BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10114
(819 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 331 bits (849), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/330 (49%), Positives = 217/330 (65%), Gaps = 8/330 (2%)
Query: 489 SPRKATRKISRIPFKVLDAPELQDDFYLNLVDWSSQNVLSVGLGSCVYLWSACTSQVTRL 548
S RK R I +P ++LDAPE+++D+YLNLVDWSS NVL+V L + VYLWSA + + +L
Sbjct: 81 SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQL 140
Query: 549 CDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD 608
+ G ++SVAW + GN +AVGT VQ+WDV K++ + H+ARVG+L+WN
Sbjct: 141 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY 200
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVW-- 666
+LSSGSR I DVR L GH QEVCGL+W+PD ++LASGGNDN + VW
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Query: 667 --NLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDT 724
PLQT+T+H AVKA+AW P +LA+GGGT+DR IR WN +G + VD
Sbjct: 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319
Query: 725 GSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAI 784
SQVC++ WS H EL+S HG++QNQ+++WKYPT+ +VA+L GH+ RVL L MSPDG +
Sbjct: 320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 379
Query: 785 VTGAGDETLRFWNVFS---KVRSQRESKSV 811
+ A DETLR W F R +RE S
Sbjct: 380 ASAAADETLRLWRCFELDPARRREREKASA 409
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 331 bits (848), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/330 (49%), Positives = 217/330 (65%), Gaps = 8/330 (2%)
Query: 489 SPRKATRKISRIPFKVLDAPELQDDFYLNLVDWSSQNVLSVGLGSCVYLWSACTSQVTRL 548
S RK R I +P ++LDAPE+++D+YLNLVDWSS NVL+V L + VYLWSA + + +L
Sbjct: 92 SSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQL 151
Query: 549 CDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD 608
+ G ++SVAW + GN +AVGT VQ+WDV K++ + H+ARVG+L+WN
Sbjct: 152 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY 211
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVW-- 666
+LSSGSR I DVR L GH QEVCGL+W+PD ++LASGGNDN + VW
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Query: 667 --NLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDT 724
PLQT+T+H AVKA+AW P +LA+GGGT+DR IR WN +G + VD
Sbjct: 271 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 330
Query: 725 GSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAI 784
SQVC++ WS H EL+S HG++QNQ+++WKYPT+ +VA+L GH+ RVL L MSPDG +
Sbjct: 331 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 390
Query: 785 VTGAGDETLRFWNVFS---KVRSQRESKSV 811
+ A DETLR W F R +RE S
Sbjct: 391 ASAAADETLRLWRCFELDPARRREREKASA 420
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 327 bits (838), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/313 (50%), Positives = 211/313 (67%), Gaps = 5/313 (1%)
Query: 491 RKATRKISRIPFKVLDAPELQDDFYLNLVDWSSQNVLSVGLGSCVYLWSACTSQVTRLCD 550
RK R I +P ++LDAPE+++D+YLNLVDWSS NVL+V L + VYLWSA + + +L
Sbjct: 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQ 62
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDML 610
+ G ++SVAW + GN +AVGT VQ+WDV K++ + H+ARVG+L+WN +L
Sbjct: 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYIL 122
Query: 611 SSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVW---- 666
SSGSR I DVR L GH QEVCGL+W+PD ++LASGGNDN + VW
Sbjct: 123 SSGSRSGHIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181
Query: 667 NLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGS 726
PLQT+T+H AVKA+AW P +LA+GGGT+DR IR WN +G + VD S
Sbjct: 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVT 786
QVC++ WS H EL+S HG++QNQ+++WKYPT+ +VA+L GH+ RVL L MSPDG + +
Sbjct: 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301
Query: 787 GAGDETLRFWNVF 799
A DETLR W F
Sbjct: 302 AAADETLRLWRCF 314
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 556 NSVTSVAWNE-RGNLVAVG--THHGYVQVWDVSVAKQVHKLVGHTARVGALAWNG--DML 610
+V +VAW + N++A G T ++++W+V + + H+ +V ++ W+ L
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKEL 255
Query: 611 SSG---SRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWN 667
SG +++++++ + P L GH V L SPD +AS D L +W
Sbjct: 256 ISGHGFAQNQLVIWK---YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Query: 668 LHSMSP 673
+ P
Sbjct: 313 CFELDP 318
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 211/361 (58%), Gaps = 12/361 (3%)
Query: 448 FSPDRRNLFQYLPAPESRMNIEATSPYSLSPVGPKSQKLLRSPRKATRKISRIPFKVLDA 507
F + R L L APE A P L + Q+ + +P K R+ + P +VLDA
Sbjct: 36 FDLNTRVLAFKLDAPE------AKKPVDLRTQHNRPQRPVVTPAK--RRFNTTPERVLDA 87
Query: 508 PELQDDFYLNLVDWSSQNVLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERG 567
P + DD+YLNL+DWS+ NV++V L VY+W+A + V+ L + + + V SV W+ G
Sbjct: 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE-TDESTYVASVKWSHDG 146
Query: 568 NLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDMLSSGSRDRMILQRDVRTP 627
+ ++VG +G V ++DV ++ + GH ARVG L+WN +LSSGSR I DVR
Sbjct: 147 SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIA 206
Query: 628 NSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAI 687
N Q L GH EVCGL W D LASGGNDN + +W+ S P T T H AAVKA+
Sbjct: 207 NHQIGT-LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAV 265
Query: 688 AWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYS 747
AW P LLA+GGGT D+ I FWN TG + VD GSQV +L WS HS E++STHG+
Sbjct: 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325
Query: 748 QNQILVWKYPT--LTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQ 805
N + +W Y + LT+ + H RVLY A+SPDG + T A DE L+FW V+ +
Sbjct: 326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385
Query: 806 R 806
R
Sbjct: 386 R 386
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 141/279 (50%), Gaps = 22/279 (7%)
Query: 524 QNVLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWD 583
Q + S V LW+ + L S+ SV VA++ G +A + V++W+
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSS---SVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 584 VSVAKQVHKLVGHTARVGALAW--NGDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQE 641
+ + + L GH++ V +A+ +G ++S S D+ + + N Q + L GH
Sbjct: 373 RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSS 428
Query: 642 VCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGG 701
V G+ +SPD+Q +AS +D + +WN + LQT T H ++V+ +A+SP + ++
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASA-- 485
Query: 702 GTADRCIRFWNTLTGQPMQCVDTG--SQVCNLAWSKHSSELVSTHGYSQNQILVW-KYPT 758
+ D+ ++ WN GQ +Q + TG S V +A+S + S + +W +
Sbjct: 486 -SDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASA--SDDKTVKLWNRNGQ 540
Query: 759 LTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
L Q LTGHS V +A SPDG+ I + + D+T++ WN
Sbjct: 541 LLQT--LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 13/252 (5%)
Query: 548 LCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW-- 605
L L+ +SV VA++ G +A + V++W+ + + + L GH++ V +A+
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP 149
Query: 606 NGDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYV 665
+G ++S S D+ + + N Q + L GH V G+ +SPD Q +AS +D + +
Sbjct: 150 DGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Query: 666 WNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTG 725
WN + LQT T H ++V+ +A+SP + ++ + D+ ++ WN GQ +Q +
Sbjct: 207 WNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWN-RNGQLLQTLTGH 261
Query: 726 SQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIV 785
S N + + +++ + L + L Q LTGHS V +A SPDG+ I
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHSSSVWGVAFSPDGQTIA 319
Query: 786 TGAGDETLRFWN 797
+ + D+T++ WN
Sbjct: 320 SASDDKTVKLWN 331
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 131/252 (51%), Gaps = 19/252 (7%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW--NGD 608
L A +SV VA++ G +A + V++W+ + + + L GH++ V +A+ +G
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
++S S D+ + + N Q + L GH V G+ +SPD Q +AS +D + +WN
Sbjct: 71 TIASASDDKTV---KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTG--S 726
+ LQT T H ++V +A+SP + ++ + D+ ++ WN GQ +Q + TG S
Sbjct: 128 NGQ-LLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN-RNGQLLQTL-TGHSS 181
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVW-KYPTLTQVAKLTGHSYRVLYLAMSPDGEAIV 785
V +A+S + S + +W + L Q LTGHS V +A SPDG+ I
Sbjct: 182 SVWGVAFSPDGQTIASA--SDDKTVKLWNRNGQLLQT--LTGHSSSVRGVAFSPDGQTIA 237
Query: 786 TGAGDETLRFWN 797
+ + D+T++ WN
Sbjct: 238 SASDDKTVKLWN 249
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 114/215 (53%), Gaps = 18/215 (8%)
Query: 588 KQVHKLVGHTARVGALAW--NGDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGL 645
K+ ++L H++ V +A+ +G ++S S D+ + + N Q + L GH V G+
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVWGV 63
Query: 646 KWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTAD 705
+SPD Q +AS +D + +WN + LQT T H ++V+ +A+SP + ++ + D
Sbjct: 64 AFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASA---SDD 119
Query: 706 RCIRFWNTLTGQPMQCVDTG--SQVCNLAWSKHSSELVSTHGYSQNQILVW-KYPTLTQV 762
+ ++ WN GQ +Q + TG S V +A+S + S + +W + L Q
Sbjct: 120 KTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQTIASA--SDDKTVKLWNRNGQLLQT 175
Query: 763 AKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
LTGHS V +A SPDG+ I + + D+T++ WN
Sbjct: 176 --LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 140/299 (46%), Gaps = 26/299 (8%)
Query: 519 VDWSSQNVLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGY 578
+ + Q ++S + + +W T + R+ L+ SV + ++ER ++ G+
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQYDER--VIITGSSDST 194
Query: 579 VQVWDVSVAKQVHKLVGHTARVGALAWNGDMLSSGSRDRMILQRDVRTPNSQSERR-LVG 637
V+VWDV+ + ++ L+ H V L +N M+ + S+DR I D+ +P + RR LVG
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254
Query: 638 HRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLL 697
HR V + + D++Y+ S D + VWN + ++T H + IA + L+
Sbjct: 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH---KRGIACLQYRDRLV 309
Query: 698 ASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVW--- 754
S G++D IR W+ G ++ ++ ++ + ++ + + Y +I VW
Sbjct: 310 VS--GSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAY-DGKIKVWDLV 364
Query: 755 -----KYPTLTQVAK-LTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQRE 807
+ P T + L HS RV L D IV+ + D+T+ W+ + +Q E
Sbjct: 365 AALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE 421
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 22/179 (12%)
Query: 516 LNLVDWSSQNVLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTH 575
+N+VD+ + ++S + +W+ T + R + +G+ R LV G+
Sbjct: 259 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR----TLNGHKRGIACLQYRDRLVVSGSS 314
Query: 576 HGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDMLSSGSRD------RMILQRDVRTP-N 628
+++WD+ + L GH V + ++ + SG+ D ++ D R P
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 374
Query: 629 SQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHS---------MSPLQTYT 678
+ R LV H V L++ D + S +D+ + +W+ + SP +TYT
Sbjct: 375 TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYT 431
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 32/295 (10%)
Query: 526 VLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVS 585
++S + + +W T R L +SV ++++ G L+A + +++WD
Sbjct: 123 MVSASEDATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 586 VAKQVHKLVGHTARVGALAW--NGDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVC 643
+ + + GH V +++ NGD + S SRD+ I +V+T + GHR+ V
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVR 238
Query: 644 GLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPH--HHGLLASGG 701
++ + D +AS ND + VW + + EH V+ I+W+P + + + G
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 298
Query: 702 ---------------GTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSK----HSSELVS 742
G+ D+ I+ W+ TG + + V + W + HS
Sbjct: 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-----VGHDNWVRGVLFHSGGKFI 353
Query: 743 THGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
+ VW Y + L H + V L +VTG+ D+T++ W
Sbjct: 354 LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 12/179 (6%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
P + L GHR V + + P + S D + VW+ + +T H +V+
Sbjct: 96 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 155
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDT----GSQVCNLAWSKHSSELVS 742
I++ H LLAS +AD I+ W+ Q +C+ T V +++ + +VS
Sbjct: 156 ISFD-HSGKLLASC--SADMTIKLWDF---QGFECIRTMHGHDHNVSSVSIMPNGDHIVS 209
Query: 743 THGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
I +W+ T V TGH V + + DG I + + D+T+R W V +K
Sbjct: 210 --ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 140/330 (42%), Gaps = 42/330 (12%)
Query: 491 RKATRKISRIPFKVLDAPELQDDFYLNLVDWSSQNVLSVGLGSCVYLWSACTSQVTRLCD 550
+K + +SR+ + P D Y Q + S G + ++ A T + +L D
Sbjct: 600 KKTIKNLSRLVVR----PH-TDAVYHACFSQDGQRIASCGADKTLQVFKAETGE--KLLD 652
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW----N 606
+ A + V A++ + +A + V++WD + K VH H+ +V + N
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 607 GDMLSSGSRDRMILQRDVRTPNSQSERR--LVGHRQEVCGLKWSPDNQYLASGGNDNRLY 664
+L++GS D + D+ +Q E R + GH V ++SPD++ LAS D L
Sbjct: 713 HLLLATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 665 VWNLHSMSPLQTYT-------------EHLAAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+W++ S + ++ + VK +WS ++ + A + +
Sbjct: 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA----AKNKVLLF 824
Query: 712 NTLTGQPMQCVDTGS----QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTG 767
+ T + + TG Q C+ + H ++ SQ + +W + +VA G
Sbjct: 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDH----LAVIALSQYCVELWNIDSRLKVADCRG 880
Query: 768 HSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
H V + SPDG + +T + D+T+R W
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 647 WSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADR 706
+S D Q +AS G D L V+ + L H V A+S + +AD+
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATC---SADK 679
Query: 707 CIRFWNTLTGQPMQCVDTGSQVCNLA-WSKHSSELVSTHGYSQNQILVWKYPTLTQVAKL 765
++ W++ TG+ + D S+ N ++ S+ L+ G + + +W +
Sbjct: 680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 739
Query: 766 TGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQRESKSV 811
GH+ V + SPD E + + + D TLR W+ VRS E KS+
Sbjct: 740 FGHTNSVNHCRFSPDDELLASCSADGTLRLWD----VRSANERKSI 781
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 14/189 (7%)
Query: 613 GSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS 672
G D I + + PN++ VGH++ V ++++ D + L S D+ + VWN +
Sbjct: 979 GDEDGAI--KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036
Query: 673 PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQ---PMQCVDTGSQVC 729
+ H VK L S GT ++ WN +TG+ C V
Sbjct: 1037 YV-FLQAHQETVKDFRLLQDSRLLSWSFDGT----VKVWNVITGRIERDFTC--HQGTVL 1089
Query: 730 NLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAG 789
+ A S +++ ST +I W + L+ + +L GH+ V A S DG + TG
Sbjct: 1090 SCAISSDATKFSSTSADKTAKI--WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1147
Query: 790 DETLRFWNV 798
+ +R WNV
Sbjct: 1148 NGEIRIWNV 1156
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 15/176 (8%)
Query: 526 VLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVS 585
+LS V +W+ T ++ R D + +V S A + + + ++W
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIER--DFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
Query: 586 VAKQVHKLVGHTA--RVGALAWNGDMLSSGSRDRMILQRDVR--------TPNSQSERRL 635
+ +H+L GH R A + +G +L++G + I +V P S E
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS-VEEGT 1174
Query: 636 VGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSP 691
H V + +SPD++ L S G L WN+ + QT+ + +K I SP
Sbjct: 1175 ATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1228
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 140/330 (42%), Gaps = 42/330 (12%)
Query: 491 RKATRKISRIPFKVLDAPELQDDFYLNLVDWSSQNVLSVGLGSCVYLWSACTSQVTRLCD 550
+K + +SR+ + P D Y Q + S G + ++ A T + +L D
Sbjct: 607 KKTIKNLSRLVVR----PH-TDAVYHACFSQDGQRIASCGADKTLQVFKAETGE--KLLD 659
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW----N 606
+ A + V A++ + +A + V++WD + K VH H+ +V + N
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 607 GDMLSSGSRDRMILQRDVRTPNSQSERR--LVGHRQEVCGLKWSPDNQYLASGGNDNRLY 664
+L++GS D + D+ +Q E R + GH V ++SPD++ LAS D L
Sbjct: 720 HLLLATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 775
Query: 665 VWNLHSMSPLQTYT-------------EHLAAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+W++ S + ++ + VK +WS ++ + A + +
Sbjct: 776 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA----AKNKVLLF 831
Query: 712 NTLTGQPMQCVDTGS----QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTG 767
+ T + + TG Q C+ + H ++ SQ + +W + +VA G
Sbjct: 832 DIHTSGLLAEIHTGHHSTIQYCDFSPYDH----LAVIALSQYCVELWNIDSRLKVADCRG 887
Query: 768 HSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
H V + SPDG + +T + D+T+R W
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 647 WSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADR 706
+S D Q +AS G D L V+ + L H V A+S + +AD+
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATC---SADK 686
Query: 707 CIRFWNTLTGQPMQCVDTGSQVCNLA-WSKHSSELVSTHGYSQNQILVWKYPTLTQVAKL 765
++ W++ TG+ + D S+ N ++ S+ L+ G + + +W +
Sbjct: 687 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 746
Query: 766 TGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQRESKSV 811
GH+ V + SPD E + + + D TLR W+ VRS E KS+
Sbjct: 747 FGHTNSVNHCRFSPDDELLASCSADGTLRLWD----VRSANERKSI 788
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 14/189 (7%)
Query: 613 GSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS 672
G D I + + PN++ VGH++ V ++++ D + L S D+ + VWN +
Sbjct: 986 GDEDGAI--KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1043
Query: 673 PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQ---PMQCVDTGSQVC 729
+ H VK L S GT ++ WN +TG+ C V
Sbjct: 1044 YV-FLQAHQETVKDFRLLQDSRLLSWSFDGT----VKVWNVITGRIERDFTC--HQGTVL 1096
Query: 730 NLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAG 789
+ A S +++ ST +I W + L+ + +L GH+ V A S DG + TG
Sbjct: 1097 SCAISSDATKFSSTSADKTAKI--WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1154
Query: 790 DETLRFWNV 798
+ +R WNV
Sbjct: 1155 NGEIRIWNV 1163
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 15/176 (8%)
Query: 526 VLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVS 585
+LS V +W+ T ++ R D + +V S A + + + ++W
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIER--DFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
Query: 586 VAKQVHKLVGHTA--RVGALAWNGDMLSSGSRDRMILQRDVR--------TPNSQSERRL 635
+ +H+L GH R A + +G +L++G + I +V P S E
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS-VEEGT 1181
Query: 636 VGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSP 691
H V + +SPD++ L S G L WN+ + QT+ + +K I SP
Sbjct: 1182 ATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1235
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 43 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 100
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 101 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 158
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 215
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 267
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 268 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 75 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 190 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 247
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQK 270
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 67 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 120
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 121 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 53 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 225
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 277
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 85 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 200 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQK 280
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 77 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 130
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 131 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 69 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 126
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 184
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 241
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 293
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 294 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 101 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 216 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 273
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQK 296
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 92
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 93 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 146
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 147 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 50 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + L H V + ++ D
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 222
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNMVYIWNLQTKEI 274
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 82 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 197 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQK 277
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 74 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 127
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 128 -GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 64 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 121
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 122 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 179
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 180 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 236
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 288
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 289 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 96 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 211 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 268
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQK 291
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 88 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 141
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 142 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 47 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 219
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 271
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 272 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 79 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 194 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQK 274
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 71 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 124
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 125 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 47 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 219
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 271
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 272 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 79 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 194 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQK 274
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 71 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 124
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 125 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 71 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 128
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 129 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 186
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 243
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 295
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 296 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 103 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 218 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 275
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQK 298
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 95 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 148
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 149 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 48 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 105
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 106 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 163
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 220
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 272
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 273 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 80 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 195 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 252
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQK 275
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 71
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 72 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 125
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 126 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 53 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 225
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 277
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 85 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 200 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQK 280
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 77 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 130
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 131 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 46 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 103
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 104 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 161
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 218
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 270
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 271 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 78 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 193 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 250
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQK 273
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 70 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 123
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 124 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 52 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 109
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 110 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 167
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 224
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 276
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 277 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 84 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 199 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 256
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQK 279
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 75
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 76 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 129
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 130 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 53 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 225
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 277
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 85 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 200 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQK 280
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 77 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 130
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 131 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 50 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + L H V + ++ D
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNDLKLW 222
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNMVYIWNLQTKEI 274
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 82 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 197 PVSFVKFSPNGKYILA--ATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQK 277
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 74 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 127
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 128 -GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 50 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 222
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 274
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ W
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 82 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 197 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQK 277
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LA+ D + +W + +T + H +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 74 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 127
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 128 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 17/215 (7%)
Query: 596 HTARVGALAW---NGDMLSSGSRDRMI----LQRDVRTPNSQSERRLVGHRQEVCGLKWS 648
HT V A+A N D++ S SRD+ I L +D + ++RRL GH V + S
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA-YGVAQRRLTGHSHFVEDVVLS 439
Query: 649 PDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCI 708
D Q+ SG D L +W+L + + + H V ++A+S + ++++ + DR I
Sbjct: 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTI 496
Query: 709 RFWNTLTGQPMQCVDTGSQ-----VCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVA 763
+ WNTL G+ + G + V + +S ++ + + VW +
Sbjct: 497 KLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS 555
Query: 764 KLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
L GH+ V +A+SPDG +G D + W++
Sbjct: 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 112/270 (41%), Gaps = 40/270 (14%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD--MLSSGSR 615
V V + G G+ G +++WD++ + VGHT V ++A++ D + S SR
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 616 DRMILQRDVRTPNSQSERRLV------GHRQEVCGLKWSPD--NQYLASGGNDNRLYVWN 667
DR I + N+ E + GHR V +++SP+ + S D + VWN
Sbjct: 493 DRTI-----KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 668 LHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ 727
L + T H V +A SP L ASGG D + W+ G+ + ++ S
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGG--KDGVVLLWDLAEGKKLYSLEANSV 604
Query: 728 VCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKL----------------TGHSYR 771
+ L +S + L + +++ I +W + + V L +
Sbjct: 605 IHALCFSPNRYWLCAA---TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661
Query: 772 VLY---LAMSPDGEAIVTGAGDETLRFWNV 798
V+Y L S DG + +G D +R W +
Sbjct: 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 764 KLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQR---ESKSVLNLFSSI 818
+LTGHS+ V + +S DG+ ++G+ D LR W++ + V ++R +K VL++ S+
Sbjct: 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 748 QNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVR 803
++ +W + GH+ VL +A S D IV+ + D T++ WN + +
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 117/274 (42%), Gaps = 37/274 (13%)
Query: 543 SQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGA 602
S + + C L+ADG S +W++ +++WDV+ + + VGH + V +
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKT------------LRLWDVATGETYQRFVGHKSDVMS 112
Query: 603 LAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSP------DNQYL 654
+ + M+ SGSRD+ I V T Q L+GH V ++ P D+ +
Sbjct: 113 VDIDKKASMIISGSRDKTI---KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 655 ASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTL 714
S GND + WNL+ + H + + + SP L+AS G D I WN
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLA 226
Query: 715 TGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVW----KYPTLTQVAKLTGHSY 770
+ M + +V +LA+S + L + + I V+ +Y + G+S
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 771 ----RVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
+ LA S DG+ + G D +R W V +
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 15/220 (6%)
Query: 593 LVGHTARVGALAWNG---DMLSSGSRDRMILQRDVRTPNSQSE---RRLVGHRQEVCGLK 646
L GH V +LA + ++L S SRD+ ++ + + + R GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 647 WSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADR 706
+ D Y S D L +W++ + Q + H + V ++ +++ G+ D+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDK 129
Query: 707 CIRFWNTLTGQPMQCV----DTGSQVCNLAWSKHSSELVSTHGYSQNQIL-VWKYPTLTQ 761
I+ W T+ GQ + + D SQV + K + V+ ++++ W
Sbjct: 130 TIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
A GH+ + L SPDG I + D + WN+ +K
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQR 806
V GHS+ V ++ DG ++ + D+TLR W+V + QR
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR 102
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 117/274 (42%), Gaps = 37/274 (13%)
Query: 543 SQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGA 602
S + + C L+ADG S +W++ +++WDV+ + + VGH + V +
Sbjct: 59 SHIVQDCTLTADGAYALSASWDKT------------LRLWDVATGETYQRFVGHKSDVMS 106
Query: 603 LAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSP------DNQYL 654
+ + M+ SGSRD+ I V T Q L+GH V ++ P D+ +
Sbjct: 107 VDIDKKASMIISGSRDKTI---KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 655 ASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTL 714
S GND + WNL+ + H + + + SP L+AS G D I WN
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLA 220
Query: 715 TGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVW----KYPTLTQVAKLTGHSY 770
+ M + +V +LA+S + L + + I V+ +Y + G+S
Sbjct: 221 AKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSK 277
Query: 771 ----RVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
+ LA S DG+ + G D +R W V +
Sbjct: 278 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 311
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 15/220 (6%)
Query: 593 LVGHTARVGALAWNG---DMLSSGSRDRMILQRDVRTPNSQ---SERRLVGHRQEVCGLK 646
L GH V +LA + ++L S SRD+ ++ + + + R GH V
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 647 WSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADR 706
+ D Y S D L +W++ + Q + H + V ++ +++ G+ D+
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDK 123
Query: 707 CIRFWNTLTGQPMQCV----DTGSQVCNLAWSKHSSELVSTHGYSQNQIL-VWKYPTLTQ 761
I+ W T+ GQ + + D SQV + K + V+ ++++ W
Sbjct: 124 TIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
A GH+ + L SPDG I + D + WN+ +K
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQR 806
V GHS+ V ++ DG ++ + D+TLR W+V + QR
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR 96
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 117/274 (42%), Gaps = 37/274 (13%)
Query: 543 SQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGA 602
S + + C L+ADG S +W++ +++WDV+ + + VGH + V +
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKT------------LRLWDVATGETYQRFVGHKSDVMS 112
Query: 603 LAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSP------DNQYL 654
+ + M+ SGSRD+ I V T Q L+GH V ++ P D+ +
Sbjct: 113 VDIDKKASMIISGSRDKTI---KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 655 ASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTL 714
S GND + WNL+ + H + + + SP L+AS G D I WN
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLA 226
Query: 715 TGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVW----KYPTLTQVAKLTGHSY 770
+ M + +V +LA+S + L + + I V+ +Y + G+S
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 771 ----RVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
+ LA S DG+ + G D +R W V +
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 15/220 (6%)
Query: 593 LVGHTARVGALAWNG---DMLSSGSRDRMILQRDVRTPNSQSE---RRLVGHRQEVCGLK 646
L GH V +LA + ++L S SRD+ ++ + + + R GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 647 WSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADR 706
+ D Y S D L +W++ + Q + H + V ++ +++ G+ D+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDK 129
Query: 707 CIRFWNTLTGQPMQCV----DTGSQVCNLAWSKHSSELVSTHGYSQNQIL-VWKYPTLTQ 761
I+ W T+ GQ + + D SQV + K + V+ ++++ W
Sbjct: 130 TIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
A GH+ + L SPDG I + D + WN+ +K
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQR 806
V GHS+ V ++ DG ++ + D+TLR W+V + QR
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR 102
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 117/274 (42%), Gaps = 37/274 (13%)
Query: 543 SQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGA 602
S + + C L+ADG S +W++ +++WDV+ + + VGH + V +
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKT------------LRLWDVATGETYQRFVGHKSDVMS 112
Query: 603 LAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSP------DNQYL 654
+ + M+ SGSRD+ I V T Q L+GH V ++ P D+ +
Sbjct: 113 VDIDKKASMIISGSRDKTI---KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 655 ASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTL 714
S GND + WNL+ + H + + + SP L+AS G D I WN
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLA 226
Query: 715 TGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVW----KYPTLTQVAKLTGHSY 770
+ M + +V +LA+S + L + + I V+ +Y + G+S
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSA 283
Query: 771 ----RVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
+ LA S DG+ + G D +R W V +
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 15/220 (6%)
Query: 593 LVGHTARVGALAWNG---DMLSSGSRDRMILQRDVRTPNSQSE---RRLVGHRQEVCGLK 646
L GH V +LA + ++L S SRD+ ++ + + + R GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 647 WSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADR 706
+ D Y S D L +W++ + Q + H + V ++ +++ G+ D+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDK 129
Query: 707 CIRFWNTLTGQPMQCV----DTGSQVCNLAWSKHSSELVSTHGYSQNQIL-VWKYPTLTQ 761
I+ W T+ GQ + + D SQV + K + V+ ++++ W
Sbjct: 130 TIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
A GH+ + L SPDG I + D + WN+ +K
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQR 806
V GHS+ V ++ DG ++ + D+TLR W+V + QR
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR 102
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 33/266 (12%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW--NGDMLSSGSR 615
+ SV ++ G +A G +++WD+ K V L GH + +L + +GD L SGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 616 DRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSP-DNQYLASGGNDNRLYVWNLHSM--- 671
DR + D+RT + V + SP D +Y+A+G D + VW+ +
Sbjct: 186 DRTVRIWDLRTGQCSLTLSI---EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 672 ----SPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDT-GS 726
S ++ T H +V ++ ++ +++ G+ DR ++ WN T S
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVS---GSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 727 QVCNLAWSKHSSELVST----------HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLA 776
C + + H ++S G +L W + + L GH V+ +A
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Query: 777 ------MSPDGEAIVTGAGDETLRFW 796
+ P+ TG+GD R W
Sbjct: 360 VANGSSLGPEYNVFATGSGDCKARIW 385
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 34/237 (14%)
Query: 589 QVHKLVGHTARVGALAW--NGDMLSSGSR------------------DRMILQRDVRTPN 628
++HK + HT+ V + + +G+ L++G D +D N
Sbjct: 56 ELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 115
Query: 629 SQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIA 688
+ S + + VC +SPD ++LA+G D + +W++ + + H + ++
Sbjct: 116 TSSSPSSDLYIRSVC---FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 172
Query: 689 WSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQ 748
+ P L++ G+ DR +R W+ TGQ + V +A S + ++ G
Sbjct: 173 YFPSGDKLVS---GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA-GSLD 228
Query: 749 NQILVWKYPTLTQVAKL-------TGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
+ VW T V +L TGH V + + DG+++V+G+ D +++ WN+
Sbjct: 229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 27/212 (12%)
Query: 606 NGDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYV 665
+G L++G+ DR+I D+ N + L GH Q++ L + P L SG D + +
Sbjct: 134 DGKFLATGAEDRLIRIWDIE--NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 666 WNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTG 725
W+L + T + V +A SP +A+ G+ DR +R W++ TG ++ +D+
Sbjct: 192 WDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAA--GSLDRAVRVWDSETGFLVERLDSE 248
Query: 726 SQ--------VCNLAWSKHSSELVSTHGYSQNQILVW-----------KYP-TLTQVAKL 765
++ V ++ +++ +VS G + +W K P + T
Sbjct: 249 NESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306
Query: 766 TGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
GH VL +A + + E I++G+ D + FW+
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 28/201 (13%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKL- 593
V +W T Q + + DG + +V+ + G +A G+ V+VWD V +L
Sbjct: 189 VRIWDLRTGQCSLTLSIE-DGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 594 ------VGHTARVGALAW--NGDMLSSGSRDRMI----LQR-----DVRTPNSQS-ERRL 635
GH V ++ + +G + SGS DR + LQ D +TPNS + E
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306
Query: 636 VGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPH--- 692
+GH+ V + + +++Y+ SG D + W+ S +PL H +V ++A +
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Query: 693 --HHGLLASGGGTADRCIRFW 711
+ + A+G G D R W
Sbjct: 367 GPEYNVFATGSG--DCKARIW 385
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 27/168 (16%)
Query: 531 LGSCVYLWSACTS-QVTRLCDLSADG----NSVTSVAWNERGNLVAVGTHHGYVQVWDVS 585
L V +W + T V RL + G +SV SV + G V G+ V++W++
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
Query: 586 VAKQVHK------------LVGHTARVGALA--WNGDMLSSGSRDRMILQRDVRTPNSQS 631
A +GH V ++A N + + SGS+DR +L D ++ N
Sbjct: 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL- 345
Query: 632 ERRLVGHRQEVC------GLKWSPDNQYLASGGNDNRLYVWNLHSMSP 673
L GHR V G P+ A+G D + +W ++P
Sbjct: 346 -LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAP 392
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 50 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 222
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 274
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ +
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 82 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 197 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQK 277
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 74 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 127
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 128 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 9/207 (4%)
Query: 519 VDWSSQN--VLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHH 576
V WSS + ++S + +W + + + L N V +N + NL+ G+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 577 GYVQVWDVSVAKQVHKLVGHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERR 634
V++WDV K + L H+ V A+ +N G ++ S S D + D T + Q +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD--TASGQCLKT 189
Query: 635 LVGHRQ-EVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHH 693
L+ V +K+SP+ +Y+ + DN L +W+ L+TYT H I +
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Query: 694 HGLLASGGGTADRCIRFWNTLTGQPMQ 720
G G+ D + WN T + +Q
Sbjct: 250 TGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 535 VYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLV 594
+ +W A + + +S ++ VAW+ NL+ + +++WDVS K + L
Sbjct: 50 IKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 595 GHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQ 652
GH+ V +N +++ SGS D + DV+T + + L H V + ++ D
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 653 YLASGGNDNRLYVWNLHSMSPLQTYTEHL-AAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
+ S D +W+ S L+T + V + +SP+ +LA+ T D ++ W
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLW 222
Query: 712 NTLTGQPMQ----------CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQ 761
+ G+ ++ C+ V W +VS G N + +W T
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVS--GSEDNLVYIWNLQTKEI 274
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGA--GDETLRFW 796
V KL GH+ V+ A P I + A D+T++ +
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 14/263 (5%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L+ +V+SV ++ G +A + +++W K + GH + +AW+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L S S D+ + DV + + + L GH V ++P + + SG D + +W++
Sbjct: 82 LLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCV--DTGS 726
+ L+T H V A+ ++ +++S + D R W+T +GQ ++ + D
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 727 QVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGH---SYRVLYLAMSPDGEA 783
V + +S + +++ N + +W Y + TGH Y + G+
Sbjct: 197 PVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 784 IVTGAGDETLRFWNVFSKVRSQR 806
IV+G+ D + WN+ +K Q+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQK 277
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
PN + L GH + V +K+SP+ ++LAS D + +W + +T + H +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 687 IAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ---VCNLAWSKHSSELVST 743
+AWS + L+++ + D+ ++ W+ +G+ ++ + S CN + S+ +VS
Sbjct: 74 VAWSSDSNLLVSA---SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVS- 127
Query: 744 HGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS 800
G + +W T + L HS V + + DG IV+ + D R W+ S
Sbjct: 128 -GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 9/207 (4%)
Query: 519 VDWSSQN--VLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHH 576
V WSS + ++S + +W + + + L N V +N + NL+ G+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 577 GYVQVWDVSVAKQVHKLVGHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERR 634
V++WDV K + L H+ V A+ +N G ++ S S D + D T + Q +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD--TASGQCLKT 189
Query: 635 LVGHRQ-EVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHH 693
L+ V +K+SP+ +Y+ + DN L +W+ L+TYT H I +
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Query: 694 HGLLASGGGTADRCIRFWNTLTGQPMQ 720
G G+ D + WN T + +Q
Sbjct: 250 TGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 15/248 (6%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSV----AKQVHKLVGHTARVGALAW-NGDMLSS 612
V + A+ GN VA G ++++ + +L GHT + + + + + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 613 GSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS 672
S D D+ T + H +V L +PD + SG D +W++
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTG--HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 673 PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNL- 731
QT+T H + + AI + P+ + A G+ D R ++ Q + + +C +
Sbjct: 218 CRQTFTGHESDINAICFFPNGN---AFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 732 --AWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAG 789
++SK L++ GY VW + L GH RV L ++ DG A+ TG+
Sbjct: 275 SVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 790 DETLRFWN 797
D L+ WN
Sbjct: 333 DSFLKIWN 340
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 19/178 (10%)
Query: 630 QSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAW 689
++ R L GH ++ + W D++ L S D +L +W+ ++ + + + V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 690 SPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQN 749
+P + +A GG D +N T + G+ + + H+ L N
Sbjct: 106 APSGN-YVACGG--LDNICSIYNLKTRE-------GNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 750 QIL---------VWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
QI+ +W T Q TGH+ V+ L+++PD V+GA D + + W+V
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 89/245 (36%), Gaps = 51/245 (20%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW--NGDMLSSGSR 615
+ ++ W L+ + G + +WD +VH + ++ V A+ +G+ ++ G
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 616 DRM--ILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSP 673
D + I R N + R L GH + ++ DNQ + S G D +W++ +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQ 176
Query: 674 LQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAW 733
T+T H V +++ +P ++ G D + W+ G Q
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVS---GACDASAKLWDVREGMCRQ------------- 220
Query: 734 SKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETL 793
TGH + + P+G A TG+ D T
Sbjct: 221 ------------------------------TFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 794 RFWNV 798
R +++
Sbjct: 251 RLFDL 255
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 37/270 (13%)
Query: 543 SQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGA 602
S + + C L+ADG S +W++ +++WDV+ + + VGH + V +
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKT------------LRLWDVATGETYQRFVGHKSDVMS 112
Query: 603 LAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSP------DNQYL 654
+ + M+ SGSRD+ I V T Q L+GH V ++ P D+ +
Sbjct: 113 VDIDKKASMIISGSRDKTI---KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 655 ASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTL 714
S GND + WNL+ + H + + + SP L+AS G D I WN
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLA 226
Query: 715 TGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVW----KYPTLTQVAKLTGHSY 770
+ M + +V +LA+S + L + + I V+ +Y + G+S
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 771 ----RVLYLAMSPDGEAIVTGAGDETLRFW 796
+ LA S DG+ + G D +R W
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 15/220 (6%)
Query: 593 LVGHTARVGALAWNG---DMLSSGSRDRMILQRDVRTPNSQ---SERRLVGHRQEVCGLK 646
L GH V +LA + ++L S SRD+ ++ + + + R GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 647 WSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADR 706
+ D Y S D L +W++ + Q + H + V ++ +++ G+ D+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDK 129
Query: 707 CIRFWNTLTGQPMQCV----DTGSQVCNLAWSKHSSELVSTHGYSQNQIL-VWKYPTLTQ 761
I+ W T+ GQ + + D SQV + K + V+ ++++ W
Sbjct: 130 TIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
A GH+ + L SPDG I + D + WN+ +K
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQR 806
V GHS+ V ++ DG ++ + D+TLR W+V + QR
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR 102
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 15/248 (6%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSV----AKQVHKLVGHTARVGALAW-NGDMLSS 612
V + A+ GN VA G ++++ + +L GHT + + + + + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 613 GSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS 672
S D D+ T + H +V L +PD + SG D +W++
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTG--HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 673 PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNL- 731
QT+T H + + AI + P+ + A G+ D R ++ Q + + +C +
Sbjct: 218 CRQTFTGHESDINAICFFPNGN---AFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 732 --AWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAG 789
++SK L++ GY VW + L GH RV L ++ DG A+ TG+
Sbjct: 275 SVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 790 DETLRFWN 797
D L+ WN
Sbjct: 333 DSFLKIWN 340
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 19/178 (10%)
Query: 630 QSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAW 689
++ R L GH ++ + W D++ L S D +L +W+ ++ + + + V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 690 SPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQN 749
+P + +A GG D +N T + G+ + + H+ L N
Sbjct: 106 APSGN-YVACGG--LDNICSIYNLKTRE-------GNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 750 QIL---------VWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
QI+ +W T Q TGH+ V+ L+++PD V+GA D + + W+V
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 89/245 (36%), Gaps = 51/245 (20%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW--NGDMLSSGSR 615
+ ++ W L+ + G + +WD +VH + ++ V A+ +G+ ++ G
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 616 DRM--ILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSP 673
D + I R N + R L GH + ++ DNQ + S G D +W++ +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQ 176
Query: 674 LQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAW 733
T+T H V +++ +P ++ G D + W+ G Q
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVS---GACDASAKLWDVREGMCRQ------------- 220
Query: 734 SKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETL 793
TGH + + P+G A TG+ D T
Sbjct: 221 ------------------------------TFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 794 RFWNV 798
R +++
Sbjct: 251 RLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 15/248 (6%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSV----AKQVHKLVGHTARVGALAW-NGDMLSS 612
V + A+ GN VA G ++++ + +L GHT + + + + + +
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 170
Query: 613 GSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS 672
S D D+ T + H +V L +PD + SG D +W++
Sbjct: 171 SSGDTTCALWDIETGQQTTTFTG--HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 228
Query: 673 PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNL- 731
QT+T H + + AI + P+ + A G+ D R ++ Q + + +C +
Sbjct: 229 CRQTFTGHESDINAICFFPNGN---AFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 285
Query: 732 --AWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAG 789
++SK L++ GY VW + L GH RV L ++ DG A+ TG+
Sbjct: 286 SVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 343
Query: 790 DETLRFWN 797
D L+ WN
Sbjct: 344 DSFLKIWN 351
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 19/178 (10%)
Query: 630 QSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAW 689
++ R L GH ++ + W D++ L S D +L +W+ ++ + + + V A+
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 690 SPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQN 749
+P + +A GG D +N T + G+ + + H+ L N
Sbjct: 117 APSGN-YVACGG--LDNICSIYNLKTRE-------GNVRVSRELAGHTGYLSCCRFLDDN 166
Query: 750 QIL---------VWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
QI+ +W T Q TGH+ V+ L+++PD V+GA D + + W+V
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 89/245 (36%), Gaps = 51/245 (20%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW--NGDMLSSGSR 615
+ ++ W L+ + G + +WD +VH + ++ V A+ +G+ ++ G
Sbjct: 69 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 128
Query: 616 DRM--ILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSP 673
D + I R N + R L GH + ++ DNQ + S G D +W++ +
Sbjct: 129 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQ 187
Query: 674 LQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAW 733
T+T H V +++ +P ++ G D + W+ G Q
Sbjct: 188 TTTFTGHTGDVMSLSLAPDTRLFVS---GACDASAKLWDVREGMCRQ------------- 231
Query: 734 SKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETL 793
TGH + + P+G A TG+ D T
Sbjct: 232 ------------------------------TFTGHESDINAICFFPNGNAFATGSDDATC 261
Query: 794 RFWNV 798
R +++
Sbjct: 262 RLFDL 266
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 15/248 (6%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSV----AKQVHKLVGHTARVGALAW-NGDMLSS 612
V + A+ GN VA G ++++ + +L GHT + + + + + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 613 GSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS 672
S D D+ T + H +V L +PD + SG D +W++
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTG--HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 673 PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNL- 731
QT+T H + + AI + P+ + A G+ D R ++ Q + + +C +
Sbjct: 218 CRQTFTGHESDINAICFFPNGN---AFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 732 --AWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAG 789
++SK L++ GY VW + L GH RV L ++ DG A+ TG+
Sbjct: 275 SVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 790 DETLRFWN 797
D L+ WN
Sbjct: 333 DSFLKIWN 340
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 19/178 (10%)
Query: 630 QSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAW 689
++ R L GH ++ + W D++ L S D +L +W+ ++ + + + V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 690 SPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQN 749
+P + +A GG D +N T + G+ + + H+ L N
Sbjct: 106 APSGN-YVACGG--LDNICSIYNLKTRE-------GNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 750 QIL---------VWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
QI+ +W T Q TGH+ V+ L+++PD V+GA D + + W+V
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 89/245 (36%), Gaps = 51/245 (20%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW--NGDMLSSGSR 615
+ ++ W L+ + G + +WD +VH + ++ V A+ +G+ ++ G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 616 DRM--ILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSP 673
D + I R N + R L GH + ++ DNQ + S G D +W++ +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQ 176
Query: 674 LQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAW 733
T+T H V +++ +P ++ G D + W+ G Q
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVS---GACDASAKLWDVREGMCRQ------------- 220
Query: 734 SKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETL 793
TGH + + P+G A TG+ D T
Sbjct: 221 ------------------------------TFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 794 RFWNV 798
R +++
Sbjct: 251 RLFDL 255
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 15/248 (6%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSV----AKQVHKLVGHTARVGALAW-NGDMLSS 612
V + A+ GN VA G ++++ + +L GHT + + + + + +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 613 GSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS 672
S D D+ T + H +V L +PD + SG D +W++
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTG--HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 673 PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNL- 731
QT+T H + + AI + P+ + G+ D R ++ Q + + +C +
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFAT---GSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 732 --AWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAG 789
++SK L++ GY VW + L GH RV L ++ DG A+ TG+
Sbjct: 275 SVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 790 DETLRFWN 797
D L+ WN
Sbjct: 333 DSFLKIWN 340
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 19/178 (10%)
Query: 630 QSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAW 689
++ R L GH ++ + W D++ L S D +L +W+ ++ + + + V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 690 SPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQN 749
+P + +A GG D +N T + G+ + + H+ L N
Sbjct: 106 APSGN-YVACGG--LDNICSIYNLKTRE-------GNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 750 QIL---------VWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
QI+ +W T Q TGH+ V+ L+++PD V+GA D + + W+V
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 89/245 (36%), Gaps = 51/245 (20%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW--NGDMLSSGSR 615
+ ++ W L+ + G + +WD +VH + ++ V A+ +G+ ++ G
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 616 DRM--ILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSP 673
D + I R N + R L GH + ++ DNQ + S G D +W++ +
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQ 176
Query: 674 LQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAW 733
T+T H V +++ +P ++ G D + W+ G Q
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVS---GACDASAKLWDVREGMCRQ------------- 220
Query: 734 SKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETL 793
TGH + + P+G A TG+ D T
Sbjct: 221 ------------------------------TFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 794 RFWNV 798
R +++
Sbjct: 251 RLFDL 255
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 132/298 (44%), Gaps = 20/298 (6%)
Query: 505 LDAPEL---QDDFYLNLVDWSSQNVLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSV 561
L +P++ DD + + + ++S + + +WSA T + R + G++
Sbjct: 108 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR----TLVGHTGGVW 163
Query: 562 AWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDMLSSGSRDRMILQ 621
+ R N++ G+ ++VW+ + +H L GHT+ V + + + SGSRD +
Sbjct: 164 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 223
Query: 622 RDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHL 681
D+ T Q L+GH V +++ D + + SG D + VW+ + + L T H
Sbjct: 224 WDIET--GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 279
Query: 682 AAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELV 741
V ++ + H G+ D IR W+ TG + + TG Q + LV
Sbjct: 280 NRVYSLQFDGIH-----VVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMELKDNILV 333
Query: 742 STHGYSQNQILVWKYPTLTQVAKLTG-HSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
S G + + + +W T + L G + ++ + + ++T + D T++ W++
Sbjct: 334 S--GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 12/154 (7%)
Query: 567 GNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDMLSSGSRDRMILQRDVRT 626
G V G + V+VWD +H L GHT RV +L ++G + SGS D I DV T
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308
Query: 627 PNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTY---TEHLAA 683
N L GH+ G++ + L SG D+ + +W++ + LQT +H +A
Sbjct: 309 GNCI--HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 684 VKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQ 717
V + ++ + + +S GT ++ W+ TG+
Sbjct: 365 VTCLQFNK-NFVITSSDDGT----VKLWDLKTGE 393
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 30/269 (11%)
Query: 564 NERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDMLSSGSRDRMILQRD 623
NE+G G+ G +++ ++ + + G R + N ++++ + +L D
Sbjct: 104 NEKGEFGGFGSVCGKIEI-EIKINHE-----GEVNRARYMPQNACVIATKTPSSDVLVFD 157
Query: 624 -VRTPNS-------QSERRLVGHRQEVCGLKWSPD-NQYLASGGNDNRLYVWNLHS---- 670
+ P+ Q + RL GH++E GL W+P+ N YL S +D+ + +W++++
Sbjct: 158 YTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 217
Query: 671 ---MSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTL---TGQPMQCVDT 724
+ +T H A V+ +AW H L G D+ + W+T T +P VD
Sbjct: 218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDA 275
Query: 725 GSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLT-QVAKLTGHSYRVLYLAMSPDGEA 783
+ N SE + G + + +W L ++ H + + SP E
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335
Query: 784 IVTGAG-DETLRFWNVFSKVRSQRESKSV 811
I+ +G D L W++ SK+ ++ ++
Sbjct: 336 ILASSGTDRRLHVWDL-SKIGEEQSTEDA 363
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 18/167 (10%)
Query: 561 VAWNER--GNLVAVGTHHGYVQVWDVSVAKQVHKLV-------GHTARVGALAWN---GD 608
++WN G L++ H + +WD++ + H+++ GHTA V +AW+
Sbjct: 187 LSWNPNLNGYLLSASDDH-TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQY-LASGGNDNRLYVW 666
+ S + D+ ++ D R N+ V H EV L ++P +++ LA+G D + +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 667 NLHSMS-PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWN 712
+L ++ L ++ H + + WSPH+ +LAS G DR + W+
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWD 350
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 24/154 (15%)
Query: 579 VQVWDV---SVAKQVHKLVGHTARVGALAWN---GDMLSSGSRDRMILQRDVRTPNSQSE 632
+ +WD + +K H + HTA V L++N +L++GS D+ + D+R +
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL- 314
Query: 633 RRLVGHRQEVCGLKWSPDNQ-YLASGGNDNRLYVWNLHSMSPLQTYTE------------ 679
H+ E+ ++WSP N+ LAS G D RL+VW+L + Q+ +
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374
Query: 680 --HLAAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
H A + +W+P+ ++ S + D ++ W
Sbjct: 375 GGHTAKISDFSWNPNEPWIICS--VSEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 30/269 (11%)
Query: 564 NERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDMLSSGSRDRMILQRD 623
NE+G G+ G +++ ++ + + G R + N ++++ + +L D
Sbjct: 106 NEKGEFGGFGSVCGKIEI-EIKINHE-----GEVNRARYMPQNACVIATKTPSSDVLVFD 159
Query: 624 -VRTPNS-------QSERRLVGHRQEVCGLKWSPD-NQYLASGGNDNRLYVWNLHS---- 670
+ P+ Q + RL GH++E GL W+P+ N YL S +D+ + +W++++
Sbjct: 160 YTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 219
Query: 671 ---MSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTL---TGQPMQCVDT 724
+ +T H A V+ +AW H L G D+ + W+T T +P VD
Sbjct: 220 HRVIDAKNIFTGHTAVVEDVAWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDA 277
Query: 725 GSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLT-QVAKLTGHSYRVLYLAMSPDGEA 783
+ N SE + G + + +W L ++ H + + SP E
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 337
Query: 784 IVTGAG-DETLRFWNVFSKVRSQRESKSV 811
I+ +G D L W++ SK+ ++ ++
Sbjct: 338 ILASSGTDRRLHVWDL-SKIGEEQSTEDA 365
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 18/167 (10%)
Query: 561 VAWNER--GNLVAVGTHHGYVQVWDVSVAKQVHKLV-------GHTARVGALAWN---GD 608
++WN G L++ H + +WD++ + H+++ GHTA V +AW+
Sbjct: 189 LSWNPNLNGYLLSASDDH-TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 247
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQY-LASGGNDNRLYVW 666
+ S + D+ ++ D R N+ V H EV L ++P +++ LA+G D + +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 667 NLHSMS-PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWN 712
+L ++ L ++ H + + WSPH+ +LAS G DR + W+
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWD 352
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 24/154 (15%)
Query: 579 VQVWDV---SVAKQVHKLVGHTARVGALAWN---GDMLSSGSRDRMILQRDVRTPNSQSE 632
+ +WD + +K H + HTA V L++N +L++GS D+ + D+R +
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL- 316
Query: 633 RRLVGHRQEVCGLKWSPDNQ-YLASGGNDNRLYVWNLHSMSPLQTYTE------------ 679
H+ E+ ++WSP N+ LAS G D RL+VW+L + Q+ +
Sbjct: 317 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 376
Query: 680 --HLAAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
H A + +W+P+ ++ S + D ++ W
Sbjct: 377 GGHTAKISDFSWNPNEPWIICS--VSEDNIMQVW 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 30/269 (11%)
Query: 564 NERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDMLSSGSRDRMILQRD 623
NE+G G+ G +++ ++ + + G R + N ++++ + +L D
Sbjct: 108 NEKGEFGGFGSVCGKIEI-EIKINHE-----GEVNRARYMPQNACVIATKTPSSDVLVFD 161
Query: 624 -VRTPNS-------QSERRLVGHRQEVCGLKWSPD-NQYLASGGNDNRLYVWNLHS---- 670
+ P+ Q + RL GH++E GL W+P+ N YL S +D+ + +W++++
Sbjct: 162 YTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 221
Query: 671 ---MSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTL---TGQPMQCVDT 724
+ +T H A V+ +AW H L G D+ + W+T T +P VD
Sbjct: 222 HRVIDAKNIFTGHTAVVEDVAWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDA 279
Query: 725 GSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLT-QVAKLTGHSYRVLYLAMSPDGEA 783
+ N SE + G + + +W L ++ H + + SP E
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 339
Query: 784 IVTGAG-DETLRFWNVFSKVRSQRESKSV 811
I+ +G D L W++ SK+ ++ ++
Sbjct: 340 ILASSGTDRRLHVWDL-SKIGEEQSTEDA 367
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 18/167 (10%)
Query: 561 VAWNER--GNLVAVGTHHGYVQVWDVSVAKQVHKLV-------GHTARVGALAWN---GD 608
++WN G L++ H + +WD++ + H+++ GHTA V +AW+
Sbjct: 191 LSWNPNLNGYLLSASDDH-TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 249
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQY-LASGGNDNRLYVW 666
+ S + D+ ++ D R N+ V H EV L ++P +++ LA+G D + +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 667 NLHSMS-PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWN 712
+L ++ L ++ H + + WSPH+ +LAS G DR + W+
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWD 354
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 24/154 (15%)
Query: 579 VQVWDV---SVAKQVHKLVGHTARVGALAWN---GDMLSSGSRDRMILQRDVRTPNSQSE 632
+ +WD + +K H + HTA V L++N +L++GS D+ + D+R +
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL- 318
Query: 633 RRLVGHRQEVCGLKWSPDNQ-YLASGGNDNRLYVWNLHSMSPLQTYTE------------ 679
H+ E+ ++WSP N+ LAS G D RL+VW+L + Q+ +
Sbjct: 319 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 378
Query: 680 --HLAAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
H A + +W+P+ ++ S + D ++ W
Sbjct: 379 GGHTAKISDFSWNPNEPWIICS--VSEDNIMQVW 410
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 127/297 (42%), Gaps = 37/297 (12%)
Query: 524 QNVLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWD 583
Q + S G + ++ A T + +L ++ A + V A++ +A + V++W+
Sbjct: 634 QRIASCGADKTLQVFKAETGE--KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN 691
Query: 584 VSVAKQVHKLVGHTARVGALAWNGD----MLSSGSRDRMILQRDVRTPNSQSERR--LVG 637
+ VH H+ +V + +L++GS D + D+ +Q E R + G
Sbjct: 692 SMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL----NQKECRNTMFG 747
Query: 638 HRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSP------------LQTYTEHLAA-V 684
H V ++SPD++ LAS D L +W+ S + L+ E + V
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV 807
Query: 685 KAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGS----QVCNLAWSKHSSEL 740
K +WS ++ + A I ++ T + + TG Q C+ + H
Sbjct: 808 KCCSWSADGARIMVA----AKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNH---- 859
Query: 741 VSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
++ SQ + +W + ++VA GH V + SPDG + +T + D+T+R W
Sbjct: 860 LAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 6/170 (3%)
Query: 647 WSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADR 706
+S D Q +AS G D L V+ + L H V A+S + + D+
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATC---SVDK 685
Query: 707 CIRFWNTLTGQPMQCVDTGSQVCNLA-WSKHSSELVSTHGYSQNQILVWKYPTLTQVAKL 765
++ WN++TG+ + D S+ N ++ S L+ G S + +W +
Sbjct: 686 KVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM 745
Query: 766 TGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQRESKSVLNLF 815
GH+ V + SPD + + + + D TL+ W+ S ++R+S +V F
Sbjct: 746 FGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA--NERKSINVKQFF 793
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 12/164 (7%)
Query: 638 HRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLL 697
H++ V ++++ D + L S +D + VWN + H VK + L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQ-LDKCIFLRGHQETVKDFRLLKNSRLLS 1066
Query: 698 ASGGGTADRCIRFWNTLTGQPMQ---CVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVW 754
S GT ++ WN +TG + C C++ S +++ ST +I W
Sbjct: 1067 WSFDGT----VKVWNIITGNKEKDFVCHQGTVLSCDI--SHDATKFSSTSADKTAKI--W 1118
Query: 755 KYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
+ L + +L GH+ V A S D + TG + +R WNV
Sbjct: 1119 SFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 46/229 (20%)
Query: 579 VQVWDVSVAKQVHKLVGH--TARVGALAWNGDMLSSGSRDRMILQRDVRTPNSQSERRLV 636
+QVW+ + K + L GH T + L N +LS S D + ++ T N E+ V
Sbjct: 1033 IQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLS-WSFDGTVKVWNIITGNK--EKDFV 1088
Query: 637 GHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGL 696
H+ V S D +S D +W+ + PL H V+ A+S L
Sbjct: 1089 CHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSV-DSTL 1147
Query: 697 LASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKY 756
LA+G + IR WN G+ + +C + S E +THG W
Sbjct: 1148 LATGDDNGE--IRIWNVSNGELL-------HLC----APLSEEGAATHGG-------W-- 1185
Query: 757 PTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQ 805
V L SPDG+ +++ G +++WNV + SQ
Sbjct: 1186 ---------------VTDLCFSPDGKMLISAGG--YIKWWNVVTGESSQ 1217
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 114/272 (41%), Gaps = 37/272 (13%)
Query: 543 SQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGA 602
S + + C L+ADG S +W++ +++WDV+ + + VGH + V +
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKT------------LRLWDVATGETYQRFVGHKSDVXS 112
Query: 603 LAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSP------DNQYL 654
+ + + SGSRD+ I V T Q L+GH V ++ P D+ +
Sbjct: 113 VDIDKKASXIISGSRDKTI---KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 655 ASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTL 714
S GND + WNL+ + H + + + SP L+AS G D I WN
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIXLWNLA 226
Query: 715 TGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVW----KYPTLTQVAKLTGHSY 770
+ + +V +LA+S + L + + I V+ +Y + G+S
Sbjct: 227 AKKAXYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 771 ----RVLYLAMSPDGEAIVTGAGDETLRFWNV 798
+ LA S DG+ + G D +R W V
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 15/220 (6%)
Query: 593 LVGHTARVGALAWNG---DMLSSGSRDRMILQRDVRTPNSQ---SERRLVGHRQEVCGLK 646
L GH V +LA + ++L S SRD+ ++ + + + R GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 647 WSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADR 706
+ D Y S D L +W++ + Q + H + V ++ +++ G+ D+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS---GSRDK 129
Query: 707 CIRFWNTLTGQPMQCV----DTGSQVCNLAWSKHSSELVSTHGYSQNQ-ILVWKYPTLTQ 761
I+ W T+ GQ + + D SQV + K + V+ ++ + W
Sbjct: 130 TIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
A GH+ + L SPDG I + D + WN+ +K
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 762 VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQR 806
V GHS+ V ++ DG ++ + D+TLR W+V + QR
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR 102
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 19/222 (8%)
Query: 592 KLVGHTARVGALAW-----NGDMLSSGSRDRMILQRDVRTPNSQSE-------RRLVGHR 639
+L GH V +LA + S SRD+ +L SE RRL GH
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 640 QEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLAS 699
V + S + + S D+ L +WNL + + H V ++A+SP + +++
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 700 GGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSEL---VSTHGYSQNQILVWKY 756
G D +R WN + G+ M + G+ ++ + S L V G N + VW
Sbjct: 128 G---RDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL 183
Query: 757 PTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
T V L GH+ V + +SPDG + D R W++
Sbjct: 184 ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 18/252 (7%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD--MLSSGSR 615
V+ VA + GN + +++W++ + +K +GHT V ++A++ D + SG R
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 616 DRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSP--DNQYLASGGNDNRLYVWNLHSMSP 673
D + +V+ + R H V +++SP D + SGG DN + VW+L +
Sbjct: 130 DNALRVWNVKGECMHTLSRGA-HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 674 LQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGS---QVC- 729
+ H V ++ SP L AS D R W+ G+ + + G+ Q+C
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGS-LCAS--SDKDGVARLWDLTKGEALSEMAAGAPINQICF 245
Query: 730 --NLAWSKHSSEL-VSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVT 786
N W ++E + I+V P K+ + +A S DG + +
Sbjct: 246 SPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIV---PECVSIAWSADGSTLYS 302
Query: 787 GAGDETLRFWNV 798
G D +R W V
Sbjct: 303 GYTDNVIRVWGV 314
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 22/216 (10%)
Query: 609 MLSSGSRDRMIL-----QRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRL 663
+L SGSRD+ ++ + + + L GH V L S +N + S D L
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 664 YVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVD 723
+W+L + + + + H + V ++A+SP + +L++G A+R I+ WN L +
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG---AEREIKLWNILGECKFSSAE 157
Query: 724 TGSQVCNLAWSKHSSELVSTHGYS-----------QNQILVWKYPTLTQVA-KLTGHSYR 771
+ ++ ++S + S + ++ VW T Q+ H
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN--TNFQIRYTFKAHESN 215
Query: 772 VLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQRE 807
V +L++SP+G+ I TG D+ L W++ + QRE
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 29/175 (16%)
Query: 579 VQVWDVSVAKQVHKLVGHTARVGALAWNGD---MLSSGSRDRMILQRDVRTPNSQSERRL 635
+++WD+ + VGH + V ++A++ D +LS+G+ +R+++ N E +
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA------EREIKLWNILGECKF 153
Query: 636 VGHRQE-----VCGLKWSPDNQ----------YLASGGNDNRLYVWNLHSMSPLQTYTEH 680
+E V +++SP + Y AS G D RL VWN + T+ H
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAH 212
Query: 681 LAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLT-GQPMQCVDTGSQVCNLAWS 734
+ V ++ SP+ +A+GG D+ + W+ L P + D GS + +A++
Sbjct: 213 ESNVNHLSISPNGK-YIATGG--KDKKLLIWDILNLTYPQREFDAGSTINQIAFN 264
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 628 NSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAI 687
N Q H V L SP+ +Y+A+GG D +L +W++ +++ Q + + + I
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI 261
Query: 688 AWSPHHHGLLASGGGTADRCIRFWN----------TLTGQPMQCVD----TGSQVCNLAW 733
A++P +A G D+ ++ +N T+ +P+ + Q +LAW
Sbjct: 262 AFNPKLQ-WVAVG---TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317
Query: 734 SKHSSELVSTHGYSQNQILVWKYPT 758
+ +L + G++ I + + T
Sbjct: 318 NALGKKLFA--GFTDGVIRTFSFET 340
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 108/259 (41%), Gaps = 20/259 (7%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD--MLSSGSR 615
V+ V + G G+ G +++WD++ + VGHT V ++A++ D + SGSR
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 616 DRMIL---QRDVRTPNSQSERRLVGHRQEVCGLKWSPD--NQYLASGGNDNRLYVWNLHS 670
D+ I V Q E H + V +++SP+ N + S G D + VWNL +
Sbjct: 149 DKTIKLWNTLGVCKYTVQDES----HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 671 MSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCN 730
+ H + + SP L ASGG D W+ G+ + +D G +
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGS-LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINA 261
Query: 731 LAWSKHSSELVSTHGYS------QNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAI 784
L +S + L + G S + +I+V + + LA S DG+ +
Sbjct: 262 LCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321
Query: 785 VTGAGDETLRFWNVFSKVR 803
G D +R W V R
Sbjct: 322 FAGYTDNLVRVWQVTIGTR 340
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 98/238 (41%), Gaps = 13/238 (5%)
Query: 570 VAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNG---DMLSSGSRDRMI----LQR 622
V +GT + Y Q L GH V +A DM+ S SRD+ I L R
Sbjct: 11 VDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR 70
Query: 623 DVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLA 682
D T +R L GH V + S D Q+ SG D L +W+L + + + + H
Sbjct: 71 D-ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 129
Query: 683 AVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ--VCNLAWSKHSSEL 740
V ++A+S + +++ G+ D+ I+ WNTL D V + +S +SS
Sbjct: 130 DVLSVAFSSDNRQIVS---GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186
Query: 741 VSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
+ + VW GH+ + + +SPDG +G D W++
Sbjct: 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 753 VWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFS--KVRSQRESKS 810
+W T T + GH+ VL +A S D IV+G+ D+T++ WN K Q ES S
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 108/259 (41%), Gaps = 20/259 (7%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD--MLSSGSR 615
V+ V + G G+ G +++WD++ + VGHT V ++A++ D + SGSR
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 616 DRMIL---QRDVRTPNSQSERRLVGHRQEVCGLKWSPD--NQYLASGGNDNRLYVWNLHS 670
D+ I V Q E H + V +++SP+ N + S G D + VWNL +
Sbjct: 126 DKTIKLWNTLGVCKYTVQDES----HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 671 MSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCN 730
+ H + + SP L ASGG D W+ G+ + +D G +
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGS-LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINA 238
Query: 731 LAWSKHSSELVSTHGYS------QNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAI 784
L +S + L + G S + +I+V + + LA S DG+ +
Sbjct: 239 LCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 298
Query: 785 VTGAGDETLRFWNVFSKVR 803
G D +R W V R
Sbjct: 299 FAGYTDNLVRVWQVTIGTR 317
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 10/197 (5%)
Query: 608 DMLSSGSRDRMI----LQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRL 663
DM+ S SRD+ I L RD T +R L GH V + S D Q+ SG D L
Sbjct: 29 DMILSASRDKTIIMWKLTRD-ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 87
Query: 664 YVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVD 723
+W+L + + + + H V ++A+S + +++ G+ D+ I+ WNTL D
Sbjct: 88 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDKTIKLWNTLGVCKYTVQD 144
Query: 724 TGSQ--VCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDG 781
V + +S +SS + + VW GH+ + + +SPDG
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 782 EAIVTGAGDETLRFWNV 798
+G D W++
Sbjct: 205 SLCASGGKDGQAMLWDL 221
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 593 LVGHTARVG--ALAWNGDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPD 650
L GH+ V ++ +G SGS D + D+ T + RR VGH ++V + +S D
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTT--GTTTRRFVGHTKDVLSVAFSSD 116
Query: 651 NQYLASGGNDNRLYVWNLHSMSPLQTYTE-HLAAVKAIAWSPHHHGLLASGGGTADRCIR 709
N+ + SG D + +WN + E H V + +SP+ + G D+ ++
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-WDKLVK 175
Query: 710 FWN 712
WN
Sbjct: 176 VWN 178
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 753 VWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQRESKSVL 812
+W T T + GH+ VL +A S D IV+G+ D+T++ WN + + +S
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 148
Query: 813 NLFSSIR 819
S +R
Sbjct: 149 EWVSCVR 155
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 18/167 (10%)
Query: 561 VAWNER--GNLVAVGTHHGYVQVWDVSVAKQVHKLV-------GHTARVGALAWN---GD 608
++WN G+L++ H V +WD++ + K+V GH+A V +AW+
Sbjct: 185 LSWNSNLSGHLLSASDDH-TVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQY-LASGGNDNRLYVW 666
+ S + D+ ++ D R+ + LV H EV L ++P +++ LA+G D + +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 667 NLHSMS-PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWN 712
+L ++ L T+ H + + WSPH+ +LAS G DR + W+
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG--TDRRLNVWD 348
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 634 RLVGHRQEVCGLKWSPD-NQYLASGGNDNRLYVWNLHS-------MSPLQTYTEHLAAVK 685
RL GH++E GL W+ + + +L S +D+ + +W++++ + +T H A V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 686 AIAWSPHHHGLLASGGGTADRCIRFWNT---LTGQPMQCVDTGSQVCNLAWSKHSSELVS 742
+AW H L G D+ + W+T T +P VD + N SE +
Sbjct: 234 DVAWHLLHESLF--GSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 743 THGYSQNQILVWKYPTLT-QVAKLTGHSYRVLYLAMSPDGEAIVTGAG-DETLRFWNVFS 800
G + + +W L ++ H + + SP E I+ +G D L W++ S
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL-S 350
Query: 801 KVRSQRESKSV 811
K+ ++ ++
Sbjct: 351 KIGEEQSAEDA 361
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 24/154 (15%)
Query: 579 VQVWDV---SVAKQVHKLVGHTARVGALAWN---GDMLSSGSRDRMILQRDVRTPNSQSE 632
+ +WD + +K H + HTA V L++N +L++GS D+ + D+R +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL- 312
Query: 633 RRLVGHRQEVCGLKWSPDNQ-YLASGGNDNRLYVWNLHSMSPLQTYTE------------ 679
H+ E+ + WSP N+ LAS G D RL VW+L + Q+ +
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 680 --HLAAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
H A + +W+P+ ++ S + D ++ W
Sbjct: 373 GGHTAKISDFSWNPNEPWVICS--VSEDNIMQIW 404
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 15/231 (6%)
Query: 575 HHGYVQVWDVSVAKQVHKL-VGHT-ARVGALAWNGDMLSSGSRDRMILQRDVRTPNSQSE 632
+ G V++W+ +V + V T R G + + GS D I R N +
Sbjct: 33 YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI-----RVFNYNTG 87
Query: 633 RRLV---GHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPL-QTYTEHLAAVKAIA 688
++V H + + P Y+ SG +D + +WN + L QT+ H V +A
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 689 WSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ--VCNLAWSKHSSELVSTHGY 746
++P ASG DR ++ W+ P + TG + V + + +
Sbjct: 148 FNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 747 SQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
I +W Y T + VA L GH V + P I++G+ D TL+ WN
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 15/231 (6%)
Query: 575 HHGYVQVWDVSVAKQVHKL-VGHT-ARVGALAWNGDMLSSGSRDRMILQRDVRTPNSQSE 632
+ G V++W+ +V + V T R G + + GS D I R N +
Sbjct: 33 YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI-----RVFNYNTG 87
Query: 633 RRLV---GHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPL-QTYTEHLAAVKAIA 688
++V H + + P Y+ SG +D + +WN + L QT+ H V +A
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 689 WSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ--VCNLAWSKHSSELVSTHGY 746
++P ASG DR ++ W+ P + TG + V + + +
Sbjct: 148 FNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 747 SQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
I +W Y T + VA L GH V + P I++G+ D TL+ WN
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 18/167 (10%)
Query: 561 VAWNER--GNLVAVGTHHGYVQVWDVSVAKQVHKLV-------GHTARVGALAWN---GD 608
++WN G+L++ H + +WD+S + K+V GHTA V ++W+
Sbjct: 183 LSWNPNLSGHLLSASDDH-TICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 241
Query: 609 MLSSGSRDRMILQRDVRTPN-SQSERRLVGHRQEVCGLKWSPDNQY-LASGGNDNRLYVW 666
+ S + D+ ++ D R+ N S+ + H EV L ++P +++ LA+G D + +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 667 NLHSMS-PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWN 712
+L ++ L ++ H + + WSPH+ +LAS G DR + W+
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLNVWD 346
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 16/186 (8%)
Query: 634 RLVGHRQEVCGLKWSPD-NQYLASGGNDNRLYVWNLHS-------MSPLQTYTEHLAAVK 685
RL GH++E GL W+P+ + +L S +D+ + +W++ + + +T H A V+
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 686 AIAWSPHHHGLLASGGGTADRCIRFWNTL---TGQPMQCVDTGSQVCNLAWSKHSSELVS 742
++W H L G D+ + W+T T +P VD + N SE +
Sbjct: 232 DVSWHLLHESLF--GSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFIL 289
Query: 743 THGYSQNQILVWKYPTLT-QVAKLTGHSYRVLYLAMSPDGEAIVTGAG-DETLRFWNVFS 800
G + + +W L ++ H + + SP E I+ +G D L W++ S
Sbjct: 290 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL-S 348
Query: 801 KVRSQR 806
K+ ++
Sbjct: 349 KIGEEQ 354
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 24/154 (15%)
Query: 579 VQVWDV---SVAKQVHKLVGHTARVGALAWN---GDMLSSGSRDRMILQRDVRTPNSQSE 632
+ +WD + +K H + HTA V L++N +L++GS D+ + D+R +
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL- 310
Query: 633 RRLVGHRQEVCGLKWSPDNQ-YLASGGNDNRLYVWNLHSMSPLQT--------------Y 677
H+ E+ ++WSP N+ LAS G D RL VW+L + Q+ +
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIH 370
Query: 678 TEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
H A + +W+P+ ++ S + D ++ W
Sbjct: 371 GGHTAKISDFSWNPNEPWVICS--VSEDNIMQVW 402
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 16/250 (6%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVS------VAKQVHKLVGHTARVGALAW-NGDM- 609
V + A+ G +A G V+ ++ +A + + HT + A ++ N DM
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 610 LSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPD--NQYLASGGNDNRLYVWN 667
+ + S D DV + Q + GH +V L +P SGG D + VW+
Sbjct: 169 ILTASGDGTCALWDVES--GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 668 LHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ 727
+ S +Q + H + V ++ + P + G+ D R ++ + + S
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFAS---GSDDATCRLYDLRADREVAIYSKESI 283
Query: 728 VCNLAWSKHS-SELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVT 786
+ + S S + GY+ I VW ++V+ L GH RV L +SPDG A +
Sbjct: 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 787 GAGDETLRFW 796
G+ D TLR W
Sbjct: 344 GSWDHTLRVW 353
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 111/274 (40%), Gaps = 26/274 (9%)
Query: 548 LCDLSADGNSVTSVAWNERGNLVAVGTHH--GYVQVWDVSVAKQVHKLVGHTARVGALAW 605
L L ++ S+ ER L V H V+ V K L GH +V + W
Sbjct: 13 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 72
Query: 606 NGDM--LSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRL 663
D + S S+D ++ D T N + + C ++P +A GG DN+
Sbjct: 73 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA--YAPSGCAIACGGLDNKC 130
Query: 664 YVW------NLHSMSPLQTYTEHLAAVKAIAWSPHHHGLL-ASGGGTADRCIRFWNTLTG 716
V+ N + + ++ H + A +++ +L ASG GT W+ +G
Sbjct: 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC----ALWDVESG 186
Query: 717 QPMQCVDT-GSQVC--NLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVL 773
Q +Q G+ V +LA S+ + VS G + +VW + V H V
Sbjct: 187 QLLQSFHGHGADVLCLDLAPSETGNTFVS--GGCDKKAMVWDMRSGQCVQAFETHESDVN 244
Query: 774 YLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQRE 807
+ P G+A +G+ D T R ++ +R+ RE
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYD----LRADRE 274
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 24/217 (11%)
Query: 598 ARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQSERRLV------GHRQEVCGLKWSP 649
+R LAWN G +L+S DR I R ++ + + GH++ V + WSP
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRI-----RIWGTEGDSWICKSVLSEGHQRTVRKVAWSP 71
Query: 650 DNQYLASGGNDNRLYVW--NLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRC 707
YLAS D +W N + T H VK++AW+P + LLA+ + D+
Sbjct: 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATC--SRDKS 128
Query: 708 IRFWNTLTGQPMQCVDT----GSQVCNLAWSKHSSELVSTHGYSQN-QILVWKYPTLTQV 762
+ W +CV V ++ W S EL+++ Y ++ +
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCC 187
Query: 763 AKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVF 799
A L GH V LA P G+ + + + D T+R W +
Sbjct: 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 114/275 (41%), Gaps = 39/275 (14%)
Query: 557 SVTSVAWNERGNLVAVGTHHGYVQVW--DVSVAKQVHKLVGHTARVGALAW--NGDMLSS 612
+V VAW+ GN +A + +W + + V L GH V ++AW +G++L++
Sbjct: 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 613 GSRDRMILQRDVRTPNS-QSERRLVGHRQEVCGLKWSPDNQYLASGGNDN--RLYVWNLH 669
SRD+ + +V + + L H Q+V + W P + LAS D+ +LY
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED 182
Query: 670 SMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNT-LTGQPMQCVDTGSQ- 727
T H + V ++A+ P L + + DR +R W L G +GS
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQRLASC---SDDRTVRIWRQYLPGNEQGVACSGSDP 239
Query: 728 ----VC-----------NLAWSKHSSELVSTHGYSQNQILVW--------KYPTLTQVAK 764
+C ++AW + + L + G + I V+ + PT + A
Sbjct: 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACG--DDAIRVFQEDPNSDPQQPTFSLTAH 297
Query: 765 L-TGHSYRVLYLAMSPDGEAIVTGAGDE-TLRFWN 797
L HS V +A +P ++ D+ + FW
Sbjct: 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 18/167 (10%)
Query: 561 VAWNER--GNLVAVGTHHGYVQVWDVSVAKQVHKLV-------GHTARVGALAWN---GD 608
++WN G+L++ H V +WD++ + K+V GH+A V +AW+
Sbjct: 185 LSWNSNLSGHLLSASDDH-TVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQY-LASGGNDNRLYVW 666
+ S + D+ + D R+ + LV H EV L ++P +++ LA+G D + +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 667 NLHSMS-PLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWN 712
+L ++ L T+ H + + WSPH+ +LAS G DR + W+
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG--TDRRLNVWD 348
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 634 RLVGHRQEVCGLKWSPD-NQYLASGGNDNRLYVWNLHS-------MSPLQTYTEHLAAVK 685
RL GH++E GL W+ + + +L S +D+ + +W++++ + +T H A V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 686 AIAWSPHHHGLLASGGGTADRCIRFWNT---LTGQPMQCVDTGSQVCNLAWSKHSSELVS 742
+AW H L G D+ + W+T T +P VD + N SE +
Sbjct: 234 DVAWHLLHESLF--GSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 743 THGYSQNQILVWKYPTLT-QVAKLTGHSYRVLYLAMSPDGEAIVTGAG-DETLRFWNVFS 800
G + + +W L ++ H + + SP E I+ +G D L W++ S
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL-S 350
Query: 801 KVRSQRESKSV 811
K+ ++ ++
Sbjct: 351 KIGEEQSAEDA 361
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 579 VQVWDV---SVAKQVHKLVGHTARVGALAWN---GDMLSSGSRDRMILQRDVRTPNSQSE 632
+ +WD + +K H + HTA V L++N +L++GS D+ + D+R +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL- 312
Query: 633 RRLVGHRQEVCGLKWSPDNQ-YLASGGNDNRLYVWNLHSMSPLQTYTE------------ 679
H+ E+ + WSP N+ LAS G D RL VW+L + Q+ +
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 680 --HLAAVKAIAWSP 691
H A + +W+P
Sbjct: 373 GGHTAKISDFSWNP 386
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 15/231 (6%)
Query: 575 HHGYVQVWDVSVAKQVHKL-VGHT-ARVGALAWNGDMLSSGSRDRMILQRDVRTPNSQSE 632
+ G V++W+ +V + V T R G + + GS D I R N +
Sbjct: 33 YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI-----RVFNYNTG 87
Query: 633 RRLV---GHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPL-QTYTEHLAAVKAIA 688
++V H + + P Y+ SG +D + +WN + L QT+ H V +A
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 689 WSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ--VCNLAWSKHSSELVSTHGY 746
++P ASG DR ++ W+ P + TG + V + + +
Sbjct: 148 FNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 747 SQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
I +W Y T + VA L GH V + P I++G+ D TL+ WN
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 15/231 (6%)
Query: 575 HHGYVQVWDVSVAKQVHKL-VGHT-ARVGALAWNGDMLSSGSRDRMILQRDVRTPNSQSE 632
+ G V++W+ +V + V T R G + + GS D I R N +
Sbjct: 33 YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI-----RVFNYNTG 87
Query: 633 RRLV---GHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPL-QTYTEHLAAVKAIA 688
++V H + + P Y+ SG +D + +WN + L QT+ H V +A
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 689 WSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQ--VCNLAWSKHSSELVSTHGY 746
++P ASG DR ++ W+ P + TG + V + + +
Sbjct: 148 FNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 747 SQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
I +W Y T + VA L GH V + P I++G+ D TL+ WN
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 59/238 (24%)
Query: 581 VWDVSVAKQVHKL-----VGHTARVGALA---WNGDMLSSGSRDRMILQRDVRTPNSQSE 632
+WDV+ +++ GHTA V +L+ N +M SGS D + D+R S++
Sbjct: 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI-TSRAV 242
Query: 633 RRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEH-------LAAVK 685
R GH ++ +K+ PD Q +G +D ++++ + LQ Y L V
Sbjct: 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT 302
Query: 686 AIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHG 745
++A+S L A G ++ W+TL +E+V G
Sbjct: 303 SVAFSISGRLLFA---GYSNGDCYVWDTLL----------------------AEMVLNLG 337
Query: 746 YSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVR 803
QN H R+ L +S DG A+ TG+ D+ L+ W FS R
Sbjct: 338 TLQNS-----------------HEGRISCLGLSSDGSALCTGSWDKNLKIW-AFSGHR 377
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 24/191 (12%)
Query: 633 RRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPH 692
R L GH +V L W+P+ ++ S D RL VWN + H V A++P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP- 118
Query: 693 HHGLLASGGGTADRCIRFWNTLTGQ-------PMQCVDTG----SQVCNLAWSKHSSELV 741
+G + GG C F L+ Q P+ V TG + C + L+
Sbjct: 119 -NGQSVACGGLDSACSIF--NLSSQADRDGNMPVSRVLTGHKGYASSCQYV-PDQETRLI 174
Query: 742 STHGYSQNQILVWKYPTLTQVAKL-----TGHSYRVLYLAM-SPDGEAIVTGAGDETLRF 795
+ G ++W T +++ +GH+ VL L++ S + ++G+ D T+R
Sbjct: 175 T--GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 796 WNVFSKVRSQR 806
W++ R+ R
Sbjct: 233 WDLRITSRAVR 243
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 31/227 (13%)
Query: 593 LVGHTARVGALAWNGDM--LSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPD 650
L GH+ +V +L W + + S S+D ++ + T SQ + H V ++P+
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT--SQKTHAIKLHCPWVMECAFAPN 119
Query: 651 NQYLASGGNDNRLYVWNLHS-------MSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGT 703
Q +A GG D+ ++NL S M + T H + + P L +G G
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG- 178
Query: 704 ADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVS-----------THGYSQNQIL 752
D+ W+ TGQ + GS+ S H+++++S G +
Sbjct: 179 -DQTCVLWDVTTGQRISIF--GSEFP----SGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 753 VWKYPTLTQVAKL-TGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
+W ++ + GH + + PDG+ TG+ D T R +++
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 561 VAWNERGNLVAVGTHHGYVQVWDVSVAKQVH-KLVGHTARVGALAW--NGDMLSSGSRDR 617
VA + VAVG V V+ +S A K + H A + ++A+ NG L + + R
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513
Query: 618 MILQRDVRTPNSQSERRL-VGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS--PL 674
++ V + H +V + WSPDN LA+G DN + VWN++ S P+
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573
Query: 675 QTYTEH-LAAVKAIAWSPHHHGLLASGGGTADRCIRFWN 712
H +++V ++ W + + S G D I+FWN
Sbjct: 574 IIKGAHAMSSVNSVIW--LNETTIVSAG--QDSNIKFWN 608
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 638 HRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTE-------HLAAVKAIAWS 690
H + V ++++PD AS G D + ++N + + + H +V + WS
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 691 PHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQV----CNLAWSKHSSELVSTHGY 746
P + ++ +AD+ I+ WN T + + + G+++ + W+K + +S +G+
Sbjct: 249 PDGTKIASA---SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305
Query: 747 SQNQILVWKYPTLTQVAKLT-GHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQ 805
+ + P L + ++ GH+ + L+ S DG+ + + + + W++ + + ++
Sbjct: 306 -----INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 52/241 (21%)
Query: 567 GNLVAVGTHHGYVQVWDVSVAKQVHK--LVGHTARVGALAWNGD---MLSSG-SRDRM-- 618
G A G HG V++WD + + K + + V ++W+ + + + G R+R
Sbjct: 71 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130
Query: 619 ILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQY-LASGGNDNRLYVWNLHSMSPLQTY 677
+ D T N L G + + + + P + + SG +DN + ++ T+
Sbjct: 131 VFLFDTGTSNGN----LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186
Query: 678 TEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHS 737
EH V ++ ++P L AS GG D I +N + G TG
Sbjct: 187 GEHTKFVHSVRYNP-DGSLFASTGG--DGTIVLYNGVDG-----TKTG------------ 226
Query: 738 SELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
V++ +L VA HS V L SPDG I + + D+T++ WN
Sbjct: 227 ---------------VFEDDSLKNVA----HSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Query: 798 V 798
V
Sbjct: 268 V 268
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 520 DWSSQNVLSVGLG----SCVYLWSACTSQVTRLCDLSADGNSVTSVAWN-ERGNLVAVGT 574
D S+ + +VG G V+L+ TS +L+ ++ SV + R + G+
Sbjct: 112 DSESKRIAAVGEGRERFGHVFLFDTGTSN----GNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 575 HHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD---MLSSGSRDRMILQRDVRTPNS-- 629
V +++ K HT V ++ +N D S+G ++L V +
Sbjct: 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227
Query: 630 --QSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQT 676
+ V H V GL WSPD +AS D + +WN+ ++ +T
Sbjct: 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 638 HRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHL--AAVKAIAWSPHHHG 695
H + K SP Y ASG + +W+ + + T + VK I+W
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 696 LLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVS---------THGY 746
+ A G G RF + DTG+ NL + V G
Sbjct: 118 IAAVGEGRE----RFGHVF------LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 747 SQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
N + +++ P + H+ V + +PDG + GD T+ +N
Sbjct: 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 26/216 (12%)
Query: 586 VAKQVHKLVGHTARVGALAWNGDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGL 645
V H + H A L + G L++ S D+ I +V + L GH V +
Sbjct: 3 VIANAHNELIHDA---VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV 59
Query: 646 KWS--PDNQYLASGGNDNRLYVWNLHSM--SPLQTYTEHLAAVKAIAWSPHHHG---LLA 698
W+ LAS D ++ +W + S + + H A+V ++ W+PH +G L+A
Sbjct: 60 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119
Query: 699 SGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTH-----------GYS 747
S G + F T P+ V + +W+ + E H G +
Sbjct: 120 SSDGKV-SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 748 QNQILVWKYPTLTQV----AKLTGHSYRVLYLAMSP 779
N + +WKY + Q + L GHS V +A SP
Sbjct: 179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 30/234 (12%)
Query: 568 NLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW-NGDMLSSGSRDRMILQRDVRT 626
N V G ++V+D K + +L GH V AL + +G +L SGS DR + D++
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK- 191
Query: 627 PNSQSERRLVGHRQEVCGLKWSP--DNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAV 684
GH V L + +Y+ +G DN L+VW L S + + E
Sbjct: 192 -KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE----- 245
Query: 685 KAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTH 744
H + L+ T + F L G M V T S N+ S
Sbjct: 246 ------EHDYPLVFH---TPEENPYFVGVLRGH-MASVRTVSGHGNIVVS---------- 285
Query: 745 GYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
G N ++VW + + L+GH+ R+ + + ++ + D T+R W++
Sbjct: 286 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 567 GNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDMLS--SGSRDRMILQRDV 624
GN+V G++ + VWDV+ K ++ L GHT R+ + ++ + S S D I D+
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Query: 625 RTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAV 684
N + L GH V L+ S +++L S D + W+ + S + ++ H +
Sbjct: 340 E--NGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--RKFSYHHTNL 393
Query: 685 KAIAWSPHHHGLLASG 700
AI +L SG
Sbjct: 394 SAITTFYVSDNILVSG 409
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 74/197 (37%), Gaps = 31/197 (15%)
Query: 548 LCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW-- 605
L LS V ++ + G LV+ G+ V+VWD+ H GH + V L
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVS-GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213
Query: 606 --NGDMLSSGSRDRMI----LQRDVRTPNSQSERR-----------------LVGHRQEV 642
N + +GSRD + L ++ P+ E L GH V
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273
Query: 643 CGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGG 702
+ S + SG DN L VW++ M L + H + + + +++
Sbjct: 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA--- 328
Query: 703 TADRCIRFWNTLTGQPM 719
+ D IR W+ G+ M
Sbjct: 329 SMDTTIRIWDLENGELM 345
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 551 LSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD-- 608
L G + S+A++ G +A G G + ++D++ K +H L GH + +L ++ D
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
+L + S D I DV+ N L GH V + + PD+ + S +D + VW++
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAG--TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Query: 669 HSMSPLQTYTEHLAAVKAIAWSPHHHGLLASG 700
+ + + T+ +H V + ++ + +++ G
Sbjct: 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 122/286 (42%), Gaps = 24/286 (8%)
Query: 522 SSQNVLSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQV 581
+S+ V++ L V +W ++ L V SV + + A + ++++
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 582 WDVSVAKQVHKLVGHTARVGALAWNGD--MLSSGSRDRMILQRDVRTPNSQSERRLVGHR 639
WD+ KQ+ + LA++ D L++G+ + V + + E L
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES--GKKEYSLDTRG 164
Query: 640 QEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLAS 699
+ + + +SPD +YLASG D + ++++ + L T H ++++ +SP L+ +
Sbjct: 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA 224
Query: 700 GGGTADRCIRFWN--------TLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQI 751
+ D I+ ++ TL+G S V N+A+ + VS+ S +
Sbjct: 225 ---SDDGYIKIYDVQHANLAGTLSGHA-------SWVLNVAFCPDDTHFVSS--SSDKSV 272
Query: 752 LVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
VW T T V H +V + + +G IV+ D+ + ++
Sbjct: 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 119/269 (44%), Gaps = 38/269 (14%)
Query: 553 ADGNSVTSVAWN----ERGNLVAVGTHHGYVQVW-------DVSVAKQVHKL------VG 595
A +++ SVAW E V G+ V+VW D+ + + H+L +
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 596 HTARVGALAWNGDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLA 655
HT + A S S D I D+ N + + + + L +SPD+QYLA
Sbjct: 90 HTLPIAA---------SSSLDAHIRLWDLE--NGKQIKSIDAGPVDAWTLAFSPDSQYLA 138
Query: 656 SGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLT 715
+G + ++ ++ + S + + +IA+SP LASG D I ++ T
Sbjct: 139 TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK-YLASG--AIDGIINIFDIAT 195
Query: 716 GQPMQCVDTGSQ-VCNLAWSKHSSELV--STHGYSQNQILVWKYPTLTQVAKLTGHSYRV 772
G+ + ++ + + +L +S S LV S GY I ++ L+GH+ V
Sbjct: 196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY----IKIYDVQHANLAGTLSGHASWV 251
Query: 773 LYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
L +A PD V+ + D++++ W+V ++
Sbjct: 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 26/216 (12%)
Query: 586 VAKQVHKLVGHTARVGALAWNGDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGL 645
V H + H A L + G L++ S D+ I +V + L GH V +
Sbjct: 5 VIANAHNELIHDA---VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV 61
Query: 646 KWS-PD-NQYLASGGNDNRLYVWNLHS--MSPLQTYTEHLAAVKAIAWSPHHHG---LLA 698
W+ P LAS D ++ +W + S + + H A+V ++ W+PH +G L+A
Sbjct: 62 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 121
Query: 699 SGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTH-----------GYS 747
S G + F T P+ V + +W+ + E H G +
Sbjct: 122 SSDGKV-SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180
Query: 748 QNQILVWKYPTLTQV----AKLTGHSYRVLYLAMSP 779
N + +WKY + Q + L GHS V +A SP
Sbjct: 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 15/251 (5%)
Query: 577 GYVQVWDVS------VAKQVHKL-VGHTARVGALAWNGDMLSSGSRDRMILQRDVRTPNS 629
G V+VWD+S Q+ L + R L +G L G + D+ P
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 630 QSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAW 689
+ + L L SPD++ S +D + VW+LH+ + ++ + H I
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191
Query: 690 SPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQN 749
S L G D +R W+ G+ +Q D SQ+ +L + L S
Sbjct: 192 SNDGTKLWTGG---LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV 248
Query: 750 QILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV--FSKVRSQRE 807
++L P Q L H VL L + G+ V+ D L W + + +E
Sbjct: 249 EVLHVNKPDKYQ---LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 305
Query: 808 SKSVLNLFSSI 818
S SVL+ S+
Sbjct: 306 SSSVLSCDISV 316
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 21/234 (8%)
Query: 586 VAKQVHKLVGHTARVGALAW---NGDMLSSGSRDRMILQRDVRT-----PNSQSERRLVG 637
V K V + GHTA V +AW N ++++SGS D ++ ++ P + L G
Sbjct: 70 VDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 638 HRQEVCGLKWSPDNQ-YLASGGNDNRLYVWNLHSMSPLQTYTE--HLAAVKAIAWSPHHH 694
H + V + W P Q L S G DN + VW++ + + + T H + ++ WS
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 695 GLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSE-LVSTHGY---SQNQ 750
+ S D+ +R G + D + + SE + T G+ S+ Q
Sbjct: 190 LICTS---CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ 246
Query: 751 ILVWKYPTLTQVAKLT--GHSYRVLYLAMSPDGEAI-VTGAGDETLRFWNVFSK 801
+ +W L + L S VL PD + + G GD ++R++ + S+
Sbjct: 247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 558 VTSVAWNERG-NLVAVGTHHGYVQVWDVS-------VAKQVHKLVGHTARVGALAWN--- 606
V +AW N++A G+ V VW++ + + V L GHT RVG +AW+
Sbjct: 84 VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 607 GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYV 665
++L S D +IL DV T + H + + WS D + + D R+ V
Sbjct: 144 QNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 21/234 (8%)
Query: 586 VAKQVHKLVGHTARVGALAW---NGDMLSSGSRDRMILQRDVRT-----PNSQSERRLVG 637
V K V + GHTA V +AW N ++++SGS D ++ ++ P + L G
Sbjct: 70 VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 638 HRQEVCGLKWSPDNQ-YLASGGNDNRLYVWNLHSMSPLQTYTE--HLAAVKAIAWSPHHH 694
H + V + W P Q L S G DN + VW++ + + + T H + ++ WS
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 695 GLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSE-LVSTHGY---SQNQ 750
+ S D+ +R G + D + + SE + T G+ S+ Q
Sbjct: 190 LICTS---CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ 246
Query: 751 ILVWKYPTLTQVAKLT--GHSYRVLYLAMSPDGEAI-VTGAGDETLRFWNVFSK 801
+ +W L + L S VL PD + + G GD ++R++ + S+
Sbjct: 247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 558 VTSVAW-NERGNLVAVGTHHGYVQVWDVS-------VAKQVHKLVGHTARVGALAWN--- 606
V +AW N++A G+ V VW++ + + V L GHT RVG +AW+
Sbjct: 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 607 GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYV 665
++L S D +IL DV T + H + + WS D + + D R+ V
Sbjct: 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 23/195 (11%)
Query: 607 GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWS-PD-NQYLASGGNDNRLY 664
G L++ S D+ I +V + L GH V + W+ P LAS D ++
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 665 VWNLHS--MSPLQTYTEHLAAVKAIAWSPHHHG---LLASGGGTADRCIRFWNTLTGQPM 719
+W + S + + H A+V ++ W+PH +G L+AS G + F T P+
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV-SVVEFKENGTTSPI 139
Query: 720 QCVDTGSQVCNLAWSKHSSELVSTH-----------GYSQNQILVWKYPTLTQV----AK 764
V + +W+ + E H G + N + +WKY + Q +
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 765 LTGHSYRVLYLAMSP 779
L GHS V +A SP
Sbjct: 200 LEGHSDWVRDVAWSP 214
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 30/234 (12%)
Query: 568 NLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW-NGDMLSSGSRDRMILQRDVRT 626
N V G ++V+D K + +L GH V AL + +G +L SGS DR + D++
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK- 191
Query: 627 PNSQSERRLVGHRQEVCGLKWSP--DNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAV 684
GH V L + +Y+ +G DN L+VW L S + + E
Sbjct: 192 -KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE----- 245
Query: 685 KAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTH 744
H + L+ T + F L G S H + +VS
Sbjct: 246 ------EHDYPLVFH---TPEENPYFVGVLRGHXASVRTV---------SGHGNIVVS-- 285
Query: 745 GYSQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNV 798
G N ++VW + L+GH+ R+ + + ++ + D T+R W++
Sbjct: 286 GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 31/188 (16%)
Query: 635 LVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHH 694
L GH V DN Y+ +G +D + V++ + L + H V A+ ++ H
Sbjct: 117 LRGHXTSVITCLQFEDN-YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HG 173
Query: 695 GLLASGGGTADRCIRFWNTLTG----------QPMQCVD-----------TGSQVCNL-A 732
G+L SG + DR +R W+ G ++C+D TGS+ L
Sbjct: 174 GILVSG--STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 733 WSKHSSELVSTHGYSQNQILVWKYPTLTQ--VAKLTGHSYRVLYLAMSPDGEAIVTGAGD 790
W V HG + LV+ P V L GH V +S G +V+G+ D
Sbjct: 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR--TVSGHGNIVVSGSYD 289
Query: 791 ETLRFWNV 798
TL W+V
Sbjct: 290 NTLIVWDV 297
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 567 GNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGDMLS--SGSRDRMILQRDV 624
GN+V G++ + VWDV+ K ++ L GHT R+ + ++ + S S D I D+
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Query: 625 RTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAV 684
N + L GH V L+ S +++L S D + W+ + S + ++ H +
Sbjct: 340 E--NGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--RKFSYHHTNL 393
Query: 685 KAIAWSPHHHGLLASG 700
AI +L SG
Sbjct: 394 SAITTFYVSDNILVSG 409
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 548 LCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW-- 605
L LS V ++ + G LV+ G+ V+VWD+ H GH + V L
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVS-GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213
Query: 606 --NGDMLSSGSRDRMI----LQRDVRTPNSQSERR-----------------LVGHRQEV 642
N + +GSRD + L ++ P+ E L GH V
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV 273
Query: 643 CGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGG 702
+ S + SG DN L VW++ L + H + + + +++
Sbjct: 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA--- 328
Query: 703 TADRCIRFWNTLTGQ 717
+ D IR W+ G+
Sbjct: 329 SXDTTIRIWDLENGE 343
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 23/195 (11%)
Query: 607 GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWS-PD-NQYLASGGNDNRLY 664
G +++ S D+ I +V + L GH V + W+ P LAS D ++
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 665 VWNLHS--MSPLQTYTEHLAAVKAIAWSPHHHG---LLASGGGTADRCIRFWNTLTGQPM 719
+W + S + + H A+V ++ W+PH +G L+AS G + F T P+
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV-SVVEFKENGTTSPI 139
Query: 720 QCVDTGSQVCNLAWSKHSSELVSTH-----------GYSQNQILVWKYPTLTQV----AK 764
V + +W+ + E H G + N + +WKY + Q +
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 765 LTGHSYRVLYLAMSP 779
L GHS V +A SP
Sbjct: 200 LEGHSDWVRDVAWSP 214
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 19/177 (10%)
Query: 595 GHTARVGALAW--NGDMLSSGSRDRMI-LQRDVRTPNSQSERRLV----GHRQEVCGLKW 647
H + ++AW + +L++GS D + + + + E L+ GH EV G+ W
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 648 SPDNQYLASGGNDNRLYVWNLHSMSP----LQTYTEHLAAVKAIAWSPHHHGLLASGGGT 703
S D YLA+ D +++W + EH VK + W P LLAS +
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLAS--SS 172
Query: 704 ADRCIRFWNTLTGQPMQCVDTGSQVCNLAWS----KHSSELVSTHGYSQNQILVWKY 756
D +R W +CV + WS K G + + VWKY
Sbjct: 173 YDDTVRIWKDYD-DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 548 LCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVW------DVSVAKQVHKLV-GHTARV 600
+ D +A ++ SVAW +L+A G+ V +W D + + ++ GH V
Sbjct: 51 VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110
Query: 601 GALAWNGD--MLSSGSRDR--MILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLAS 656
+AW+ D L++ SRD+ I + D + L H Q+V + W P LAS
Sbjct: 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLAS 170
Query: 657 GGNDNRLYVWN 667
D+ + +W
Sbjct: 171 SSYDDTVRIWK 181
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 647 WSPD--NQYLASGGNDNRLYV----WNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASG 700
WS D LA+G D ++ + ++ ++ + T H A++++AW P H LLA+
Sbjct: 18 WSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAA- 75
Query: 701 GGTADRCIRFW-------NTLTGQPMQCVDT-GSQVCNLAWSKHSSELVSTHGYSQNQIL 752
G+ D + W T + ++ ++V +AWS L + +
Sbjct: 76 -GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS--RDKSVW 132
Query: 753 VWKYPTLTQ----VAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVRSQRES 808
+W+ + ++ L HS V ++ P + + + D+T+R W + E
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD---DDWEC 189
Query: 809 KSVLN 813
+VLN
Sbjct: 190 VAVLN 194
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 23/195 (11%)
Query: 607 GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWS-PD-NQYLASGGNDNRLY 664
G ++ S D+ I +V + L GH V + W+ P LAS D ++
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 665 VWNLHS--MSPLQTYTEHLAAVKAIAWSPHHHG---LLASGGGTADRCIRFWNTLTGQPM 719
+W + S + + H A+V ++ W+PH +G L+AS G + F T P+
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKV-SVVEFKENGTTSPI 139
Query: 720 QCVDTGSQVCNLAWSKHSSELVSTH-----------GYSQNQILVWKYPTLTQV----AK 764
V + +W+ + E H G + N + +WKY + Q +
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 765 LTGHSYRVLYLAMSP 779
L GHS V +A SP
Sbjct: 200 LEGHSDWVRDVAWSP 214
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 569 LVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD---MLSSGSRDRMILQRDVR 625
LVAVGT VQ+ D+ H L GH + A++W+ +L++ S D + DVR
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 626 TPN-------------SQS-ERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWN 667
+ SQ+ E H +V GL ++ D +L + G DNR+ +WN
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/275 (19%), Positives = 97/275 (35%), Gaps = 88/275 (32%)
Query: 609 MLSSGSRDRMILQRDVRTPNSQSERRLVG------------HRQEVCGLKWSP-DNQYLA 655
ML S + L+ +R ++S RR++G H + L P + +Y+
Sbjct: 1 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML 60
Query: 656 SGGNDNRLYVWNLHSMSPLQTYT-------------EHLAAVKAIAWSPHHHGLLASGGG 702
SGG+D + +++L + S YT H +V+ + W PH G+ S
Sbjct: 61 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS-- 118
Query: 703 TADRCIRFWNTLT---------------------------------GQPMQCVDTGSQVC 729
+ D+ ++ W+T T G +Q D S C
Sbjct: 119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC 178
Query: 730 NLAWSKHSSELVSTH-----------GYSQNQILVWKYP-------TLTQ---------V 762
+ H E+++ + +++ +W TL Q
Sbjct: 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238
Query: 763 AKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 797
+ T H+ +V L + DG ++T D +R WN
Sbjct: 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 30/218 (13%)
Query: 525 NVLSVGLGSC-VYLW--SACTSQVTRLCDLS-----ADGNSVTSVAWNER-GNLVAVGTH 575
NVL+ G + +++W + CT + L+ + + V S+AWN+ ++ A
Sbjct: 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS 186
Query: 576 HGYVQVWDVSVAKQVHKLV------GHTARVGALAWNGD-----MLSSGS-RDRMILQRD 623
+ +WD+ K+V L G ++ + W+ ++GS D IL D
Sbjct: 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246
Query: 624 VRTPNSQSERRLVGHRQEVCGLKW-SPDNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLA 682
+R N+ + GH++ + L W D L S G DN + +WN S L +
Sbjct: 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN 306
Query: 683 AVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQ 720
++P L A C F N + Q +Q
Sbjct: 307 WCFKTKFAPEAPDLFA--------CASFDNKIEVQTLQ 336
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 19/137 (13%)
Query: 645 LKWSPDNQYLASGGNDNRLYVWNLH----SMSPLQTYTEHLAAVKAIAWSPHHHGLLASG 700
L WS +N+ +A ++ L +++ + +++ + ++ H ++VK + ++ +LASG
Sbjct: 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG 132
Query: 701 GGTADRCIRFWNTLT-----------GQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQN 749
G + I N T GQ M VD +V +LAW++ + + ++ G S N
Sbjct: 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD---EVISLAWNQSLAHVFASAG-SSN 188
Query: 750 QILVWKYPTLTQVAKLT 766
+W +V L+
Sbjct: 189 FASIWDLKAKKEVIHLS 205
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 656 SGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLT 715
SG D + VW+L L +Y H A V +A SPH + S + D I W+T
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLS--CSEDNRILLWDTRC 201
Query: 716 GQP---MQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTGHSYRV 772
+P + C G +LAW SE V G + + + + V HS V
Sbjct: 202 PKPASQIGCSAPGYLPTSLAWHPQQSE-VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCV 260
Query: 773 LYLAMSP 779
L SP
Sbjct: 261 TGLVFSP 267
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 5/159 (3%)
Query: 545 VTRLCDLSADGNSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALA 604
V++ C D + V++V+ G G+ ++VWD++ + H A+V +A
Sbjct: 118 VSKFCKYEHD-DIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVA 176
Query: 605 WN---GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDN 661
+ + S S D IL D R P S+ L W P + G++N
Sbjct: 177 ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236
Query: 662 -RLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLAS 699
+ + + S S + + H V + +SPH LAS
Sbjct: 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS 275
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 12/165 (7%)
Query: 527 LSVGLGSCVYLWSACTSQVTRLCDLSADGNSVTSVAWN-ERGNLVAVGTHHGYVQVWDVS 585
LS G + LW + D A TSV W+ E+ + A G G V + ++
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Query: 586 VAKQVHKLVGHTARVGALAWN---GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEV 642
H+ + LA++ L+S S D + D + R + HR V
Sbjct: 258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA---DFSEVFRDLSHRDFV 314
Query: 643 CGLKWSP-DNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKA 686
G+ WSP D+ + G D+++ LH P + TE+L A KA
Sbjct: 315 TGVAWSPLDHSKFTTVGWDHKV----LHHHLPSEGRTENLIATKA 355
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 650 DNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIR 709
D SGG D + VW+L + L++Y H + V +A P + S G D I
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRIL 207
Query: 710 FWNTLTGQPMQCVD---TGSQVCNLAWSKHSSELVSTHGYSQNQILV-WKYPTLTQVAKL 765
W+T +P +D + + ++ W + + + N LV K P Q + +
Sbjct: 208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV 267
Query: 766 TGHSYRVLYLAMS 778
HS + LA S
Sbjct: 268 --HSQNITGLAYS 278
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 22/195 (11%)
Query: 617 RMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQT 676
++ + ++R P + S Q C L WS D + +G + L +WN + + L
Sbjct: 87 KLTIIAELRHPFALSASSGKTTNQVTC-LAWSHDGNSIVTGVENGELRLWN-KTGALLNV 144
Query: 677 YTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQ---CVDTGSQVCNLAW 733
H A + ++ W+ +++ + WN ++G MQ +TG N
Sbjct: 145 LNFHRAPIVSVKWNKDGTHIISM---DVENVTILWNVISGTVMQHFELKETGGSSINA-- 199
Query: 734 SKHSS--------ELVSTHGY----SQNQILVWKYPTLTQVAKLTGHSYRVLYLAMSPDG 781
HS E V + + I V++ T KL GH + L +
Sbjct: 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259
Query: 782 EAIVTGAGDETLRFW 796
+ +++ + D TLR W
Sbjct: 260 KLLLSASDDGTLRIW 274
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 20/181 (11%)
Query: 556 NSVTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWNGD---MLSS 612
N VT +AW+ GN + G +G +++W+ + A ++ L H A + ++ WN D ++S
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGA-LLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 613 GSRDRMIL------------QRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGND 660
+ IL + +S + G ++W D++++ G
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK- 226
Query: 661 NRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQ 720
++V+ + +P H + + ++ + LL++ + D +R W+ G
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA---SDDGTLRIWHGGNGNSQN 283
Query: 721 C 721
C
Sbjct: 284 C 284
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 19/158 (12%)
Query: 526 VLSVGLGSCVYLWSACTSQVTRLCDL-------------SADGNSVTSVAWNERGNLVAV 572
++S+ + + LW+ + V + +L S DG+ V W + V
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223
Query: 573 GTHHGYVQVWDVSVAKQVHKLVGHTARVGALAWN--GDMLSSGSRDRMILQRDVRTPNSQ 630
G G + V+ ++ KL+GH + L +N +L S S D + R N
Sbjct: 224 GPK-GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL--RIWHGGNGN 280
Query: 631 SERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNL 668
S+ GH Q + W D++ + S D + +W+L
Sbjct: 281 SQNCFYGHSQSIVSASWVGDDKVI-SCSMDGSVRLWSL 317
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 618 MILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTY 677
+ Q +TP +L+GH + L+++ N+ L S +D L +W+ + + +
Sbjct: 230 FVYQITEKTPTG----KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF 285
Query: 678 TEHLAAVKAIAWSPHHHGLLASGGGTADRCIRFW 711
H ++ + +W + S D +R W
Sbjct: 286 YGHSQSIVSASWVGDDKVISCS----MDGSVRLW 315
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 607 GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVW 666
G+ L +GS + +V+ + H V + WS D + + D +W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 667 NLHSMSPLQTYTEHLAAVKAIAW--SPHHHGLLASGGGTADRCIRFWNTLTGQPM 719
+L S +Q +H A VK I W +P++ ++ G+ D+ ++FW+T + PM
Sbjct: 114 DLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMT---GSWDKTLKFWDTRSSNPM 164
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 558 VTSVAWNERGNLVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW----NGDMLSSG 613
V V W++ G+ V + ++WD+S + Q ++ H A V + W N + +G
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLS-SNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 614 SRDRMILQRDVRTPN 628
S D+ + D R+ N
Sbjct: 148 SWDKTLKFWDTRSSN 162
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 634 RLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS--PLQTYTEHLAAVKAIAWSP 691
L H +V G+ W+PD+ + + G D YVW L + P A + + W+P
Sbjct: 47 ELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 106
Query: 692 HHHGLLASGG 701
+ G
Sbjct: 107 NEKKFAVGSG 116
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 634 RLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMS--PLQTYTEHLAAVKAIAWSP 691
L H +V G+ W+PD+ + + G D YVW L + P A + + W+P
Sbjct: 47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 106
Query: 692 HHHGLLASGG 701
+ G
Sbjct: 107 NEKKFAVGSG 116
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 607 GDMLSSGSRDRMILQRDVRTPNSQSERRLVGHRQEVCGLKWSPD--NQYLASGGNDNRLY 664
G L++ S DR + DVR L GH V + W+ LAS D ++
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 665 VWNLHSMSPLQTYTE--HLAAVKAIAWSPHHHGLLASGGGT 703
+W + + +++ H ++V ++ W+PH +GL+ + G +
Sbjct: 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS 125
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 36/156 (23%)
Query: 654 LASGGNDNRLYVWNLHSMSPLQTYTEHLA------AVKAIAWSPHHHGLLASGGGTADRC 707
+A+G N+ + + L ++ PL + + +++++ +SP L + + C
Sbjct: 210 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 269
Query: 708 IRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTG 767
I + T + G ++ +L+ HSS+ +L + A
Sbjct: 270 ITLYET---------EFGERIGSLSVPTHSSQ-----------------ASLGEFA---- 299
Query: 768 HSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVR 803
HS V+ L+ + GE + + D LRFW+V +K R
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 335
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 36/156 (23%)
Query: 654 LASGGNDNRLYVWNLHSMSPLQTYTEHLA------AVKAIAWSPHHHGLLASGGGTADRC 707
+A+G N+ + + L ++ PL + + +++++ +SP L + + C
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 708 IRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPTLTQVAKLTG 767
I + T + G ++ +L+ HSS+ +L + A
Sbjct: 260 ITLYET---------EFGERIGSLSVPTHSSQ-----------------ASLGEFA---- 289
Query: 768 HSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKVR 803
HS V+ L+ + GE + + D LRFW+V +K R
Sbjct: 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 638 HRQEVCGLKWS-----PDNQYLASGGNDNRLYVWNLHSMSP---LQTYTEHLAAVK--AI 687
H Q + G++++ D A+ G+ NR+ ++ HS LQ+Y + A
Sbjct: 53 HNQPLFGVQFNWHSKEGDPLVFATVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTC 111
Query: 688 AW---SPHHHGLLASGGGTADRCIRFWNTLTGQPMQC----VDTGSQVCNLAWSKHSSEL 740
AW S H LLA G IR N +T MQC V G+ + L + L
Sbjct: 112 AWTYDSNTSHPLLAVAGSRG--IIRIINPIT---MQCIKHYVGHGNAINELKFHPRDPNL 166
Query: 741 VSTHGYSQNQIL-VWKYPTLTQVA---KLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFW 796
+ + S++ L +W T T VA + GH VL GE I++ D +L+ W
Sbjct: 167 LLS--VSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Query: 797 NVFSK 801
+ SK
Sbjct: 225 RINSK 229
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 550 DLSADGNSVTSVAWNERGN----LVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW 605
D AD N T AW N L+AV G +++ + + + VGH + L +
Sbjct: 101 DADADENFYT-CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 159
Query: 606 ---NGDMLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQYLASGGNDN 661
+ ++L S S+D + +++T + V GHR EV + + + S G D+
Sbjct: 160 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 219
Query: 662 RLYVWNLHSMSPLQTYTE 679
L +W ++S + E
Sbjct: 220 SLKLWRINSKRMMNAIKE 237
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 550 DLSADGNSVTSVAWNERGN----LVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW 605
D AD N T AW N L+AV G +++ + + + VGH + L +
Sbjct: 65 DADADENFYT-CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123
Query: 606 ---NGDMLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQYLASGGNDN 661
+ ++L S S+D + +++T + V GHR EV + + + S G D+
Sbjct: 124 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 183
Query: 662 RLYVWNLHSMSPLQTYTE 679
L +W ++S + E
Sbjct: 184 SLKLWRINSKRMMNAIKE 201
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 661 NRLYVWNLHSMSP---LQTYTEHLAAVK--AIAW---SPHHHGLLASGGGTADRCIRFWN 712
NR+ ++ HS LQ+Y + A AW S H LLA G IR N
Sbjct: 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG--IIRIIN 101
Query: 713 TLTGQPMQC----VDTGSQVCNLAWSKHSSELVSTHGYSQNQIL-VWKYPTLTQVA---K 764
+T MQC V G+ + L + L+ + S++ L +W T T VA
Sbjct: 102 PIT---MQCIKHYVGHGNAINELKFHPRDPNLLLS--VSKDHALRLWNIQTDTLVAIFGG 156
Query: 765 LTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
+ GH VL GE I++ D +L+ W + SK
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 193
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 550 DLSADGNSVTSVAWNERGN----LVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW 605
D AD N T AW N L+AV G +++ + + + VGH + L +
Sbjct: 64 DADADENFYT-CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 122
Query: 606 ---NGDMLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQYLASGGNDN 661
+ ++L S S+D + +++T + V GHR EV + + + S G D+
Sbjct: 123 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 182
Query: 662 RLYVWNLHSMSPLQTYTE 679
L +W ++S + E
Sbjct: 183 SLKLWRINSKRMMNAIKE 200
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 661 NRLYVWNLHSMSP---LQTYTEHLAAVK--AIAW---SPHHHGLLASGGGTADRCIRFWN 712
NR+ ++ HS LQ+Y + A AW S H LLA G IR N
Sbjct: 43 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG--IIRIIN 100
Query: 713 TLTGQPMQC----VDTGSQVCNLAWSKHSSELVSTHGYSQNQIL-VWKYPTLTQVA---K 764
+T MQC V G+ + L + L+ + S++ L +W T T VA
Sbjct: 101 PIT---MQCIKHYVGHGNAINELKFHPRDPNLLLS--VSKDHALRLWNIQTDTLVAIFGG 155
Query: 765 LTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
+ GH VL GE I++ D +L+ W + SK
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 192
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 550 DLSADGNSVTSVAWNERGN----LVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW 605
D AD N T AW N L+AV G +++ + + + VGH + L +
Sbjct: 64 DADADENFYT-CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 122
Query: 606 ---NGDMLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQYLASGGNDN 661
+ ++L S S+D + +++T + V GHR EV + + + S G D+
Sbjct: 123 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 182
Query: 662 RLYVWNLHSMSPLQTYTE 679
L +W ++S + E
Sbjct: 183 SLKLWRINSKRMMNAIKE 200
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 661 NRLYVWNLHSMSP---LQTYTEHLAAVK--AIAW---SPHHHGLLASGGGTADRCIRFWN 712
NR+ ++ HS LQ+Y + A AW S H LLA G IR N
Sbjct: 43 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG--IIRIIN 100
Query: 713 TLTGQPMQC----VDTGSQVCNLAWSKHSSELVSTHGYSQNQIL-VWKYPTLTQVA---K 764
+T MQC V G+ + L + L+ + S++ L +W T T VA
Sbjct: 101 PIT---MQCIKHYVGHGNAINELKFHPRDPNLLLS--VSKDHALRLWNIQTDTLVAIFGG 155
Query: 765 LTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
+ GH VL GE I++ D +L+ W + SK
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 192
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 661 NRLYVWNLHSMSP---LQTYTEHLAAVK--AIAW---SPHHHGLLASGGGTADRCIRFWN 712
NR+ ++ HS LQ+Y + A AW S H LLA G IR N
Sbjct: 39 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG--IIRIIN 96
Query: 713 TLTGQPMQC----VDTGSQVCNLAWSKHSSELVSTHGYSQNQIL-VWKYPTLTQVA---K 764
+T MQC V G+ + L + L+ + S++ L +W T T VA
Sbjct: 97 PIT---MQCIKHYVGHGNAINELKFHPRDPNLLLS--VSKDHALRLWNIQTDTLVAIFGG 151
Query: 765 LTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSK 801
+ GH VL GE I++ D +L+ W + SK
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 188
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 550 DLSADGNSVTSVAWNERGN----LVAVGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW 605
D AD N T AW N L+AV G +++ + + + VGH + L +
Sbjct: 60 DADADENFYT-CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 118
Query: 606 ---NGDMLSSGSRDRMILQRDVRTPNSQSERRLV-GHRQEVCGLKWSPDNQYLASGGNDN 661
+ ++L S S+D + +++T + V GHR EV + + + S G D+
Sbjct: 119 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 178
Query: 662 RLYVWNLHSMSPLQTYTE 679
L +W ++S + E
Sbjct: 179 SLKLWRINSKRMMNAIKE 196
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 650 DNQYLASGGNDNRLYVWNLHSMSPLQTYTEHLAAVKAIAWSPHHHGLLASGGGTADRCIR 709
D+ + S ND + + + H+ L+TY H + V I P +G + S G DR +R
Sbjct: 194 DDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLP--NGDIVSCG--EDRTVR 249
Query: 710 FWNTLTGQPMQCV 722
W+ G Q +
Sbjct: 250 IWSKENGSLKQVI 262
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 572 VGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW--NGDMLSSGSRDRMILQRDVRTPNS 629
+GT G ++V D + Q H + + L + +G+ L S S+D + V+ +
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK--DG 168
Query: 630 QSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTY 677
+ R L+GHR V + + + S D + +W + + + T+
Sbjct: 169 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 572 VGTHHGYVQVWDVSVAKQVHKLVGHTARVGALAW--NGDMLSSGSRDRMILQRDVRTPNS 629
+GT G ++V D + Q H + + L + +G+ L S S+D + V+ +
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK--DG 171
Query: 630 QSERRLVGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNLHSMSPLQTY 677
+ R L+GHR V + + + S D + +W + + + T+
Sbjct: 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,745,032
Number of Sequences: 62578
Number of extensions: 944192
Number of successful extensions: 3579
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2562
Number of HSP's gapped (non-prelim): 379
length of query: 819
length of database: 14,973,337
effective HSP length: 107
effective length of query: 712
effective length of database: 8,277,491
effective search space: 5893573592
effective search space used: 5893573592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)