RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10113
(596 letters)
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A
Length = 501
Score = 668 bits (1727), Expect = 0.0
Identities = 255/487 (52%), Positives = 338/487 (69%), Gaps = 8/487 (1%)
Query: 5 TPLKKVPIHLQS-SQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVID 63
L ++ QS + +RLLIK GK+VN D+ DIY+E+G+I+Q+G NLIVPGGV+ I+
Sbjct: 11 VDLGTENLYFQSMTSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIE 70
Query: 64 AAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKT 123
A VIPGGID HT F++ G TS DDF+ GTKAA+AGGTT IID +P G SL+
Sbjct: 71 AHSRMVIPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAA 130
Query: 124 YESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDG 183
++ WR+ AD K CCDY+LHV I+ W +Q+EM L + HGVNSF +MA+K + L+D
Sbjct: 131 FDQWREWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDC 190
Query: 184 ELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRA 243
++Y+ S I+++GAIA VHAENG+II + Q++L GI GPEGH LSRPEEVEAEAV RA
Sbjct: 191 QIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRA 250
Query: 244 CTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPC- 302
TIANQ +CPLY+ +MSK++ + +A RK+ +YGE + A++GT +
Sbjct: 251 ITIANQTNCPLYITKVMSKSSAEVIAQARKKGTV------VYGEPITASLGTDGSHYWSK 304
Query: 303 TWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPN 362
W AA V SPPL PD TTP L +LL+ LQ TGS +CTFN QK +GKD+FT IP
Sbjct: 305 NWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPE 364
Query: 363 GVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
G NG ++R+SVIW+K VV G + +FVAVTSTNAAK+FNLYP+KG IA GSDAD+V+W+
Sbjct: 365 GTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWD 424
Query: 423 YKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHT 482
+ +TISAKTH + +YNIFEG+ C G P VI G++ +++G L V +G G Y+P
Sbjct: 425 PDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKP 484
Query: 483 NPPFVYE 489
P FVY+
Sbjct: 485 FPDFVYK 491
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 667 bits (1723), Expect = 0.0
Identities = 273/488 (55%), Positives = 350/488 (71%), Gaps = 11/488 (2%)
Query: 8 KKVPIHLQSSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPG----GVRVID 63
+ + ++ +RLLI+ G+VVN D D+ +E+GV++ LG +L+ PG G+RV+D
Sbjct: 16 ENLYFQSMAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLD 75
Query: 64 AAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKT 123
AAG V+PGGID HTH + MG+ S+DDF+ GTKAA++GGTT IIDFA+P+KG SLI+
Sbjct: 76 AAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEA 135
Query: 124 YESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDG 183
+E+WR AD KVCCDY+LHV +TWWSDQV++EM L + GVNSFK FMAYK LYM++D
Sbjct: 136 FETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDL 195
Query: 184 ELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRA 243
ELY+AFS K +GAIA VHAENG++I + +K+LA GI GPEGH+L RPE VEAEA RA
Sbjct: 196 ELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRA 255
Query: 244 CTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCT 303
TIA+ V+CPLY+VH+MSK+A +A R++ +YGE +AA++GT
Sbjct: 256 ITIASAVNCPLYIVHVMSKSAAKVIADARRDGKV------VYGEPIAASLGTDGTHYWNK 309
Query: 304 -WHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPN 362
WH A HV+ PPLRPD +TP L+ LL + L TTG+DNCTFN QK LGKD FT IPN
Sbjct: 310 EWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPN 369
Query: 363 GVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
GVNGV+DR+SVIWEKGV G + +FVAVTSTNAAKIFNLYP+KG IA GSDADIV+W+
Sbjct: 370 GVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWD 429
Query: 423 YKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHT 482
K RTISAKTH A ++NIFEG+VCHGVP I G+V + G V G G ++P
Sbjct: 430 PKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKP 489
Query: 483 NPPFVYEG 490
++Y+
Sbjct: 490 FAEYIYKR 497
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 649 bits (1677), Expect = 0.0
Identities = 177/468 (37%), Positives = 255/468 (54%), Gaps = 11/468 (2%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
LLIKNG+++ AD DIY E I ++G+NL P G VIDA G YV PG IDPH H
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
L M + D G+KAA+ GGTTT I+ P + + ++ Y+ W+ KA+ CDY
Sbjct: 62 YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
H+ ++ + ++ + ++ E+ G++SFK F++YK + + DGE+Y K LG I
Sbjct: 122 FHMAVSKFDEKTEGQLREIVA-DGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
H EN E++ + QKLL+ G GPE H+ SRPE VEAE R T YVVH+
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240
Query: 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDE 320
K A DA + + +Y E++ + +++SPPLR D+
Sbjct: 241 CKPALDAAMAAKARGVP------IYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLR-DK 293
Query: 321 TTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV 380
L L + + T G+D+C F+ QK LGK++FT IPNG+ ++DR+++++ GV
Sbjct: 294 RNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVS 353
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
G L +FV ST AAK+F L+P+KG IA GSDAD+VV++ + + TIS KT DY
Sbjct: 354 RGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKTQHVNNDY 413
Query: 441 NIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFVY 488
N FEG G P V V G+V V +G +G G L P +
Sbjct: 414 NGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRR---EPMYF 458
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 650 bits (1680), Expect = 0.0
Identities = 238/540 (44%), Positives = 330/540 (61%), Gaps = 25/540 (4%)
Query: 16 SSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID 75
+LIKNG VVN D+ D+ +ENG+I+++ +N+ G++V+DA ++PGGID
Sbjct: 5 DQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGID 64
Query: 76 PHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKV 135
HTHF+L MG SVDDF GT+AAVAGGTT IIDF +P +G+SL++ Y+ W++ ADEKV
Sbjct: 65 THTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKV 124
Query: 136 CCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNL 195
CDY+LHV ITWWS+QV +EM L ++ GVNSFK FMAYK +M++D E+Y F K L
Sbjct: 125 NCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKEL 184
Query: 196 GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255
GAIA VHAENG+++ + +K+L GI GPEGH+LSRPE +EAEA RA IA+ V P+Y
Sbjct: 185 GAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVY 244
Query: 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCT-WHDQAAHVLSP 314
+VH+ S A D + RKE ++ +YGE +AA +G + + W AA V+ P
Sbjct: 245 IVHVQSIGAADVICKHRKEGVR------VYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGP 298
Query: 315 PLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVI 374
P+RPD T L+ L L G+DNCTF +QK +GKD FT IPNGVNGV+DR+S++
Sbjct: 299 PIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIV 358
Query: 375 WEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTH 434
WE GV G L+ +FV TS+ A+IFN+YP+KG I G D DIV+W+ +TIS TH
Sbjct: 359 WENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTH 418
Query: 435 AHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFVYEGQTPE 494
HA D+NIFEG+ G+ IV G + + L +G G ++P P V++G
Sbjct: 419 HHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGP-VFDGIEQR 477
Query: 495 VDIDHKENHEVIEEIREKLHGLTPNNNHKISAPRSPSYSSTSSVYGDADYGHNQIHTGKG 554
+ ++ +V R+ + ++S D D H+ H G
Sbjct: 478 DKVRNELLRKV---DRKPYED--------------DNTKNSSKPGDDDDKHHHHHHHHSG 520
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 642 bits (1659), Expect = 0.0
Identities = 200/468 (42%), Positives = 277/468 (59%), Gaps = 12/468 (2%)
Query: 20 RLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
+IK G +V AD D+ +E G I ++G NL G +DA G YV+PGGIDPHTH
Sbjct: 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNL---SGAETLDATGCYVMPGGIDPHTH 58
Query: 80 FELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDY 139
E+ MG S DDF GT+AA+AGGTT ++DFALP G+SL++ W K+ + CDY
Sbjct: 59 LEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKS-TRANCDY 117
Query: 140 ALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIA 199
+ H+ ITWW +QV EM + + G+N+FK FMAYKG M+ D E++ +F LGA+
Sbjct: 118 SFHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALP 177
Query: 200 MVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHI 259
+VHAENG+++ + KLLA G GPE H SRP EVE EA RA IA+ CP+Y+VH
Sbjct: 178 LVHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHT 237
Query: 260 MSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCT-WHDQAAHVLSPPLRP 318
+ A +A+ R + M+ ++GE L + + W A V+SPP R
Sbjct: 238 SCEQAHEAIRRARAKGMR------VFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFR- 290
Query: 319 DETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG 378
++ L L +LQ +D+C F QK G FT IPNG G++DR+ ++W G
Sbjct: 291 NKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYG 350
Query: 379 VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHAC 438
V G ++ +FVAVTSTN AKI N+YPKKG I G+DAD+VVW+ K +TISAKT A
Sbjct: 351 VATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAKTQQSAI 410
Query: 439 DYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPF 486
DYN+FEG G+P + + G V ++EG ++ +G G ++ P
Sbjct: 411 DYNVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFVRRDPFPAV 458
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 639 bits (1651), Expect = 0.0
Identities = 180/461 (39%), Positives = 253/461 (54%), Gaps = 9/461 (1%)
Query: 20 RLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
+ I+NG VV A D+ I+ + +G +L VIDA G Y++PGGIDPHTH
Sbjct: 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQATDA-EVIDATGYYLLPGGIDPHTH 60
Query: 80 FELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDY 139
++ G + D+F+ GTKAA GGTT+I+DF L KGESL +W +KA K DY
Sbjct: 61 LDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDY 120
Query: 140 ALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIA 199
H+ ++ +D V +E+ + G+ S K FMAYK + M D L+ K LGA+
Sbjct: 121 GFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLMADDETLFKTLIRAKELGALV 180
Query: 200 MVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHI 259
VHAENG+++D T++ LA G P H +RP E E EA RA + D LYVVH+
Sbjct: 181 QVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240
Query: 260 MSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPD 319
A +A R++ +YGET + + + A +V SPPLR +
Sbjct: 241 SCADAVRRIAEAREKGWN------VYGETCPQYLVLDITALEKPDFEGAKYVWSPPLR-E 293
Query: 320 ETTPTHLLTLLNENALQTTGSDNCTFN-KNQKELGKDSFTHIPNGVNGVQDRLSVIWEKG 378
+ L + L LQT GSD+C FN QKELG+ FT IPNG ++DR+++++ +G
Sbjct: 294 KWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEG 353
Query: 379 VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHAC 438
V G +S +FV +TST AK+F ++P+KG IA GSDADIV+++ +RTIS +TH
Sbjct: 354 VRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVETHHMNV 413
Query: 439 DYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLP 479
DYN FEG+ HG V+ G V G G Y+
Sbjct: 414 DYNPFEGMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVK 454
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 630 bits (1627), Expect = 0.0
Identities = 170/460 (36%), Positives = 246/460 (53%), Gaps = 12/460 (2%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
++IKNG +V AD IS D+ I++G I Q+G L R IDAAG YV PGGID HTH
Sbjct: 3 IIIKNGTIVTADGISRADLGIKDGKITQIGGAL--GPAERTIDAAGRYVFPGGIDVHTHV 60
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
E S D F T AA GGTTTI+DF +G SL + W A K DY
Sbjct: 61 ETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYG 120
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
H+ + +D V +E+ L + G+ SFK FMAY+G+ M+ D L G++ M
Sbjct: 121 YHIIVLDPTDSVIEELEVLPDL-GITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVM 179
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
VHAENG+ D K +A G P H LSRP VEAEA RA +A V+ P+Y+VH+
Sbjct: 180 VHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHVT 239
Query: 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDE 320
+ + + + + ++ ET + + + A +V +PP R +
Sbjct: 240 CEESLEEVMRAKSRGVR------ALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKK 293
Query: 321 TTPTHLLTLLNENALQTTGSDNCTFN-KNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGV 379
L L +T SD+C++ K K+ G++ F IPNG GV++RL ++++ GV
Sbjct: 294 DHD-VLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQ-GV 351
Query: 380 VPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACD 439
G +S +FV + +T AK+F ++P+KG IA GSDADIV+W+ +A+ I +A D
Sbjct: 352 NEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTAMHNAMD 411
Query: 440 YNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLP 479
Y+ +EG GVP+ V++ G+V VDEG+ G +L
Sbjct: 412 YSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLK 451
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 594 bits (1533), Expect = 0.0
Identities = 120/462 (25%), Positives = 215/462 (46%), Gaps = 18/462 (3%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
+++KN ++V++D I++ DI +++G + + + R IDA G +V+PG +D H H
Sbjct: 4 VIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHI 63
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
++ F +++A GG TTII+ + + + + +++A +++ D+A
Sbjct: 64 I-DMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFA 122
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG---LYMLSDGELYDAFSAIKNLGA 197
L+ G + E+ ++ G FK+ MA +SDGEL++ F I G+
Sbjct: 123 LYGGGVPGNLP---EIRKM-HDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGS 178
Query: 198 IAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVV 257
+ +VHAEN II +++ AAG K ++ S+P E EA+ RA + + C L V+
Sbjct: 179 VIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVL 238
Query: 258 HIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLR 317
H+ + + + + E ++ E+ + + ++PP+R
Sbjct: 239 HVSNPDGVELIHQAQSEGQD------VHCESGPQYLNITTDDA---ERIGPYMKVAPPVR 289
Query: 318 PDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEK 377
L L + T GSD+ KE G NG G++ L ++
Sbjct: 290 -SAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTN 348
Query: 378 GVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHA 437
GV G LS E+ V V AK+F +YP+KG + GSDAD+++ + + A
Sbjct: 349 GVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQFRSL 408
Query: 438 CDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLP 479
Y+ F+G+ G P +V G V ++G + V QG G ++
Sbjct: 409 HKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVT 450
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 567 bits (1462), Expect = 0.0
Identities = 149/534 (27%), Positives = 238/534 (44%), Gaps = 71/534 (13%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+IKNG + A I +I + NG +Q + ++ G VIDA G+++ PGGID H H
Sbjct: 5 LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64
Query: 81 ELE-LMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYE-----SWRQKADEK 134
+ + VD H T++AVAGGTTT++ F+ + + +++
Sbjct: 65 DEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQT 124
Query: 135 VCCDYALHVGITWWSDQVQQEMAEL-------CEKHGVNSFKTFMAYKGLYMLSDGELYD 187
+ CDY LH+ + + L +GV+S K FM Y GL +SD ++
Sbjct: 125 LYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGL-QISDYDIMS 183
Query: 188 AFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIA 247
A A + G M+HAENG+++ + L G+ H +SRP VE EA RA T+A
Sbjct: 184 AMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLA 243
Query: 248 NQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETL------------------ 289
+D P+ VH+ S A + + + + +K +Y ET
Sbjct: 244 TTMDTPILFVHVSSPQAAEVIKQAQTKGLK------VYAETCPQYALLSDAITRCHHHGE 297
Query: 290 ---------AAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGS 340
+++ P + ++ SPP+RP+ T + +N GS
Sbjct: 298 VESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQK-SIWKGMNNGTFTIVGS 356
Query: 341 DNCTFNKNQKELG-------------KDSFTHIPNGVNGVQDRLSVIWEKGVVPG-ILSP 386
D+C++N +K F +IPNG+ GV R+ ++++ G + G + S
Sbjct: 357 DHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSM 416
Query: 387 EKFVAVTSTNAAKIFNLYPKKGVIAEG-SDADIVVWN--------YKAKRTISAKTHAHA 437
K V + TN AK++ +YP+KG I G SDAD+V+W + I+ K H
Sbjct: 417 MKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHN 476
Query: 438 CDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTHTNPPFVYEGQ 491
CDY FEG+ P Y IV G++ EG + G YL + + +
Sbjct: 477 CDYTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLKRGKSFMCTPKNE 530
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 449 bits (1158), Expect = e-154
Identities = 115/476 (24%), Positives = 195/476 (40%), Gaps = 46/476 (9%)
Query: 20 RLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
L+IKNG V+ ++ +DI ++ G I +G++L V+DA+G V PG +D HTH
Sbjct: 24 DLIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVMDASGLVVSPGMVDAHTH 81
Query: 80 FELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIK-TYESWRQKADEKVCCD 138
G + + + GT+AA GG TT+I+ L + ++ + + E A K+ D
Sbjct: 82 ISE--PGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTID 139
Query: 139 YALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYM-------LSDGELYDAFSA 191
A G+ ++ + EL ++ GV FK F+A G ++D + +
Sbjct: 140 AAQLGGLVSYNID---RLHEL-DEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQK 195
Query: 192 IKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVD 251
+ LG +VH EN I D+ ++ G + SRP E EA+ R +A
Sbjct: 196 LGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAG 255
Query: 252 CPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTH-----ANQIPCTWHD 306
C L+V H+ S + + R+E + E+ H +Q
Sbjct: 256 CRLHVCHVSSPEGVEEVTRARQEGQD------ITCESC-----PHYFVLDTDQFE---EI 301
Query: 307 QAAHVLSPPLRPDETTPTH---LLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNG 363
SPP+R E + + L + SD+ E+ + G
Sbjct: 302 GTLAKCSPPIRDLE----NQKGMWEKLFNGEIDCLVSDHSPC---PPEMKAGNIMKAWGG 354
Query: 364 VNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNY 423
+ G+Q + V++++ V +S F + +TNAA IF L +KG IA G DAD V
Sbjct: 355 IAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-QQKGRIAPGKDADFVFIQP 413
Query: 424 KAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLP 479
+ ++ + + + G I+ G V D +G ++
Sbjct: 414 NSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFIL 469
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 442 bits (1139), Expect = e-151
Identities = 110/468 (23%), Positives = 179/468 (38%), Gaps = 43/468 (9%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNL-IVPGGVRVIDAAGSYVIPGGIDPHTH 79
L+I++ VV D+ I NG++ + I ID G ++ PG +D H H
Sbjct: 8 LIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVH 67
Query: 80 FELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESL-IKTYESWRQKADEKVCCD 138
F G T + F G+K+ AGG TT D L ++ + + RQ A+EK D
Sbjct: 68 FNE--PGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVD 125
Query: 139 YALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKG---LYMLSDGELYDAFSAIKNL 195
Y G+ + + +L GV FK FM+ G D L I L
Sbjct: 126 YRFWGGLVPGNID---HLQDL-HDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAAL 181
Query: 196 GAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLY 255
G+I VHAE+ E+++ T + + + +RP E EAV R A CP++
Sbjct: 182 GSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIH 241
Query: 256 VVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETL-------AAAVGTHANQIPCTWHDQA 308
+ H+ S+ + + E G + + ET C
Sbjct: 242 ICHVSSRKVLKRIKQAKGE----GVN--VSVETCPHYLLFSLDEFAEIGYLAKC------ 289
Query: 309 AHVLSPPLRPDETTPTH---LLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVN 365
+PPLR + L L + SD+ K + + G+
Sbjct: 290 ----APPLRERQ----EVEDLWDGLMAGEIDLISSDHSPSLPQMKT--GKTIFEVWGGIA 339
Query: 366 GVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKA 425
G Q+ L+V+ +G + + V + ST AK F LYP+KG I G++A + +
Sbjct: 340 GCQNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNE 399
Query: 426 KRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQG 473
T++A + + + G G ++ I G+ +
Sbjct: 400 SYTLNASDLYYRHPISPYVGQRFRGKVKHTICQGKHVYQDHEGHHHHH 447
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis}
Length = 452
Score = 266 bits (682), Expect = 6e-83
Identities = 101/480 (21%), Positives = 170/480 (35%), Gaps = 63/480 (13%)
Query: 20 RLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPG----GVRVIDAAGSYVIPGGID 75
++L++N + N K + I+ I ++ + VI+ +G + PG ID
Sbjct: 5 KILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCID 64
Query: 76 PHTHF-ELELMGATSVDDFYHGTKAAVAGGTTTIIDFA--LPRKGESLIKTYESWRQK-- 130
HF E G T ++AAVAGG T+ +D P +E +K
Sbjct: 65 DQVHFRE---PGLTHKATIASESRAAVAGGVTSFMDMPNTNP-----PTTMWERLLEKRQ 116
Query: 131 -ADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAF 189
+ +Y G T +D + E+ + +KH V K F+ ML D
Sbjct: 117 IGADTAWANYGFFFGGT--NDNID-EIKRV-DKHLVPGLKLFLGSSTGNMLVD-NKETLE 171
Query: 190 SAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIK--GPEGHQLSRPEEVEAEAVTRACTIA 247
+ H E EII N + A H L R EE + A +A
Sbjct: 172 KIFGECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELA 231
Query: 248 NQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETL-------AAAVGTHANQI 300
+++ L+++H+ ++ K T E G N+I
Sbjct: 232 ERMNARLHILHLSTEKELSLFRNDIPT---AQKRIT--SEVCVHHLWFSDTDYGRLGNRI 286
Query: 301 PCTWHDQAAHVLSPPLRPDETTPTH---LLTLLNENALQTTGSDN--CTFNKNQKELGKD 355
+P ++ + L + + +D+ +KE
Sbjct: 287 KW----------NPAIK----KESDREALRAAVRNGRIDIIATDHAPHL--LREKEGS-- 328
Query: 356 SFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSD 415
+G VQ L + E GI S E+ V+ T+ A +F + K+G I G
Sbjct: 329 -CLQAASGGPLVQHSLLALLE-LCNQGIFSIEEIVSKTAHIPATLFAI-EKRGYIRPGYY 385
Query: 416 ADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQG 475
AD+V+ + + T+SA C ++ FEG Y V G + +G L ++
Sbjct: 386 ADLVLVDPSSPHTVSADNILSLCGWSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTV 445
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 156 bits (395), Expect = 4e-41
Identities = 66/420 (15%), Positives = 113/420 (26%), Gaps = 67/420 (15%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSY 68
L+I N +V+ I DI I++G I +G+ NL V + G
Sbjct: 68 LIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLI 127
Query: 69 VIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKT----- 123
V GGID H HF A A G TT+I + T
Sbjct: 128 VTAGGIDTHIHFISPQQ-----------IPTAFASGVTTMIGGGTGPADGTNATTITPGR 176
Query: 124 -YESWRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSD 182
W +A E+ + + +A+ E G FK + +
Sbjct: 177 RNLKWMLRAAEEYSMNLGFLAKG---NASNDASLADQIE-AGAIGFKIHEDWGT----TP 228
Query: 183 GELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTR 242
+ A +H + + A I G H E
Sbjct: 229 SAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAA--IAGRTMH----TFHTEGAGGGH 282
Query: 243 ACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPC 302
A I + + + + ++
Sbjct: 283 APDIIKVAGEHNILPASTNPTIP---------FTVNTEAEHMDMLM------VCHHKDKS 327
Query: 303 TWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPN 362
D S T TL + A T SD+ + + T
Sbjct: 328 IKED-VQFADSRIRPQ---TIAAEDTLHDMGAFSITSSDSQAMGRV-----GEVITRTWQ 378
Query: 363 GVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
+ + + E+ +++++ + N A + G + G AD+V+W+
Sbjct: 379 TADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWS 438
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 147 bits (374), Expect = 4e-39
Identities = 97/470 (20%), Positives = 176/470 (37%), Gaps = 82/470 (17%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
LIKNGKV+ ++ DI I+ VI+Q+ + GV +IDA G +V PG +D H H
Sbjct: 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHL 61
Query: 81 -ELELMGATSVDDFYHGTKAAVAGGTTTI---------IDFALPRKGESLIKTYESWRQK 130
E G + GTKAA GG TT+ D + +E+ ++
Sbjct: 62 REP---GGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSV---------EHFEALQKL 109
Query: 131 ADEKVCCDYALHVG-ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGE----- 184
D+ L IT + Q+ +E+ + + +G + +D
Sbjct: 110 IDDNAQVR-VLPYASIT--TRQLGKELVDFPA----------LVKEGAFAFTDDGVGVQT 156
Query: 185 ---LYDAFSAIKNLGAIAMVHAENGEIIDKN--TQKLLAA--GIKGPEGHQLSRPEEVEA 237
+Y+ + + H E+ +I + + GI G P E+
Sbjct: 157 ASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEGKRSKELGIPG-------IPNICES 209
Query: 238 EAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTH- 296
+ R +A C +V H+ +K + + + + G H T A V H
Sbjct: 210 VQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAK----RAGIHVT-------AEVTPHH 258
Query: 297 --ANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTL---LNENALQTTGSDNCTFNKNQKE 351
+ ++ + +PPLR + L L + + +D+ +++K
Sbjct: 259 LLLTEDDIPGNNAIYKM-NPPLR----STEDREALLEGLLDGTIDCIATDHAPHARDEKA 313
Query: 352 LGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIA 411
P G+ G + +++ V G + ++ V + + FNL + G +
Sbjct: 314 QP---MEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNL--EYGTLK 368
Query: 412 EGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
E AD+ + + +++ I + D F G +G P +V G V
Sbjct: 369 ENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEV 418
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 143 bits (363), Expect = 1e-37
Identities = 105/481 (21%), Positives = 169/481 (35%), Gaps = 84/481 (17%)
Query: 20 RLLIKNGKVVN-ADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
L KNG+ +N KI D+ +++G I ++ N I VID G + PG +D H
Sbjct: 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAEN-ITADNAEVIDVNGKLIAPGLVDVHV 60
Query: 79 HF-ELELMGATSVDDFYHGTKAAVAGGTTTI---------IDFALPRKGESLIKTYESWR 128
H E G + GT AA GG TTI D + E +
Sbjct: 61 HLREP---GGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCR---------EHMEDLQ 108
Query: 129 QKADEKVCCDYALHVG-ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGE--- 184
+ EK + L G IT Q EM + + G + +D
Sbjct: 109 NRIKEKAHVN-VLPYGAIT--VRQAGSEMTDFET----------LKELGAFAFTDDGVGV 155
Query: 185 -----LYDAFSAIKNLGAIAMVHAENGEIIDKN--TQKLLAA--GIKGPEGHQLSRPEEV 235
+ A L + H E +I+K + + G+ G P
Sbjct: 156 QDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKFSEKHGLNG-------IPSVC 208
Query: 236 EAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGT 295
E+ + R +A DC +V H+ +K + + + + G T A V
Sbjct: 209 ESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAK----RAGIKVT-------AEVTP 257
Query: 296 H---ANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTL---LNENALQTTGSDNCTFNKNQ 349
H + D + +PPLR L L + + +D+ +
Sbjct: 258 HHLVLCEDDIPSADPNFKM-NPPLR----GKEDHEALIEGLLDGTIDMIATDHAPHTAEE 312
Query: 350 KELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGV 409
K G P G+ G + +++ V GI++ E+ + + A F L + G
Sbjct: 313 KAQG---IERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGL--EAGR 367
Query: 410 IAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLR 469
+ EG ADI + + + + I T F G C G P IVGG++ + +
Sbjct: 368 LKEGRTADITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKESAL 427
Query: 470 V 470
V
Sbjct: 428 V 428
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 142 bits (360), Expect = 2e-36
Identities = 69/416 (16%), Positives = 117/416 (28%), Gaps = 59/416 (14%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSY 68
LL+ N +++ I DI +++G I +G+ N+IV VI A G
Sbjct: 69 LLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKI 128
Query: 69 VIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESL--IKTYES 126
V GGID H HF A+A G TT+ S T
Sbjct: 129 VTAGGIDTHVHFINPD-----------QVDVALANGITTLFGGGTGPAEGSKATTVTPGP 177
Query: 127 WRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELY 186
W + K ++VGI G K + + +
Sbjct: 178 WNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQIDAGAAGLKIHEDWGA----TPASID 233
Query: 187 DAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTI 246
+ + +H++ L A ++ VE A I
Sbjct: 234 RSLTVADEADVQVAIHSDTLNEAGFLEDTLRA------INGRVIHSFHVEGAGGGHAPDI 287
Query: 247 ANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHD 306
P + + + + +H + V H D
Sbjct: 288 MAMAGHPNVLPSSTNPT-------RPFTVNTIDEHLDML------MVCHHLK--QNIPED 332
Query: 307 QAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNG 366
A S T L + + +D + G+
Sbjct: 333 -VAFADSRIRPE---TIAAEDILHDLGIISMMSTDALAMGR----AGEMVLRTWQTADKM 384
Query: 367 VQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
+ R + E+ +++V+ + N A + + G I EG AD+V+W
Sbjct: 385 KKQRG-PLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWE 439
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 137 bits (347), Expect = 4e-35
Identities = 104/477 (21%), Positives = 180/477 (37%), Gaps = 96/477 (20%)
Query: 20 RLLIKNGKVVNADKISD--LDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPH 77
+L++KNG V++ + + DI +ENG I+++ +N++VP +IDA G V PG ID H
Sbjct: 48 KLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVPE-AEIIDAKGLIVCPGFIDIH 106
Query: 78 THF-ELELMGATSVDDFYHGTKAAVAGGTTTI---------IDFALPRKGESLIKTYESW 127
H + G T +D G++ AVAGG TTI ID
Sbjct: 107 VHLRD---PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNT---------TVVNYI 154
Query: 128 RQKADEKVCCDYALHVG-ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGE-- 184
QK+ C L G IT + +E+A+ + G +D
Sbjct: 155 LQKSKSVGLCR-VLPTGTIT--KGRKGKEIADFYS----------LKEAGCVAFTDDGSP 201
Query: 185 ------LYDAFSAIKNLGAIAMVHAENGEIID------KNTQKLLAAGIKGPEGHQLSRP 232
+ A LG M H E+ ++ + + L G+ R
Sbjct: 202 VMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSALL---GLSS-------RA 251
Query: 233 EEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAA 292
E E + R +A + +++ H+ +K + + + + + +KG T
Sbjct: 252 PEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFK----EKGVKIT-------CE 300
Query: 293 VGTH---ANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDN-----CT 344
V + + A V +PPLR L L+ ++ T
Sbjct: 301 VNPNHLLFTEREVLNSGANARV-NPPLR----KKEDRLALI--EGVK----RGIIDCFAT 349
Query: 345 FNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLY 404
+ + K+ G+ G+Q L E GI+S +K + + + N A+I +
Sbjct: 350 DHAPHQTFEKELVEFAMPGIIGLQTALPSALEL-YRKGIISLKKLIEMFTINPARIIGV- 407
Query: 405 PKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
G + GS ADI +++ + ++ +T+ G V G Y I G++
Sbjct: 408 -DLGTLKLGSPADITIFDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKM 463
>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex,
amidohydrolase, structural genomics, PSI, protein
structure initiative; HET: KCX ADE; 2.30A {Enterococcus
faecalis} SCOP: b.92.1.8 c.1.9.14
Length = 379
Score = 126 bits (317), Expect = 6e-32
Identities = 80/450 (17%), Positives = 139/450 (30%), Gaps = 87/450 (19%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
LLIKNG+ VN + +I I+ I + + + G+YV G ID H H
Sbjct: 7 LLIKNGQTVNGMPV---EIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVHC 63
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
++ + + + V G TT+ID G + + + A + +
Sbjct: 64 FEKMA-----LYYDYPDEIGVKKGVTTVIDA-----GTTGAENIHEFYDLAQQAKTNVFG 113
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
V I+ W +++ EL D + +
Sbjct: 114 -LVNISKW-----------------------------GIVAQDELAD--LSKVQASLVKK 141
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIM 260
E + + GIK + + + A I + +VHI
Sbjct: 142 AIQELPDFV---------VGIKARMSR--TVIGDNGITPLELAKQIQQENQEIPLMVHI- 189
Query: 261 SKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDE 320
+ + LM+KG T +Q D A + + D
Sbjct: 190 --GSAPPHLDEILALMEKGDVLTHC---FNGKENGILDQATDKIKDFAWQAYNKGVVFDI 244
Query: 321 TTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVV 380
T G + + + +I N NG L+ EK V
Sbjct: 245 GHGTDSFNFHVAETALREGMKAASISTD---------IYIRNRENGPVYDLATTMEKLRV 295
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
G + + + A+ F+L +KG + G DAD+ ++ +A+
Sbjct: 296 VGY-DWPEIIEKVTKAPAENFHL-TQKGTLEIGKDADLTIFTIQAEEK----------TL 343
Query: 441 NIFEGLVCHG----VPEYVIVGGRVCVDEG 466
GL P I+GG++ +EG
Sbjct: 344 TDSNGLTRVAKEQIRPIKTIIGGQIYDNEG 373
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding,
pyrimidine biosynthesis, structural genomics, NPPSFA;
2.42A {Thermus thermophilus}
Length = 426
Score = 123 bits (312), Expect = 1e-30
Identities = 91/477 (19%), Positives = 160/477 (33%), Gaps = 94/477 (19%)
Query: 21 LLIKNGKVVNADKISDL-DIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
+LI+N ++V+A D+ I G I L +V+D G ++ PG +D H H
Sbjct: 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEG----GEAKQVVDGTGCFLAPGFLDLHAH 57
Query: 80 F-ELELMGATSVDDFYHGTKAAVAGGTTTI---------IDFALPRKGESLIKTYESWRQ 129
E G +D + G AAV GG T + +D + + ++
Sbjct: 58 LRE---PGEEVKEDLFSGLLAAVRGGYTDLVSMPNTKPPVDTP---------EAVRALKE 105
Query: 130 KADEKVCCDYALHVG-ITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGE---- 184
KA +T Q + + + G +L+D
Sbjct: 106 KAKALGLAR-LHPAAALT--EKQEGKTLTPAGL----------LREAGAVLLTDDGRTNE 152
Query: 185 ----LYDAFSAIKNLGAIAMVHAENGEIIDKN--TQKLLAA--GIKGPEGHQLSRPEEVE 236
L LG VHAE+ + LA G+ G P E E
Sbjct: 153 DAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDGPLADLLGLPG-------NPPEAE 205
Query: 237 AEAVTRACTIA------NQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLA 290
A + R + + L+V H+ +K + + + + G T
Sbjct: 206 AARIARDLEVLRYALRRSPATPRLHVQHLSTKRGLELVREAK----RAGLPVT------- 254
Query: 291 AAVGTH---ANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTL---LNENALQTTGSDNCT 344
A H + D V +PPLR L L + L +D+
Sbjct: 255 AEATPHHLTLTEEALRTFDPLFKV-APPLR----GEEDREALLEGLLDGTLDAIATDHAP 309
Query: 345 FNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLY 404
+KE P G+ ++ +++ + + ++ V + + ++ L
Sbjct: 310 HTLAEKEKD---LLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLGL- 365
Query: 405 PKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
+ EG++A +V+ + K R + A Y+ + G V G P +V GR+
Sbjct: 366 -PPLHLEEGAEASLVLLSPKE-RPVDPSAFASKARYSPWAGWVLGGWPVLTLVAGRI 420
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 114 bits (285), Expect = 2e-27
Identities = 69/458 (15%), Positives = 130/458 (28%), Gaps = 85/458 (18%)
Query: 18 QNRLLIKNGKVVNADKISDL---DIYIE-NGVIQQLGRNLIVPGGVRVIDAAGSYVIPGG 73
Q +L+ N K V K + DI I +G I +G L P + IDA G+++ PG
Sbjct: 14 QAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGW 73
Query: 74 IDPHTHF---ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQK 130
+D H H ++ S G V G+ +F E +
Sbjct: 74 VDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFH---------GFREYIIEP 124
Query: 131 ADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFS 190
+ E++ L++G G+ + + + + + + ++
Sbjct: 125 SRERIKA--FLNLGS-----------------IGLVACNRVPELRDIKDIDLDRILECYA 165
Query: 191 AIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQV 250
V A V IA +
Sbjct: 166 ENSEHIVGLKVRAS------------------------HVITGSWGVTPVKLGKKIAKIL 201
Query: 251 DCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAH 310
P+ +VH+ A+ + E++ G T G+ + + + A
Sbjct: 202 KVPM-MVHV---GEPPALYDEVLEILGPGDVVT---HCFNGKSGSSIMEDEDLF-NLAER 253
Query: 311 VLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDR 370
+R D + A G + + D H N V D
Sbjct: 254 CAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFS-------ISTDLHGHSMNF--PVWDL 304
Query: 371 LSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTIS 430
+ + K + + E V + N A + L + + G AD V++ +
Sbjct: 305 ATTM-SKLLSVDM-PFENVVEAVTRNPASVIRL-DMENRLDVGQRADFTVFDLVDADLEA 361
Query: 431 AKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNL 468
++ P Y ++G +
Sbjct: 362 TDSNGDVSRLK------RLFEPRYAVIGAEAIAASRYI 393
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 107 bits (270), Expect = 1e-25
Identities = 67/462 (14%), Positives = 125/462 (27%), Gaps = 102/462 (22%)
Query: 22 LIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPG--GVRVIDAAGSYVIPGGIDPHTH 79
L++ + + D+ + NG I + N+ V+D +G + PG ID H H
Sbjct: 11 LLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVH 70
Query: 80 F-ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCD 138
+ G T+++ ++ + + +E+
Sbjct: 71 LIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISA 130
Query: 139 YAL----HVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKN 194
+ L HV + V++++A + + AI +
Sbjct: 131 WMLTGAYHVPSRTITGSVEKDVAII-----------------------DRVIGVKCAISD 167
Query: 195 LGAIAMVHAENGEIIDKNTQKLLAAGIKGP----EGHQLSRPEEVEAEAVTRACTIANQV 250
+ A + ++ L G G G + + I+
Sbjct: 168 HRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDVPISK-- 225
Query: 251 DCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAAH 310
L H+ A E +KG +
Sbjct: 226 ---LLPTHVNRNVPLFEQA---LEFARKGGTIDITSSI---------------------- 257
Query: 311 VLSPPLRPDETTPTHLLTLLNEN--ALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQ 368
P+ P E + + L + G + D GV G +
Sbjct: 258 --DEPVAPAEGIARAVQAGIPLARVTLSSDG-------NGSQPFFDDEGNLTHIGVAGFE 308
Query: 369 DRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRT 428
L + V S + +++ A NL KG I G+DAD++V
Sbjct: 309 TLLETVQVL-VKDYDFSISDALRPLTSSVAGFLNL-TGKGEILPGNDADLLVMTP----- 361
Query: 429 ISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRV 470
+ I E V G++ V +G V
Sbjct: 362 ----------ELRI----------EQVYARGKLMVKDGKACV 383
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 90.4 bits (224), Expect = 1e-19
Identities = 53/271 (19%), Positives = 92/271 (33%), Gaps = 25/271 (9%)
Query: 20 RLLIKN-GKVVNAD----KISDLDIYIENGVIQQLGR--NLIVPGGVRVIDAAGSYVIPG 72
+ +IKN GK+V+ D + I +E+G+I +G + G +IDAAGS V PG
Sbjct: 3 KTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTPG 62
Query: 73 GIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALP-----RKGESLIKTYESW 127
+D H H + +A+ GG TT+I P K + K +
Sbjct: 63 LLDTHVH--VSGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTK---AL 117
Query: 128 RQKADEKVCCDYALHVGITWWSDQVQQEMAE----LCEKHGVNSFKTFMAYKGLYMLSDG 183
+ V + + +++ + E +K GV G +
Sbjct: 118 AITLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKEGVWIVGEVG--LGTIK-NPE 174
Query: 184 ELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRA 243
+ G +H I +T P+ A +V
Sbjct: 175 DAAPMVEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIKTKPDVVSHIN-GGPTAISVQEV 233
Query: 244 CTIANQVDCPLYVVHIMSKAAGDAMAYKRKE 274
I ++ D + +V + D +A + E
Sbjct: 234 DRIMDETDFAMEIVQCGNPKIADYVARRAAE 264
Score = 40.7 bits (95), Expect = 0.001
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 379 VVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHAC 438
+ PE V + + N+ ++ L GVIA G +AD+++ + T +
Sbjct: 296 ASMSDIDPEVAVCMATGNSTAVYGL--NTGVIAPGKEADLIIMD----------TPLGSV 343
Query: 439 DYNIFEGLVCHGVP--EYVIVGGRVCVDEG 466
+ + +P V++ G V +
Sbjct: 344 AEDAMGAIAAGDIPGISVVLIDGEAVVTKS 373
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
isopropylaminohydrolase ATZC, structural genomics,
NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
Length = 403
Score = 84.6 bits (209), Expect = 1e-17
Identities = 62/452 (13%), Positives = 130/452 (28%), Gaps = 75/452 (16%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTHF 80
L+I+N + D + DI I I ++ + IDA G+ V PG +D HTH
Sbjct: 7 LIIRNAYLSEKDSV--YDIGIVGDRIIKIEAKIEGTVK-DEIDAKGNLVSPGFVDAHTH- 62
Query: 81 ELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKADEKVCCDYA 140
+ + + + I+ L + T+E ++
Sbjct: 63 ---MDKSFTSTGERLPKFWSRPYTRDAAIEDGLKYYKNA---THEEIKRHV--IEHAHMQ 114
Query: 141 LHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAM 200
+ G + ++ + + + E + + ++ +A
Sbjct: 115 VLHGTLYTRT-----HVDVDSVAKTKAVEAVL-----------EAKEELKDLIDIQVVAF 158
Query: 201 VHAENGEIIDKNTQKLLAAGIKGPE----GHQLSRPEEVEAEAVTRACTIANQVDCPLYV 256
++G +D ++ L+ + G + E ++ +A + D
Sbjct: 159 A--QSGFFVDLESESLIRKSLDMGCDLVGGVDPATRENNVEGSLDLCFKLAKEYDVD--- 213
Query: 257 VHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAA---AVGTHANQIPCTWHDQAA---- 309
+ G Y L +K G + ++
Sbjct: 214 IDYHIHDIGTVGVYSINRLAQKTIENGYKGRVTTSHAWCFADAPSEWLDEAIPLYKDSGM 273
Query: 310 HVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQD 369
++ T P L N SDN +D + P G +
Sbjct: 274 KFVTCFSSTPPTMPVIKLLEAGINL--GCASDNI----------RDFWV--PFGNGDMVQ 319
Query: 370 RLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTI 429
+ ++ + + ++ A++ + K I G AD+VV N
Sbjct: 320 GALIETQRLELKTNRDLGLIWKMITSEGARVLGI-EKNYGIEVGKKADLVVLN------- 371
Query: 430 SAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
+ + A ++ VI GR+
Sbjct: 372 -SLSPQWA--------IIDQAKRLCVIKNGRI 394
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 81.2 bits (200), Expect = 2e-16
Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 19/224 (8%)
Query: 21 LLIKNGKVVN--ADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
+LI G +V+ ++ DI I +I + +VIDA G+YV PG ID H
Sbjct: 37 VLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHM 96
Query: 79 HFELELMGATSVDDFYHGTKAAVAGGTTTIID--FALPRKGESLIKTYESWRQKADEKVC 136
H E ++ + + G TT + D G ++ + +
Sbjct: 97 HIE-----SSMITPAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAI 151
Query: 137 CDYALHVGITWWSDQVQ-----QEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSA 191
V ++ +A+L + M +G+ +
Sbjct: 152 LLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGVIERDPRMSGIVQAG 211
Query: 192 IKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEV 235
+ + HA + + + +AAG+ H+L E++
Sbjct: 212 LAA-EKLVCGHARG--LKNADLNAFMAAGVSS--DHELVSGEDL 250
Score = 34.6 bits (79), Expect = 0.099
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 36/153 (23%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIF 443
L PE + + NAA+ G+IA G ADIVV+
Sbjct: 317 LKPEWALRAATLNAAQRLGRSDL-GLIAAGRRADIVVFE--------------------- 354
Query: 444 EGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNY--------LPTHTNPPFVYEGQTPEV 495
+ +V+ GR + G + V + LP F+ + Q +V
Sbjct: 355 --DLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLRMANDFLVKSQGAKV 412
Query: 496 DIDHKENHEVIEEIREKLHGLTPNNNHKISAPR 528
+ + + + + + P
Sbjct: 413 RLATIDRPRFTQWGETEA----DVKDGFVVPPE 441
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2
PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C*
1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C*
1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C
...
Length = 567
Score = 77.4 bits (190), Expect = 4e-15
Identities = 70/422 (16%), Positives = 118/422 (27%), Gaps = 73/422 (17%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVI----------QQLGRNLIVPGGVRVIDAAGSYVI 70
L++ N +V+ I DI +++G I Q + + VI A G V
Sbjct: 68 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 127
Query: 71 PGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQK 130
GGID H H+ + + + G V GGT T W
Sbjct: 128 AGGIDTHIHW---ICPQQAEEALVSGVTTMVGGGTGPAAGTHAT------TCTPGPWYIS 178
Query: 131 ADEKVCCDYALHVGITW-WSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAF 189
+ +++G+ + + E GV K + D A
Sbjct: 179 RMLQAADSLPVNIGLLGKGNVSQPDALREQVAA-GVIGLKIHEDWGATPAAID----CAL 233
Query: 190 SAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQ 249
+ + +H++ L A G + A + AC N
Sbjct: 234 TVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPN- 292
Query: 250 VDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQIPCTWHDQAA 309
+ + + E L + H + P D A
Sbjct: 293 --ILPSSTNPTLPYTLNTID-----------------EHLDMLMVCH-HLDPDIAEDVA- 331
Query: 310 HVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELG---------KDSFTHI 360
R T L + A T SD+ + + + K +
Sbjct: 332 ---FAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGAL 388
Query: 361 PNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVV 420
G D V ++++A + N A + + G I G AD+VV
Sbjct: 389 A-EETGDNDNFRV-------------KRYIAKYTINPALTHGIAHEVGSIEVGKLADLVV 434
Query: 421 WN 422
W+
Sbjct: 435 WS 436
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 76.6 bits (188), Expect = 4e-15
Identities = 73/475 (15%), Positives = 138/475 (29%), Gaps = 101/475 (21%)
Query: 16 SSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNL-IVPGGVRVIDAAGSYVIPGGI 74
++ I N ++ + + I++++G I + ++P +DA VIP +
Sbjct: 5 ANNALQTIINARLPGEEGL--WQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPFV 62
Query: 75 DPHTHFELELMGATSVDD--FYHGTKAAVAGGT-TTIIDFALPRKGESLIKTYESWRQKA 131
+PH H D G GT I+ RK T++ +Q+A
Sbjct: 63 EPHIHL-----------DTTQTAGQPNWNQSGTLFEGIERWAERKALL---THDDVKQRA 108
Query: 132 DEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSA 191
+ + GI V + + K E+ +
Sbjct: 109 --WQTLKWQIANGIQHVRTHVD------VSDATLTALKAM-----------LEVKQEVAP 149
Query: 192 IKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRP-----EEVEAEAVTRACTI 246
+L +A + G + N + LL ++ + P E E++ + +
Sbjct: 150 WIDLQIVAFP--QEGILSYPNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFAL 207
Query: 247 ANQVDCPLYVVHI-----MSKAAGDAMAYKRKELMKKGK----HCTLYGET--------- 288
A + D + VH + +A + H T
Sbjct: 208 AQKYDRLID-VHCDEIDDEQSRFVETVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLF 266
Query: 289 --LAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFN 346
L + H Q P R T + N G D
Sbjct: 267 RLLKMSGINFVANPLVNIHLQGRFDTYPKRRG--ITRVKEMLESGINV--CFGHDGV--- 319
Query: 347 KNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPK 406
D + P G + L + + G + + + ++A+ NL +
Sbjct: 320 -------FDPWY--PLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNL--Q 368
Query: 407 KGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRV 461
IA G+ A++++ A+ A L Y + GG+V
Sbjct: 369 DYGIAAGNSANLIILP--------AENGFDA--------LRRQVPVRYSVRGGKV 407
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 72.3 bits (177), Expect = 1e-13
Identities = 81/491 (16%), Positives = 134/491 (27%), Gaps = 111/491 (22%)
Query: 6 PLKKVPIHLQSSQNRLLIKNGKVVNADK-------ISDLDIYIENGVIQQLGRNLIVP-- 56
P + L +N ++ + + + I + NG I G +P
Sbjct: 2 PGNNSAKGTATGNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDD 61
Query: 57 --GGVRVIDAAGSYVIPGGIDPHTH----------FELELMGATSVDDFYHGTKAAVAGG 104
D G ++ P ID HTH FE+ L GAT + A GG
Sbjct: 62 LSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMRLNGATYEEI------AKAGGG 115
Query: 105 TTTIIDFALPRKGESLIKTYESWRQKADE------KVCCDYALHVGITWWSDQVQQEMAE 158
++ + R +DE D L G++ E
Sbjct: 116 ---------------IVSSVRDTRALSDEVLVAQALPRLDTLLSEGVST---------IE 151
Query: 159 LCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEI-IDKNTQKLL 217
+ +G++ + L ++ A + I L
Sbjct: 152 IKSGYGLDIETELKMLRVARRLETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGL 211
Query: 218 AAGIKGPEGHQLSRPEEVEA---EAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKE 274
+ E A + + R A Q P+ +H +
Sbjct: 212 EKAHAEGLADAVDGFCEGIAFSVKEIDRVFAAAQQRGLPV-KLHAEQLSNLGGAELAASY 270
Query: 275 LMKKGKHCTLYGET---LAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLN 331
H ET A GT A +P ++ L PP++ L +
Sbjct: 271 NALSADHLEYLDETGAKALAKAGTVAVLLPGAFYALREKQL-PPVQA----------LRD 319
Query: 332 ENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSP-EKFV 390
A +D N G T + +N + + ++ E
Sbjct: 320 AGAEIALATD---CN-----PGTSPLTSLLLTMN-----MGATLFR------MTVEECLT 360
Query: 391 AVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHG 450
A T NAAK L + G + G AD +W+ + A Y I +
Sbjct: 361 ATT-RNAAKALGLLAETGTLEAGKSADFAIWD--------IERPAELV-YRIGFNPLHA- 409
Query: 451 VPEYVIVGGRV 461
I G+
Sbjct: 410 ----RIFKGQK 416
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 71.2 bits (175), Expect = 2e-13
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 17 SQNRLLIKNGKVVNADK---ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGG 73
S L +NG +++ D + +I IE+G I+++ I VID G ++PG
Sbjct: 2 SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGL 61
Query: 74 IDPHTHFEL------ELMGATSVDDFYHGTKAA---VAGGTTTIID 110
ID H H + +V + G TT+ D
Sbjct: 62 IDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRD 107
Score = 34.3 bits (79), Expect = 0.12
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 390 VAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
+ T +A++ + K G I G+ AD++V +
Sbjct: 353 ASATI-VSAEVLGMQDKLGRIVPGAHADVLVVD 384
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 69.3 bits (170), Expect = 9e-13
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 17 SQNRLLIKNGKVVNADK---ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGG 73
S +++ G V++ ++ + + I+ I ++ + + ID G V+PG
Sbjct: 2 SLTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGF 61
Query: 74 IDPHTHFEL------ELMGATSVDDFYHGTKAA---VAGGTTTIID 110
ID H H ++ ++ G T++ D
Sbjct: 62 IDCHVHVLASNANLGVNATQPNILAAIRSLPILDAMLSRGFTSVRD 107
Score = 34.2 bits (79), Expect = 0.12
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 390 VAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
+ T+ AA+I N+ + GVIA G+ AD+VV +
Sbjct: 350 RSATT-VAAEIVNMQGQLGVIAVGAIADLVVLD 381
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, H
PSI-2; 2.06A {Thermotoga maritima}
Length = 396
Score = 69.3 bits (169), Expect = 1e-12
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 16 SSQNRLLIKNGKVV-NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGI 74
S ++L KN V + D+ + NG ++++G N+ P ++D G ++ PG +
Sbjct: 2 SLSVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIEDPDA-EIVDLTGKFLFPGFV 60
Query: 75 DPHTHFELELMGATSV-DDFYHGTKAAVAG 103
D H+H L G D T
Sbjct: 61 DAHSHIGLFEEGVGYYYSDGNEATDPVTPH 90
Score = 43.1 bits (101), Expect = 2e-04
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
E + + + N AKI L + G I G DAD+VVW+
Sbjct: 327 AKEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVWS 365
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 68.4 bits (168), Expect = 2e-12
Identities = 33/218 (15%), Positives = 61/218 (27%), Gaps = 74/218 (33%)
Query: 21 LLIKNGKVV----------NADKISDLDIYIENGVIQQLGRNLIVPG-GVRVIDAAGSYV 69
L I + ++ ++ + D + I++G+I + +D +
Sbjct: 25 LRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSCQIPATETLDLGQQVL 84
Query: 70 IPGGIDPHTHF----------ELELMG------------ATSVDDFYHGTKAAVA----G 103
+PG ++ H H +L LM GT+ A+A
Sbjct: 85 MPGWVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQS 144
Query: 104 GTTTIID-------------------------FALP-----------RKGESLIKTYESW 127
GTTT D P RK + +
Sbjct: 145 GTTTFADMYFYPQQSGEAALAAGIRAVCFAPVLDFPTNYAQNADEYIRKAIECNDRFNNH 204
Query: 128 RQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGV 165
V + H T SD+ +E+ L ++ +
Sbjct: 205 PMNEQGLVQIGFGPHAPYT-VSDEPLKEITMLSDQLDM 241
Score = 36.4 bits (85), Expect = 0.022
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 11/76 (14%)
Query: 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVP--- 452
A+ + G + G ADI + + ++ +V
Sbjct: 377 GGARALGIDDITGSLKPGKAADIQAIDLNTLSSQPV--------FDPVSHMVYCTKSTQV 428
Query: 453 EYVIVGGRVCVDEGNL 468
+V V GR + G L
Sbjct: 429 SHVWVNGRCLLKNGEL 444
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A
{Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Length = 456
Score = 68.4 bits (168), Expect = 2e-12
Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 37/127 (29%)
Query: 21 LLIKNGKVV-----NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID 75
+LI+ V ++ D DI I+ I +G++L R ID G +PG I+
Sbjct: 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLIN 61
Query: 76 PHTHF------------ELELM----------------GATSVDDFYHGTKAAVA----G 103
H H + + G D +A + G
Sbjct: 62 SHQHLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLG 121
Query: 104 GTTTIID 110
G TT+ D
Sbjct: 122 GITTVAD 128
Score = 37.2 bits (87), Expect = 0.012
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
LS + + + + +A+ P GV+ EG ADI W + +
Sbjct: 355 EKWLSARELLRMATRGSAECLGR-PDLGVLEEGRAADIACWRLDGVDRVGV--------H 405
Query: 441 NIFEGLVCHGVP---EYVIVGGRVCVDEGNL 468
+ GL+ G+ V+V G+V V+
Sbjct: 406 DPAIGLIMTGLSDRASLVVVNGQVLVENERP 436
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct
phosphate, carbohydrate metabolism, hydrolase; HET: F6P;
2.53A {Vibrio cholerae} PDB: 3egj_A*
Length = 381
Score = 67.6 bits (166), Expect = 3e-12
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 17 SQNRLLIKNGKVVNADK-ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGID 75
S + N K+ + + + I I+ + +P + V+D G+ + PG ID
Sbjct: 1 SNAMYALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFID 60
Query: 76 PHTH--FELELMGATSVDDFYHGTKAAVAGGTTTI 108
+ + + + KA + G T+
Sbjct: 61 LQLNGCGGVMFNDEITAETIDTMHKANLKSGCTSF 95
Score = 43.7 bits (104), Expect = 1e-04
Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN--YKAKRTISA 431
++ ++ + + + AK + K G I +G A++ V++ + K T+
Sbjct: 326 IALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRDFNVKATVVN 375
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 68.0 bits (167), Expect = 3e-12
Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 69/211 (32%)
Query: 21 LLIKNGKVVNADK----ISDLDIYIENGVIQQLGRNLIVPG---GVRVIDAAGSYVIPGG 73
LLI+ G VV + + D + + NGVI + R + + ++PG
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGL 75
Query: 74 IDPHTHF----------ELELMG------------ATSVDDFYHGTKAAVA----GGTTT 107
++ HTH +L LM + GT A+A GGTT
Sbjct: 76 VNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTC 135
Query: 108 IID------------------FALPRKGESLIKTYESWRQKADE------KVCCDYALHV 143
+ + + G +I +W DE ++ +
Sbjct: 136 VNENYFFADVQAAVYKQHGFRALV---GAVIIDFPTAWASSDDEYFARAGELHDQWRDDP 192
Query: 144 GITWW---------SDQVQQEMAELCEKHGV 165
I+ +D + + L ++ +
Sbjct: 193 LISTAFAPHAPYTVNDANFERVRMLADQLDM 223
Score = 36.4 bits (85), Expect = 0.023
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVP--- 452
A+ + G I G AD+V + A T +++ L+
Sbjct: 359 GGARALGFGDRIGSIEVGKQADLVCVDLSALETQPL--------HHVLSQLIYAAGRHQV 410
Query: 453 EYVIVGGRVCVDEGNL 468
V + G+ + + L
Sbjct: 411 TDVWIAGKPKLVQREL 426
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics,
NYSGXRC, target 9236E, PSI-2, protein structure
initiative; 2.20A {Unidentified} PDB: 3hpa_A
Length = 479
Score = 68.0 bits (167), Expect = 3e-12
Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 32/138 (23%)
Query: 5 TPLKKVPIHLQSSQNRLLIKNGKVV-----NADKISDLDIYIENGVIQQLGRNL-IVPGG 58
+ P S LL+K+ V+ ++ D +YIE+ I +G + +
Sbjct: 15 HAGARAPNTSSSRPKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETA 74
Query: 59 VRVIDAAGSYVIPGGIDPHTHF------------ELELM----------GATSVDDFYHG 96
V+D G VIPG ++ H H EL + +
Sbjct: 75 DEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIWAHLTPEMIEVS 134
Query: 97 TKAAVA----GGTTTIID 110
T A+A G TT D
Sbjct: 135 TLTAMAELLQSGCTTSSD 152
Score = 36.8 bits (86), Expect = 0.018
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
P ++ + + + + AK+ N G + G AD ++ + A A +
Sbjct: 374 PDAMTAREALEIATLGGAKVLNR-DDIGALKPGMAADFAAFD------LRQPLFAGAL-H 425
Query: 441 NIFEGLV-CHGVP-EYVIVGGRVCVDEGNL 468
+ LV C Y +V G+V V EG L
Sbjct: 426 DPVAALVFCAPSQTAYTVVNGKVVVREGRL 455
>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II,
amidohydrolase, sargasso SEA, enviro sample, structural
genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9
Length = 492
Score = 67.7 bits (166), Expect = 4e-12
Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 37/132 (28%)
Query: 15 QSSQNRLLIKNGKVV---------NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAA 65
+Q LI+N + + ++ DI I I +G PG ++DA
Sbjct: 6 YDTQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRPG-ETIVDAT 64
Query: 66 GSYVIPGGIDPHTHF------------ELELM-----------GATSVDDFYHGTKAAVA 102
+ P ++ H H + L F + +
Sbjct: 65 DCVIYPAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLI 124
Query: 103 ----GGTTTIID 110
G T+ D
Sbjct: 125 ELARSGCATVAD 136
Score = 37.3 bits (87), Expect = 0.013
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 381 PGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY 440
G S + + + A++ L + G +A G ADI V+ R +
Sbjct: 378 AGAASIAEVIHWGTAGGARVMGL-DEVGKVAVGYAADIAVYRLDDPRYFGL--------H 428
Query: 441 NIFEGLVCHGVP---EYVIVGGRVCVDEGNL 468
+ G V G + G+ V + +
Sbjct: 429 DPAIGPVASGGRPSVMALFSAGKRVVVDDLI 459
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 66.8 bits (164), Expect = 6e-12
Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 68/217 (31%)
Query: 14 LQSSQNRLLIKNGKVVNADK----ISDLDIYIENGVIQQLGRNLIVPG--GVRVIDAAGS 67
+ S+ +I ++ + + + I I +G I + G ++
Sbjct: 1 MPQSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDH 60
Query: 68 YVIPGGIDPHTHF----------ELELMG------------ATSVDDFYHGTKAAVA--- 102
++PG I+ H H + LM D + G+ A+
Sbjct: 61 VLMPGLINLHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMI 120
Query: 103 -GGTTTIID------------------FALPRKGESLIKTYESWRQKADEKVCCDYALHV 143
GGTTTI D + G S+++ ++ AD+ + A
Sbjct: 121 RGGTTTINDMYFYNAAVARAGLASGMRTFV---GCSILEFPTNYASNADDYIAKGMAERS 177
Query: 144 G------ITWW---------SDQVQQEMAELCEKHGV 165
+T+ SD +++ L E+ +
Sbjct: 178 QFLGEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDM 214
Score = 37.2 bits (87), Expect = 0.015
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVP--- 452
N A+ + K G + G AD++ + T A ++ +V
Sbjct: 350 NGARALGIADKVGSVKVGKQADLIALDLAQLETAPA--------FDPISHVVYAAGREQV 401
Query: 453 EYVIVGGRVCVDEGNL 468
+V V GR + E L
Sbjct: 402 SHVWVKGRALMRERKL 417
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 66.2 bits (162), Expect = 9e-12
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 17 SQNRLLIKNGKVVN--ADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGI 74
+ LIK+ ++ +I D+ I NG I ++G+ I VI +IPG +
Sbjct: 4 TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGK--INTKDATVISIPDLILIPGLM 61
Query: 75 DPHTHFEL------ELMGATSVDDFYHGTKAA---VAGGTTTIID 110
D H H E + +S G A + G TT+ +
Sbjct: 62 DSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRN 106
Score = 31.5 bits (72), Expect = 0.73
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 390 VAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
A T A +F + G I EG DADIV
Sbjct: 345 QASTI-KTATLFGI-ENIGQIKEGFDADIVGVI 375
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO
PSI-biology, NEW YORK structural genomics research
consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Length = 451
Score = 66.4 bits (163), Expect = 1e-11
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 32/122 (26%)
Query: 21 LLIKNGKVVNADK----ISDLDIYIENGVIQQLGRN--LIVPGGVRVIDAAGSYVIPGGI 74
LL+ +V + + D + I +G I + + G + + G + PG +
Sbjct: 10 LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLV 69
Query: 75 DPHTHF----------ELELMG------------ATSVDDFYHGTKAAVA----GGTTTI 108
+ H H +L LM S D GT+ A+A GG T
Sbjct: 70 NAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCF 129
Query: 109 ID 110
D
Sbjct: 130 SD 131
Score = 36.8 bits (86), Expect = 0.017
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVP--- 452
N A+ L G + G AD+V ++ Y+ L+
Sbjct: 352 NGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPV--------YDPVSQLIYASGRDCV 403
Query: 453 EYVIVGGRVCVDEGNL 468
+V VGGR +D+G L
Sbjct: 404 RHVWVGGRQLLDDGRL 419
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 65.3 bits (160), Expect = 2e-11
Identities = 24/204 (11%), Positives = 53/204 (25%), Gaps = 68/204 (33%)
Query: 21 LLIKNGKVVNADK--ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHT 78
++I N ++ + IENG I+++ + +D +G V+P + HT
Sbjct: 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQG----EVKVDLDLSGKLVMPALFNTHT 56
Query: 79 HF----------ELELM-----------GATSVDDFYHGTKAAVA----GGTTTIID--- 110
H +L + Y+GT A G +D
Sbjct: 57 HAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYF 116
Query: 111 -----------------------------FALPRKGESLIKTYESWRQKADEKVCCDYAL 141
+ L + + ++ +
Sbjct: 117 HEEWIAKAVRDFGMRALLTRGLVDSNGDDGGRLEENLKLYNEW----NGFEGRIFVGFGP 172
Query: 142 HVGITWWSDQVQQEMAELCEKHGV 165
H S++ + + + +
Sbjct: 173 HSPYL-CSEEYLKRVFDTAKSLNA 195
Score = 37.5 bits (88), Expect = 0.010
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLV--CHGVPE 453
+ A+ K G I EG +AD+VV + NI LV G
Sbjct: 320 DGAQAMGF--KSGKIEEGWNADLVVIDLDLPEMFPV--------QNIKNHLVHAFSGEVF 369
Query: 454 YVIVGGRVCVDEGNL 468
+V G+ +G
Sbjct: 370 ATMVAGKWIYFDGEY 384
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 2e-11
Identities = 85/494 (17%), Positives = 147/494 (29%), Gaps = 134/494 (27%)
Query: 12 IH-----LQSSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAG 66
IH L + L+K +++ YI R + A G
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKN--------YIT--ARIMAKRPFDKKSNSALFRAVG 150
Query: 67 S-----YVIPGGI-DPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFA------LP 114
I GG + +FE EL D Y V +I F+ L
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFE-ELR------DLYQTYHVLVG----DLIKFSAETLSELI 199
Query: 115 RKGESLIKTY------ESWRQKADEKVCCDYALHVGITWWSDQVQQEMAE---LCEKHGV 165
R K + W + DY L + I+ V Q +A + G
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLG- 257
Query: 166 NSFKTFMAYKGLYMLSDGELYDAFSAIKNLG-----AIAMVHAENGEIIDKNTQKLLAA- 219
+ GEL A+A+ ++ E + +K +
Sbjct: 258 --------------FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 220 -GIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKK 278
I G ++ + + + V P+ + +++ K +
Sbjct: 304 FFI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 279 GKH-------------CT-----LYG-----ETLAAAVGTHANQIPCTWHDQAAHVLSP- 314
GK + LYG A G ++IP + S
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP---FSERKLKFSNR 419
Query: 315 --PLRPDETTP--THLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIP-----NGVN 365
P+ +P +HLL ++ + +N +F N K++ IP +G +
Sbjct: 420 FLPV----ASPFHSHLLVPASDLINKDLVKNNVSF--NAKDIQ------IPVYDTFDGSD 467
Query: 366 GVQDRLSVIWEKGVVPGILS-PEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYK 424
++ I E+ +V I+ P K+ T A I + P G + + V ++
Sbjct: 468 -LRVLSGSISER-IVDCIIRLPVKWETTTQFKATHILDFGP-------GGASGLGVLTHR 518
Query: 425 AK-----RTISAKT 433
K R I A T
Sbjct: 519 NKDGTGVRVIVAGT 532
Score = 40.8 bits (95), Expect = 0.002
Identities = 29/154 (18%), Positives = 45/154 (29%), Gaps = 70/154 (45%)
Query: 463 VDEGNLRV-AQ--GQGNYLPTHTNPPF-----VYEGQTPEVDIDHKENHEVIEEIREKL- 513
V EGN ++ A GQGN T+ F +Y+ V ++I+ E L
Sbjct: 149 VGEGNAQLVAIFGGQGN-----TDDYFEELRDLYQTYHVLVG-------DLIKFSAETLS 196
Query: 514 --------------HGL-----------TPNNNHKISAPRS-P--------SYSSTSSVY 539
GL TP+ ++ +S P S P Y T+ +
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 540 GDADYGHNQIHTGKGMRPEGQRDLQSSSMSVCGE 573
G P R + +
Sbjct: 257 --------------GFTPGELRS-YLKGATGHSQ 275
Score = 32.3 bits (73), Expect = 0.64
Identities = 33/163 (20%), Positives = 53/163 (32%), Gaps = 57/163 (34%)
Query: 174 YKGLYMLSDG-ELYDAFSAIKNLGAIAMVHAEN--G----EIIDKNTQKL--LAAGIKG- 223
+G M G +LY A +++ A H ++ G +I+ N L G KG
Sbjct: 1628 EQG--M---GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 224 --------------PEGHQLSRPEEVEAEAVTRACTI----------AN-QVDCP-LYVV 257
+G + E + + T Q P L ++
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ---PALTLM 1739
Query: 258 HIMSKAAGDAMAYKRKELMKKGK----HCTLYGE-T-LAAAVG 294
KAA + + K K L+ H +L GE LA+
Sbjct: 1740 ---EKAAFEDL--KSKGLIPADATFAGH-SL-GEYAALASLAD 1775
Score = 31.6 bits (71), Expect = 1.1
Identities = 55/324 (16%), Positives = 92/324 (28%), Gaps = 125/324 (38%)
Query: 261 SKAAGDAMA---YKR----KELMKKGKHCTL--YGETLAAAVGTHANQIPCTWH-----D 306
S+ G M YK +++ + + YG ++ V N + T H
Sbjct: 1626 SQEQG--MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN--NPVNLTIHFGGEKG 1681
Query: 307 QAAHVLSPPLR----PDETTPT-HLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIP 361
+ + D T + +NE+ S + TF + L FT
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEH------STSYTFRSEKGLLSATQFT--- 1732
Query: 362 NGVNGVQDRL--------SVIWEKGVVP----------GILSPEKFVAVTSTNAAKIFNL 403
Q L + KG++P G E + A+ S A + ++
Sbjct: 1733 ------QPALTLMEKAAFEDLKSKGLIPADATFAGHSLG----E-YAALAS--LADVMSI 1779
Query: 404 YPKKGVIAEGSDA-DIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGV----PEYVIVG 458
++V R T A + G +G+ P V
Sbjct: 1780 ----------ESLVEVV-----FYR---GMTMQVAVPRDE-LGRSNYGMIAINPGRVAAS 1820
Query: 459 G-----RVCVDEGNLRVAQGQG------NYLPTHTNPP---FVYEGQTPEVD-------- 496
+ V+ RV + G NY N +V G +D
Sbjct: 1821 FSQEALQYVVE----RVGKRTGWLVEIVNY-----NVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 497 -----IDHKE-NHEV-IEEIREKL 513
ID E + +EE+ L
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEGHL 1895
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 63.9 bits (156), Expect = 4e-11
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 14/110 (12%)
Query: 15 QSSQNRLLIKNGKVVNADK---ISDLDIYIENGVIQQLGRNLI-VPGGVRVIDAAGSYVI 70
++ LI GK+++ S + I I+ +I + + I ID V+
Sbjct: 3 LDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVL 62
Query: 71 PGGIDPHTHFELE-------LMGATSVDDFYHGTKAA---VAGGTTTIID 110
PG +D H HF E + T+ A G TT+
Sbjct: 63 PGLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQ 112
Score = 34.3 bits (79), Expect = 0.100
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 390 VAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
+ T AK+ + K G I G AD++
Sbjct: 356 QSATM-ETAKLLRIEDKLGSIESGKLADLIAVK 387
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 63.5 bits (154), Expect = 8e-11
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 21 LLIKNGKVV----NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDP 76
I G ++ + +D + + +G I +G L DA+G V PG ID
Sbjct: 9 FKITGGWIIDGTGAPRRRAD--LGVRDGRIAAIG-ELGAHPARHAWDASGKIVAPGFIDV 65
Query: 77 HTHFELELM 85
H H +L +
Sbjct: 66 HGHDDLMFV 74
Score = 46.9 bits (111), Expect = 1e-05
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAK-THAHACDY 440
+++ E+ VA + A++F ++GV+ G+ AD+VV++ T++ + T
Sbjct: 393 RLMTLEQAVARMTALPARVFGF-AERGVLQPGAWADVVVFDPD---TVADRATWDEPTLA 448
Query: 441 NIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQ 474
G+ V+V G + GQ
Sbjct: 449 -------SVGI-AGVLVNGAEVFPQPPADGRPGQ 474
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 62.6 bits (153), Expect = 1e-10
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 23 IKNGKVVNADKI-SDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH-- 79
+ G++ + D + I +G+I+ + +P + G+ + PG ID +
Sbjct: 4 LTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGC 63
Query: 80 FELELMGAT---SVDDFYHGTKAAVAGGTTTI 108
++ SV+ KA G T
Sbjct: 64 GGVQFNDTAEAVSVETLEIMQKANEKSGCTNY 95
Score = 44.1 bits (105), Expect = 9e-05
Identities = 8/50 (16%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 384 LSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN--YKAKRTISA 431
++ ++ + + + A+ + + G +A G A++ + +K +TI
Sbjct: 326 IALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVN 375
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 62.3 bits (152), Expect = 2e-10
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 14/106 (13%)
Query: 19 NRLLIKNGKVVNADK---ISDLDIYIENGVIQQLGRNLI-VPGGVRVIDAAGSYVIPGGI 74
+ ++++ + + + + +G I +G+ VP G +D G ++PG I
Sbjct: 2 EIKAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGLI 61
Query: 75 DPHTHF-------ELELMGATSVDDFYHGTKAA---VAGGTTTIID 110
D H H + + T A + G TT+ +
Sbjct: 62 DMHVHLDSLAEVGGYNSLEYSDRFWSVVQTANAKKTLEAGFTTVRN 107
Score = 34.2 bits (79), Expect = 0.11
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 390 VAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
+ T AA+ G +A G D++
Sbjct: 346 QSATL-TAAEALGRSKDVGQVAVGRYGDMIAVA 377
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N-
acetyleglucosamine-6-phosphate, carbohydrate metabolism,
hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
Length = 396
Score = 62.3 bits (152), Expect = 2e-10
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 19 NRLLIKNGKVVNADK-ISDLDIYIENGVIQQLGR-NLIVPGGVRVIDAAGSYVIPGGIDP 76
LLIK+ +V ++ I + + I +G I + P + A S ++PG ID
Sbjct: 3 ESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMIDI 62
Query: 77 HTHFELELMGATSVDDFYHGTKAAVAG--------GTTTI 108
H H G D + + + GTT+
Sbjct: 63 HIH------GGYGA-DTMDASFSTLDIMSSRLPEEGTTSF 95
Score = 44.2 bits (105), Expect = 7e-05
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN--YKAKRTISA 431
S +TS NAAK ++ +KG + G DAD+V+ + + TI
Sbjct: 332 TNCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSDCEVILTICR 383
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 61.7 bits (150), Expect = 2e-10
Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 52/147 (35%)
Query: 16 SSQNRLLIKNGKVV---------------NADKISDLDIYIENGVIQQLGRNLIVPG--G 58
Q ++ N + + I D + I I G+ G
Sbjct: 2 PKQIDTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYEA 61
Query: 59 VRVIDAAGSYVIPGGIDPHTH----------FELELMGAT-------------------- 88
+ID +G V PG +DPHTH L+L G +
Sbjct: 62 DEIIDCSGRLVTPGLVDPHTHLVFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRA 121
Query: 89 -SVDDFYHGTKAAVA----GGTTTIID 110
S ++ + GTTT
Sbjct: 122 ASEEELLQKAHFHLQRMLSYGTTTAEV 148
Score = 38.6 bits (90), Expect = 0.005
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 384 LSP-EKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNI 442
++ E + AVT NAA + G + G AD+V+W A + + Y+
Sbjct: 348 MTAEEIWHAVT-VNAAYAIGKGEEAGQLKAGRSADLVIWQ--------APNYMYIP-YHY 397
Query: 443 FEGLVCHGVPEYVIVGGRVCVD 464
V V+ G + V+
Sbjct: 398 GVNHVHQ-----VMKNGTIVVN 414
>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio
initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}
Length = 427
Score = 61.5 bits (150), Expect = 3e-10
Identities = 23/205 (11%), Positives = 54/205 (26%), Gaps = 67/205 (32%)
Query: 22 LIKNGKVVNADK-ISDLDIYIENGVIQQLGRNLIVP---GGVRVIDAAGSYVIPGGIDPH 77
+IK ++ I D + + I+ + + V S ++PG +PH
Sbjct: 3 IIKPFAILTPQTIIQDKAVAFD-KKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPH 61
Query: 78 THFE----------LELMG----------ATSVDDFYHGTKAAVA----GGTTT------ 107
H E + + + ++ GTT
Sbjct: 62 LHLEFSANKATLQYGDFIPWLYSVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAISS 121
Query: 108 --------------------IIDFALPRKGESL---IKTYESWRQKADEKVCCDYALH-- 142
+I ++ + ++ +E+ A+H
Sbjct: 122 YGEDLQACIDSALKVVYFNEVIGSNAATADVMYASFLERFHQSKKHENERFKAAVAIHSP 181
Query: 143 --VGITWWSDQVQQEMAELCEKHGV 165
V + + ++ +K+G
Sbjct: 182 YSV-----HYILAKRALDIAKKYGS 201
Score = 40.3 bits (95), Expect = 0.001
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACD-YNIFEGLVCHGV-PE 453
+ G IA G DAD+ + + + +++ ++ H P+
Sbjct: 346 AGYDALGF--EGGEIAVGKDADMQLID----------LPEGLTNVEDLYLHVILHTTKPK 393
Query: 454 YVIVGGRVCVDEGNL 468
V + G V E
Sbjct: 394 KVYIQGEEHVREAEN 408
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 58.9 bits (142), Expect = 3e-09
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 21 LLIKNGKVV----NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDP 76
++ G V+ +++D + + I +G +L R ID AG V PG ID
Sbjct: 23 YILSGGTVIDGTNAPGRLAD--VGVRGDRIAAVG-DLSASSARRRIDVAGKVVSPGFIDS 79
Query: 77 HTHFELELMGATSVDDFYHGTKAAVAGGTTTIID 110
HTH + L+ ++ G TT++
Sbjct: 80 HTHDDNYLL-----KHRDM--TPKISQGVTTVVT 106
Score = 46.1 bits (109), Expect = 2e-05
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAK-THAHACDY 440
G+ E V + A F L ++G + G AD+VV++ T++ T H +
Sbjct: 407 GLFPLETAVWKMTGLTAAKFGL-AERGQVQPGYYADLVVFDPA---TVADSATFEHPTER 462
Query: 441 NIFEGLVCHGVPEYVIVGGRVCVDEGNL 468
G+ V V G ++ +
Sbjct: 463 -------AAGI-HSVYVNGAAVWEDQSF 482
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 56.8 bits (137), Expect = 1e-08
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 26/146 (17%)
Query: 21 LLIKNGKVVNADK-------ISDLDIYIENGVIQQLG--RNLIVPGGVRVIDAAGSYVIP 71
+ N + + + G I L ++L P D G V P
Sbjct: 7 RVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTP 66
Query: 72 GGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTIIDFALPRKGESLIKTYESWRQKA 131
G ID HTH + + ++F G I RKG +I T + R +
Sbjct: 67 GLIDCHTHL---IFAGSRAEEFE----LRQKGVPYAEI----ARKGGGIISTVRATRAAS 115
Query: 132 DE------KVCCDYALHVGITWWSDQ 151
++ + G+T +
Sbjct: 116 EDQLFELALPRVKSLIREGVTTVEIK 141
Score = 41.4 bits (97), Expect = 7e-04
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 24/99 (24%)
Query: 384 LSP-EKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNI 442
L+P E VT +AA+ + G + G AD +VWN A Y I
Sbjct: 341 LTPVEAMAGVT-RHAARALGEQEQLGQLRVGMLADFLVWN--------CGHPAELS-YLI 390
Query: 443 FEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNYLPTH 481
+ +V G G+G++ H
Sbjct: 391 GVDQLVS-----RVVNGEE--------TLHGEGHHHHHH 416
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 54.0 bits (130), Expect = 8e-08
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 15 QSSQNRLLIKNGKVVNADK----ISDLDIYI-ENGVIQQLGRNLI--VPGGVRVIDAAGS 67
+ + +V DK + ++ I + +G I+Q+ ++ +P +D G
Sbjct: 8 NPIVEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGK 67
Query: 68 YVIPGGIDPHTHFELE 83
V+PG I+ HTH +
Sbjct: 68 IVMPGLINAHTHLFSQ 83
Score = 35.1 bits (81), Expect = 0.054
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 390 VAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN 422
A T+ A I + + G + G AD++V N
Sbjct: 376 HAATA-VNASILGVDAETGSLEVGKSADLLVLN 407
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 54.2 bits (131), Expect = 8e-08
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 21 LLIKNGKVVNADKISDL--DIYIENGVIQQLG-----RNLIVPGGVRVIDAAGSYVIPGG 73
+ NG + + + I N + G + G +ID G +V+P
Sbjct: 38 KALINGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAF 97
Query: 74 IDPHTHF--------ELELMGATSVDD 92
D H H ++L G S+++
Sbjct: 98 FDSHLHLDELGMSLEMVDLRGVKSMEE 124
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 52.4 bits (126), Expect = 2e-07
Identities = 22/221 (9%), Positives = 55/221 (24%), Gaps = 61/221 (27%)
Query: 1 MSNNTPLKKVPIHLQSSQNRLLIKNGKV-VNADKISDLDIYIENGVIQQLGRNLIVP--G 57
M+ + + + RLL + S + + + G +
Sbjct: 20 MTFSEATTPDALTPDAHTPRLLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQY 79
Query: 58 GVRVIDAAGSYVIPGGIDPHTHFELELMGATSVD---------------DFYHGTKAAVA 102
+ AG+ + P ++ HTH ++ ++ +A
Sbjct: 80 PHAAEERAGAVIAPPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGAD 139
Query: 103 ----GGTTT---------------------------IIDFALPRKGESLIKT---YESWR 128
G +++ + E E WR
Sbjct: 140 TLTRLGAGGVGDIVWAPEVMDALLAREDLSGTLYFEVLNPFPDKADEVFAAARTHLERWR 199
Query: 129 QKADEKVCCDYALH----VGITWWSDQVQQEMAELCEKHGV 165
+ + + H V S ++ + +++ G+
Sbjct: 200 RLERPGLRLGLSPHTPFTV-----SHRLMRLLSDYAAGEGL 235
>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics,
TM0814, JCSG, PSI, protein structure initiative; 2.50A
{Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10
Length = 376
Score = 51.8 bits (125), Expect = 3e-07
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 22/103 (21%)
Query: 12 IHLQSSQNRLLIKNGKVVN-ADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVI 70
+ + ++++ +V+ D D+ IE G I ++ + ++
Sbjct: 4 DKIHHHHHHMIVEKVLIVDPIDGEFTGDVEIEEGKIVKVEK---------RECIPRGVLM 54
Query: 71 PGGIDPHTHFELELMGATSVDDFYHGTKAAVA-----GGTTTI 108
PG +DPH H G D + + + G TT
Sbjct: 55 PGFVDPHIH------GVVGA-DTMNCDFSEMEEFLYSQGVTTF 90
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 382 GILSPEKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWN--YKAKRTISA 431
S + V+S N+ L +G IAEG+ AD+V+ + TI
Sbjct: 318 TGCSITELAKVSSYNSCVELGLD-DRGRIAEGTRADLVLLDEDLNVVMTIKE 368
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 51.1 bits (123), Expect = 5e-07
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 38/133 (28%)
Query: 7 LKKVPIHLQSSQNRLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLI-VPGGVRVIDAA 65
K I ++S ++K+ I + +G I + NL G +ID
Sbjct: 13 FKGNLIFTKTSDKFTIMKDS-----------YIVVIDGKIASVSSNLPDKYKGNPIIDFR 61
Query: 66 GSYVIPGGIDPHTHF----------ELELM-----------GATSVDDFYH-GTKAAVA- 102
+ +IPG D H H + EL+ D+ +
Sbjct: 62 NNIIIPGMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKD 121
Query: 103 ---GGTTTIIDFA 112
GTT + FA
Sbjct: 122 LIKNGTTRVALFA 134
Score = 31.0 bits (71), Expect = 1.3
Identities = 14/74 (18%), Positives = 17/74 (22%), Gaps = 14/74 (18%)
Query: 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACD-YNIFEGLVCHGVP-- 452
F K G EG D D +V N + D E + G
Sbjct: 366 KGGSFFG---KVGSFEEGYDFDALVINDSN-------LYPEDYDLTERLERFIYLGDDRN 415
Query: 453 -EYVIVGGRVCVDE 465
V G
Sbjct: 416 IMKRYVCGNEIFGP 429
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 47.4 bits (113), Expect = 1e-05
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 28/107 (26%)
Query: 34 ISDLDIYIENGVIQQLGRNLIVPG---GVRVIDAAGSYVIPGGIDPHTHF---------E 81
D + + +GVI+ G + GV + ++PG ID H H
Sbjct: 33 HQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGAYG 92
Query: 82 LELMG------------ATSVDDFYHGTKAAVA----GGTTTIIDFA 112
+L+ + G K + GTTT F
Sbjct: 93 EQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFT 139
Score = 28.1 bits (63), Expect = 9.9
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDY----------NIFEG 445
A+ + K G G +AD V + + + D ++
Sbjct: 384 GGAEGLYIDDKLGNFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASMLFA 443
Query: 446 LVCHGVP---EYVIVGGRVCVDEG 466
++ G + V G+ +
Sbjct: 444 VMMVGDDRCVDETWVMGKRLYKKS 467
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 47.3 bits (113), Expect = 1e-05
Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 34/131 (25%)
Query: 11 PIHLQSSQNRLLIKNGKVVNADK-ISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYV 69
P + ++ I + + D ++ I I GVI + ++ D S V
Sbjct: 2 PGSMSDQSSQHFIHARQALLPDGWAENVRIGIAGGVICSIETGVLAGP----DDERQSVV 57
Query: 70 IPGGIDPHTHFE---------------------LELM----GATSVDDFYHGTKAAVA-- 102
+ G + H+H E+M + +
Sbjct: 58 VAGMANLHSHAFQYGMAGLAERRGPSADSFWSWREIMYKFALTMTPEQAEAVALRLYVDM 117
Query: 103 --GGTTTIIDF 111
G T + +F
Sbjct: 118 LEAGFTRVGEF 128
Score = 34.6 bits (80), Expect = 0.086
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 408 GVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLV--CHGVPEYVIVGGRVCVDE 465
+ +G+ AD V + + HA + +G + V V G V+
Sbjct: 385 DGLKKGASADFVSLD--------VERLPHAKGDVVLDGWIFAGRAHVCDVWVRGVKQVEG 436
Query: 466 GNLR 469
G R
Sbjct: 437 GRHR 440
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group.,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacillus thuringiensis
serovarkonkukian}
Length = 81
Score = 42.1 bits (100), Expect = 2e-05
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 21 LLIKNGKVVNADKISDLD--IYIENGVIQQLGRNLIVP---GGVRVIDAAGSYVIPGGID 75
+++ NGK+ D I I +G+I +G + ++ + ID IPG D
Sbjct: 6 MILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLND 65
Query: 76 PHTHFELELMGA 87
H H + G
Sbjct: 66 SHIHV---IRGL 74
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 41.8 bits (98), Expect = 7e-04
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 23/101 (22%)
Query: 21 LLIKNGKVVNADKISDLDIYIENGVIQQLGR------------NLIVPGGVRVIDAAGSY 68
+I N +++ I DI I++G+I +G+ N+I+ VI G
Sbjct: 339 TVITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLI 398
Query: 69 VIPGGIDPHTHFELELMGATSVDDFYHGTKAAVAGGTTTII 109
V G ID H H+ + A++ G TT++
Sbjct: 399 VTAGAIDCHVHYICPQL-----------VYEAISSGITTLV 428
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family,
N-formimino-L-glutamate iminohydrolas
guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas
aeruginosa} PDB: 3mdw_A*
Length = 453
Score = 40.7 bits (96), Expect = 0.001
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 38/121 (31%)
Query: 20 RLLIKNGKVVNADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYVIPGGIDPHTH 79
R L+ G N +I +GV+ ++ + + G V+PG + H+H
Sbjct: 8 RALLPEGWARNVR----FEI-SADGVLAEIRPD----ANADGAERLGGAVLPGMPNLHSH 58
Query: 80 F---------------ELELM----------GATSVDDFYHGTKAAVA----GGTTTIID 110
S + G T + +
Sbjct: 59 AFQRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAE 118
Query: 111 F 111
F
Sbjct: 119 F 119
Score = 34.6 bits (80), Expect = 0.082
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 408 GVIAEGSDADIVVWNYKAKRTISAKTHAHACDYNIFEGLV--CHGVP-EYVIVGGRVCVD 464
G +A G AD++V + + A A + + V+V GR V
Sbjct: 377 GSLAVGRRADLLVLD------GNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVR 430
Query: 465 EGNL 468
+G
Sbjct: 431 DGRH 434
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 0.001
Identities = 61/472 (12%), Positives = 120/472 (25%), Gaps = 177/472 (37%)
Query: 206 GEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAG 265
E++ N K L + IK E Q S + E R NQV V +
Sbjct: 84 EEVLRIN-YKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRL------ 134
Query: 266 DAMAYKRKEL--MKKGKHCTLYG------ETLAAAV-------GTHANQIPCTWHDQAAH 310
R+ L ++ K+ + G +A V +I W
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FW------ 186
Query: 311 VLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDR 370
L+ L+ + +P +L +L + Q + N D ++I ++ +Q
Sbjct: 187 -LN--LK-NCNSPETVLEMLQKLLYQ--------IDPNWTSRS-DHSSNIKLRIHSIQAE 233
Query: 371 LSV----------------IWEKGVVPGILSPEKF-----VAVTSTNA------------ 397
L + F + +T+
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAW------NAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 398 --------------------AKIFNLYPKK-------------GVIAEGSDADIVVWNYK 424
K + P+ +IAE + W+
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 425 AKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQGNY-----LP 479
T I E ++ L A+ + + P
Sbjct: 348 KHVNCDKLTT-------IIE----------------SSLN--VLEPAEYRKMFDRLSVFP 382
Query: 480 THTN-PPFVYE-------GQTPEVDIDHKENHEVIEEIREK----LHGL-----TPNNN- 521
+ P + V ++ + ++E+ ++ + + N
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 522 ---HKI-----SAPRSPSYSSTSSVYGDADYGHNQI--HTGKGMRPEGQRDL 563
H+ + P++ Y D Y ++ I H K + + L
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHL-KNIEHPERMTL 492
Score = 34.8 bits (79), Expect = 0.091
Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 67/232 (28%)
Query: 318 PDETTPTHLL--TLL--NENALQ----TTGSDNCTF-------NKNQKELGKDSFTHIPN 362
D + T L TLL E +Q N F + Q + + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 363 GV-NGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVIAEG-------S 414
+ N Q ++ K V + ++ + + L P K V+ +G
Sbjct: 118 RLYNDNQ-----VFAKYNVS---RLQPYLKLRQ----ALLELRPAKNVLIDGVLGSGKTW 165
Query: 415 DADIVVWNYKAKRTISAKTHAHACDYNIFEGLVCHGVPEYVIVGGRVCVDEGNLRVAQGQ 474
A V +YK + + D+ IF ++ + E L + Q
Sbjct: 166 VALDVCLSYKVQCKM---------DFKIF----------WLNLK-NCNSPETVLEMLQK- 204
Query: 475 GNYLPTHTNPPFVYEGQTPEVDIDHKENHEV-IEEIREKLHGLTPNNNHKIS 525
L +P + DH N ++ I I+ +L L + ++
Sbjct: 205 ---LLYQIDPNWTSRS-------DHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Score = 28.3 bits (62), Expect = 9.6
Identities = 15/127 (11%), Positives = 46/127 (36%), Gaps = 30/127 (23%)
Query: 13 HLQSSQNRLLIKNGKVVNADKISDL-DIYIENGVIQQ----LGRNLIVPGGV----RVID 63
HL++ ++ ++++ ++++ ++Q G + + +
Sbjct: 480 HLKNIEH-----------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 64 AAGSYVIPGGIDPHTHFELELMGATSVDDFYHGTKA-AVAGGTTTIIDFALPRKGESLIK 122
Y+ D +E + ++ DF + + T ++ AL + E++
Sbjct: 529 FYKPYIC----DNDPKYERLV---NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF- 580
Query: 123 TYESWRQ 129
E+ +Q
Sbjct: 581 -EEAHKQ 586
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 37.3 bits (87), Expect = 0.014
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 31/129 (24%)
Query: 12 IHLQSSQNRLLIKNGKVV--NADKISDLDIYIENGVIQQLGRNLIVPGGVRVIDAAGSYV 69
+H + ++++ + ++ KI L+ E ++L + + +
Sbjct: 40 VHSTWTCPMEVLRDHLLGVSDSGKIVFLE---EASQQEKLAKEWCFKPCEIRELSHHEFF 96
Query: 70 IPGGIDPHTHF----------ELELM-----------GATSVDDF-YHGTKAAVA----G 103
+PG +D H H +L L+ DF V
Sbjct: 97 MPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKN 156
Query: 104 GTTTIIDFA 112
GTTT FA
Sbjct: 157 GTTTACYFA 165
Score = 34.6 bits (80), Expect = 0.095
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 396 NAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACD---YNIFEGLVCHGVP 452
++ L + G G + D ++ N KA + + + + + G
Sbjct: 397 GGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDD 456
Query: 453 ---EYVIVGGRVCVDEG 466
E V VGG+ V
Sbjct: 457 RNIEEVYVGGKQVVPFS 473
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD;
1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A*
1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A*
3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Length = 347
Score = 33.5 bits (76), Expect = 0.17
Identities = 37/242 (15%), Positives = 66/242 (27%), Gaps = 29/242 (11%)
Query: 180 LSDGELYDAFSAIKNLGAIAMVHAENG-----------EIIDKNTQKLLAAGIKGPEGHQ 228
L G F+A K A A ++ +G E ++K LL G +
Sbjct: 89 LERGFNEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHG-EVTHADI 147
Query: 229 LSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGET 288
E + HI +K A D + + + L
Sbjct: 148 DIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYV---------RDGNERLAATI 198
Query: 289 LAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHLLTLLNENALQTTGSDNCTFNKN 348
+ + N + + L P L+ + + + G+D+ ++
Sbjct: 199 TPQHLMFNRNHMLVGGVRPHLYCL-PILKRNIHQQALRELVASGFNRVFLGTDSAPHARH 257
Query: 349 QKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKG 408
+KE + G L L + F A S N + + L
Sbjct: 258 RKE-----SSCGCAGCFNAPTALGSYATVFEEMNAL--QHFEAFCSVNGPQFYGLPVNDT 310
Query: 409 VI 410
I
Sbjct: 311 FI 312
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 30.2 bits (69), Expect = 2.0
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 532 YSSTSSVYGDADYG 545
ST VYG AD
Sbjct: 116 VGSTCEVYGQADTL 129
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 28.3 bits (64), Expect = 2.8
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 150 DQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAI 192
D +++ + + G + K F A GL +S ++ F AI
Sbjct: 10 DDIKKALDA-VKAEGSFNHKKFFALVGLKAMSANDVKKVFKAI 51
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 29.4 bits (67), Expect = 2.9
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 532 YSSTSSVYGDADY 544
++S+S+VYGDAD
Sbjct: 110 FASSSTVYGDADV 122
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 29.4 bits (67), Expect = 3.2
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 532 YSSTSSVYGDADYG 545
Y+ST S Y D
Sbjct: 106 YASTISAYSDETSL 119
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate,
helical B glycoprotein, membrane protein; HET: NAG;
2.55A {Homo sapiens} PDB: 4ad7_A*
Length = 478
Score = 29.3 bits (65), Expect = 3.7
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 454 YVIVGGRVCVDEGNLRVA--------QGQGNYLPTHTNPPFVYEGQTPEVDIDHKENHEV 505
++ + G +C ++ L A +G YLP + PEV++D +
Sbjct: 392 WISLPGTLCSEKMALSTASDDRCWNGMARGRYLPEVMGDGLANQINNPEVEVDITKPDMT 451
Query: 506 IEEIREKLHGLT 517
I + +L +T
Sbjct: 452 IRQQIMQLKIMT 463
>2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase,
isoprenoid biosynthesis, non-mevalonate PATH; 2.50A
{Thermus thermophilus}
Length = 406
Score = 29.2 bits (66), Expect = 3.8
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 120 LIKTYESWRQKADEKVCCDYALHVGIT 146
L+ Y ++ LH+G+T
Sbjct: 211 LVWVYRELARR------TQAPLHLGLT 231
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 29.0 bits (66), Expect = 4.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 532 YSSTSSVYGDADY 544
++STS+VYG+A
Sbjct: 111 FTSTSTVYGEAKV 123
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu
genomics, center for structural genomics of infectious
DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Length = 359
Score = 28.9 bits (64), Expect = 4.6
Identities = 49/351 (13%), Positives = 93/351 (26%), Gaps = 64/351 (18%)
Query: 70 IPGGIDPHTHF-ELELMGATSVDDFYHGTKAAVAGGTTTII--DFALPRKGESLIKTYES 126
+ +D H H + +++ + +I + P +K Y+
Sbjct: 27 LKNPLDMHLHLRDNQMLELI--------APLSARDFCAAVIMPNLIPPLCNLEDLKAYKM 78
Query: 127 WRQKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAY------KGLYML 180
KA + + + E K + K + A G+
Sbjct: 79 RILKACKDENFTP-----LMTLFFKNYDEKFLYSAKDEIFGIKLYPAGITTNSNGGVSSF 133
Query: 181 SDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIKGPEGHQLSRPEEVEAEAV 240
L A+ +L +VH E + E + E++
Sbjct: 134 DIEYLKPTLEAMSDLNIPLLVHGE------------TNDFVMDRESNFAKIYEKL----- 176
Query: 241 TRACTIANQVDCPLYVVHIMSKAAGDAMAYKRKELMKKGKHCTLYGETLAAAVGTHANQI 300
+ + + HI +K + + + LY + + +
Sbjct: 177 -----AKHFPRLKIVMEHITTKTLCELLK----------DYENLYATITLHHLIITLDDV 221
Query: 301 PCTWHDQAAHVLSPPLRPDETTPTHLL-TLLNENALQTTGSDNCTFNKNQKELGKDSFTH 359
+ H+ P+ L + GSD+ K+ KE
Sbjct: 222 IGGKMN--PHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKE-----CCG 274
Query: 360 IPNGVNGVQDRLSVIWEKGVVPGILSPEKFVAVTSTNAAKIFNLYPKKGVI 410
GV L V+ E E S N KI++L K+ I
Sbjct: 275 CAAGVFSAPVILPVLAELFKQNSSE--ENLQKFLSDNTCKIYDLKFKEDKI 323
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
{Escherichia coli} SCOP: c.1.9.3
Length = 291
Score = 28.8 bits (64), Expect = 5.4
Identities = 43/256 (16%), Positives = 79/256 (30%), Gaps = 36/256 (14%)
Query: 154 QEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIA-MVHAENGEIIDKN 212
Q M ++ + G+N +A G Y + A +++ +A + E + ID
Sbjct: 63 QFMLDVMRETGIN----VVACTGYYQ---DAFFPEHVATRSVQELAQEMVDEIEQGIDGT 115
Query: 213 TQKLLAAGIKGPEGHQLSRPEEVEAEAVTRACTIANQVDCPLYVVHIMSKAAGDAMAYKR 272
K AGI G + +E + A NQ P+ S + +A +
Sbjct: 116 ELK---AGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQ 172
Query: 273 KELMKKGK----HC--TLYGETLAAAVGTHANQIPCTWHDQAAHVLSPPLRPDETTPTHL 326
+ + HC + + + A D PDE L
Sbjct: 173 AHGVDLSRVTVGHCDLKDNLDNILKMIDLGAY----VQFDTIGKNSYY---PDEKRIAML 225
Query: 327 LTLLNENAL-QTTGSDNCTFNKNQKELGKDSFTHIPNGVNGVQDRLSVIWEKGVVPGILS 385
L + L + S + T + K G + ++ +L + G S
Sbjct: 226 HALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLL---TTFIPQLR---QSGF-----S 274
Query: 386 PEKFVAVTSTNAAKIF 401
+ N ++ F
Sbjct: 275 QADVDVMLRENPSQFF 290
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 28.7 bits (65), Expect = 5.5
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 162 KH-GVNSFKTFMAYKGLYMLSDGELYDAFSAIKNLGAIAMVHAENGEIIDKNTQKLLAAG 220
+ G ++ K G + EL+ IK L A+ G++ + ++L
Sbjct: 322 RLTGRHAIKARAEELG-LHYGEEELHRVTQHIKAL-------ADRGQLTLEELDRILREW 373
Query: 221 IKGPEGHQ 228
I H
Sbjct: 374 ITAHHHHH 381
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 28.9 bits (64), Expect = 5.7
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 11/117 (9%)
Query: 435 AHACD-YNIFEGLVCHGVPEY--VIVGGRVCVDEGNLRVAQGQGN-YLPTHTNPPFVYEG 490
++ C Y FE C P+ +G D+ ++ + +L T + F
Sbjct: 283 SYPCASYRAFESNKCFPCPDQGCPQMGHYA--DKFAVKTSDETQKYFLNTGDSSNFARWR 340
Query: 491 QTPEVDIDHKENHEVIEEIREKLHGLTPNN-NHKISAPR-SPSYSSTSSVYGDADYG 545
+ + K + + L G N I P + ++ D G
Sbjct: 341 YGVSITLSGK---RATGQAKVALFGSKGNTHQFNIFKGILKPGSTHSNEFDAKLDVG 394
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 27.2 bits (61), Expect = 6.7
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 150 DQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDAFSAI 192
V + CE ++K F A GL S ++ AF I
Sbjct: 10 ADVAAALKA-CEAADSFNYKAFFAKVGLTAKSADDIKKAFFVI 51
>3lmz_A Putative sugar isomerase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides
distasonis}
Length = 257
Score = 28.2 bits (63), Expect = 6.9
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 129 QKADEKVCCDYALHVGITWWSDQVQQEMAELCEKHGVNSFKTFMAYKGLYMLSDGELYDA 188
++ D C H+ + +Q++ + C H V + A +YM S+ E+ A
Sbjct: 40 ERLDIHYLCIKDFHLPLNSTDEQIR-AFHDKCAAHKVTGY----AVGPIYMKSEEEIDRA 94
Query: 189 FSAIKNLGAIAMVHAENGEIIDKNTQKLLAAGIK 222
F K +G +V N E++ +K+
Sbjct: 95 FDYAKRVGVKLIVGVPNYELLPYVDKKVKEYDFH 128
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET:
VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A
3gd1_I 1c9i_A 1c9l_A
Length = 365
Score = 28.0 bits (62), Expect = 9.1
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 383 ILSP-EKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYN 441
I++P K +A+ + +IFN+ K + A D+ W + + T++ T ++
Sbjct: 73 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWS 132
Query: 442 IFEG 445
+
Sbjct: 133 MEGE 136
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 28.3 bits (64), Expect = 9.2
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 148 WSDQVQQEMAELCEKHGV 165
W Q++ ++ K +
Sbjct: 181 WKKDELQKIKDIVLKSDL 198
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller
coated-PITS, membrane PR; 2.60A {Rattus norvegicus}
SCOP: a.118.1.4 b.69.6.1
Length = 494
Score = 28.0 bits (62), Expect = 9.4
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 383 ILSP-EKFVAVTSTNAAKIFNLYPKKGVIAEGSDADIVVWNYKAKRTISAKTHAHACDYN 441
I++P K +A+ + +IFN+ K + A D+ W + + T++ T ++
Sbjct: 72 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWS 131
Query: 442 IF 443
+
Sbjct: 132 ME 133
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 27.9 bits (63), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 148 WSDQVQQEMAELCEKHGV 165
W+ + MA+LCE+HGV
Sbjct: 179 WTCDELEIMADLCERHGV 196
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 27.8 bits (63), Expect = 9.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 148 WSDQVQQEMAELCEKHGV 165
W + ++ LC K+ V
Sbjct: 173 WKKEELTKLGSLCTKYNV 190
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 27.9 bits (63), Expect = 9.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 148 WSDQVQQEMAELCEKHGV 165
W +V +++ LC+KH V
Sbjct: 181 WEREVLEQIGHLCQKHHV 198
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 27.9 bits (63), Expect = 9.6
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 148 WSDQVQQEMAELCEKHGV 165
W+ +++ ++C KH V
Sbjct: 181 WTKDELKKLGDICLKHNV 198
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 27.9 bits (63), Expect = 9.7
Identities = 2/18 (11%), Positives = 9/18 (50%)
Query: 148 WSDQVQQEMAELCEKHGV 165
++ + E+ +L ++
Sbjct: 167 FAPEWLNELCDLAHRYDA 184
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 27.8 bits (63), Expect = 9.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 148 WSDQVQQEMAELCEKHGV 165
WS++ + +AELC KH V
Sbjct: 177 WSEEEVKRIAELCAKHQV 194
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 27.9 bits (63), Expect = 9.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 148 WSDQVQQEMAELCEKHGV 165
W + ++AELC+KHGV
Sbjct: 211 WDNDDLIKIAELCKKHGV 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.399
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,463,825
Number of extensions: 601946
Number of successful extensions: 1973
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1814
Number of HSP's successfully gapped: 151
Length of query: 596
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 497
Effective length of database: 3,937,614
Effective search space: 1956994158
Effective search space used: 1956994158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.3 bits)