
YV G + V +G
Sbjct: 487 ALYVFKDGEIVVKDG 501
>gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase;
Validated.
Length = 442
Score = 45.7 bits (109), Expect = 6e-05
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 21 LLIKNGKVVNADK----ISDLDIYIENGVIQQLGRNLIVPG---GVRVIDAAGSYVIPGG 73
LLI NG + D I D I IE VI ++G + IDA G ++PG
Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGL 61
Query: 74 IDPHTHF 80
I+ H H
Sbjct: 62 INSHNHI 68
>gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional.
Length = 391
Score = 44.9 bits (107), Expect = 9e-05
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
LL +N + +DI I +G I +G L P G V D G+ +PG +D H
Sbjct: 2 TDLLFRNVRPAGGAA---VDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHI 58
Query: 79 HF 80
H
Sbjct: 59 HL 60
>gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase
[Carbohydrate transport and metabolism].
Length = 380
Score = 44.6 bits (106), Expect = 1e-04
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 22 LIKNGKVVNA-DKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
+KNG++ + + IE+G I+ + + P +ID G+ ++PG ID H H
Sbjct: 3 ALKNGRIFTGHGVLDGGAVVIEDGKIEAVVPAEL-PADAEIIDLKGALLVPGFIDLHIH 60
Score = 41.1 bits (97), Expect = 0.001
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
G +S + V + S N AK L + G I G DAD+VV +
Sbjct: 323 GGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLD 363
>gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 579
Score = 44.6 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 21 LLIKNGKVVNADKISDL--DIYIENGVIQQLGRNLIV-PGGVRVIDAAGSYVIPGGIDPH 77
++I++G + + D+ I +GVI + + + G +DAAG V PG ID H
Sbjct: 8 VVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEVDAAGRIVAPGFIDVH 67
Query: 78 THFELELMGATSVDDFYHGTKAAVAGGTTTII 109
TH++ E++ G + +V G TT++
Sbjct: 68 THYDAEVLLDP-------GLRPSVRHGVTTVV 92
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 43.9 bits (104), Expect = 2e-04
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 21 LLIKNGKV---VNADKISDLDIYIENGVIQQLGR----NLIVPGGVRVIDAAGSYVIPGG 73
L++ NG++ A ++ + I++G I +G + VID G +V+PG
Sbjct: 7 LILHNGRIYTMDEARPTAE-AVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGF 65
Query: 74 IDPHTH--------FELELMGATSVDD 92
+D H H EL L G S+DD
Sbjct: 66 VDAHLHLISGGLSLLELNLDGVRSLDD 92
>gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine
to form hypoxanthine. This reaction is part of one of
the adenine salvage pathways, as well as the degradation
pathway. It is important for adenine utilization as a
purine, as well as a nitrogen source in bacteria and
archea.
Length = 422
Score = 43.8 bits (104), Expect = 2e-04
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 63 DAAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTII 109
DA G Y++PG ID H H E + +F KA + GTTT+I
Sbjct: 1 DAEGKYIVPGFIDAHLHIE---SSMLTPSEF---AKAVLPHGTTTVI 41
Score = 32.2 bits (74), Expect = 0.89
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVV 420
+ PE + + + N A+ + L+ G IA G ADIV+
Sbjct: 235 IPPEDAIQMATINPAECYGLH-DLGAIAPGRIADIVI 270
>gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase
hydrolyzes the beta-L-isoaspartyl linkages in
dipeptides, as part of the degradative pathway to
eliminate proteins with beta-L-isoaspartyl peptide
bonds, bonds whereby the beta-group of an aspartate
forms the peptide link with the amino group of the
following amino acid. Formation of this bond is a
spontaneous nonenzymatic reaction in nature and can
profoundly effect the function of the protein.
Isoaspartyl dipeptidase is an octameric enzyme that
contains a binuclear zinc center in the active site of
each subunit and shows a strong preference of
hydrolyzing Asp-Leu dipeptides.
Length = 387
Score = 43.5 bits (103), Expect = 2e-04
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPG--GVRVIDAAGSYVIPGGIDPHT 78
LIKN +V + + DI I G I + L +PG V V+D G ++PG ID H
Sbjct: 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHV 61
Query: 79 H 79
H
Sbjct: 62 H 62
Score = 40.8 bits (96), Expect = 0.002
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 363 GVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
GV V L + E V G + E + V ++N A+I L KKG I G DAD+V+ +
Sbjct: 302 GVGSVDTLLREVRE-AVKCGDIPLEVALRVITSNVARILKLR-KKGEIQPGFDADLVILD 359
>gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit
A; Methanogenic bacteria and archea derive the energy
for autotrophic growth from methanogenesis, the
reduction of CO2 with molecular hydrogen as the
electron donor. FMDH catalyzes the first step in
methanogenesis, the formyl-methanofuran synthesis. In
this step, CO2 is bound to methanofuran and
subsequently reduced to the formyl state with electrons
derived from hydrogen.
Length = 541
Score = 43.6 bits (103), Expect = 3e-04
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 12/63 (19%)
Query: 23 IKNGKV------VNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDP 76
IKNG V +N +K +DI+I +G I + + +VIDA+G V+ GG+D
Sbjct: 1 IKNGTVYDPLNGINGEK---MDIFIRDGKIVE---SSSGAKPAKVIDASGKVVMAGGVDM 54
Query: 77 HTH 79
H+H
Sbjct: 55 HSH 57
Score = 34.3 bits (79), Expect = 0.20
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 376 EKGVVPGI---LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAK 432
++ +PGI S + +T AK+ L KG + G+DADI +++
Sbjct: 416 DRSALPGIDREYSLYEIAIMTRAGPAKLLGL-SDKGHLGVGADADIAIYDDDPD---QVD 471
Query: 433 THAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNL 468
+ F YV+ G + V +G +
Sbjct: 472 PSDYEKVEKAFSR------AAYVLKDGEIVVKDGEV 501
>gnl|CDD|130852 TIGR01792, urease_alph, urease, alpha subunit. This model
describes the urease alpha subunit UreC (designated beta
or B chain, UreB in Helicobacter species). Accessory
proteins for incorporation of the nickel cofactor are
usually found in addition to the urease alpha, beta, and
gamma subunits. The trusted cutoff is set above the
scores of many reported fragments and of a putative
second urease alpha chain in Streptomyces coelicolor
[Central intermediary metabolism, Nitrogen metabolism].
Length = 567
Score = 43.2 bits (102), Expect = 3e-04
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 23/100 (23%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR----------NLIVPGGVRVIDAAGSYVI 70
L+I N +++ I DI I+NG I +G+ ++IV I G V
Sbjct: 68 LVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVT 127
Query: 71 PGGIDPHTHF-ELELMGATSVDDFYHGTKAAVAGGTTTII 109
GGID H H+ + + +AA+ G TT+I
Sbjct: 128 AGGIDTHVHYISPQQV------------QAALDNGITTLI 155
>gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated.
Length = 426
Score = 43.1 bits (102), Expect = 3e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+++N + D + +DI I G I + L IDAAG V P +DPH H
Sbjct: 4 LIVRNANL--PDGRTGIDIGIAGGRIAAVEPGLQAEAA-EEIDAAGRLVSPPFVDPHFH- 59
Query: 81 ELELMGAT 88
M AT
Sbjct: 60 ----MDAT 63
>gnl|CDD|238221 cd00375, Urease_alpha, Urease alpha-subunit; Urease is a
nickel-dependent metalloenzyme that catalyzes the
hydrolysis of urea to form ammonia and carbon dioxide.
Nickel-dependent ureases are found in bacteria, fungi
and plants. Their primary role is to allow the use of
external and internally generated urea as a nitrogen
source. The enzyme consists of 3 subunits, alpha, beta
and gamma, which can be fused and present on a single
protein chain and which in turn forms multimers, mainly
trimers. The large alpha subunit is the catalytic domain
containing an active site with a bi-nickel center
complexed by a carbamylated lysine. The beta and gamma
subunits play a role in subunit association to form the
higher order trimers.
Length = 567
Score = 42.7 bits (101), Expect = 5e-04
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 25/102 (24%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSY 68
L+I N +++ I DI I++G I +G+ N+IV VI G
Sbjct: 67 LVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKI 126
Query: 69 VIPGGIDPHTHF-ELELMGATSVDDFYHGTKAAVAGGTTTII 109
V GGID H HF + + + A+A G TT+I
Sbjct: 127 VTAGGIDTHVHFICPQQI------------EEALASGITTMI 156
>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase;
Provisional.
Length = 379
Score = 42.1 bits (99), Expect = 6e-04
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 18 QNRLLIKNGKVV---NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGI 74
+N +LI NG ++ + ++ I N +I V R+I A G V PG I
Sbjct: 2 KNDILITNGHIIDPARNINEIN-NLRIINDIIVDAD-KYPVASETRIIHADGCIVTPGLI 59
Query: 75 DPHTHFELELMGATSVDDFYHGTKAAVAG-------GTTTIID 110
D H H FY GT+ V G TT++D
Sbjct: 60 DYHAHV------------FYDGTEGGVRPDMYMPPNGVTTVVD 90
>gnl|CDD|184438 PRK13985, ureB, urease subunit beta; Provisional.
Length = 568
Score = 41.8 bits (98), Expect = 0.001
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSY 68
L+I N +++ I DI I++G I +G+ NL V + G
Sbjct: 67 LIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLI 126
Query: 69 VIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGT 105
V GGID H HF T+ F G + GGT
Sbjct: 127 VTAGGIDTHIHFISPQQIPTA---FASGVTTMIGGGT 160
>gnl|CDD|182201 PRK10027, PRK10027, cryptic adenine deaminase; Provisional.
Length = 588
Score = 41.4 bits (97), Expect = 0.001
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 28 VVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELMGA 87
++N +IS I I+ I +G ++ IDA G+ +PG ID H H E +M
Sbjct: 42 LINGGEISG-PIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTP 100
Query: 88 TSVDDFYHGTKAAVAGGTTTII 109
+ + A + G TT+I
Sbjct: 101 VTFE------TATLPRGLTTVI 116
>gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed.
Length = 569
Score = 41.2 bits (97), Expect = 0.001
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 23 IKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHFEL 82
I++G++V K + DI +GV +L +V G V A G PG ID H HF+
Sbjct: 91 IRDGRIVGIGKAGNPDIM--DGVDPRL----VVGPGTDVRPAEGLIATPGAIDVHVHFD- 143
Query: 83 ELMGATSVDDFYHGTKAAVAGGTTTII 109
S H A+A G TT++
Sbjct: 144 ------SAQLVDH----ALASGITTML 160
>gnl|CDD|237604 PRK14085, PRK14085, imidazolonepropionase; Provisional.
Length = 382
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 34 ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
+ D + +E G + +G P +DA G V+PG +D H+H
Sbjct: 26 LRDAAVVVEGGRVAWVGPAADAPAADERVDAGGRAVLPGFVDSHSH 71
>gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional.
Length = 418
Score = 40.6 bits (95), Expect = 0.002
Identities = 56/258 (21%), Positives = 94/258 (36%), Gaps = 78/258 (30%)
Query: 21 LLIKNGKVVNADKISDL---DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPH 77
+LIKN +V ++ ++ ++YIE I +G + +IDA G V+PG I+ H
Sbjct: 3 ILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGD--VNEEADYIIDATGKVVMPGLINTH 60
Query: 78 THFELE----LMGATSVDDFYH--------------------GTKAAVAGGTTTIIDF-- 111
H + L +++F G + G T +D
Sbjct: 61 AHVGMTASKGLFDDVDLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYY 120
Query: 112 ---ALPRKGESL-IKTYESW--------RQKAD---------------EKVCCDYALHVG 144
+ + E L I+ + SW QK D E V + G
Sbjct: 121 SEDIIAKAAEELGIRAFLSWAVLDEEITTQKGDPLNNAENFIREHRNEELVTPSIGVQ-G 179
Query: 145 ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYM-LSD--GELYDAFSAIKNLGAIAMV 201
I +D+ + E+ EK+ ++M LS+ E+YD +K G +
Sbjct: 180 IYVANDETYLKAKEIAEKYDTI----------MHMHLSETRKEVYD---HVKRTGERPVE 226
Query: 202 HAENGEIIDKNTQKLLAA 219
H E ++ KL+AA
Sbjct: 227 HLEKIGFLNS---KLIAA 241
Score = 30.6 bits (69), Expect = 2.2
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
I+ ++ + + NAAK L G I G AD+V+ + +A I + +
Sbjct: 322 ASIIKAQEILDFATINAAKALEL--NAGSIEVGKLADLVILDARAPNMIPTRKN------ 373
Query: 441 NIFEGLVCHGVP---EYVIVGGRVCVDEGNL 468
NI +V P ++VIV G++ + G L
Sbjct: 374 NIVSNIVYSLNPLNVDHVIVNGKILKENGRL 404
>gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional.
Length = 425
Score = 40.4 bits (95), Expect = 0.002
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 20 RLLIKNGKVV----NADKISDLDIYIENGVIQQLGRNLIVPGGV---RVIDAAGSYVIPG 72
++ IK G+++ D+ +DL Y+ G I +G+ P G + IDA+G V PG
Sbjct: 2 KIHIKGGRLIDPAAGTDRQADL--YVAAGKIAAIGQ---APAGFNADKTIDASGLIVCPG 56
Query: 73 GIDPHTHFE---LELMGATSVDDFYHGTKAAVAGGTTTII 109
+D E + AAVAGG T+++
Sbjct: 57 LVDLSARLREPGYEYKATLESE-----MAAAVAGGVTSLV 91
>gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM.
This family consists of proteins from in the PhnM
family. PhnM is a a protein associated with phosphonate
utilization in a number of bacterial species. In
Pseudomonas stutzeri WM88, a protein that is part of a
system for the oxidation of phosphites (another form of
reduced phosphorous compound) scores between trusted and
noise cutoffs [Energy metabolism, Other].
Length = 376
Score = 40.4 bits (95), Expect = 0.002
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 23 IKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRV---IDAAGSYVIPGGIDPHT- 78
+ N ++V D++ + + IE+G I I G V + ID G ++PG ID HT
Sbjct: 2 LSNARLVLEDEVVEGSVVIEDGAIAD-----IGEGPVALAEAIDGEGDLLLPGLIDLHTD 56
Query: 79 HFELELMGATSVD---DF---YHGTKAAVAGGTT 106
+ E + VD D H + A AG TT
Sbjct: 57 NLERHMSPRPGVDWPIDAAIVEHDKQLAAAGITT 90
>gnl|CDD|132357 TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA.
Members of this protein family are found exclusively in
genomes that contain putative set of labile
selenium-dependent enzyme accessory proteins as well as
homologs of a labile selenium-dependent purine
hydroxylase. A mutant in this gene in Escherichia coli
had improved stationary phase viability. The function
is unknown.
Length = 441
Score = 39.4 bits (92), Expect = 0.005
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 21 LLIKNGKVVNADK----ISDLDIYIENGVIQQLGRNLIVPG---GVRVIDAAGSYVIPGG 73
LLI NG V D DI I+ VI+ +G + IDA G ++PG
Sbjct: 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGF 60
Query: 74 IDPHTHF 80
I+ H HF
Sbjct: 61 INTHNHF 67
>gnl|CDD|223875 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino
acid transport and metabolism].
Length = 568
Score = 39.6 bits (93), Expect = 0.005
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 21/99 (21%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR----------NLIVPGGVRVIDAAGSYVI 70
L+I N +++ I DI I++G I +G+ +I+ +I G V
Sbjct: 69 LVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVT 128
Query: 71 PGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTII 109
GGID H HF + ++ A+A G TT+I
Sbjct: 129 AGGIDTHIHF----ICPQQIE-------EALASGITTMI 156
>gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The
L-isoaspartyl derivative of Asp arises non-enzymatically
over time as a form of protein damage. In this
isomerization, the connectivity of the polypeptide
changes to pass through the beta-carboxyl of the side
chain. Much but not all of this damage can be repaired
by protein-L-isoaspartate (D-aspartate)
O-methyltransferase. This model describes the
isoaspartyl dipeptidase IadA, apparently one of two such
enzymes in E. coli, an enzyme that degrades isoaspartyl
dipeptides and may unblock degradation of proteins that
cannot be repaired. This model also describes closely
related proteins from other species (e.g. Clostridium
perfringens, Thermoanaerobacter tengcongensis) that we
assume to be equivalent in function. This family shows
homology to dihydroorotases [Protein fate, Degradation
of proteins, peptides, and glycopeptides].
Length = 389
Score = 39.0 bits (91), Expect = 0.005
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 314 PPLRPDETTPTHLLTLLNENALQ----TTGSDNC----TFNKNQKELGKDSFTHIPNGVN 365
+ E P + E + T SD F++N + T + GV
Sbjct: 255 QFRKEGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENGE------LTGL--GVG 306
Query: 366 GVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVV 420
+ + E V G + EK + V ++N A + NL KG I+ G+DAD+VV
Sbjct: 307 SFETLFEEVRE-AVKDGDVPLEKALRVITSNVAGVLNLT-GKGEISPGNDADLVV 359
Score = 33.2 bits (76), Expect = 0.42
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPG----GVRVIDAAGSYVIPGGIDP 76
L+K +V + I DI I N I + + V+ G +PG ID
Sbjct: 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQ 61
Query: 77 HTH 79
H H
Sbjct: 62 HVH 64
>gnl|CDD|219672 pfam07969, Amidohydro_3, Amidohydrolase family.
Length = 392
Score = 39.0 bits (91), Expect = 0.006
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 14/109 (12%)
Query: 314 PPLRPDETTPTHLLTLLNENALQTTGSD--NCTFNKNQKELGKDSFTHIPNGVNGVQDRL 371
P R + P + LLN GSD T+ D ++ I V +
Sbjct: 296 GPERARGSLP--IKLLLNAGVKVALGSDAPVATY---------DPWSGIGAAVMR-RTAE 343
Query: 372 SVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVV 420
+ LS E+ +A+ + A L +KG +A G DAD+V+
Sbjct: 344 MLEGRVLKPDERLSLEEALALYTRGPAYALGLEDRKGTLAVGKDADLVI 392
Score = 33.2 bits (76), Expect = 0.42
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 68 YVIPGGIDPHTH-FELELMGATSVDDFYHGTKAAVAGG 104
V+PG +DPHTH L +D G+ A
Sbjct: 1 LVLPGFVDPHTHLDGTGLNLGRELDLSGTGSVAGGLAL 38
>gnl|CDD|237305 PRK13207, ureC, urease subunit alpha; Reviewed.
Length = 568
Score = 39.0 bits (92), Expect = 0.007
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 29/103 (28%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR----------NLIVPGGVRVIDAAGSYVI 70
+I N +++ I DI I++G I +G+ ++I+ G VI G V
Sbjct: 69 TVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVT 128
Query: 71 PGGIDPHTHF----ELELMGATSVDDFYHGTKAAVAGGTTTII 109
GGID H HF ++E A+A G TT+I
Sbjct: 129 AGGIDTHIHFICPQQIE---------------EALASGVTTMI 156
>gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase. This model describes
guanine deaminase, which hydrolyzes guanine to xanthine
and ammonia. Xanthine can then be converted to urate by
xanthine dehydrogenase, and urate subsequently
degraded. In some bacteria, the guanine deaminase gene
is found near the xdhABC genes for xanthine
dehydrogenase. Non-homologous forms of guanine
deaminase also exist, as well as distantly related
forms outside the scope of this model [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 401
Score = 38.4 bits (90), Expect = 0.009
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 39 IYIENGVIQQLG--RNLI--VPGGVRVIDAAGSYVIPGGIDPHTHF-ELELMGAT 88
+ +ENG I +G L +P GV + D G ++PG ID H H+ + E++ +
Sbjct: 9 LVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASY 63
>gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated.
Length = 438
Score = 38.0 bits (89), Expect = 0.011
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 37 LDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
+DI I +G I + P + +D G V P +D HTH
Sbjct: 41 VDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTH 83
>gnl|CDD|237088 PRK12393, PRK12393, amidohydrolase; Provisional.
Length = 457
Score = 38.1 bits (89), Expect = 0.011
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 19 NRLLIKNGKVV------NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPG 72
LLI+N + +A ++ DI I +G I +G L G RVIDA V PG
Sbjct: 2 PSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIG-ALTPLPGERVIDATDCVVYPG 60
Query: 73 GIDPHTH 79
++ H H
Sbjct: 61 WVNTHHH 67
Score = 30.8 bits (70), Expect = 2.4
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 394 STNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVP- 452
+ A++ L G +A G AD+ +++ R ++ V G P
Sbjct: 365 TAGGARVLGL-DAIGTLAVGQAADLAIYDLDDPR--------FFGLHDPAIAPVACGGPA 415
Query: 453 --EYVIVGGRVCVDEG 466
+ ++V GR V+ G
Sbjct: 416 PVKALLVNGRPVVENG 431
>gnl|CDD|236419 PRK09228, PRK09228, guanine deaminase; Provisional.
Length = 433
Score = 37.9 bits (89), Expect = 0.015
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
LL+++G++V A ++L + +P V D G ++PG ID H H+
Sbjct: 34 LLVEDGRIVAAGPYAEL-----------RAQ---LPADAEVTDYRGKLILPGFIDTHIHY 79
>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases,
subgroup A is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal
ion (or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 342
Score = 35.7 bits (83), Expect = 0.060
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 59 VRVIDAAGSYVIPGGIDPHTHF 80
+VID G ++PG ID HTH
Sbjct: 1 AQVIDLGGKTLMPGLIDAHTHL 22
Score = 30.7 bits (70), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 394 STNAAKIFNLYPKKGVIAEGSDADIVV 420
+ NAA++ L + GVI G AD++V
Sbjct: 304 TANAAELLGLSDELGVIEAGKLADLLV 330
>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction
also removes the guanine base from the pool and
therefore can play a role in the regulation of cellular
GTP and the guanylate nucleotide pool.
Length = 429
Score = 35.3 bits (82), Expect = 0.074
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 32 DKISDLDIYIENGVIQQLGRNLI-----------VPGGVRVIDAAGSYVIPGGIDPHTHF 80
+ + D +E+G+I + N+I G RVID+ +++PG ID H H
Sbjct: 15 ELVEDALRVVEDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHA 74
>gnl|CDD|215172 PLN02303, PLN02303, urease.
Length = 837
Score = 35.5 bits (82), Expect = 0.087
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 22 LIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSYV 69
+I N +++ I DI I++G+I +G+ N+IV VI G V
Sbjct: 337 VITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIV 396
Query: 70 IPGGIDPHTHF 80
GGID H HF
Sbjct: 397 TAGGIDCHVHF 407
>gnl|CDD|232881 TIGR00221, nagA, N-acetylglucosamine-6-phosphate deacetylase.
[Central intermediary metabolism, Amino sugars].
Length = 380
Score = 35.2 bits (81), Expect = 0.087
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 19 NRLLIKNGKVVNA-DKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPH 77
L+K+ +V + I + + I +G I + + ++ ID G+ + PG ID H
Sbjct: 3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELEPEIKEIDLPGNVLTPGFIDIH 62
Query: 78 TH 79
H
Sbjct: 63 IH 64
Score = 32.9 bits (75), Expect = 0.50
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 390 VAVTSTNAAKIFNLYPKKGVIAEGSDADIVVW--NYKAKRTI 429
++S N A+ + + G + G DA++VV+ +++ TI
Sbjct: 335 ARMSSLNPARALGIDDRLGSVTVGKDANLVVFTPDFEVILTI 376
>gnl|CDD|180428 PRK06151, PRK06151, N-ethylammeline chlorohydrolase; Provisional.
Length = 488
Score = 34.2 bits (79), Expect = 0.21
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 19 NRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGV-RVIDAAGSYVIPGGIDPH 77
+ L+++G+VV E I +G G V RVIDA + V PG ID
Sbjct: 17 DHRLLRDGEVV-----------FEGDRILFVGHRF--DGEVDRVIDAGNALVGPGFIDLD 63
Query: 78 TH 79
Sbjct: 64 AL 65
>gnl|CDD|181713 PRK09230, PRK09230, cytosine deaminase; Provisional.
Length = 426
Score = 33.1 bits (76), Expect = 0.41
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 16 SSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRN--LIVPGGVRVIDAAGSYVIPGG 73
S+ + IKN ++ + + I IE+G I + + G V+DA G IP
Sbjct: 1 SNNALMTIKNARLPGKEGL--WQITIEDGKISAIEPQSEASLEAG-EVLDAEGGLAIPPF 57
Query: 74 IDPHTH 79
I+PH H
Sbjct: 58 IEPHIH 63
>gnl|CDD|225985 COG3454, COG3454, Metal-dependent hydrolase involved in
phosphonate metabolism [Inorganic ion transport and
metabolism].
Length = 377
Score = 32.7 bits (75), Expect = 0.51
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVR---VIDAAGSYVIPGGIDPH 77
+++ N ++V D++ + + I +G+I I G ID G Y++PG I+ H
Sbjct: 1 MILSNARIVLEDRVVNGSVLIRDGLIAD-----IDEGISPLAAGIDGEGDYLLPGLIELH 55
Query: 78 T-HFE 81
T + E
Sbjct: 56 TDNLE 60
>gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional.
Length = 418
Score = 32.7 bits (75), Expect = 0.58
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 28 VVNADKISDLDIYIENGVIQQLGRNLI-VPGGVRVIDAAGSYVIPGGIDPHTHF-ELELM 85
V N D+I+D + IE+G IQ + ++ +P ++IDA+G + PG +D ++H E
Sbjct: 15 VSNTDRIAD--VLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGE---P 69
Query: 86 GATSVDDFYHGTKAAVAGGTT 106
G + AA AGG T
Sbjct: 70 GFEERETLASLAAAAAAGGFT 90
Score = 32.7 bits (75), Expect = 0.58
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 356 SFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSD 415
+F P G G++ L ++W+ V G LS + STN A+ P +A G
Sbjct: 319 AFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQEPPS--LAPGQP 376
Query: 416 ADIVVWNYKAKRTISAKT 433
A++++++ + T+SA+T
Sbjct: 377 AELILFDPQKTWTVSAQT 394
>gnl|CDD|237304 PRK13206, ureC, urease subunit alpha; Reviewed.
Length = 573
Score = 32.0 bits (73), Expect = 1.1
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 23/84 (27%)
Query: 38 DIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSYVIPGGIDPHTHFELELM 85
D+ I +G I +G+ +L++ +I G + G ID H HF +
Sbjct: 90 DVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHF----I 145
Query: 86 GATSVDDFYHGTKAAVAGGTTTII 109
VD+ A+A G TT+I
Sbjct: 146 CPQIVDE-------ALAAGITTLI 162
>gnl|CDD|219435 pfam07502, MANEC, MANEC domain. This region of similarity,
comprising 8 conserved cysteines, is found in the
N-terminal region of several membrane-associated and
extracellular proteins. Although formerly called MANSC
(for motif at N terminus with seven cysteines) it has
now been renamed by MANEC (motif at N terminus with
eight cysteines) by Richard Mitter and Stephen
Fitzgerald after the discovery of an eighth conserved
cysteine. It is postulated that this domain may play a
role in the formation of protein complexes involving
various protease activators and inhibitors.
Length = 93
Score = 28.9 bits (65), Expect = 1.9
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 208 IIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDA 267
IID TQ ++AG + E + E+ RAC + +C L + + A
Sbjct: 17 IID--TQASVSAGARFLESPHVRTWEDCV-----RAC--CSTPNCNLAIFELQRGGKQPA 67
Query: 268 MAY 270
+ Y
Sbjct: 68 LCY 70
>gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase. These proteins are
amidohydrolases that are related to pfam01979.
Length = 272
Score = 30.2 bits (68), Expect = 2.6
Identities = 25/158 (15%), Positives = 40/158 (25%), Gaps = 17/158 (10%)
Query: 74 IDPHTHF--------ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYE 125
ID H H L LM D + + G + A+
Sbjct: 1 IDAHAHLPGGSIPDPRLPLMDRRGYDPRDASPEDYLVLGAALGVARAVIVAAS----CRG 56
Query: 126 SWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKH----GVNSFKTFMAYKGLYMLS 181
+ + E + G + AEL E+ G + G +L
Sbjct: 57 ANNRVLAEALKRPGRFVGGAALPPPDPEDAAAEL-ERRLAELGFRGVRLNPHPGGGPLLD 115
Query: 182 DGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAA 219
F A+ LG +H G+ +
Sbjct: 116 PRLDDPIFEALAELGLPVDLHTGFGDAGEDLDAAQPLL 153
>gnl|CDD|178432 PLN02839, PLN02839, nudix hydrolase.
Length = 372
Score = 30.4 bits (68), Expect = 3.2
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 367 VQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNL----YPKKGVIAEG--------S 414
V D + ++ +KG++PGI + E + S NA F+L P G+ G
Sbjct: 156 VADVIKILGDKGIIPGIRN-ELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVER 214
Query: 415 DADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV---CVDEGNL 468
D +W KR++S T+ D+ LV G+P + G + C +E +
Sbjct: 215 DGQKFLW--IGKRSLSKSTYPGMLDH-----LVAGGLPHGISCGENLVKECEEEAGI 264
>gnl|CDD|235873 PRK06846, PRK06846, putative deaminase; Validated.
Length = 410
Score = 30.4 bits (69), Expect = 3.4
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 38 DIYIENGVIQQLGRNLIVP-GGVRVIDAAGSYVIPGGIDPHTH 79
+ I++G I + N VP + DA G ++P + H H
Sbjct: 33 TLEIQDGKIVAIRPNKQVPDATLPTYDANGLLMLPAFREMHIH 75
>gnl|CDD|183926 PRK13260, PRK13260, 2,3-diketo-L-gulonate reductase; Provisional.
Length = 332
Score = 29.7 bits (67), Expect = 4.6
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 24/74 (32%)
Query: 151 QVQQEMAELCEK------------HGVNSFKTFMAY--KGLY--------MLSDG--ELY 186
V +E A+ C + HGVN F F+ G + S G E +
Sbjct: 20 GVDEETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPQRVTSLGAIEQW 79
Query: 187 DAFSAIKNLGAIAM 200
DA AI NL A M
Sbjct: 80 DAQRAIGNLTAKKM 93
>gnl|CDD|221375 pfam12008, EcoR124_C, Type I restriction and modification enzyme -
subunit R C terminal. This enzyme has been
characterized and shown to belong to a new family of the
type I class of restriction and modification enzymes.
This family is involved in bacterial defence by making
double strand breaks in specific double stranded DNA
sequences, e.g. that of invading bacteriophages. EcoR124
is made up of three subunits, HsdR, HsdS and HsdM. The R
subunit has ATPase and restriction endonuclease
activity. This domain is the C terminal of the R
subunit.
Length = 269
Score = 29.5 bits (67), Expect = 4.7
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 146 TWWSDQVQQEMAELCEKHGVNS--FKTFMAYKGLYMLSDGELYDAFSAIKNL 195
T+ +++ ++E+ EL E+ G++ K F+ Y+ D +K+L
Sbjct: 190 TFKAEKKEKELEELAEEEGLDEEALKEFID---EYLTGDLNEIPRGDDLKDL 238
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 29.9 bits (68), Expect = 4.8
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 236 EAEAVTR-ACTIANQVDCPLYVVHI-------MSKAAGDAMAYKRKELMKK--GKHCTLY 285
+E + R A +A+++ V++ +S+ + + L ++ + TLY
Sbjct: 260 GSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLH-ENLRLAEELGAEIVTLY 318
Query: 286 GETLAAAVGTHANQ 299
G +A A+ +A +
Sbjct: 319 GGDVAKAIARYARE 332
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 29.5 bits (67), Expect = 5.5
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 441 NIFEGLVCHGVPEYVI---VGGRVCVDEGNLRVAQGQG 475
NIF+ V + E + V GR C N V GQ
Sbjct: 249 NIFDATVIERLDEQRVRANVEGRECNIYVNFAVEPGQK 286
>gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional.
Length = 408
Score = 29.2 bits (66), Expect = 6.8
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAK 426
L+ ++ T AK L G I EG DAD+ V+ +
Sbjct: 340 LAKILLLSATR-YGAKALGL--NNGEIKEGKDADLSVFELPEE 379
Score = 28.8 bits (65), Expect = 8.7
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 21/66 (31%)
Query: 22 LIKNGKVVNADKISDLDIYIENGVIQ------QLGRNLIVPGGVRVIDAAGSYVIPGGID 75
++++G VV DKI ++ Y EN + Q +N S ++P I+
Sbjct: 18 ILEDGAVVFDDKILEIGDY-ENLKKKYPNAKIQFFKN--------------SVLLPAFIN 62
Query: 76 PHTHFE 81
PHTH E
Sbjct: 63 PHTHLE 68
>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated.
Length = 255
Score = 28.6 bits (64), Expect = 8.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 151 QVQQEMAELCEKHGVN 166
++QQEM +L +K+GVN
Sbjct: 112 KLQQEMMQLFQKNGVN 127
>gnl|CDD|235969 PRK07213, PRK07213, chlorohydrolase; Provisional.
Length = 375
Score = 28.9 bits (65), Expect = 9.2
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 21 LLIKNGKVVNADKISDLD-----IYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID 75
L+ NG + + D + + IE+G+I+ V G VIDA G VIP I+
Sbjct: 2 LVYLNGNFLYGE---DFEPKKGNLVIEDGIIKGFTNE--VHEGN-VIDAKGL-VIPPLIN 54
Query: 76 PHTH 79
HTH
Sbjct: 55 AHTH 58
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 29.1 bits (66), Expect = 9.6
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 84 LMGATSVDDFYHGTKAAVAGGTTTIID-----FALPRKGESLIKTYESWRQKADEKVCCD 138
L A + + AA+A G ++ A L+ W Q +
Sbjct: 1083 LCVADTEEALLRQLAAALATGNVAVVAADSGLAAALADLPGLVAARIDWTQDWEADDPFA 1142
Query: 139 YALHVGITWWSDQVQQEMAEL 159
AL G + V+Q +A
Sbjct: 1143 GALLEGDAERARAVRQALAAR 1163
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.399
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,463,033
Number of extensions: 3004082
Number of successful extensions: 3111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2956
Number of HSP's successfully gapped: 166
Length of query: 596
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 494
Effective length of database: 6,413,494
Effective search space: 3168266036
Effective search space used: 3168266036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)