BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10116
(298 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|312373972|gb|EFR21633.1| hypothetical protein AND_16688 [Anopheles darlingi]
Length = 296
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 161/290 (55%), Positives = 216/290 (74%), Gaps = 5/290 (1%)
Query: 10 IEIMLASDRID-PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEK 68
++I LA+DR+D PL+ + + TPGE V +G+M GHGT+ +D+ IK+SV GV+ +
Sbjct: 5 VKIGLAADRVDIPLLNTEDKNRRLFTPGEIVTSQQGFMRGHGTYMEDDSIKSSVAGVMVQ 64
Query: 69 VNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRR 128
VN+L++V+A+ RY+GEIG+VVV RVT +Q ++W VDTNS L+S L L+SVNLPGGE RR
Sbjct: 65 VNKLITVKALKGRYVGEIGDVVVARVTEVQEKRWKVDTNSRLDSVLLLSSVNLPGGELRR 124
Query: 129 RSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRS 188
R +DE+ MR++L+EGDLISAE+ + ++G L+LHTRSLKYGKL QGIL+ V PSLIRR
Sbjct: 125 RGAEDEKQMRKYLQEGDLISAEVQNVHSDGVLSLHTRSLKYGKLAQGILVKVFPSLIRRR 184
Query: 189 KSHFCNLACGAQVILGCNGYVWVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
K+HF NL CGA +ILG NG++W+S I + +SGGF QN+ +VV DRET+ RL N I
Sbjct: 185 KTHFHNLPCGASIILGNNGFIWISPILNSEGEESGGFTQNLGDVVTQEDRETVARLKNCI 244
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTL 294
LA K+ML+DTSI YAYEES+KY +LL+PES + T Q+LQ L
Sbjct: 245 LGLAHCKMMLYDTSILYAYEESMKYEVQELLQPESMAIVAFNTQQRLQLL 294
>gi|242013476|ref|XP_002427432.1| Exosome complex exonuclease RRP4, putative [Pediculus humanus
corporis]
gi|212511812|gb|EEB14694.1| Exosome complex exonuclease RRP4, putative [Pediculus humanus
corporis]
Length = 296
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 162/287 (56%), Positives = 218/287 (75%), Gaps = 4/287 (1%)
Query: 12 IMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEE--IKASVGGVVEKV 69
I L + RI+P+I+ + T I TPGET+ G+M GHGT+ DD+ +KASV G VE+V
Sbjct: 7 IRLGALRINPIIDNNNDTSNIYTPGETITCQTGFMRGHGTYVDDDNNALKASVAGSVEQV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+S+R + SRY GEIG+V+VGR+T +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISMRPLKSRYFGEIGDVIVGRITEVQQKRWKVDTNSRLDSILSLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
SV+DE+MMR++L+EGDLISAEI I ++G+L L+TRSLKYGKL QGILL V PSL+RRSK
Sbjct: 127 SVEDEQMMRKYLQEGDLISAEIQNILSDGTLQLYTRSLKYGKLSQGILLKVFPSLVRRSK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVS-AIDENKSGGFIQNMEV-VKLSDRETITRLNNVIKAL 247
+HF +L CGA +ILG NG++W++ A E+K GGF Q+++ V +DR ++RL N I AL
Sbjct: 187 THFHSLPCGANIILGNNGFIWITPAALEDKKGGFTQDLKYKVSKTDRIVLSRLRNCILAL 246
Query: 248 AESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTL 294
A SK+ L+DTS+ YAYEES KY+ +LL PE LD+ + T +LQ +
Sbjct: 247 ANSKMPLYDTSVMYAYEESQKYTVSELLAPEPMLDVAVLTTLRLQMI 293
>gi|170065837|ref|XP_001868042.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
gi|167862584|gb|EDS25967.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
Length = 294
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 212/285 (74%), Gaps = 4/285 (1%)
Query: 12 IMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQ 71
I LASDR++P + + + TPGE + +G+M GHGT+ +DE+IK+SV GV+ +VN+
Sbjct: 7 IKLASDRVNPSLLSGDSNPRLFTPGEVITSQQGFMRGHGTYMEDEDIKSSVAGVMVQVNK 66
Query: 72 LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSV 131
L++V+A+ RY+GEIG+VVV RVT +Q ++W VDTNS L+S L L+SVNLPGGE RRR V
Sbjct: 67 LITVKALKGRYVGEIGDVVVARVTDVQQKRWKVDTNSRLDSILLLSSVNLPGGELRRRGV 126
Query: 132 QDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSH 191
+DE+ MR++L+EGDLISAE+ + ++G L+LHTRSLKYGKLGQGIL+ V PSLI+R K+H
Sbjct: 127 EDEQQMRKYLQEGDLISAEVQNVHSDGVLSLHTRSLKYGKLGQGILVKVFPSLIKRRKTH 186
Query: 192 FCNLACGAQVILGCNGYVWVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVIKAL 247
F NL CGA +ILG NG++W+S + + GGF QN+ E V DRE I+RL N I AL
Sbjct: 187 FHNLPCGASIILGNNGFIWISPVVNTEGEDGGGFTQNLDEAVSKQDREVISRLRNSILAL 246
Query: 248 AESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
A K++L+DTSI YAYEESLKY ++LL E+ D+ T KL+
Sbjct: 247 AHCKMLLYDTSILYAYEESLKYDVHELLHQEAMFDIAFLTQHKLR 291
>gi|91078208|ref|XP_968880.1| PREDICTED: similar to AGAP011211-PA [Tribolium castaneum]
gi|270002359|gb|EEZ98806.1| hypothetical protein TcasGA2_TC001377 [Tribolium castaneum]
Length = 296
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/289 (54%), Positives = 212/289 (73%), Gaps = 4/289 (1%)
Query: 10 IEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I I LA+ RI+P I ++ I TPG+ + +M GHGT+ ++ +K+SV GV E+V
Sbjct: 5 IHIRLAAHRINPSIAVNRRVPKIFTPGQVITEQNEFMRGHGTYEEEGFLKSSVAGVKEQV 64
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N L+S+R + SRY GE+G+VVVGRVT +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 65 NNLISIRPLKSRYNGEVGDVVVGRVTEVQQKRWKVDTNSRLDSVLLLSSVNLPGGELRRR 124
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE MMR++L+EGDLISAE+ + ++GSL+LHTRSLKYGKL QGIL+ V PSLI+RSK
Sbjct: 125 SAEDEHMMRQYLQEGDLISAEVQSVYSDGSLSLHTRSLKYGKLSQGILVKVFPSLIKRSK 184
Query: 190 SHFCNLACGAQVILGCNGYVWVSAI---DENKSGGFIQNME-VVKLSDRETITRLNNVIK 245
+HF N GA +ILG NG++W+ E+ +GGF+QN+E VV +RETI RL N I
Sbjct: 185 THFHNFYVGASIILGNNGFIWIYPTVSNAEDNAGGFVQNLEQVVSRPERETIGRLRNCIL 244
Query: 246 ALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTL 294
AL +SK+ML+DTSI YA+EES KYS +LL PE+ +D+ + T +L L
Sbjct: 245 ALIQSKMMLYDTSILYAFEESQKYSVAELLIPEAMVDVAILTQDRLSML 293
>gi|170065835|ref|XP_001868041.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
gi|167862583|gb|EDS25966.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
Length = 296
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 209/285 (73%), Gaps = 4/285 (1%)
Query: 12 IMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQ 71
I SDR++P + + + TPGE + +G+M GHGT+ +DE+IK+SV GV+ +VN+
Sbjct: 9 ITRKSDRVNPSLLSGDSNPRLFTPGEVITSQQGFMRGHGTYMEDEDIKSSVAGVMVQVNK 68
Query: 72 LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSV 131
L++V+A+ RY+GEIG+VVV RVT +Q ++W VDTNS L+S L L+SVNLPGGE RRR V
Sbjct: 69 LITVKALKGRYVGEIGDVVVARVTDVQQKRWKVDTNSRLDSILLLSSVNLPGGELRRRGV 128
Query: 132 QDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSH 191
+DE+ MR++L+EGDLISAE+ + ++G L+LHTRSLKYGKLGQGIL+ V PSLI+R K+H
Sbjct: 129 EDEQQMRKYLQEGDLISAEVQNVHSDGVLSLHTRSLKYGKLGQGILVKVFPSLIKRRKTH 188
Query: 192 FCNLACGAQVILGCNGYVWVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVIKAL 247
F NL CGA +ILG NG++W+S + + GGF QN+ E V DRE I+RL N I AL
Sbjct: 189 FHNLPCGASIILGNNGFIWISPVVNTEGEDGGGFTQNLDEAVSKQDREVISRLRNCILAL 248
Query: 248 AESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
A K++L+DTSI YAYEESLKY ++LL + D+ T KL+
Sbjct: 249 AHCKMLLYDTSILYAYEESLKYDVHELLHQGAMFDIAFLTQHKLR 293
>gi|170045026|ref|XP_001850125.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
gi|167868077|gb|EDS31460.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
Length = 296
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 209/285 (73%), Gaps = 4/285 (1%)
Query: 12 IMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQ 71
I SDR++P + + + TPGE + +G+M GHGT+ +DE+IK+SV GV+ +VN+
Sbjct: 9 ITRKSDRVNPSLLSGDSNPRLFTPGEVITSQQGFMRGHGTYMEDEDIKSSVAGVMVQVNK 68
Query: 72 LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSV 131
L++V+A+ RY+GEIG+VVV RVT +Q ++W VDTNS L+S L L+SVNLPGGE RRR V
Sbjct: 69 LITVKALKGRYVGEIGDVVVARVTDVQQKRWKVDTNSRLDSILLLSSVNLPGGELRRRGV 128
Query: 132 QDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSH 191
+DE+ MR++L+EGDLISAE+ + ++G L+LHTRSLKYGKLGQGIL+ V PSLI+R K+H
Sbjct: 129 EDEQQMRKYLQEGDLISAEVQNVHSDGVLSLHTRSLKYGKLGQGILVKVFPSLIKRRKTH 188
Query: 192 FCNLACGAQVILGCNGYVWVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVIKAL 247
F NL CGA +ILG NG++W+S + + GGF QN+ E V DRE I+RL N I AL
Sbjct: 189 FHNLPCGASIILGNNGFIWISPVVNAEGEDGGGFTQNLDEAVSKQDREVISRLRNCILAL 248
Query: 248 AESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
A K++L+DTSI YAYEESLKY ++LL + D+ T KL+
Sbjct: 249 AHCKMLLYDTSILYAYEESLKYDVHELLHQGAMFDIAFLTQHKLR 293
>gi|158287391|ref|XP_309432.3| AGAP011211-PA [Anopheles gambiae str. PEST]
gi|157019628|gb|EAA05284.3| AGAP011211-PA [Anopheles gambiae str. PEST]
Length = 296
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/290 (54%), Positives = 212/290 (73%), Gaps = 5/290 (1%)
Query: 10 IEIMLASDRID-PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEK 68
+ I LA DR++ PLI + + TPGE V +G+M GHGT+ +D+ IK+SV GV+ +
Sbjct: 5 VSIRLACDRVNIPLISDESKSQRLFTPGEVVTSQQGFMRGHGTYMEDDTIKSSVAGVMVQ 64
Query: 69 VNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRR 128
VN+L++V+A+ RY+GEIG+VVV RVT +Q ++W VDTNS L+S L L+SVNLPGGE RR
Sbjct: 65 VNKLITVKALKGRYVGEIGDVVVARVTEVQEKRWKVDTNSRLDSMLLLSSVNLPGGELRR 124
Query: 129 RSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRS 188
R V+DE+ MR++L+EGDLISAE+ + ++G+L+LHTRSLKYGKL QGIL+ V PSLI+R
Sbjct: 125 RGVEDEKQMRKYLQEGDLISAEVQNVHSDGTLSLHTRSLKYGKLAQGILVKVFPSLIQRR 184
Query: 189 KSHFCNLACGAQVILGCNGYVWVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
K+HF NL CGA +ILG NG++W+S + + + GGF QN+ +VV DR+TI RL N I
Sbjct: 185 KTHFHNLPCGASIILGNNGFIWISPMMNSEGGEGGGFTQNLDDVVTKEDRQTIARLRNCI 244
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTL 294
ALA K+ML+DTSI YAYEES KY +LL E D+ T +L+ L
Sbjct: 245 LALAHCKMMLYDTSILYAYEESQKYEVSELLHQECMTDIAFLTQHRLRVL 294
>gi|195026059|ref|XP_001986172.1| GH20673 [Drosophila grimshawi]
gi|193902172|gb|EDW01039.1| GH20673 [Drosophila grimshawi]
Length = 300
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/292 (56%), Positives = 208/292 (71%), Gaps = 7/292 (2%)
Query: 14 LASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQ 71
LA DR+D L E E I TPGE + G+M GHGTF +DE+IKASV GV++KVN+
Sbjct: 9 LAIDRVDWNALAENQEQLPRIYTPGEVLMPEAGFMRGHGTFVEDEDIKASVAGVIQKVNK 68
Query: 72 LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSV 131
L+SVR + SRY+GEIG+VVV RV + ++W VDTNS L+S L L+SVNLPGGE RRRS
Sbjct: 69 LISVRPLKSRYVGEIGDVVVARVLEVGQKRWRVDTNSRLDSVLLLSSVNLPGGELRRRSA 128
Query: 132 QDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSH 191
+DE+MMR +L EGDLISAE+ + E +L+L+TRSLKYGKL QGIL+ V P+L++R K H
Sbjct: 129 EDEQMMRRYLDEGDLISAEVQNVFEESTLSLYTRSLKYGKLSQGILVKVFPALVKRRKMH 188
Query: 192 FCNLACGAQVILGCNGYVWVSAI----DENKSGGFIQNM-EVVKLSDRETITRLNNVIKA 246
F NLACGA VILG NGY+W+S E GGF QN+ EVV ++RE I RL N I A
Sbjct: 189 FHNLACGASVILGNNGYIWISPTKSDEQEGGEGGFAQNLSEVVPRNEREIIARLRNCILA 248
Query: 247 LAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLGLAD 298
LA+ K+MLFDTSIQYAYEESLKY +LL+ D+ T +L+ + L D
Sbjct: 249 LAKCKLMLFDTSIQYAYEESLKYEPRELLQQHVIFDIGEQTQARLRDVDLLD 300
>gi|195455765|ref|XP_002074857.1| GK22923 [Drosophila willistoni]
gi|194170942|gb|EDW85843.1| GK22923 [Drosophila willistoni]
Length = 300
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/291 (56%), Positives = 207/291 (71%), Gaps = 7/291 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L E + I TPGE + GYM GHGTF ++E IKASV GV+EKV
Sbjct: 7 IGLALDRVDWNDLAEHQDRLPRIYTPGEILMPEAGYMRGHGTFVEEENIKASVAGVIEKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVIDVQQKRWRVDTNSRLDSVLLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EG+L+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGTLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAI----DENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA +ILG NGY+W++ E GGF QN+ EVV +RE I RL N I
Sbjct: 187 MHFHNLPCGASIILGNNGYIWIAPTKAENQEGGEGGFAQNLSEVVPRPEREVIARLRNCI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLG 295
ALA+ K+ML+DTSIQYA++ESLKY Y+LL+ D+ T +L+ G
Sbjct: 247 LALAKCKLMLYDTSIQYAFDESLKYEAYELLQQNVIHDIGEQTQARLRDAG 297
>gi|125809363|ref|XP_001361091.1| GA17783 [Drosophila pseudoobscura pseudoobscura]
gi|195154659|ref|XP_002018239.1| GL17601 [Drosophila persimilis]
gi|54636264|gb|EAL25667.1| GA17783 [Drosophila pseudoobscura pseudoobscura]
gi|194114035|gb|EDW36078.1| GL17601 [Drosophila persimilis]
Length = 298
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/288 (56%), Positives = 206/288 (71%), Gaps = 7/288 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L E + + TPGE V G+M GHGTF +DE IKASV GV+EKV
Sbjct: 7 IELALDRVDWCALAERQDVLPRVYTPGEVVMPEAGFMRGHGTFVEDENIKASVAGVIEKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVIEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EG+L+L+TRSLKYGKL QG+L+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGTLSLYTRSLKYGKLSQGVLVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAI----DENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S E GGF QN+ E V ++RE I RL N I
Sbjct: 187 MHFHNLPCGASVILGNNGYIWISPPKSQDQEGGEGGFAQNLGEAVPRNEREVIARLRNCI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA+ K+ML+DTSIQYAY+ESLKY ++LL+ D+ T +L+
Sbjct: 247 LALAKCKLMLYDTSIQYAYDESLKYEAHELLQQNVIYDIGEQTQARLR 294
>gi|157133832|ref|XP_001656299.1| rrp4 [Aedes aegypti]
gi|108870702|gb|EAT34927.1| AAEL012874-PA [Aedes aegypti]
Length = 294
Score = 313 bits (802), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 152/287 (52%), Positives = 210/287 (73%), Gaps = 4/287 (1%)
Query: 10 IEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
+ I LASDR + + + + TPGE + +G+M GHGT+ + E+IK+SV GV+ +V
Sbjct: 5 VMIRLASDRANLSLLSGDSNPRLFTPGEVITSQQGFMRGHGTYMEGEDIKSSVAGVMVQV 64
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L++V+ + RY+GEIG+V+V RVT +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 65 NKLITVKPLKGRYVGEIGDVIVARVTDVQQKRWKVDTNSRLDSILLLSSVNLPGGELRRR 124
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
V+DE+ MR++L+EGDLISAE+ + ++G L+LHTRSLKYGKLGQGIL+ V PSLI+R K
Sbjct: 125 GVEDEQQMRKYLQEGDLISAEVQNVHSDGVLSLHTRSLKYGKLGQGILVKVFPSLIKRRK 184
Query: 190 SHFCNLACGAQVILGCNGYVWVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVIK 245
+HF NL CGA +ILG NG++W+S I + + GGF QN+ E + DRE I+RL N +
Sbjct: 185 THFHNLPCGASIILGNNGFIWISPIVNTEGEEGGGFTQNLEESISKQDREVISRLRNCVL 244
Query: 246 ALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA K++L+DTSI YAYEESLKY ++LL E+ D+ T KL+
Sbjct: 245 ALANCKMLLYDTSILYAYEESLKYEVHELLHQEAMFDIAFLTQHKLR 291
>gi|332372568|gb|AEE61426.1| unknown [Dendroctonus ponderosae]
Length = 303
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/286 (55%), Positives = 209/286 (73%), Gaps = 7/286 (2%)
Query: 15 ASDRIDPLIEIHEFTDPILTPGETV--EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQL 72
AS+R+ PL ++ I TPGE V ++ GHGT+ + ++KASV GV E+VN+L
Sbjct: 12 ASNRVRPLAATQKY-HRIFTPGEEVIKAAQTHFVRGHGTYEEGGDLKASVAGVKEQVNKL 70
Query: 73 VSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQ 132
VSVR + SRY G++GEV+VGR+ +Q ++W VDTNS L+SAL L+SVNLPGGE RRRS +
Sbjct: 71 VSVRPLKSRYNGQVGEVLVGRILEVQQKRWKVDTNSRLDSALLLSSVNLPGGELRRRSAE 130
Query: 133 DEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHF 192
D+ MMRE+L+EGDLISAE+ + T+G+L+LHTRSLKYGKLGQGIL+ V PSL+++ K HF
Sbjct: 131 DQHMMREYLQEGDLISAEVQSVFTDGTLSLHTRSLKYGKLGQGILIKVFPSLVKKCKLHF 190
Query: 193 CNLACGAQVILGCNGYVWVSAIDEN---KSGGFIQNMEVVKLSD-RETITRLNNVIKALA 248
C L G +ILG NGY+W+S N GGFIQN+E V D RE + R+ N I ALA
Sbjct: 191 CTLPFGVSLILGNNGYIWISPTSNNVEGDEGGFIQNLEEVIPKDIREAMARVRNSILALA 250
Query: 249 ESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTL 294
++ +MLFDTSI +AYEESLKYS ++LL PE+ +DL + T QKL +
Sbjct: 251 QNYMMLFDTSIIFAYEESLKYSVHELLLPETMVDLAVLTQQKLSMM 296
>gi|194755110|ref|XP_001959835.1| GF11836 [Drosophila ananassae]
gi|190621133|gb|EDV36657.1| GF11836 [Drosophila ananassae]
Length = 298
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 160/288 (55%), Positives = 206/288 (71%), Gaps = 7/288 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L E + TPGE + G+M GHGTF +DE IKASV GV+EKV
Sbjct: 7 IELALDRVDWRDLAAHPENLPRVYTPGEVLMPEAGFMRGHGTFVEDETIKASVAGVIEKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVIEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EG+L+L+TRSLKYGKL QG+L+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGTLSLYTRSLKYGKLSQGLLVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAIDENKS----GGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W++ + GGF QN+ E V +DRE I RL N +
Sbjct: 187 MHFHNLPCGASVILGNNGYIWIAPTKAQEQDGGEGGFAQNLNEHVPRNDREVIARLRNCV 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA+ K+M++DTSIQYAYEESLKY ++LL+ + D+ T +L+
Sbjct: 247 LALAKCKLMIYDTSIQYAYEESLKYEAHELLQQNAIYDIGEQTQSRLR 294
>gi|71895889|ref|NP_001025658.1| exosome component 2 [Xenopus (Silurana) tropicalis]
gi|60688075|gb|AAH91582.1| exosome component 2 [Xenopus (Silurana) tropicalis]
Length = 293
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 202/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPG+T+ G+M GHGT+ +D+++ ASV GVVE+VN+L+ VRA+ +RY GE+G++VV
Sbjct: 26 LVTPGDTITTDTGFMRGHGTYTEDDKLVASVAGVVERVNKLICVRALKARYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W VDTNS L+S L L++VNLPGGE RRRS +DE MR++L+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVDTNSRLDSVLILSAVNLPGGELRRRSAKDELAMRDYLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQG+L+ V PSLI+R K+HF NL CGA +IL NG++W+
Sbjct: 146 QAVYSDGALSLHTRSLKYGKLGQGVLVRVSPSLIKRRKTHFHNLPCGASIILANNGFIWL 205
Query: 212 SAID---ENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
A E ++GGFI N+E V LSDRE I+RL N I ALA K++L+DTS+ Y YE SL
Sbjct: 206 CATPKEMEEEAGGFITNLEPVALSDREVISRLRNCILALASQKMLLYDTSVLYCYEASLA 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ +LLK E D+V+ T Q+L
Sbjct: 266 HQIKELLKVEVIEDIVMETRQRL 288
>gi|339717151|ref|NP_001017572.2| exosome complex exonuclease RRP4 [Danio rerio]
Length = 295
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 201/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + G+M GHGT+ D++ + ASV G VE+VN+L+ V+ + +RY GE+G+VVV
Sbjct: 28 LVVPGDVITSDTGFMRGHGTYMDEDRLTASVAGQVERVNKLICVKPLKTRYNGEVGDVVV 87
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L++VNLPGGE RRRS QDE MR++L+EGDLISAE+
Sbjct: 88 GRITEVQQKRWKVETNSRLDSVLLLSAVNLPGGELRRRSTQDELAMRDYLQEGDLISAEV 147
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I ++G+L+LHTRSLKYGKLGQG+L+ V PSL++R K+HF NL CGA +ILG NGYVW+
Sbjct: 148 QSIFSDGALSLHTRSLKYGKLGQGVLVYVSPSLVKRQKTHFHNLPCGASLILGNNGYVWL 207
Query: 212 S---AIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
S A+ E ++GGF +ME V LSDRE ++RL N + ALA KV+LFDTS+ Y YE SL+
Sbjct: 208 SPTPALQEEQAGGFYTSMEPVSLSDREVVSRLRNCLLALANQKVLLFDTSVLYCYEASLQ 267
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++VL T Q+L
Sbjct: 268 HQIKDILKPEIMEEIVLETRQRL 290
>gi|443697103|gb|ELT97658.1| hypothetical protein CAPTEDRAFT_115301 [Capitella teleta]
Length = 290
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 209/286 (73%), Gaps = 3/286 (1%)
Query: 10 IEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
++I LAS RI + ++TPG+ + G+M GHGT+ +D+++ ASV GVVE+V
Sbjct: 3 VDIRLASARITRENTNAQEPQHLMTPGDVITADTGFMRGHGTYMEDDKLHASVAGVVERV 62
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+ VR + +RY GEIG+VVVGR+ + ++W VDTN+ L+S L L+SVNLPGGE RRR
Sbjct: 63 NKLICVRPIKTRYHGEIGDVVVGRILEVGQRRWKVDTNAKLDSILMLSSVNLPGGELRRR 122
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR++L EGDLISAE+ + +G+L+LHTRSLKYGKL QGILL V PSLI+R K
Sbjct: 123 SEEDEKMMRDYLNEGDLISAEVQNVFADGALSLHTRSLKYGKLSQGILLAVSPSLIKRRK 182
Query: 190 SHFCNLACGAQVILGCNGYVWVS-AIDE--NKSGGFIQNMEVVKLSDRETITRLNNVIKA 246
+HF NL CGA +ILG NGYVW+ +IDE ++GGF+Q++E ++ ++RE I RL N +
Sbjct: 183 THFHNLPCGASIILGNNGYVWICPSIDEATEQTGGFVQDLEPIRTAEREVIARLRNCVAL 242
Query: 247 LAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
LAE +++LFDTSI YA+E S K+ DLLKPE ++ T +L+
Sbjct: 243 LAEHRMVLFDTSILYAFENSSKHQVKDLLKPEVMKEIADMTRHRLE 288
>gi|148234237|ref|NP_001085606.1| exosome component 2 [Xenopus laevis]
gi|49256126|gb|AAH73011.1| MGC82596 protein [Xenopus laevis]
Length = 293
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 148/266 (55%), Positives = 202/266 (75%), Gaps = 3/266 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPG+T+ G+M GHGT+ +D+++ ASV GVVE+VN+L+ VRA+ +RY GE+G++VV
Sbjct: 26 LVTPGDTISTDSGFMRGHGTYTEDDKLVASVAGVVERVNKLICVRALKARYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W VDTNS L+S L L++VNLPGGE RRRS +DE MR +L+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVDTNSRLDSVLLLSAVNLPGGELRRRSAEDELAMRSYLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQG+L+ V PSLI+R K+HF NL CGA VILG NG++W+
Sbjct: 146 QAVYSDGALSLHTRSLKYGKLGQGLLVQVSPSLIKRRKTHFHNLTCGASVILGNNGFIWL 205
Query: 212 S---AIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E ++GGFI N+E + L+DRE I+RL N I ALA K++L+DTSI Y YE SL
Sbjct: 206 CPTPEETEEEAGGFITNLEPIALADREVISRLRNCILALASQKMLLYDTSILYCYEASLS 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKLQTL 294
+ +LLK E D+VL T Q+L L
Sbjct: 266 HQIKELLKVEVMEDIVLETRQRLLEL 291
>gi|195489207|ref|XP_002092639.1| GE11554 [Drosophila yakuba]
gi|194178740|gb|EDW92351.1| GE11554 [Drosophila yakuba]
Length = 298
Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 161/288 (55%), Positives = 207/288 (71%), Gaps = 7/288 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L + + TPGE + G+M GHGTF +DE IKASV GV++KV
Sbjct: 7 IELALDRVDWRDLAAQTDHQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKASVAGVIQKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV+ +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EG+L+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGTLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAID----ENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S E GGF QN+ E V +DRE I RL N I
Sbjct: 187 MHFHNLPCGASVILGNNGYIWISPTKGQEQEGGEGGFAQNLNEHVPRADREVIARLRNSI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA+ K+M++DTSIQYAYEESL+Y ++LL+ + D+ T +L+
Sbjct: 247 LALAKCKLMIYDTSIQYAYEESLRYEAHELLQQNAIYDIGQQTQARLR 294
>gi|24762324|ref|NP_611807.1| Rrp4 [Drosophila melanogaster]
gi|7291605|gb|AAF47028.1| Rrp4 [Drosophila melanogaster]
Length = 298
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 162/288 (56%), Positives = 207/288 (71%), Gaps = 7/288 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L E + TPGE + G+M GHGTF +DE IK+SV GV++KV
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV+ +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EGSL+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAID----ENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S E GGF QN+ E V +DRE I RL N I
Sbjct: 187 MHFHNLPCGASVILGNNGYIWISPTKGQEEEGGEGGFAQNLNEHVPRADREVIARLRNSI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA+ K+M++DTSIQYAYEESL+Y ++LL+ + D+ T +L+
Sbjct: 247 LALAKCKLMIYDTSIQYAYEESLRYEAHELLQQNAIYDIGQQTQARLR 294
>gi|195384177|ref|XP_002050794.1| GJ20003 [Drosophila virilis]
gi|194145591|gb|EDW61987.1| GJ20003 [Drosophila virilis]
Length = 300
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/294 (55%), Positives = 206/294 (70%), Gaps = 7/294 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L E + I TPGE + G+M GHGTF +DE IKASV GV+EKV
Sbjct: 7 IDLALDRVDWNALAENQDKLPRIYTPGEVLMPEAGFMRGHGTFVEDENIKASVAGVIEKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV + ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVLEVGQKRWRVDTNSRLDSVLLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ + E +L+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNVFEESTLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAIDE----NKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S GGF QN+ E+V ++RE I RL N I
Sbjct: 187 MHFHNLPCGASVILGNNGYIWISPTKSEEQEGGEGGFAQNLNEIVPRNEREVIARLRNCI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLGLAD 298
ALA+ K+ML+DTSIQYAYEESLKY +LL+ D+ T +L+ + L D
Sbjct: 247 LALAKCKLMLYDTSIQYAYEESLKYEPRELLQQHVIFDIGEQTQARLRDVDLMD 300
>gi|194885394|ref|XP_001976429.1| GG20018 [Drosophila erecta]
gi|190659616|gb|EDV56829.1| GG20018 [Drosophila erecta]
Length = 298
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/288 (55%), Positives = 206/288 (71%), Gaps = 7/288 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L + + TPGE + G+M GHGTF +DE IKASV GV++KV
Sbjct: 7 IELALDRVDWRDLAAQTDHQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKASVAGVIQKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV+ +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EG+L+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGTLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAID----ENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S E GGF QN+ E V DRE I RL N I
Sbjct: 187 MHFHNLPCGASVILGNNGYIWISPTKGQEQEGGEGGFAQNLNEHVPRGDREVIARLRNSI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA+ K+M++DTSIQYAYEESL+Y ++LL+ + D+ T +L+
Sbjct: 247 LALAKCKLMIYDTSIQYAYEESLRYEAHELLQQNAIYDVGQQTQARLR 294
>gi|21428348|gb|AAM49834.1| GM02257p [Drosophila melanogaster]
Length = 298
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/288 (56%), Positives = 207/288 (71%), Gaps = 7/288 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L E + TPGE + G+M GHGTF +DE IK+SV GV++KV
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV+ +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EGSL+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAID----ENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S E GGF QN+ E V +DRE I RL N I
Sbjct: 187 MHFHNLPCGASVILGNNGYIWISPTKGQEEEGGEGGFAQNLNEHVPRADREVIARLRNSI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA+ K+M++DTSIQYAYEESL+Y ++LL+ + D+ T +L+
Sbjct: 247 LALAKCKLMIYDTSIQYAYEESLRYEAHELLQQNAIYDIGQQTQGRLR 294
>gi|289742421|gb|ADD19958.1| exosomal 3'-5' exoribonuclease complex subunit Rrp4 [Glossina
morsitans morsitans]
Length = 298
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 153/290 (52%), Positives = 209/290 (72%), Gaps = 7/290 (2%)
Query: 10 IEIMLASDRID-PLIEIHEFTDPIL-TPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVE 67
I+I LA DR+D L+ ++ P L TPGE V G+M GHGT+ + E+IKASV GV+E
Sbjct: 5 IKIRLARDRVDMGLLAQNQTNVPRLYTPGEVVIAEGGFMKGHGTYAEGEDIKASVAGVIE 64
Query: 68 KVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQR 127
KVN+L+S++ + SRY+GEIG+VVV R+ +Q ++W VDTNS L+S L L+SVNLPGGE R
Sbjct: 65 KVNKLISIKPLKSRYVGEIGDVVVARIIDVQQKRWKVDTNSRLDSILLLSSVNLPGGELR 124
Query: 128 RRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR 187
RR +DE+ MR++L+EGDLISAE+ I EG+L+L+TRSL+YGKL QG+L+ V PSL++R
Sbjct: 125 RRVSEDEQTMRKYLQEGDLISAEVQNIYEEGTLSLYTRSLRYGKLSQGVLVKVFPSLVKR 184
Query: 188 SKSHFCNLACGAQVILGCNGYVWVSAI----DENKSGGFIQNM-EVVKLSDRETITRLNN 242
K+HF NL CGA +ILG NG++W++ ++ GGF QN+ EV+ +DRE I RL N
Sbjct: 185 RKTHFHNLPCGANIILGNNGFIWIAPATNTDEDGGDGGFSQNLTEVIPKADREIIARLRN 244
Query: 243 VIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA K+ML+DTSI YAYE S+KY LL+ E+ D+ T +L+
Sbjct: 245 CTLALAHCKMMLYDTSILYAYELSMKYEVKQLLEQEAIFDVAFLTKHRLR 294
>gi|153792053|ref|NP_001012816.2| exosome component 2 [Gallus gallus]
Length = 294
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 146/266 (54%), Positives = 198/266 (74%), Gaps = 3/266 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ GYM GHGT+ D+E++ ASV G VE+VN+LV V + +RY GE+G++VV
Sbjct: 27 LVVPGDTITTDTGYMRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNGEVGDIVV 86
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR++L+EGDLISAE+
Sbjct: 87 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEV 146
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 147 QSVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 206
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E K +GGF N+E V LSDRE I+RL N + AL K+MLFDTSI Y YE SL
Sbjct: 207 YPTPEQKDEEAGGFTTNLEPVPLSDREVISRLRNCVVALVTQKLMLFDTSILYCYEASLP 266
Query: 269 YSTYDLLKPESKLDLVLCTAQKLQTL 294
+ D+LKPE ++VL T QKL L
Sbjct: 267 HQIKDILKPEVMEEIVLETRQKLLDL 292
>gi|326930368|ref|XP_003211319.1| PREDICTED: exosome complex exonuclease RRP4-like [Meleagris
gallopavo]
Length = 294
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 147/266 (55%), Positives = 198/266 (74%), Gaps = 3/266 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ GYM GHGT+ D+E++ ASV G VE+VN+LV V + +RY GE+G++VV
Sbjct: 27 LVVPGDTITTDTGYMRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNGEVGDIVV 86
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR++L+EGDLISAE+
Sbjct: 87 GRITEVQQKRWKVETNSRLDSILLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEV 146
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 147 QSVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 206
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E K +GGF N+E V LSDRE I+RL N I AL K+MLFDTSI Y YE SL
Sbjct: 207 YPTPEQKDEEAGGFTTNLEPVPLSDREVISRLRNCIVALVTQKLMLFDTSILYCYEASLP 266
Query: 269 YSTYDLLKPESKLDLVLCTAQKLQTL 294
+ D+LKPE ++VL T QKL L
Sbjct: 267 HQIKDILKPEVMEEIVLETRQKLLDL 292
>gi|432885912|ref|XP_004074818.1| PREDICTED: exosome complex component RRP4-like [Oryzias latipes]
Length = 293
Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 144/263 (54%), Positives = 200/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + G+M GHGT+ D+E++ ASV G V++V++L+ VR + +R+ GE+G+VVV
Sbjct: 26 LVVPGDIITSDTGFMRGHGTYVDEEKLTASVAGEVQRVDKLICVRPLKTRFNGEVGDVVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+SVNLPGGE RRRS +DE MRE+L+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMREYLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQG+L+ + PSLI+R KSHF NL CGA VILG NG+VW+
Sbjct: 146 QSVFSDGALSLHTRSLKYGKLGQGVLVQISPSLIKRQKSHFHNLPCGASVILGNNGFVWL 205
Query: 212 SAI---DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E ++GGF ++E V LSDRE I+RL N + ALA KV+L+DTS+ Y YE SL+
Sbjct: 206 YPTLGQQEEEAGGFYTSLEPVSLSDREVISRLRNCLLALAAHKVLLYDTSVLYCYESSLQ 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+S D+LKPE ++V+ T QKL
Sbjct: 266 HSVKDILKPEVMEEIVMLTQQKL 288
>gi|395506258|ref|XP_003757452.1| PREDICTED: exosome complex component RRP4 isoform 1 [Sarcophilus
harrisii]
Length = 293
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 143/263 (54%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ DE++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGDEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR+FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDFLREGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENKS---GGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E + GGFI N+E V LSDRE I+RL N I AL K+MLFDTS+ Y YE SL
Sbjct: 206 YPTPEQREEEVGGFIANLEPVPLSDREVISRLRNCIVALVAQKMMLFDTSLLYCYEASLS 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|334311846|ref|XP_003339672.1| PREDICTED: exosome complex component RRP4-like [Monodelphis
domestica]
Length = 293
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 142/263 (53%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ DE++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGDEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR+FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDFLREGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E + +GGFI N+E V LSDRE I+RL N I +L K+MLFDTS+ Y YE SL
Sbjct: 206 YPTPEQREEEAGGFIANLEPVPLSDREVISRLRNCIVSLVAQKMMLFDTSLLYCYEASLS 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|195586086|ref|XP_002082809.1| GD25033 [Drosophila simulans]
gi|194194818|gb|EDX08394.1| GD25033 [Drosophila simulans]
Length = 298
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 161/288 (55%), Positives = 206/288 (71%), Gaps = 7/288 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L E + TPGE + G+M GHGTF +DE IK+SV GV++KV
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV+ +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EGSL+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAID----ENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S E GGF QN+ E V +RE I RL N I
Sbjct: 187 MHFHNLPCGASVILGNNGYIWISPTKGQEEEGGEGGFAQNLNEHVPRGEREVIARLRNSI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA+ K+M++DTSIQYAYEESL+Y ++LL+ + D+ T +L+
Sbjct: 247 LALAKCKLMIYDTSIQYAYEESLRYEAHELLQQNAIYDIGQQTQARLR 294
>gi|291223949|ref|XP_002731965.1| PREDICTED: exosome component 2-like [Saccoglossus kowalevskii]
Length = 291
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/268 (54%), Positives = 198/268 (73%), Gaps = 4/268 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+++PG+ + G+M GHGT+ +D+++ ASV GVVE+VN+L+ V+ + +RY GE+G+VVV
Sbjct: 23 LVSPGDVITSDTGFMRGHGTYMEDDKLHASVAGVVERVNKLICVQPLKTRYNGEVGDVVV 82
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + ++W VDTNS L S L L+SVNLPGGE RRRS +DE MMR++L EGDLISAE+
Sbjct: 83 GRITEVGQKRWRVDTNSRLNSILMLSSVNLPGGELRRRSAEDELMMRQYLSEGDLISAEV 142
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQGILL V PSL++R K+HF NL CGA VILG NGY+W+
Sbjct: 143 QSVFSDGALSLHTRSLKYGKLGQGILLKVSPSLVKRRKTHFHNLPCGASVILGNNGYIWI 202
Query: 212 SAIDENKS----GGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
S EN+S GGFIQN+E V +R I RL N I LAE ++ML+DTS+ Y YE S
Sbjct: 203 SPTVENESSDTAGGFIQNLEPVSEDERGVIARLRNCILGLAEHRLMLYDTSVLYTYETST 262
Query: 268 KYSTYDLLKPESKLDLVLCTAQKLQTLG 295
KY ++LLKP+ +++ KL+ G
Sbjct: 263 KYEIHELLKPDVMEEVIHLARLKLEQEG 290
>gi|195347132|ref|XP_002040108.1| GM15529 [Drosophila sechellia]
gi|194135457|gb|EDW56973.1| GM15529 [Drosophila sechellia]
Length = 298
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 161/288 (55%), Positives = 206/288 (71%), Gaps = 7/288 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L E + TPGE + G+M GHGTF +DE IK+SV GV++KV
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV+ +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EGSL+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAID----ENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S E GGF QN+ E V +RE I RL N I
Sbjct: 187 MHFHNLLCGASVILGNNGYIWISPTKGQEEEGGEGGFAQNLNEHVPRGEREVIARLRNSI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA+ K+M++DTSIQYAYEESL+Y ++LL+ + D+ T +L+
Sbjct: 247 LALAKCKLMIYDTSIQYAYEESLRYEAHELLQQNAIYDIGQQTQARLR 294
>gi|297685558|ref|XP_002820352.1| PREDICTED: exosome complex component RRP4 isoform 1 [Pongo abelii]
Length = 293
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 201/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR+FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|327291047|ref|XP_003230233.1| PREDICTED: exosome complex exonuclease RRP4-like [Anolis
carolinensis]
Length = 293
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/266 (54%), Positives = 199/266 (74%), Gaps = 3/266 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ GYM GHGT+ DE++ ASV G+VE+VN+LV V+A+ +RY GE+G++VV
Sbjct: 26 LVAPGDTITTDPGYMRGHGTYLGDEKLIASVAGLVERVNKLVCVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR++L+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E K +GGF+ ++E V L DRE I+RL N I AL K+ML+DTSI Y YE SL
Sbjct: 206 YPTPEQKDEEAGGFVTDLEPVPLPDREVISRLRNCIMALMAQKLMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKLQTL 294
+ DLLKPE ++VL Q+L L
Sbjct: 266 HQIKDLLKPEVMEEIVLEARQRLLEL 291
>gi|318037498|ref|NP_001187370.1| exosome complex exonuclease rrp4 [Ictalurus punctatus]
gi|308322839|gb|ADO28557.1| exosome complex exonuclease rrp4 [Ictalurus punctatus]
Length = 294
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/287 (51%), Positives = 208/287 (72%), Gaps = 5/287 (1%)
Query: 10 IEIMLASDRIDPLIEIHEFTD--PILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVE 67
+++ L + + L IH +D ++ PG+ + G+M GHGT+ DDE++ ASV G VE
Sbjct: 3 VDMRLPARKQAFLPAIHSSSDGKHLVVPGDVITSDTGFMRGHGTYMDDEKLTASVAGEVE 62
Query: 68 KVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQR 127
+VN+L+ VR + +R+ GE+G+VVVGR+T +Q ++W V TNS L+S L L+SVNLPGGE R
Sbjct: 63 RVNKLICVRPLKTRFNGEVGDVVVGRITEVQQKRWKVGTNSRLDSVLLLSSVNLPGGELR 122
Query: 128 RRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR 187
RRS +DE MR++L+EGDLISAE+ + ++G+L+LHTRSLKYGKLGQG+L+ V PSLI+R
Sbjct: 123 RRSAEDELTMRDYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVLVQVSPSLIKR 182
Query: 188 SKSHFCNLACGAQVILGCNGYVWVSAI---DENKSGGFIQNMEVVKLSDRETITRLNNVI 244
K+HF NL CGA +ILG NGYVW+ + ++GG+ ++E V LSDRE I+RL N +
Sbjct: 183 QKTHFHNLTCGASIILGNNGYVWIYPTPGHQDEEAGGYYTSLEPVPLSDREIISRLRNCL 242
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
ALA KVML+DTSI Y YE SL + D+LKPE ++V+ T Q+L
Sbjct: 243 LALAAHKVMLYDTSILYCYESSLTHQIKDILKPEIVDEIVMETHQRL 289
>gi|224073534|ref|XP_002198761.1| PREDICTED: exosome complex component RRP4 [Taeniopygia guttata]
Length = 294
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/266 (54%), Positives = 197/266 (74%), Gaps = 3/266 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ YM GHGT+ +++++ ASV GVVE+VN+LV VRA+ RY GEIG++VV
Sbjct: 27 LVAPGDTITTDTAYMRGHGTYVEEDKLIASVAGVVERVNKLVCVRALKGRYNGEIGDIVV 86
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RR+S +DE MR++L+EGDLISAE+
Sbjct: 87 GRITEVQQKRWKVETNSRLDSVLLLSSINLPGGELRRKSAEDELAMRDYLQEGDLISAEV 146
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I ++G+++LHTRSLKYGKL QG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 147 QSIFSDGAVSLHTRSLKYGKLAQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 206
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E K +GG+ N+E V LSDRE I+RL N I AL K+MLFDTSI Y YE SL
Sbjct: 207 YPTPEQKDDEAGGYTANLEPVPLSDREVISRLRNCIMALVTHKIMLFDTSILYCYEASLP 266
Query: 269 YSTYDLLKPESKLDLVLCTAQKLQTL 294
+ D+LKPE ++VL Q+L L
Sbjct: 267 HQIKDILKPEVTEEIVLEARQRLLDL 292
>gi|122920914|pdb|2NN6|H Chain H, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 308
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 200/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 41 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 100
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 101 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 160
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 161 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 220
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 221 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLP 280
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 281 HQIKDILKPEIMEEIVMETRQRL 303
>gi|109110020|ref|XP_001106567.1| PREDICTED: exosome complex exonuclease RRP4 isoform 1 [Macaca
mulatta]
Length = 293
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 200/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+TV G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTVTTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N + +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCVISLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|156553719|ref|XP_001600703.1| PREDICTED: exosome complex component RRP4-like [Nasonia
vitripennis]
Length = 302
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 154/300 (51%), Positives = 215/300 (71%), Gaps = 11/300 (3%)
Query: 1 MAEEKDKPVIEIM--LASDRIDPLIEIHEFTDP---ILTPGETVEYLEGYMTGHGTFPDD 55
M+EE +K IM LA +RID + H+ DP + +PGE + ++ GHGT+ D+
Sbjct: 1 MSEENEKEGSGIMVRLAVNRIDQNLPTHQ--DPQVFLYSPGEEISTQPDFLRGHGTYVDE 58
Query: 56 EEI-KASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESAL 114
+E+ +ASV G +E+VN+L+SV+ +RY GEIG+VV+GR+T +Q ++W VD N+ L++AL
Sbjct: 59 QEVLRASVAGRLERVNKLISVKPYKTRYQGEIGDVVIGRITEVQQKRWKVDCNAKLDAAL 118
Query: 115 HLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQ 174
L+SVNLPGGE RRRSV+DE+ MR +L+EGDLI AE+ I +GSL+LHTR LKYGKL Q
Sbjct: 119 LLSSVNLPGGELRRRSVEDEQAMRRYLQEGDLICAEVQSIFADGSLSLHTRVLKYGKLSQ 178
Query: 175 GILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA--IDENKS-GGFIQNMEVVKL 231
GI+L V P+LI+R K+HF NL GA ++LG NGY W+ A D ++S GGF Q++ V
Sbjct: 179 GIMLKVSPALIKRQKTHFHNLTNGACLVLGNNGYAWIGANVADTDRSEGGFTQDLSRVSQ 238
Query: 232 SDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
DRE RL N I +LA+S ++L DTS+ YAYEES+KYS +++L PE +LD+ L T Q+L
Sbjct: 239 EDREVCARLRNCILSLAKSHILLSDTSVTYAYEESMKYSIHEMLIPEVQLDVALLTHQRL 298
>gi|19923403|ref|NP_055100.2| exosome complex component RRP4 [Homo sapiens]
gi|114627214|ref|XP_001166030.1| PREDICTED: uncharacterized protein LOC464801 isoform 4 [Pan
troglodytes]
gi|332255330|ref|XP_003276785.1| PREDICTED: exosome complex component RRP4 isoform 1 [Nomascus
leucogenys]
gi|397503632|ref|XP_003822423.1| PREDICTED: exosome complex component RRP4 [Pan paniscus]
gi|13878748|sp|Q13868.2|EXOS2_HUMAN RecName: Full=Exosome complex component RRP4; AltName: Full=Exosome
component 2; AltName: Full=Ribosomal RNA-processing
protein 4
gi|7023478|dbj|BAA91977.1| unnamed protein product [Homo sapiens]
gi|10433864|dbj|BAB14043.1| unnamed protein product [Homo sapiens]
gi|12653909|gb|AAH00747.1| Exosome component 2 [Homo sapiens]
gi|119608350|gb|EAW87944.1| exosome component 2, isoform CRA_d [Homo sapiens]
gi|123984667|gb|ABM83679.1| exosome component 2 [synthetic construct]
gi|157928498|gb|ABW03545.1| exosome component 2 [synthetic construct]
gi|208966240|dbj|BAG73134.1| exosome component 2 [synthetic construct]
gi|410219780|gb|JAA07109.1| exosome component 2 [Pan troglodytes]
gi|410288876|gb|JAA23038.1| exosome component 2 [Pan troglodytes]
gi|410288878|gb|JAA23039.1| exosome component 2 [Pan troglodytes]
gi|410332469|gb|JAA35181.1| exosome component 2 [Pan troglodytes]
Length = 293
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 200/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|426222926|ref|XP_004005630.1| PREDICTED: exosome complex component RRP4 [Ovis aries]
gi|440900090|gb|ELR51299.1| Exosome complex exonuclease RRP4 [Bos grunniens mutus]
Length = 293
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 142/263 (53%), Positives = 200/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++WV
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWV 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +LA ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEDDAGGFIANLEPVSLADREVISRLRNCIVSLATQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|114053077|ref|NP_001040026.1| exosome complex component RRP4 [Bos taurus]
gi|122143860|sp|Q2KID0.1|EXOS2_BOVIN RecName: Full=Exosome complex component RRP4; AltName: Full=Exosome
component 2; AltName: Full=Ribosomal RNA-processing
protein 4
gi|86827441|gb|AAI12684.1| Exosome component 2 [Bos taurus]
gi|296482080|tpg|DAA24195.1| TPA: exosome complex exonuclease RRP4 [Bos taurus]
Length = 293
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/263 (53%), Positives = 200/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++WV
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWV 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +LA ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEDDAGGFIANLEPVSLTDREVISRLRNCIVSLATQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|402896280|ref|XP_003911232.1| PREDICTED: exosome complex component RRP4 isoform 1 [Papio anubis]
gi|355567399|gb|EHH23740.1| hypothetical protein EGK_07276 [Macaca mulatta]
gi|380787773|gb|AFE65762.1| exosome complex component RRP4 [Macaca mulatta]
gi|380787781|gb|AFE65766.1| exosome complex component RRP4 [Macaca mulatta]
gi|380787783|gb|AFE65767.1| exosome complex component RRP4 [Macaca mulatta]
Length = 293
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 200/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N + +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCVISLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|348532843|ref|XP_003453915.1| PREDICTED: exosome complex component RRP4-like [Oreochromis
niloticus]
Length = 293
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + G+M GHGT+ DD+++ ASV G V++V++L+ VR + +R+ GE+G+VVV
Sbjct: 26 LVVPGDVITSDTGFMRGHGTYVDDDKLTASVAGEVQRVDKLICVRPLKTRFNGEVGDVVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+SVNLPGGE RRRS +DE MRE+L+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMREYLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +G+L+LHTRSLKYGKLGQG+L+ + PSLI+R K+HF NL CGA +ILG NG+VW+
Sbjct: 146 QSVFMDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNLPCGASIILGNNGFVWL 205
Query: 212 SAI---DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E ++GGF ++E V LSDRE I+RL N + ALA KV+L+DTS+ Y YE SL+
Sbjct: 206 YPTPGQQEEEAGGFYTSLEPVSLSDREVISRLRNCLLALAAHKVLLYDTSVLYCYESSLQ 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T QKL
Sbjct: 266 HQVKDILKPEVMEEIVMLTHQKL 288
>gi|62204282|gb|AAH92739.1| Exosome component 2 [Danio rerio]
gi|182889240|gb|AAI64830.1| Exosc2 protein [Danio rerio]
Length = 254
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/249 (57%), Positives = 193/249 (77%), Gaps = 3/249 (1%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
M GHGT+ D++ + ASV G VE+VN+L+ V+ + +RY GE+G+VVVGR+T +Q ++W V+
Sbjct: 1 MRGHGTYMDEDRLTASVAGQVERVNKLICVKPLKTRYNGEVGDVVVGRITEVQQKRWKVE 60
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
TNS L+S L L++VNLPGGE RRRS QDE MR++L+EGDLISAE+ I ++G+L+LHTR
Sbjct: 61 TNSRLDSVLLLSAVNLPGGELRRRSTQDELAMRDYLQEGDLISAEVQSIFSDGALSLHTR 120
Query: 166 SLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVS---AIDENKSGGF 222
SLKYGKLGQG+L+ V PSL++R K+HF NL CGA +ILG NGYVW+S A+ E ++GGF
Sbjct: 121 SLKYGKLGQGVLVYVSPSLVKRQKTHFHNLPCGASLILGNNGYVWLSPTPALQEEQAGGF 180
Query: 223 IQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLD 282
+ME V LSDRE ++RL N + ALA KV+LFDTS+ Y YE SL++ D+LKPE +
Sbjct: 181 YTSMEPVSLSDREVVSRLRNCLLALANQKVLLFDTSVLYCYEASLQHQIKDILKPEIMEE 240
Query: 283 LVLCTAQKL 291
+VL T Q+L
Sbjct: 241 IVLETRQRL 249
>gi|311246656|ref|XP_003122286.1| PREDICTED: exosome complex component RRP4-like [Sus scrofa]
Length = 293
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L +VML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIVSLVTQRVMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEVMEEIVMETRQRL 288
>gi|229366946|gb|ACQ58453.1| Exosome complex exonuclease RRP4 [Anoplopoma fimbria]
Length = 293
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + G+M GHGT+ DD+++ ASV G V++V++L+ VR + +R+ GE+G+VVV
Sbjct: 26 LVVPGDVITSDTGFMRGHGTYVDDDKLTASVAGEVQRVDKLICVRPLKTRFNGEVGDVVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRVT +Q ++W V+TNS L+S L L+SVNLPGGE RRRS +DE MRE+L+EGDLISAE+
Sbjct: 86 GRVTEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMREYLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQG+L+ + PSLI+R K+HF NL CGA +ILG NG+VW+
Sbjct: 146 QSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNLPCGASIILGNNGFVWL 205
Query: 212 SAIDEN---KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E ++GGF ++E V LSDRE I+RL N + ALA KV+L+DTS+ Y YE S+
Sbjct: 206 YPTPEQLDEEAGGFYTSLEPVSLSDREVISRLRNCLLALAAHKVLLYDTSVLYCYESSVP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T QKL
Sbjct: 266 HEVKDILKPEVMEEIVMLTQQKL 288
>gi|351697304|gb|EHB00223.1| Exosome complex exonuclease RRP4 [Heterocephalus glaber]
Length = 293
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W VDTNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVDTNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE ++RL N + +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEDAGGFIANLEPVSLADREVMSRLRNCVVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++VL T Q+L
Sbjct: 266 HQIKDILKPEVMEEIVLETRQRL 288
>gi|357617380|gb|EHJ70757.1| exosome complex exonuclease RRP4 [Danaus plexippus]
Length = 299
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 206/292 (70%), Gaps = 7/292 (2%)
Query: 10 IEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
+ I LAS+R++ + TPGE + ++ +M GHGT+ +D+ +K+SV GV++KV
Sbjct: 5 VSIRLASERVNHCVPCPNELPRFYTPGEVITGMQDFMRGHGTYAEDDSLKSSVAGVMQKV 64
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+ VR + SRY+GEIG+V+VGRV +Q ++W V+TNS L+S L L+SVNLPGGE RRR
Sbjct: 65 NKLICVRPLKSRYVGEIGDVIVGRVLEVQQKRWKVETNSRLDSILQLSSVNLPGGELRRR 124
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR+ L+EGDLISAE+ + ++GSL+LHTRSLKYGKL QG+L+ V PSLI+R K
Sbjct: 125 SAEDEQMMRKHLQEGDLISAEVQSVFSDGSLSLHTRSLKYGKLSQGVLVKVFPSLIKRRK 184
Query: 190 SHFCNLACGAQVILGCNGYVWVSA------IDENKSGGFIQNMEVVKLSDRETITRLNNV 243
+HF NL CG +I+G NGY+W+S +++N + + VK SDRE I R+ N
Sbjct: 185 NHFHNLPCGVSIIIGNNGYIWISPHKQDVILEDNHDEIENYDHQAVKRSDREIIARVKNC 244
Query: 244 IKALAESKVMLFDTSIQYAYEESLKY-STYDLLKPESKLDLVLCTAQKLQTL 294
I AL SK+ML DTSI +A+E+SLKY + +LL PE+ LD+ T L +
Sbjct: 245 ISALVASKMMLDDTSIMFAFEQSLKYDNVKELLDPEAMLDVAFLTQHMLNDI 296
>gi|149410316|ref|XP_001507703.1| PREDICTED: exosome complex component RRP4-like [Ornithorhynchus
anatinus]
Length = 293
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/266 (53%), Positives = 198/266 (74%), Gaps = 3/266 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ ++E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDPGFMRGHGTYMENEKLIASVVGCVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRVT +Q ++W VDTNS L+S L L+S+NLPGGE RRRS +DE MR+FL+EGDLISAE+
Sbjct: 86 GRVTEVQQKRWKVDTNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA +ILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASIILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E K +GGFI N+E + +SDRE I+RL N + L KVML+DTSI Y YE SL
Sbjct: 206 YPTSEQKEEEAGGFIANLEPIPMSDREVISRLRNCVVCLVSQKVMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKLQTL 294
+ D+LK E ++ L T Q+L L
Sbjct: 266 HQIKDILKQEVMEEIALETRQRLMEL 291
>gi|296191026|ref|XP_002743446.1| PREDICTED: exosome complex component RRP4 isoform 1 [Callithrix
jacchus]
Length = 293
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFAANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|291414823|ref|XP_002723656.1| PREDICTED: exosome component 2 [Oryctolagus cuniculus]
Length = 293
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGCVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E K +GGFI ++E V L+DRE I+RL N + ALA ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEYKEEDAGGFIADLEPVSLADREVISRLRNCVVALATQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++VL T Q+L
Sbjct: 266 HQIKDILKPEITEEIVLETRQRL 288
>gi|149738212|ref|XP_001499276.1| PREDICTED: exosome complex component RRP4-like [Equus caballus]
Length = 293
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEDAGGFIANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++VL T Q+L
Sbjct: 266 HPIKDILKPEIMEEIVLETRQRL 288
>gi|21450259|ref|NP_659135.1| exosome complex component RRP4 [Mus musculus]
gi|62900370|sp|Q8VBV3.1|EXOS2_MOUSE RecName: Full=Exosome complex component RRP4; AltName: Full=Exosome
component 2; AltName: Full=Ribosomal RNA-processing
protein 4
gi|18204420|gb|AAH21485.1| Exosome component 2 [Mus musculus]
gi|18256844|gb|AAH21807.1| Exosome component 2 [Mus musculus]
gi|74184951|dbj|BAE39092.1| unnamed protein product [Mus musculus]
gi|74188234|dbj|BAE25788.1| unnamed protein product [Mus musculus]
gi|148676565|gb|EDL08512.1| exosome component 2 [Mus musculus]
Length = 293
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V LSDRE I+RL N + L ++MLFDTSI Y YE SL
Sbjct: 206 YPTPEHKDEDAGGFIANLEPVALSDREVISRLRNCVVLLVTQRMMLFDTSILYCYEASLA 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE +++L T Q+L
Sbjct: 266 HQIKDILKPEVMEEIMLETRQRL 288
>gi|403256505|ref|XP_003920914.1| PREDICTED: exosome complex component RRP4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 293
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ +M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTAFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF+ N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFVANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|355752989|gb|EHH57035.1| hypothetical protein EGM_06594 [Macaca fascicularis]
Length = 293
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKIHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N + +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCVISLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|395844388|ref|XP_003794944.1| PREDICTED: exosome complex component RRP4 [Otolemur garnettii]
Length = 293
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEDAGGFIANLEPVALADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|392877068|gb|AFM87366.1| exosome complex component RRP4-like protein [Callorhinchus milii]
gi|392878374|gb|AFM88019.1| exosome complex component RRP4-like protein [Callorhinchus milii]
Length = 293
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 141/268 (52%), Positives = 199/268 (74%), Gaps = 3/268 (1%)
Query: 27 EFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
E + ++ PG+ + G+M GHGT+ +DE++ ASV G VE+VN+L+ V+ + +RY GE+
Sbjct: 21 EGSKHLVAPGDIITTDTGFMRGHGTYMEDEKLIASVAGAVERVNKLICVQPLQTRYNGEV 80
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G+VVVGR+T +Q ++W V+TNS L+S L L+SVNLPGGE RRRS +DE MMR++L+EGDL
Sbjct: 81 GDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELMMRDYLQEGDL 140
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCN 206
ISAE+ + +G+L+LHTRSLKYGKLGQG L+ V PSL++R K+HF NL CGA +ILG N
Sbjct: 141 ISAEVQAVFADGALSLHTRSLKYGKLGQGSLVQVSPSLVKRRKTHFHNLPCGASIILGNN 200
Query: 207 GYVWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAY 263
GY+W+ E K +GGF+ N+E V SDRE I+RL N + AL K++L+DTS+ Y Y
Sbjct: 201 GYIWIYPFAEQKEDEAGGFVTNLEPVPSSDREVISRLRNCVIALNVHKMLLYDTSVLYCY 260
Query: 264 EESLKYSTYDLLKPESKLDLVLCTAQKL 291
E SL++ ++LKPE ++V+ T Q+L
Sbjct: 261 ETSLQHQIKEILKPEVMEEIVMETRQRL 288
>gi|432116590|gb|ELK37383.1| Exosome complex component RRP4 [Myotis davidii]
Length = 293
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF+ N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEDAGGFVANLEPVSLTDREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|354502184|ref|XP_003513167.1| PREDICTED: exosome complex component RRP4-like [Cricetulus griseus]
Length = 293
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V LSDRE I+RL N + L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKDEDAGGFIANLEPVALSDREVISRLRNCVVLLVTQRMMLYDTSILYCYEASLA 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE +++L T Q+L
Sbjct: 266 HQIKDILKPEIMEEIMLETRQRL 288
>gi|301758864|ref|XP_002915253.1| PREDICTED: exosome complex exonuclease RRP4-like [Ailuropoda
melanoleuca]
Length = 293
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEDAGGFTANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ DLLKPE ++V+ T Q+L
Sbjct: 266 HQIKDLLKPEIMEEVVMETRQRL 288
>gi|344257953|gb|EGW14057.1| Exosome complex exonuclease RRP4 [Cricetulus griseus]
Length = 291
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 24 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 83
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 84 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 143
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 144 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 203
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V LSDRE I+RL N + L ++ML+DTSI Y YE SL
Sbjct: 204 YPTPEHKDEDAGGFIANLEPVALSDREVISRLRNCVVLLVTQRMMLYDTSILYCYEASLA 263
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE +++L T Q+L
Sbjct: 264 HQIKDILKPEIMEEIMLETRQRL 286
>gi|195121992|ref|XP_002005496.1| GI19036 [Drosophila mojavensis]
gi|193910564|gb|EDW09431.1| GI19036 [Drosophila mojavensis]
Length = 300
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 165/294 (56%), Positives = 209/294 (71%), Gaps = 7/294 (2%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L + E I TPGE + G+M GHGTF +DE IKASV GV+EKV
Sbjct: 7 IDLALDRVDWTALADNQEQLPRIYTPGEVLMPEAGFMRGHGTFVEDENIKASVAGVIEKV 66
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY+GEIG+VVV RV + ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVLEVGQKRWRVDTNSRLDSLLLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ + EG+L+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNVFEEGTLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAIDENKS----GGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S + GGF QN+ EVV ++RE I RL N I
Sbjct: 187 MHFHNLPCGASVILGNNGYIWISPTKTDDQVGGEGGFAQNLTEVVPRNEREVIARLRNCI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLGLAD 298
ALA+ K+ML+DTSIQYAYEESLKY + +LL+ D+ T +L+ + L D
Sbjct: 247 LALAKCKLMLYDTSIQYAYEESLKYESRELLQQHVIFDIGEQTQARLRDVDLMD 300
>gi|417398482|gb|JAA46274.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp4
[Desmodus rotundus]
Length = 293
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 138/263 (52%), Positives = 199/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF+ N+E V L+DRE I+RL N + +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEDAGGFVANLEPVSLADREVISRLRNCVVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEVVMETRQRL 288
>gi|47223594|emb|CAF99203.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1465
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 195/263 (74%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ PG+ + G+M GHGT+ D++ + ASV G VE+V++L+ V+ + +R+ GE+G+VVV
Sbjct: 26 FVVPGDIITSDTGFMRGHGTYVDEDNLTASVAGEVERVDKLICVKPLKTRFNGEVGDVVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L++VNLPGGE RRRS +DE MRE+L EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSAVNLPGGELRRRSAEDELTMREYLHEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQG+L+ V PSLI+R K+HF NL CGA VIL NG+VW+
Sbjct: 146 QSVFSDGALSLHTRSLKYGKLGQGVLVQVSPSLIKRQKTHFHNLPCGASVILANNGFVWL 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E + +GGF ++E V L+DRE I+RL N I ALA KV+LFDTS+ Y +E SL+
Sbjct: 206 YPTPEQQDEEAGGFYTSLEPVNLADREVISRLRNCIMALAAHKVLLFDTSVLYCFESSLQ 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T QKL
Sbjct: 266 HQVKDILKPEVMEEVVMLTQQKL 288
>gi|344271564|ref|XP_003407607.1| PREDICTED: exosome complex component RRP4-like [Loxodonta africana]
Length = 293
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I + ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIVLMVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|431898919|gb|ELK07289.1| Exosome complex exonuclease RRP4 [Pteropus alecto]
Length = 293
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E K +GGF N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEQKEEDAGGFTANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|387914922|gb|AFK11070.1| exosome complex component RRP4-like protein [Callorhinchus milii]
Length = 293
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/268 (52%), Positives = 198/268 (73%), Gaps = 3/268 (1%)
Query: 27 EFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
E + ++ PG+ + G+M GHGT+ +DE++ ASV G VE+VN+L+ V+ + +RY GE+
Sbjct: 21 EGSKHLVAPGDIITTDTGFMRGHGTYMEDEKLIASVAGAVERVNKLICVQPLQTRYNGEV 80
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G+VVVGR+T +Q ++W V+TNS L+S L L+SVNLPGGE RRRS +DE MMR++L+EGDL
Sbjct: 81 GDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELMMRDYLQEGDL 140
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCN 206
IS E+ + +G+L+LHTRSLKYGKLGQG L+ V PSL++R K+HF NL CGA +ILG N
Sbjct: 141 ISGEVQAVFADGALSLHTRSLKYGKLGQGSLVQVSPSLVKRRKTHFHNLPCGASIILGNN 200
Query: 207 GYVWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAY 263
GY+W+ E K +GGF+ N+E V SDRE I+RL N + AL K++L+DTS+ Y Y
Sbjct: 201 GYIWIYPFAEQKEDEAGGFVTNLEPVPSSDREVISRLRNCVIALNVHKMLLYDTSVLYCY 260
Query: 264 EESLKYSTYDLLKPESKLDLVLCTAQKL 291
E SL++ ++LKPE ++V+ T Q+L
Sbjct: 261 ETSLQHQIKEILKPEVMEEIVMETRQRL 288
>gi|213511156|ref|NP_001134204.1| Exosome complex exonuclease RRP4 [Salmo salar]
gi|209731444|gb|ACI66591.1| Exosome complex exonuclease RRP4 [Salmo salar]
Length = 295
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + G+M GHGT+ D+E++ ASV G VE+VN+L+ VR + +R+ GE+G+VVV
Sbjct: 28 LVVPGDVITSDTGFMRGHGTYMDEEKLTASVAGEVERVNKLICVRPLRTRFNGEVGDVVV 87
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+SVNLPGGE RRRS +DE MR++L+EGDLISAE+
Sbjct: 88 GRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMRDYLQEGDLISAEV 147
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQG+L+ + PSLI+R K+HF NL CGA +ILG NG+VW+
Sbjct: 148 QSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNLPCGASIILGNNGFVWL 207
Query: 212 SAI---DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+ ++GG+ ++E V LSDRE I+RL N + AL KV+L+DTS+ Y YE SL
Sbjct: 208 YPAPGQQDEEAGGYYTSLEPVSLSDREVISRLRNCLLALGAHKVLLYDTSVLYCYESSLP 267
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T QKL
Sbjct: 268 HQIKDILKPEVMEEIVMVTRQKL 290
>gi|223648204|gb|ACN10860.1| Exosome complex exonuclease RRP4 [Salmo salar]
Length = 295
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + G+M GHGT+ D+E++ ASV G VE+VN+L+ VR + +R+ GE+G+VVV
Sbjct: 28 LVVPGDVITSDTGFMRGHGTYMDEEKLTASVAGEVERVNKLICVRPLKTRFNGEVGDVVV 87
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+SVNLPGGE RRRS +DE MR++L+EGDLISAE+
Sbjct: 88 GRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMRDYLQEGDLISAEV 147
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQG+L+ + PSLI+R K+HF NL CGA +ILG NG+VW+
Sbjct: 148 QSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNLPCGASIILGNNGFVWL 207
Query: 212 SAI---DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+ ++GG+ ++E V LSDRE I+RL N + AL KV+L+DTS+ Y YE SL
Sbjct: 208 YPTPGHQDEEAGGYYTSLEPVSLSDREVISRLRNCLLALGAHKVLLYDTSVLYCYESSLP 267
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T QKL
Sbjct: 268 HQIKDILKPEVMEEIVMMTRQKL 290
>gi|224587324|gb|ACN58640.1| Exosome complex exonuclease RRP4 [Salmo salar]
Length = 290
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + G+M GHGT+ D+E++ ASV G VE+VN+L+ VR + +R+ GE+G+VVV
Sbjct: 23 LVVPGDVITSDTGFMRGHGTYMDEEKLTASVAGEVERVNKLICVRPLKTRFNGEVGDVVV 82
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+SVNLPGGE RRRS +DE MR++L+EGDLISAE+
Sbjct: 83 GRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMRDYLQEGDLISAEV 142
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQG+L+ + PSLI+R K+HF NL CGA +ILG NG+VW+
Sbjct: 143 QSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNLPCGASIILGNNGFVWL 202
Query: 212 SAI---DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+ ++GG+ ++E V LSDRE I+RL N + AL KV+L+DTS+ Y YE SL
Sbjct: 203 YPTPGHQDEEAGGYYTSLEPVSLSDREVISRLRNCLLALGAHKVLLYDTSVLYCYESSLP 262
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T QKL
Sbjct: 263 HQIKDILKPEVMEEIVMMTRQKL 285
>gi|157822341|ref|NP_001102422.1| exosome complex exonuclease RRP4 [Rattus norvegicus]
gi|149039049|gb|EDL93269.1| exosome component 2 (predicted) [Rattus norvegicus]
Length = 293
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG L+ V P+L++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGALVQVSPALVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V LSDRE I+RL N I L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKDEEAGGFIANLEPVSLSDREVISRLRNCIVLLVTQRMMLYDTSILYCYEASLA 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE +++L T Q+L
Sbjct: 266 HQIKDILKPEVMEEIMLETRQRL 288
>gi|355686792|gb|AER98188.1| exosome component 2 [Mustela putorius furo]
Length = 291
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF ++E V L+DRE I+RL N I L +VML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEGAGGFAADLEPVSLADREVISRLRNCIVLLVTQRVMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ DLLKPE ++V+ T Q+L
Sbjct: 266 HQIKDLLKPEIMEEVVMETRQRL 288
>gi|410904148|ref|XP_003965554.1| PREDICTED: exosome complex component RRP4-like [Takifugu rubripes]
Length = 293
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/263 (52%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + G+M GHGT+ D++++ ASV G VE+V++L+ V+ + +R+ GE+G+VVV
Sbjct: 26 LVVPGDIITSDTGFMRGHGTYVDEDKLTASVAGEVERVDKLICVKPLKTRFNGEVGDVVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L++VNLPGGE RRRS +DE MRE+L EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSAVNLPGGELRRRSAEDELTMREYLHEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+L+LHTRSLKYGKLGQG+L+ V PSLI+R K+HF NL CGA +IL NG+VW+
Sbjct: 146 QSVFSDGALSLHTRSLKYGKLGQGVLVQVSPSLIKRQKTHFHNLPCGASIILANNGFVWL 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E + +GGF ++E V LSDRE I+RL N + ALA KV+L+DTS+ Y +E SL+
Sbjct: 206 YPTPEQQEEEAGGFYTSLEPVNLSDREVISRLRNCLMALAAHKVLLYDTSVLYCFESSLQ 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T QKL
Sbjct: 266 HQVKDILKPEVMEEIVMLTQQKL 288
>gi|345806241|ref|XP_850770.2| PREDICTED: exosome complex component RRP4 [Canis lupus familiaris]
Length = 432
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 138/263 (52%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF ++E + L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEDTGGFTAHLEPISLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ DLLKPE ++V+ T Q+L
Sbjct: 266 HQIKDLLKPEIMEEVVMETRQRL 288
>gi|321477199|gb|EFX88158.1| hypothetical protein DAPPUDRAFT_305543 [Daphnia pulex]
Length = 292
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 207/289 (71%), Gaps = 6/289 (2%)
Query: 9 VIEIMLASDRIDPLIEIHEFTDP--ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVV 66
+++I LAS+ + P + + T+P ++TPG + G+M GHGT+ D+ + +SV GVV
Sbjct: 1 MVDIRLASE-VPPFHIVADSTEPKHLVTPGSLITKETGFMRGHGTYMQDDCLYSSVAGVV 59
Query: 67 EKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ 126
E+VNQL+SVR + SRY GEIG+VV+GRVT + ++W +DTN+ L+S L L SVNLPGGE
Sbjct: 60 ERVNQLISVRPLKSRYHGEIGDVVIGRVTEVSQKRWKLDTNARLDSVLLLQSVNLPGGEL 119
Query: 127 RRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIR 186
RRRS +DE MR++LKEGDL+SAE+ I +G+L+LHTRS+KYGKL QG L+ V PSLIR
Sbjct: 120 RRRSAEDELAMRQYLKEGDLVSAEVQNIFNDGALSLHTRSMKYGKLSQGCLIKVSPSLIR 179
Query: 187 RSKSHFCNLACGAQVILGCNGYVWVS-AIDENKSGGFIQNMEVVKLSDRETITRLNNVIK 245
R K+HF NL CGA +I+G NG+VW+ + ++ +GGF+QN+E V +DR+ I+RL N +
Sbjct: 180 RQKTHFHNLPCGASIIMGNNGFVWICPTLLDDGAGGFVQNLETVPHADRQAISRLRNCVT 239
Query: 246 ALAESKVMLFDTSIQYAYEESLK--YSTYDLLKPESKLDLVLCTAQKLQ 292
ALA K+M++DTSI +AY+ S+ DLL P+ ++ L ++ +
Sbjct: 240 ALAHCKMMIYDTSIMHAYDASVNAGLEIKDLLLPDKIKEIALMVRKQFE 288
>gi|115727635|ref|XP_789513.2| PREDICTED: exosome complex component RRP4-like [Strongylocentrotus
purpuratus]
Length = 291
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/272 (51%), Positives = 194/272 (71%), Gaps = 6/272 (2%)
Query: 27 EFTDP--ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
EFT+P ++TPG T+ +M GHGT+ +++E+ ASV GVVEKVN+L+SVR + +RY G
Sbjct: 16 EFTEPQRLVTPGATITADSDFMRGHGTYMEEDELIASVAGVVEKVNKLISVRPLKTRYNG 75
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
E+G+V+VGR+ + ++W VD NS L + L L++VNLPGGE R+RS +DE MR++L EG
Sbjct: 76 EVGDVIVGRIQEVGQKRWKVDVNSRLNAILMLSAVNLPGGELRKRSAEDELKMRQYLTEG 135
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILG 204
DLISAE+ + ++G+L+LHTRSLKYGKLGQGI++ V PSLI+R K+HF NL CGA VILG
Sbjct: 136 DLISAEVQSVFSDGALSLHTRSLKYGKLGQGIMVRVSPSLIKRRKTHFHNLTCGASVILG 195
Query: 205 CNGYVWVSAI----DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQ 260
NGYVW++ +E GGF+QN++ V DR + RL N I LA+ ++ML+DTS+
Sbjct: 196 NNGYVWITRTPTEEEEAPDGGFVQNLQPVSDEDRRVLARLRNCILGLADHRMMLYDTSVI 255
Query: 261 YAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
Y Y S Y DLL P+ D++L Q+L
Sbjct: 256 YTYAASEDYPVADLLNPDIMKDVILKVRQQLN 287
>gi|53136852|emb|CAG32755.1| hypothetical protein RCJMB04_35a17 [Gallus gallus]
Length = 254
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/252 (55%), Positives = 189/252 (75%), Gaps = 3/252 (1%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
M GHGT+ D+E++ ASV G VE+VN+LV V + +RY GE+G++VVGR+T +Q ++W V+
Sbjct: 1 MRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNGEVGDIVVGRITEVQQKRWKVE 60
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
TNS L+S L L+S+NLPGGE RRRS +DE MR++L+EGDLISAE+ + ++G+++LHTR
Sbjct: 61 TNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEVQSVFSDGAVSLHTR 120
Query: 166 SLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGF 222
SLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+ E K +GGF
Sbjct: 121 SLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEQKDEEAGGF 180
Query: 223 IQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLD 282
N+E V LSDRE I+RL N + AL K+MLFDTSI Y YE SL + D+LKPE +
Sbjct: 181 TTNLEPVPLSDREVISRLRNCVVALVTQKLMLFDTSILYCYEASLPHQIKDILKPEVMEE 240
Query: 283 LVLCTAQKLQTL 294
+VL T QKL L
Sbjct: 241 IVLETRQKLLDL 252
>gi|410979296|ref|XP_003996021.1| PREDICTED: exosome complex component RRP4 isoform 1 [Felis catus]
Length = 293
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 195/263 (74%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGTNGFIWI 205
Query: 212 SAI---DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E +GG N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPGHKEEDAGGLTANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>gi|307199565|gb|EFN80153.1| Exosome complex exonuclease RRP4 [Harpegnathos saltator]
Length = 296
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/289 (50%), Positives = 202/289 (69%), Gaps = 5/289 (1%)
Query: 8 PVIEIMLASDRIDPLIEIHE-FTDPILTPGETVEYLEGYMTGHGTFPD-DEEIKASVGGV 65
PVI + LA +R+D + +E + TPGE + ++ GHGT+ D D ++A+VGGV
Sbjct: 5 PVINVRLAMNRVDFNLTGNEGIQTRLYTPGEEISNQLDFLRGHGTYVDEDNTLRAAVGGV 64
Query: 66 VEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGE 125
+EKVN+L+SVR + +RY GEIG+V+VGR+T +Q ++W VDTNS L+S L L+SVNLPGGE
Sbjct: 65 LEKVNKLISVRPLKARYQGEIGDVIVGRITEVQQKRWKVDTNSKLDSVLLLSSVNLPGGE 124
Query: 126 QRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI 185
RRRS +DE+ MR +L+EGDL+ AE+ I + SL+LHTR LKYGKL QGI+L VPP LI
Sbjct: 125 LRRRSAEDEQTMRRYLQEGDLVCAEVQSIFADSSLSLHTRVLKYGKLSQGIMLKVPPMLI 184
Query: 186 RRSKSHFCNLACGAQVILGCNGYVWVSAIDEN---KSGGFIQNMEVVKLSDRETITRLNN 242
+R K+HF L +ILG NGYVW+ A +N GGF +++ + +RE TRL N
Sbjct: 185 QRKKTHFHYLENSTSLILGNNGYVWIGANAQNADRSEGGFTEDLSHIPQENREVCTRLRN 244
Query: 243 VIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
I LA+ ++L DTS+ YAYEES+KY+ +LL+ E+ +D+ L T Q+L
Sbjct: 245 CILILAQCNMLLSDTSVTYAYEESMKYTVSELLESEAMVDISLLTHQRL 293
>gi|260786192|ref|XP_002588142.1| hypothetical protein BRAFLDRAFT_118871 [Branchiostoma floridae]
gi|229273301|gb|EEN44153.1| hypothetical protein BRAFLDRAFT_118871 [Branchiostoma floridae]
Length = 279
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/261 (53%), Positives = 189/261 (72%), Gaps = 8/261 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPG+ + GYM GHGT+ DD+++KAS+ GVVE+VN+L+ V+ + +RY GEIG+VVV
Sbjct: 23 LVTPGDVITTDTGYMRGHGTYMDDDKLKASLAGVVERVNKLICVQPLKTRYNGEIGDVVV 82
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRVT + ++W VD NS L++ L L++VNLPGGE RRRS +DE MMRE+L EGDLISAE+
Sbjct: 83 GRVTEVGQRRWRVDVNSRLDAVLMLSAVNLPGGELRRRSAEDELMMREYLVEGDLISAEV 142
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I +G+L+LHTRSLKYGKL QG+++ V PSL++R K+HF NL CGA VILG NGYVW+
Sbjct: 143 QAIFHDGALSLHTRSLKYGKLAQGVMVQVSPSLVKRRKTHFHNLPCGASVILGNNGYVWI 202
Query: 212 SAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYST 271
S + + + V +DRE I RL N I +LA K+ML+DTS+ YAYE S +Y
Sbjct: 203 SPT--------VNDEKPVPSTDREVIARLRNCILSLATHKLMLYDTSVLYAYEASRQYQV 254
Query: 272 YDLLKPESKLDLVLCTAQKLQ 292
DLL+P+ + T Q+LQ
Sbjct: 255 KDLLQPDIAEKVADDTRQRLQ 275
>gi|395506260|ref|XP_003757453.1| PREDICTED: exosome complex component RRP4 isoform 2 [Sarcophilus
harrisii]
Length = 285
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/263 (52%), Positives = 191/263 (72%), Gaps = 11/263 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ DE++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGDEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR+FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDFLREGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGK V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 197
Query: 212 SAIDENKS---GGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E + GGFI N+E V LSDRE I+RL N I AL K+MLFDTS+ Y YE SL
Sbjct: 198 YPTPEQREEEVGGFIANLEPVPLSDREVISRLRNCIVALVAQKMMLFDTSLLYCYEASLS 257
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 258 HQIKDILKPEIMEEIVMETRQRL 280
>gi|146218712|emb|CAM96513.1| RRP4 protein [Chironomus tentans]
Length = 291
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/272 (51%), Positives = 195/272 (71%), Gaps = 2/272 (0%)
Query: 25 IHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
I E I T GE + + +M GHGT+ +D IK+SV GVV+++N+L+SV + S+Y+G
Sbjct: 19 IEESNCRIFTTGEVITEQKDFMRGHGTYLEDGFIKSSVVGVVKQINKLISVVPLKSKYVG 78
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
EIG+VVVGRVT + ++W +DTNS L+S L ++S+NLPGGE RRR+ +DE+ MR+ L+E
Sbjct: 79 EIGDVVVGRVTEITKKRWKIDTNSRLDSVLLISSINLPGGELRRRNAEDEQSMRKLLQEE 138
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILG 204
DL+SAE+ + T+GSL+LHTRSLKYGKL QGIL++V PSLI+R K+HF NL CG VI+G
Sbjct: 139 DLLSAEVQNVYTDGSLSLHTRSLKYGKLSQGILISVSPSLIKRRKNHFHNLPCGVSVIIG 198
Query: 205 CNGYVWVSAI--DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYA 262
NGY+WV+ I E + GGF Q ++ V DRETI R+ N I+AL+ VM++DTSI YA
Sbjct: 199 NNGYIWVAPIVHVEEQGGGFAQCLDPVSKGDRETIVRVKNCIQALSACYVMIYDTSIMYA 258
Query: 263 YEESLKYSTYDLLKPESKLDLVLCTAQKLQTL 294
YEES+KY +LL + ++ Q++ L
Sbjct: 259 YEESMKYDVKELLNQDVMYEVGFNAKQRILLL 290
>gi|348570400|ref|XP_003470985.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP4-like
[Cavia porcellus]
Length = 303
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 134/247 (54%), Positives = 189/247 (76%), Gaps = 3/247 (1%)
Query: 48 GHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTN 107
GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VVGR+T +Q ++W VDTN
Sbjct: 52 GHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVDTN 111
Query: 108 SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSL 167
S L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+ + ++G+++LHTRSL
Sbjct: 112 SRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSL 171
Query: 168 KYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQ 224
+YGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+ E+K +GGFI
Sbjct: 172 RYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKDEDAGGFIA 231
Query: 225 NMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV 284
++E V L+DRE I+RL N + +L ++ML+DTSI Y YE SL + D+LKPE ++V
Sbjct: 232 DLEPVSLADREVISRLRNCVVSLVTQRMMLYDTSILYCYEASLPHQIKDILKPEVMEEIV 291
Query: 285 LCTAQKL 291
L T Q+L
Sbjct: 292 LETRQRL 298
>gi|322791339|gb|EFZ15829.1| hypothetical protein SINV_08775 [Solenopsis invicta]
Length = 639
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 201/289 (69%), Gaps = 5/289 (1%)
Query: 8 PVIEIMLASDRIDPLIEIHEFTDPIL-TPGETVEYLEGYMTGHGTFPD-DEEIKASVGGV 65
P I LA +R+D + ++ P L TPGE + ++ GHGT+ D D+ ++ASV G+
Sbjct: 5 PPINARLAVNRVDFNLITNDGVQPRLYTPGEEISSQPDFLRGHGTYVDEDKTLRASVAGI 64
Query: 66 VEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGE 125
+EKVN+L+S+R + +RY GEIG+++VGR+T +Q ++W VD N+ L++ L L+SVNLPGGE
Sbjct: 65 LEKVNKLISIRPLKARYNGEIGDLIVGRITEVQQKRWKVDVNAKLDAVLLLSSVNLPGGE 124
Query: 126 QRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI 185
RRRS +DE+ MR +L+EGDLI AE+ I +GSL+LH R LKYGKL QGI+L VPP LI
Sbjct: 125 LRRRSAEDEQTMRRYLQEGDLICAEVQSIFADGSLSLHARVLKYGKLSQGIMLKVPPMLI 184
Query: 186 RRSKSHFCNLACGAQVILGCNGYVWVSAIDEN---KSGGFIQNMEVVKLSDRETITRLNN 242
+R K+H+ L GA +ILG NGYVW+ A +N GGF +++ + + +R TRL N
Sbjct: 185 QRKKTHYHTLESGAILILGYNGYVWIGANIQNVDKSEGGFTEDLSKIPVENRNVCTRLRN 244
Query: 243 VIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
I LA+ ++L DTS+ YAYEES KY ++LL+PE +D+ L T Q+L
Sbjct: 245 CILILAQCNMLLSDTSVTYAYEESSKYEVHELLEPEPMVDVSLLTHQRL 293
>gi|449266767|gb|EMC77783.1| Exosome complex exonuclease RRP4, partial [Columba livia]
Length = 282
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 143/268 (53%), Positives = 192/268 (71%), Gaps = 5/268 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ GYM GHGT+ +DE++ ASV G VE+VN+LV VRA+ +RY GE+G++VV
Sbjct: 13 LVAPGDTITTDTGYMRGHGTYVEDEKLIASVAGAVERVNKLVCVRALKTRYNGEVGDIVV 72
Query: 92 GRVT--GLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
GR+T L V+ + L L+S+NLPGGE RRRS +DE MR++L+EGDLISA
Sbjct: 73 GRITEVNLSFIPVVLGRRMVPGWLLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISA 132
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ + ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++
Sbjct: 133 EVQSVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFI 192
Query: 210 WVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
W+ E K +GGF N+E V LSDRE I+RL N I ALA K+MLFDTSI Y YE S
Sbjct: 193 WIYPTPEQKDEEAGGFTHNLEPVPLSDREVISRLRNCIVALATQKLMLFDTSILYCYEAS 252
Query: 267 LKYSTYDLLKPESKLDLVLCTAQKLQTL 294
L + D+LKPE ++VL T Q+L L
Sbjct: 253 LPHQIKDILKPEVMEEIVLETRQRLLDL 280
>gi|297270040|ref|XP_002800005.1| PREDICTED: exosome complex exonuclease RRP4 isoform 2 [Macaca
mulatta]
Length = 285
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/263 (51%), Positives = 193/263 (73%), Gaps = 11/263 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+TV G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTVTTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGK V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 197
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N + +L ++ML+DTSI Y YE SL
Sbjct: 198 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCVISLVTQRMMLYDTSILYCYEASLP 257
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 258 HQIKDILKPEIMEEIVMETRQRL 280
>gi|390458442|ref|XP_003732111.1| PREDICTED: exosome complex component RRP4 [Callithrix jacchus]
Length = 285
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 135/263 (51%), Positives = 192/263 (73%), Gaps = 11/263 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGK V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 197
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 198 YPTPEHKEEEAGGFAANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 257
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 258 HQIKDILKPEIMEEIVMETRQRL 280
>gi|193695380|ref|XP_001950290.1| PREDICTED: exosome complex exonuclease RRP4-like [Acyrthosiphon
pisum]
Length = 292
Score = 280 bits (716), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 142/289 (49%), Positives = 198/289 (68%), Gaps = 3/289 (1%)
Query: 10 IEIMLASDRIDPLIEIHEFTDPIL-TPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEK 68
I I LAS + + PI+ TPGE + G+M GHGT+ +KA+V GV +
Sbjct: 3 ISISLASKKTRHAVLKPSSNPPIIFTPGEKIRDQTGFMRGHGTYVSAGSLKATVAGVEQN 62
Query: 69 VNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRR 128
+N+LV+V + RY GEIG+VV+ RVT L ++W VD N+ L++ L LTS+ LPGGE RR
Sbjct: 63 INKLVTVSPLRCRYNGEIGDVVIARVTELVHKRWKVDINARLDAVLLLTSIQLPGGELRR 122
Query: 129 RSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRS 188
R ++DE+ MR +L EGDLISAE+H + +GSL+LH RSLKYGKLGQG+L+ V +LI+RS
Sbjct: 123 RGMEDEQSMRSYLSEGDLISAEVHSVFADGSLSLHMRSLKYGKLGQGVLVKVQSNLIKRS 182
Query: 189 KSHFCNLACGAQVILGCNGYVWVSAIDENKSG-GF-IQNMEVVKLSDRETITRLNNVIKA 246
K+HF NL+ G VILG NGY+W+ ++NK GF + +VV + DR+TI+R+ NV+ A
Sbjct: 183 KNHFHNLSAGVSVILGNNGYIWIEPTNDNKDPVGFEVDLQQVVDIGDRQTISRVRNVVLA 242
Query: 247 LAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLG 295
L+ K++++DTSIQYA EES KY+ DLL E+ D+ T +LQ +G
Sbjct: 243 LSYYKMLIYDTSIQYALEESNKYTVSDLLTAEACYDIANLTRHRLQAMG 291
>gi|281349497|gb|EFB25081.1| hypothetical protein PANDA_003252 [Ailuropoda melanoleuca]
Length = 268
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 130/241 (53%), Positives = 184/241 (76%), Gaps = 3/241 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEDAGGFTANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 Y 269
+
Sbjct: 266 H 266
>gi|403256507|ref|XP_003920915.1| PREDICTED: exosome complex component RRP4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 285
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/263 (50%), Positives = 192/263 (73%), Gaps = 11/263 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ +M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTAFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGK V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 197
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF+ N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 198 YPTPEHKEEEAGGFVANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 257
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 258 HQIKDILKPEIMEEIVMETRQRL 280
>gi|340373040|ref|XP_003385051.1| PREDICTED: exosome complex component RRP4-like [Amphimedon
queenslandica]
Length = 287
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/277 (49%), Positives = 195/277 (70%), Gaps = 15/277 (5%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+ PG+ + G+M GHGT+ D ++ ASV GVVE+VN+L+ V + S+Y GEIG+VVVG
Sbjct: 10 VAPGDVITANLGFMRGHGTYESDGKLLASVAGVVERVNRLLCVHPLKSKYNGEIGDVVVG 69
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ +Q ++W V+T+S L+S L+L+S+NLPGG RRRS +DE M+R++LKEGDLISAE+
Sbjct: 70 RIIEVQQKRWKVETSSRLDSVLNLSSINLPGGVLRRRSAEDEVMIRDYLKEGDLISAEVQ 129
Query: 153 QISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVS 212
Q++++GSL+LHTRSLKYGKL +G L+TV PSL++R K+HF NL CGA +ILG NGY+W+S
Sbjct: 130 QVNSDGSLSLHTRSLKYGKLTEGTLVTVSPSLVKRCKNHFHNLLCGASLILGNNGYIWIS 189
Query: 213 AI--DENK-------------SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDT 257
I D+++ S V + +RETI RL N I ALA+S+++L+DT
Sbjct: 190 PIILDDHQQEQMRFQLPSTPGSSSVKTVTHVATIEERETIARLRNCILALAQSRILLYDT 249
Query: 258 SIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTL 294
++QYAY+ SLKY +LLK ++ D+ Q L L
Sbjct: 250 TVQYAYDASLKYEVKELLKKDAMEDITESVQQNLSAL 286
>gi|405960495|gb|EKC26416.1| Exosome complex exonuclease RRP4 [Crassostrea gigas]
Length = 292
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 139/273 (50%), Positives = 200/273 (73%), Gaps = 4/273 (1%)
Query: 27 EFTDPILTPGETVEYLEGYMTGHGTF-PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
E + ++TPG+ + G+M GHGT+ +D+ + ASV GVVE+VN+L+ V+ + +RY GE
Sbjct: 19 EEIENLVTPGDIITSDSGFMRGHGTYNSEDDRLLASVAGVVERVNKLICVKPLKTRYNGE 78
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
IG+VV+GR+ +Q ++W V+T++ L+S+L L+SVNLPGGE RRRS +DE+MMRE+LKEGD
Sbjct: 79 IGDVVIGRIIEVQQRRWKVETHAKLDSSLLLSSVNLPGGELRRRSEEDEKMMREYLKEGD 138
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGC 205
LISAE+ + +GSL+LHTRSLKYGKLGQG L+ V PSLI+R K+HF +L CGA +ILG
Sbjct: 139 LISAEVQSVFADGSLSLHTRSLKYGKLGQGTLVQVSPSLIKRRKTHFHHLPCGATIILGN 198
Query: 206 NGYVWVSAIDE---NKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYA 262
NGYVW+ + +++GG+ N + V+ SDRE + RL N ++ LA K+ L+DTS+ Y
Sbjct: 199 NGYVWICPTETEEMDQTGGYELNWKPVQRSDREVVARLRNCVQLLAAQKMQLYDTSVLYT 258
Query: 263 YEESLKYSTYDLLKPESKLDLVLCTAQKLQTLG 295
YE SL + D+LKPE L+++ T +L+ G
Sbjct: 259 YEASLNFKIKDILKPEIGLEILEQTQHRLEIEG 291
>gi|324507327|gb|ADY43111.1| Exosome complex exonuclease RRP4 [Ascaris suum]
Length = 297
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/276 (48%), Positives = 190/276 (68%), Gaps = 5/276 (1%)
Query: 22 LIEIHEFTD-PILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS 80
LI+ + D ++ PG V +M GHGT+ EE+ ASV G VE+VN+L++V+ + S
Sbjct: 16 LIDSEKVADEKLVVPGAKVSSALNFMRGHGTYLSGEELIASVAGAVEQVNKLLTVKPIKS 75
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREF 140
RY GEIG+VVVGR+T +Q ++W V+T + L+S L L+SVNLPGGE RR+SV+DE MMRE+
Sbjct: 76 RYNGEIGDVVVGRITEVQQKRWKVETYARLDSTLMLSSVNLPGGELRRKSVEDELMMREY 135
Query: 141 LKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQ 200
LKEGDLISAE+ ++ +G L+LHTR+LKYGKL QG L+ V P L++R KSHF L CGA
Sbjct: 136 LKEGDLISAEVQKVHNDGQLSLHTRNLKYGKLSQGTLVKVSPYLVKRRKSHFHTLPCGAS 195
Query: 201 VILGCNGYVWVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVIKALAESKVMLFD 256
+ILGCNG +W+S + ++ +GG+ QN+ EV+ + R I RL N + LA+ + L+D
Sbjct: 196 IILGCNGNIWISPVASEEQTATGGYAQNLDEVIPMETRAVIARLANCVNVLAKHHIPLYD 255
Query: 257 TSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
T++ A+E S Y DLLKP ++ A +L+
Sbjct: 256 TTVMLAHEASSNYEVKDLLKPAVATEVAAEVADRLE 291
>gi|198417930|ref|XP_002126379.1| PREDICTED: similar to exosome component 2 [Ciona intestinalis]
Length = 302
Score = 273 bits (699), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 139/278 (50%), Positives = 189/278 (67%), Gaps = 8/278 (2%)
Query: 29 TDPILTPGETVEYLEGYMTGHGTF---PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
T ++TPG+ + YM GHGT+ D+++ +SV GVVE++N+L+ VRA+ SRY GE
Sbjct: 22 TSYLVTPGDVITEDTDYMRGHGTYCTGDADDKLYSSVAGVVERINKLICVRALKSRYTGE 81
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
+G++VVGRV +Q ++W ++TNS L+S L L+SVNLPGGE RRRS DE MR +L EGD
Sbjct: 82 VGDIVVGRVKEVQQKRWKIETNSRLDSILQLSSVNLPGGELRRRSATDELNMRSYLNEGD 141
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGC 205
LISAE+ Q++ +G L+LHTRSL+YGKL QG L+ V PSLI+R K+H NL+CGA +IL
Sbjct: 142 LISAEVPQVNVDGILSLHTRSLRYGKLSQGCLVIVSPSLIKRRKNHIHNLSCGASIILAN 201
Query: 206 NGYVWV-----SAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQ 260
NGY+W+ S+ E GGFI + E + + DRE I RL N IK LA+ V+L+DTSI
Sbjct: 202 NGYIWIYTTQHSSQTEEGDGGFIISNESIPIEDREIICRLRNCIKCLAKRSVVLYDTSIL 261
Query: 261 YAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLGLAD 298
YAYE S+ Y LL E ++V T LQ + +
Sbjct: 262 YAYEASMSYKVKQLLDDEVCDEIVNKTIYLLQQANVGN 299
>gi|410979298|ref|XP_003996022.1| PREDICTED: exosome complex component RRP4 isoform 2 [Felis catus]
Length = 285
Score = 273 bits (698), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 132/263 (50%), Positives = 188/263 (71%), Gaps = 11/263 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGK V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQKTHFHDLPCGASVILGTNGFIWI 197
Query: 212 SAI---DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E +GG N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 198 YPTPGHKEEDAGGLTANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 257
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 258 HQIKDILKPEIMEEIVMETRQRL 280
>gi|346470981|gb|AEO35335.1| hypothetical protein [Amblyomma maculatum]
Length = 295
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/272 (50%), Positives = 193/272 (70%), Gaps = 4/272 (1%)
Query: 24 EIHEFTDP--ILTPGETVEYLEGYMTGHGTFPDD--EEIKASVGGVVEKVNQLVSVRAMN 79
E+ E T P ++ PG+ + +M GHGT+ D E++ +SV GV+EKVN+L++VR +
Sbjct: 20 EVCENTRPKGLVAPGDVITSDLSFMRGHGTYVDSSSEQLLSSVAGVIEKVNKLITVRPLK 79
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY GEIG+VV+GR+ +Q ++W V+ S L ++L L+SVNLPGGE RR+S +DE +MR+
Sbjct: 80 TRYNGEIGDVVIGRIVEVQQRRWKVEMASRLNASLLLSSVNLPGGELRRKSAEDELLMRQ 139
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA 199
+L EGDLISAE+ I ++GSL+LHTRSLKYGKLGQG L+ V PSLI+R K HF +L CG
Sbjct: 140 YLCEGDLISAEVQSIFSDGSLSLHTRSLKYGKLGQGTLVLVSPSLIKRCKIHFHSLPCGV 199
Query: 200 QVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSI 259
QVILG NGYVWV + + F+Q++++V RE+I+R+ N I ALA V+LF+TSI
Sbjct: 200 QVILGNNGYVWVCPLPSEEGTKFVQSVDMVPEVTRESISRVRNCIVALAHHHVVLFNTSI 259
Query: 260 QYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
YAY+ SL++ L KPE ++ T QKL
Sbjct: 260 VYAYDISLEHKVNALTKPEVMKEVADLTKQKL 291
>gi|312065758|ref|XP_003135945.1| Rrp4-PA [Loa loa]
gi|307768889|gb|EFO28123.1| Rrp4-PA [Loa loa]
Length = 295
Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 131/267 (49%), Positives = 185/267 (69%), Gaps = 4/267 (1%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
+ ++ PG V +M GHGT+ ++ ASV G VE+VN+LVSVR + SRY GEIG+V
Sbjct: 26 NKLIVPGAKVTSNPDFMRGHGTYMRGNDLIASVAGTVEQVNKLVSVRPLKSRYNGEIGDV 85
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GR+T +Q ++W V+TNS L S L L+SVNLPGGE RR+SV+DE MMRE+LKEGDLISA
Sbjct: 86 VIGRITEVQQKRWKVETNSRLNSTLLLSSVNLPGGELRRKSVEDERMMREYLKEGDLISA 145
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ ++ ++G L LHTR+L+YGKL QG L+ + P L++R KSHF L CG VI G NGY+
Sbjct: 146 EVQKVHSDGQLLLHTRNLRYGKLSQGTLIKISPYLVKRRKSHFHTLPCGVSVIFGRNGYI 205
Query: 210 WVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
W++ + ++N +GG+ QN+ EVV + R I R+ N + LA + L+DT++ AY+
Sbjct: 206 WIAPVVNEEQNMTGGYSQNLEEVVPMKIRSVIARVANCVNILAMHHIPLYDTTVVLAYDA 265
Query: 266 SLKYSTYDLLKPESKLDLVLCTAQKLQ 292
SL +LLKPES ++ A +L+
Sbjct: 266 SLNSEINELLKPESAANIATEVALQLE 292
>gi|402590946|gb|EJW84876.1| exosome complex exonuclease RRP4 [Wuchereria bancrofti]
Length = 295
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 129/267 (48%), Positives = 186/267 (69%), Gaps = 4/267 (1%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
+ ++ PG V +M GHGT+ D+ + ASV G VE+VN+LVSVR + SRY GEIG+V
Sbjct: 26 NKLIVPGAKVTSNPDFMRGHGTYMRDDNLIASVAGTVEQVNKLVSVRPLKSRYNGEIGDV 85
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GR+T +Q ++W V+TNS L S L L+SVNLPGGE RR+SV+DE MMRE+LKEGDLISA
Sbjct: 86 VIGRITEVQQKRWKVETNSRLNSTLLLSSVNLPGGELRRKSVEDERMMREYLKEGDLISA 145
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ ++ ++G L+LHTR+L+YGKL QG L+ + P L++R KSHF L CG VI G NGY+
Sbjct: 146 EVQKVHSDGQLSLHTRNLRYGKLSQGTLVKISPYLVKRRKSHFHTLPCGVSVIFGRNGYI 205
Query: 210 WVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
W++ + ++N +GG+ QN+ E++ + R I R+ N + LA + L+DT++ AY+
Sbjct: 206 WIAPVASEEQNMTGGYSQNLEEIIPMKIRTVIARVANCVNILAMHHIPLYDTTVVLAYDA 265
Query: 266 SLKYSTYDLLKPESKLDLVLCTAQKLQ 292
SL +LLK ES ++ A +L+
Sbjct: 266 SLNCEIKELLKLESSANIATEVALQLE 292
>gi|391334155|ref|XP_003741473.1| PREDICTED: exosome complex component RRP4-like [Metaseiulus
occidentalis]
Length = 297
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/265 (48%), Positives = 187/265 (70%), Gaps = 1/265 (0%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEE-IKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
+++PG T+ G+M GHGT+ +DE + ++V GVVEKVN+L++VR + +RY E+G+VV
Sbjct: 33 VVSPGTTITTDGGFMRGHGTYLEDENGLLSAVAGVVEKVNKLITVRPLKTRYNPEVGDVV 92
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGR+ + + W VD L +ALHL SVNLPGGE RR+S++DE +M ++L +GDL+SAE
Sbjct: 93 VGRIVQVCQKLWKVDVGGRLYAALHLHSVNLPGGELRRKSIEDELLMSQYLIDGDLVSAE 152
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ + +G+++LHTR+LKYGKLGQG L+ V PSL++R K+HF NL G +++G NG++W
Sbjct: 153 VQNVGVDGAVSLHTRNLKYGKLGQGSLVQVSPSLVKRCKTHFHNLPNGVHLVIGLNGFLW 212
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYS 270
++ E +S F QN+E V RE+I R NVI +L+ +ML+DT+I YAYE S YS
Sbjct: 213 ITHEGEAESSHFAQNLERVDYHTRESICRTRNVIISLSRYNIMLYDTTILYAYEISTDYS 272
Query: 271 TYDLLKPESKLDLVLCTAQKLQTLG 295
LLKPE ++++ T QKLQ G
Sbjct: 273 IAQLLKPEIQMEVAHLTRQKLQLEG 297
>gi|170586918|ref|XP_001898226.1| exosome component 2 [Brugia malayi]
gi|158594621|gb|EDP33205.1| exosome component 2, putative [Brugia malayi]
Length = 295
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/267 (48%), Positives = 184/267 (68%), Gaps = 4/267 (1%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
+ ++ PG V +M GHGT+ D+ + ASV G VE+VN+LVSVR + SRY GEIG+V
Sbjct: 26 NKLIVPGAKVTSNPDFMRGHGTYTRDDNLIASVAGTVEQVNKLVSVRPLKSRYNGEIGDV 85
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GR+T +Q ++W V+TNS L S L L+SVNLPGGE RR+SV+DE MMRE+LKEGDLISA
Sbjct: 86 VIGRITEVQQKRWKVETNSRLNSTLLLSSVNLPGGELRRKSVEDERMMREYLKEGDLISA 145
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ ++ ++G L+LHTR+L+YGKL QG L+ + P L++R KSHF L G VI G NGY+
Sbjct: 146 EVQKVHSDGQLSLHTRNLRYGKLSQGTLVKISPYLVKRRKSHFHTLPYGVSVIFGRNGYI 205
Query: 210 WVSAI---DENKSGGFIQNM-EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
W++ + ++N +GG+ QN+ EV+ + R I R+ N + LA + L+DT++ AY+
Sbjct: 206 WIAPVASEEQNMTGGYSQNLEEVIPMKIRTVIARVANCVNILAMHHIPLYDTTVVLAYDA 265
Query: 266 SLKYSTYDLLKPESKLDLVLCTAQKLQ 292
SL DLLK E ++ A +L+
Sbjct: 266 SLNSEIKDLLKLEPSTNIATEVALQLE 292
>gi|221108713|ref|XP_002163222.1| PREDICTED: exosome complex component RRP4-like [Hydra
magnipapillata]
Length = 291
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 183/263 (69%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDD-EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
+ PGE + G+M GHGT+ D+ + ASV GVVE+VN+L+SV+ +RY GE+G+V+
Sbjct: 25 FVVPGEVITDDAGFMKGHGTYADNANRLAASVVGVVERVNKLISVKPFKTRYNGEVGDVI 84
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGR+T + ++W VDTN+ L S L L++VNLPGGE RRRS +DE +MRE+L EGDL+ AE
Sbjct: 85 VGRITEVNQKRWRVDTNARLNSVLLLSAVNLPGGELRRRSTKDELLMREYLIEGDLVVAE 144
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ I +GSL+LHTR+LKYGKL QG +L V PSL++R K+H +L CGA +ILG NGY+W
Sbjct: 145 VQSIFADGSLSLHTRNLKYGKLPQGTILKVSPSLVKRCKTHMHSLPCGATLILGNNGYIW 204
Query: 211 VSAIDENKSGGFIQNME--VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+ + +S ++ + ++ SDRE I RL N I LA V L+DTS+ Y YEES K
Sbjct: 205 IGPLMSAESDLSSRSAQRITIQRSDREVIARLRNCITILASYGVQLYDTSVNYIYEESFK 264
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
YS +LL+ E++ D+V +KL
Sbjct: 265 YSVKELLQLENQEDIVDAARRKL 287
>gi|426363336|ref|XP_004048797.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP4
[Gorilla gorilla gorilla]
Length = 300
Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 135/271 (49%), Positives = 191/271 (70%), Gaps = 12/271 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVG-GVVEKVNQLVSVRA-------MNSRYI 83
++ PG+T+ G+M +G + E + AS G VE V++LV + ++ RYI
Sbjct: 26 LVVPGDTITTDTGFMR-YGPYSXSEVMVASPKVGAVEDVSRLVCLLTDGXTPCVLSFRYI 84
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
GE+G++VVGR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+E
Sbjct: 85 GEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQE 144
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVIL 203
GDLISAE+ + ++G+++LHTRSLKYGKLGQG+L+ V PSL+RR K+H +L CGA VIL
Sbjct: 145 GDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVRRQKTHLHDLPCGASVIL 204
Query: 204 GCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQ 260
G NG++W+ E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI
Sbjct: 205 GNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSIL 264
Query: 261 YAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
Y YE SL + D+LKPE ++V+ T Q+L
Sbjct: 265 YCYEASLPHQIKDILKPEIMEEIVMETRQRL 295
>gi|390458444|ref|XP_002743447.2| PREDICTED: exosome complex component RRP4 isoform 2 [Callithrix
jacchus]
Length = 270
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/263 (48%), Positives = 179/263 (68%), Gaps = 26/263 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLIS
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLIS--- 142
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
LGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 143 --------------------LGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 182
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 183 YPTPEHKEEEAGGFAANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 242
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 243 HQIKDILKPEIMEEIVMETRQRL 265
>gi|297685560|ref|XP_002820353.1| PREDICTED: exosome complex component RRP4 isoform 2 [Pongo abelii]
Length = 267
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/263 (47%), Positives = 178/263 (67%), Gaps = 29/263 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR+FL+EGDLIS
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDFLQEGDLIS--- 142
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
G+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 143 -----------------------GVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 179
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 180 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLP 239
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 240 HQIKDILKPEIMEEIVMETRQRL 262
>gi|119608348|gb|EAW87942.1| exosome component 2, isoform CRA_b [Homo sapiens]
Length = 263
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/263 (47%), Positives = 177/263 (67%), Gaps = 33/263 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRIT------------------------------ERRRSAEDELAMRGFLQEGDLISAEV 115
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 116 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 175
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 176 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLP 235
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 236 HQIKDILKPEIMEEIVMETRQRL 258
>gi|340711590|ref|XP_003394358.1| PREDICTED: hypothetical protein LOC100650841 [Bombus terrestris]
Length = 586
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 171/236 (72%), Gaps = 5/236 (2%)
Query: 10 IEIMLASDRIDPLIEIHEFTDP-ILTPGETVEYLEGYMTGHGTFPDDEE-IKASVGGVVE 67
I + LA +R+D I +E P I TPGE + ++ GHGT+ DDE ++ASV GV+E
Sbjct: 8 INVRLAVNRVDLNIIKNEDVQPRIYTPGEEISSQPDFLRGHGTYVDDENTLRASVAGVLE 67
Query: 68 KVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQR 127
KVN+L+S+R + +RY GEIG+VVVGR+T +Q ++W VDTNS L+S L L+SVNLPGGE R
Sbjct: 68 KVNKLISIRPLKARYQGEIGDVVVGRITEVQQRRWKVDTNSKLDSVLLLSSVNLPGGELR 127
Query: 128 RRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR 187
RRS +DE+ MR +L+EGDLI AE+ +GSL+LHTR LKYGKL QGI+L V P+LI+R
Sbjct: 128 RRSAEDEQTMRRYLQEGDLICAEVQSTFVDGSLSLHTRVLKYGKLSQGIMLKVSPALIKR 187
Query: 188 SKSHFCNLACGAQVILGCNGYVWVSAI--DENKS-GGFIQNMEVVKLSDRETITRL 240
K+HF NLA GA +ILG NGY+W+ A D ++S GGF Q++ + ++RE RL
Sbjct: 188 KKTHFHNLANGASLILGNNGYIWIGASKKDTDRSEGGFTQDLSRIPQANREVCARL 243
>gi|514266|gb|AAB60392.1| unknown [Homo sapiens]
Length = 261
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/263 (47%), Positives = 177/263 (67%), Gaps = 33/263 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 24 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 83
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +RRRS +DE MR FL+EGDLISAE+
Sbjct: 84 GRIT------------------------------ERRRSAEDELAMRGFLQEGDLISAEV 113
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 114 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 173
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 174 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLP 233
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 234 HQIKDILKPEIMEEIVMETRQRL 256
>gi|114627220|ref|XP_001165883.1| PREDICTED: uncharacterized protein LOC464801 isoform 1 [Pan
troglodytes]
gi|332255332|ref|XP_003276786.1| PREDICTED: exosome complex component RRP4 isoform 2 [Nomascus
leucogenys]
gi|397503634|ref|XP_003822424.1| PREDICTED: exosome complex component RRP4 [Pan paniscus]
gi|194383720|dbj|BAG59218.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/263 (47%), Positives = 177/263 (67%), Gaps = 29/263 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLIS
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLIS--- 142
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
G+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 143 -----------------------GVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 179
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 180 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLP 239
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 240 HQIKDILKPEIMEEIVMETRQRL 262
>gi|297270043|ref|XP_002800006.1| PREDICTED: exosome complex exonuclease RRP4 isoform 3 [Macaca
mulatta]
Length = 267
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 125/263 (47%), Positives = 177/263 (67%), Gaps = 29/263 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+TV G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTVTTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLIS
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLIS--- 142
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
G+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 143 -----------------------GVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 179
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N + +L ++ML+DTSI Y YE SL
Sbjct: 180 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCVISLVTQRMMLYDTSILYCYEASLP 239
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 240 HQIKDILKPEIMEEIVMETRQRL 262
>gi|350416193|ref|XP_003490870.1| PREDICTED: hypothetical protein LOC100747413 [Bombus impatiens]
Length = 578
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 127/237 (53%), Positives = 171/237 (72%), Gaps = 5/237 (2%)
Query: 8 PVIEIMLASDRIDPLIEIHEFTDP-ILTPGETVEYLEGYMTGHGTFPDDEE-IKASVGGV 65
P I + LA +R+D I +E P I TPGE + ++ GHGT+ DDE ++ASV GV
Sbjct: 6 PPINVRLAVNRVDLNIIKNEDIQPRIYTPGEEISSQPDFLRGHGTYVDDENTLRASVAGV 65
Query: 66 VEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGE 125
+EKVN+L+S+R + +RY GEIG+VVVGR+T +Q ++W VDTNS L+S L L+SVNLPGGE
Sbjct: 66 LEKVNKLISIRPLKARYQGEIGDVVVGRITEVQQKRWKVDTNSKLDSVLLLSSVNLPGGE 125
Query: 126 QRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI 185
RRRS +DE+ MR +L+EGDLI AE+ +GSL+LHTR LKYGKL QGI+L V P+LI
Sbjct: 126 LRRRSAEDEQTMRRYLQEGDLICAEVQSTFVDGSLSLHTRVLKYGKLSQGIMLKVSPALI 185
Query: 186 RRSKSHFCNLACGAQVILGCNGYVWVSAI--DENKS-GGFIQNMEVVKLSDRETITR 239
+R K+HF NLA GA +ILG NGY+W+ A D ++S GGF Q++ + +RE+ R
Sbjct: 186 KRKKTHFHNLANGASLILGNNGYIWIGASKKDTDRSEGGFTQDLSRIPQVNRESHQR 242
>gi|402896282|ref|XP_003911233.1| PREDICTED: exosome complex component RRP4 isoform 2 [Papio anubis]
Length = 267
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 124/263 (47%), Positives = 177/263 (67%), Gaps = 29/263 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLIS
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLIS--- 142
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
G+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 143 -----------------------GVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 179
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N + +L ++ML+DTSI Y YE SL
Sbjct: 180 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCVISLVTQRMMLYDTSILYCYEASLP 239
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 240 HQIKDILKPEIMEEIVMETRQRL 262
>gi|326436073|gb|EGD81643.1| Rrp4-PA [Salpingoeca sp. ATCC 50818]
Length = 301
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 176/265 (66%), Gaps = 7/265 (2%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + +GYM GHGTF D + ASV GVVE+VN+++SVR + +RY+GEIG+VVV
Sbjct: 36 IVCPGDVITEDQGYMRGHGTFIHDGRLLASVAGVVERVNKVISVRPVRTRYVGEIGDVVV 95
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + ++W+VDT S L S L L+SVNLPGG RR+S DE MR+ L EGDLISAE+
Sbjct: 96 GRIMQVGQRRWLVDTQSRLSSVLKLSSVNLPGGVLRRKSASDELTMRQVLAEGDLISAEV 155
Query: 152 HQISTE-GSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
I E G+L+LHTRSL+YG+LG G+ + VP L+RRSK+HF L CG V+LG NGY+W
Sbjct: 156 QAIFQEDGTLSLHTRSLRYGRLGPGMFMRVPSVLVRRSKNHFHTLPCGVAVVLGNNGYIW 215
Query: 211 VSA-IDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
+ A ++E+ + + ++ R + R+ N I ALA + +FDT+I + Y++S
Sbjct: 216 IGASMEEDTTQAREHDQHIITEETRRRMARVRNAISALAHRMLSIFDTTIIFTYDDSAHL 275
Query: 270 STYDLLKPE-----SKLDLVLCTAQ 289
++L PE ++ +LCT Q
Sbjct: 276 EEKEMLHPEAIATITQRAYLLCTDQ 300
>gi|403256509|ref|XP_003920916.1| PREDICTED: exosome complex component RRP4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 267
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/263 (46%), Positives = 176/263 (66%), Gaps = 29/263 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ +M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTAFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLIS
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLIS--- 142
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
G+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 143 -----------------------GVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 179
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF+ N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 180 YPTPEHKEEEAGGFVANLEPVSLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 239
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 240 HQIKDILKPEIMEEIVMETRQRL 262
>gi|383865508|ref|XP_003708215.1| PREDICTED: uncharacterized protein LOC100879942 [Megachile
rotundata]
Length = 585
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 126/236 (53%), Positives = 172/236 (72%), Gaps = 5/236 (2%)
Query: 5 KDKPVIEIMLASDRIDPLIEIHEFTDP-ILTPGETVEYLEGYMTGHGTFPDDEE-IKASV 62
++K +I I LA +RID + +E T P I TPGE + ++ GHGT+ DDE ++ASV
Sbjct: 2 EEKSLINIRLAVNRIDLNLIKNEDTQPRIYTPGEEISSQPDFLRGHGTYVDDENTLRASV 61
Query: 63 GGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLP 122
GV+EKVN+L+S++ + +RY GEIG+V+VGR+T +Q ++W VDTNS L+S L L+SVNLP
Sbjct: 62 AGVLEKVNKLISIKPLKARYQGEIGDVIVGRITEVQQKRWKVDTNSKLDSVLLLSSVNLP 121
Query: 123 GGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPP 182
GGE RRRS +DE+ MR +L+EGDLI AE+ +GSL+LHTR LKYGKL QGI+L V P
Sbjct: 122 GGELRRRSAEDEQTMRRYLQEGDLICAEVQSTFIDGSLSLHTRVLKYGKLSQGIMLKVSP 181
Query: 183 SLIRRSKSHFCNLACGAQVILGCNGYVWVSAI--DENKS-GGFIQNMEVVKLSDRE 235
+LI+R K+HF NL GA +ILG NGYVW+ A D ++S GGF Q++ + + RE
Sbjct: 182 ALIKRKKTHFHNLENGASLILGNNGYVWIGASKQDTDRSEGGFAQDLSRIPQTIRE 237
>gi|195999020|ref|XP_002109378.1| hypothetical protein TRIADDRAFT_21452 [Trichoplax adhaerens]
gi|190587502|gb|EDV27544.1| hypothetical protein TRIADDRAFT_21452 [Trichoplax adhaerens]
Length = 236
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/222 (54%), Positives = 160/222 (72%), Gaps = 1/222 (0%)
Query: 48 GHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTN 107
GHGT+ D ++KASV G VEKV +L+ V+ + SRY GE+G+VVVG +T + ++W VDT
Sbjct: 9 GHGTYLQDNKLKASVAGFVEKVGKLICVKPVKSRYNGEVGDVVVGIITEVGQRRWKVDTY 68
Query: 108 SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSL 167
S L+S L L++VNLPGGE RRRS +DE MMR+ L EGDLISAE+ + +GSL LHTRSL
Sbjct: 69 SRLDSLLMLSAVNLPGGELRRRSEKDELMMRQHLTEGDLISAEVQSVHGDGSLALHTRSL 128
Query: 168 KYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNME 227
KYGKL QG L+TV P+LI+R K+HF NL CGA +ILG NGY+W+S + + + +
Sbjct: 129 KYGKLIQGTLVTVAPALIKRCKTHFHNLECGASIILGNNGYIWISPLLKEDAENQTTKSD 188
Query: 228 VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
L +RE + RL N I ALAE +++L+DTSI Y YE SL Y
Sbjct: 189 TSTL-EREIVARLRNCIMALAERQMLLYDTSITYTYEASLNY 229
>gi|307183363|gb|EFN70221.1| Exosome complex exonuclease RRP4 [Camponotus floridanus]
Length = 582
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 170/235 (72%), Gaps = 5/235 (2%)
Query: 8 PVIEIMLASDRIDPLIEIHEFTDPIL-TPGETVEYLEGYMTGHGTFPDDEE-IKASVGGV 65
P IE+ LA +R+D + +E P L TPGE + ++ GHGT+ D+E+ ++ASV GV
Sbjct: 5 PPIEVRLAVNRVDFNLITNEGIQPRLYTPGEEISSQPDFLRGHGTYVDEEKTLRASVAGV 64
Query: 66 VEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGE 125
+EKVN+L+S+R + +RY GEIG+++VGR+T +Q ++W VD NS L++ L L+SVNLPGGE
Sbjct: 65 LEKVNKLISIRPLKARYNGEIGDLIVGRITEVQQKRWKVDVNSKLDAVLLLSSVNLPGGE 124
Query: 126 QRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI 185
RRRS +DE+ MR +L+EGDLI AE+ I + SL+LHTR LKYGKL QGI+L VPP LI
Sbjct: 125 LRRRSAEDEQTMRRYLQEGDLICAEVQSIFADSSLSLHTRVLKYGKLSQGIMLKVPPMLI 184
Query: 186 RRSKSHFCNLACGAQVILGCNGYVWVSAIDEN---KSGGFIQNMEVVKLSDRETI 237
+R K+H+ NL GA +ILG NGYVW+ A +N GGF +++ + L +RE++
Sbjct: 185 QRKKTHYHNLENGATLILGYNGYVWIGANIQNVDKSEGGFTEDLSRIPLENRESL 239
>gi|353235884|emb|CCA67890.1| related to RRP4-3`-5` exoribonuclease [Piriformospora indica DSM
11827]
Length = 311
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 160/243 (65%), Gaps = 10/243 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+T+ + +M GHGTF D +E+ A+V G +++VN+L+SV+ + SRY+ EIG++VV
Sbjct: 41 IVAPGQTITSVTEFMRGHGTFADGDEVAATVAGTLQRVNKLLSVKPIRSRYVPEIGDLVV 100
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
R+ +Q ++W VD N ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 101 ARIVEVQPKRWKVDANGRQDAVLMLSSVNLPGGIQRRKLESDELQMRAFFEEGDLLVAEV 160
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+G+++LHTRSL+YGKL G L+TVPP LI+R KSHFC L CG VILG NGYVWV
Sbjct: 161 QAFFMDGAMSLHTRSLRYGKLRNGQLVTVPPILIKRLKSHFCALTCGVDVILGVNGYVWV 220
Query: 212 SA-IDENKSGG---------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQY 261
+ EN+ G + + + S R I R+ NV+K LA+ V + D +I +
Sbjct: 221 CKHVKENEQVGEDGFNAESVYSNKNDYIDTSTRLAIIRVTNVVKVLAQYYVSITDVTINH 280
Query: 262 AYE 264
AY+
Sbjct: 281 AYD 283
>gi|389740932|gb|EIM82122.1| hypothetical protein STEHIDRAFT_65970 [Stereum hirsutum FP-91666
SS1]
Length = 286
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 169/259 (65%), Gaps = 12/259 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ PGE + + +M GHGT+ DD+++ ASV G VE+VN+LV+VRA+ +RY E+G++VV
Sbjct: 16 VTAPGEPITSSQAFMRGHGTYVDDDDVIASVAGTVERVNKLVTVRALRTRYNPEVGDLVV 75
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W VDTNS ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 76 GRITEVQPRRWRVDTNSRQDAILMLSSVNLPGGVQRRKLESDELQMRNFFEEGDLLVAEV 135
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
++G+++LHTRSLKYGKL G L+TVPP L+RR KSHF L CG +ILG NGY+WV
Sbjct: 136 QAFFSDGAMSLHTRSLKYGKLRNGQLVTVPPILVRRLKSHFMPLPCGVDLILGLNGYIWV 195
Query: 212 SA-IDENKSGG---------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQY 261
S + E++ G + + + + R I+R+ N+I LA V L D +
Sbjct: 196 SKHVKESEQEGEEGFDSEAVYSNRNDNIDDATRTAISRVANIIHVLASHSVPLTDIVLLE 255
Query: 262 AYEESLK--YSTYDLLKPE 278
AYE +++ DLL+ E
Sbjct: 256 AYEWAVEQDLEVKDLLQLE 274
>gi|402216788|gb|EJT96871.1| exosome complex exonuclease rrp4 [Dacryopinax sp. DJM-731 SS1]
Length = 273
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 172/265 (64%), Gaps = 12/265 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ +PGE + +M GHGTF +D + AS+ G +E+VN+LVSVRA+ +RY GE+G++VV
Sbjct: 2 LTSPGEVITSAMEFMRGHGTFVEDGSVVASLSGTIERVNKLVSVRALQTRYHGEVGDLVV 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q+ +W VD NS ++ L L+SVNLPGG QRR+ DE MR+F +EGDL+ AE+
Sbjct: 62 GRITEVQAARWKVDVNSHQDAILRLSSVNLPGGVQRRKLESDELEMRKFFEEGDLLVAEV 121
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +G L+LHTRSLKYGKL G L++V P LIRR +HFC L CG +ILG NGY+W+
Sbjct: 122 QPMHGDGVLSLHTRSLKYGKLRNGQLISVSPVLIRRRSTHFCTLPCGVDLILGMNGYIWI 181
Query: 212 SA-IDENKSGG---------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQY 261
+ + EN+ G + + + L R I+R++N+I A V L DT +
Sbjct: 182 AKHVAENEREGEEGFDAEAVYSNKNDDIDLETRAAISRVSNLISIFARHSVPLTDTILAK 241
Query: 262 AYEESLK--YSTYDLLKPESKLDLV 284
AY+ +++ S DLL+ E+ ++V
Sbjct: 242 AYDWAVQQELSPKDLLRTETGDNMV 266
>gi|393236149|gb|EJD43699.1| hypothetical protein AURDEDRAFT_88525 [Auricularia delicata
TFB-10046 SS5]
Length = 309
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 163/246 (66%), Gaps = 10/246 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ +PGE + + +M GHGTF D E++ ASV G +E+VN+LVSVRA+ SRY E+G++V+
Sbjct: 36 LTSPGEPITSSQAFMRGHGTFVDGEDVIASVPGTIERVNKLVSVRALRSRYNPEVGDLVI 95
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + ++W VD N+ ++ L L S+NLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 96 GRITEVGPRRWKVDANARQDAVLMLASINLPGGVQRRKLESDELQMRSFFEEGDLLVAEV 155
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+G+++LHTRSLKYGKL G L+TVPP L+RR KSHF L CG +ILG NG VWV
Sbjct: 156 QAFFADGAMSLHTRSLKYGKLRNGQLVTVPPVLVRRLKSHFIALPCGVDLILGLNGRVWV 215
Query: 212 SA---IDENKSGG-------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQY 261
S +EN++ + + + +S RE I+R+ N+I+ALA+ + L D +
Sbjct: 216 SKHIHREENEADDTFDAELVYSNQNDDIDISTREAISRVTNIIRALADRFIPLTDALLVD 275
Query: 262 AYEESL 267
AYE +L
Sbjct: 276 AYEWAL 281
>gi|395333568|gb|EJF65945.1| exosome complex exonuclease rrp4 [Dichomitus squalens LYAD-421 SS1]
Length = 319
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 177/273 (64%), Gaps = 12/273 (4%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ PGE++ +M GHGT+ D++E+ ASV G VE+VN+L++VRA+ SRY E+G++VV
Sbjct: 46 LTVPGESITSSHAFMRGHGTYVDNDEVIASVAGTVERVNKLITVRAVRSRYNPEVGDLVV 105
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W VD NS ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 106 GRITEVQPRRWKVDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEV 165
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
++G+++LHTRSL+YGKL G L+TVPP LIRR KSHF +L CG +ILG NGY+WV
Sbjct: 166 QAFFSDGAMSLHTRSLRYGKLRNGQLVTVPPILIRRLKSHFVSLPCGVDLILGLNGYIWV 225
Query: 212 SA-IDENKSGG---------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQY 261
S + +++ G + + + + R I+R++N+IK LA V L D+ +
Sbjct: 226 SKHVKQSEQEGEEGFDAEAVYSNKNDDIDEATRAAISRVSNIIKILAAHFVPLTDSVLLE 285
Query: 262 AYEESLKY--STYDLLKPESKLDLVLCTAQKLQ 292
AYE +++ S DLL + +LV L+
Sbjct: 286 AYEWAVEQESSVKDLLLDDVGENLVASLGSGLR 318
>gi|449543038|gb|EMD34015.1| hypothetical protein CERSUDRAFT_86778 [Ceriporiopsis subvermispora
B]
Length = 288
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 163/251 (64%), Gaps = 10/251 (3%)
Query: 24 EIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
+ + T ++ PGE + +M GHGT+ D EE+ ASV G VE+VN+LV+VRA+ +RY
Sbjct: 9 DFEDTTRKLIVPGEPLTSSHAFMRGHGTYVDGEEVVASVAGTVERVNKLVTVRAIRTRYS 68
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
E+G++VVGR+T +Q ++W VD NS ++ L L+SVNLPGG QRR+ DE MR F +E
Sbjct: 69 PEVGDLVVGRITEVQPRRWKVDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEE 128
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVIL 203
GDL+ AE+ ++G+++LHTRSLKYGKL G L+TVPP LI+R KSHF L CG VIL
Sbjct: 129 GDLLVAEVQAFFSDGAMSLHTRSLKYGKLRNGQLVTVPPILIKRLKSHFLALPCGVDVIL 188
Query: 204 GCNGYVWVS-----AIDENKSGGFIQNMEVVKLSD-----RETITRLNNVIKALAESKVM 253
G NGY+WVS + E + G Q + K D R I+R+ N+I+ LA V
Sbjct: 189 GLNGYIWVSKHVKQSQQEGEEGFDAQAVYSNKNDDIDDATRAAISRVCNIIRILAAQFVP 248
Query: 254 LFDTSIQYAYE 264
L D ++ AY+
Sbjct: 249 LTDVTLLEAYD 259
>gi|392566801|gb|EIW59976.1| exosome complex exonuclease rrp4 [Trametes versicolor FP-101664
SS1]
Length = 288
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 159/251 (63%), Gaps = 10/251 (3%)
Query: 24 EIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
+ E + PGE + +M GHGTF D EE+ ASV G VE+VN+L++VR++ SRY
Sbjct: 7 DFEENVQRLTVPGEPITSSHAFMRGHGTFVDSEEVIASVAGTVERVNKLITVRSVRSRYN 66
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
E+G++VVGR+T +Q ++W VD NS ++ L L+SVNLPGG QRR+ DE MR F +E
Sbjct: 67 PEVGDLVVGRITEVQPRRWKVDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEE 126
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVIL 203
GDL+ AE+ +G+++LHTRSL+YGKL G L+ VPP LIRR KSHF L CG +IL
Sbjct: 127 GDLLVAEVQAFFADGAMSLHTRSLRYGKLRNGQLVAVPPILIRRLKSHFVTLPCGVDLIL 186
Query: 204 GCNGYVWVS----AIDENKSGGF------IQNMEVVKLSDRETITRLNNVIKALAESKVM 253
G NGY+WVS A ++ GF + + + R I+R++N+I+ L V
Sbjct: 187 GLNGYIWVSKHVKASEQEGEEGFDAEAVYSNRNDTIDDATRVAISRVSNIIRVLTAHFVP 246
Query: 254 LFDTSIQYAYE 264
L DT + AYE
Sbjct: 247 LSDTILLEAYE 257
>gi|336366748|gb|EGN95094.1| hypothetical protein SERLA73DRAFT_187395 [Serpula lacrymans var.
lacrymans S7.3]
Length = 312
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 173/267 (64%), Gaps = 11/267 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PGE + + +M GHGT+ D +E+ ASV G +E+VN+LV+VRA+ SRY E+G++VVGR+
Sbjct: 45 PGEFITSSQTFMRGHGTYVDQDEVIASVAGTIERVNKLVTVRAIRSRYNPEVGDLVVGRI 104
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
T +Q ++W VD +S ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 105 TEVQPRRWKVDAHSRQDAILMLSSVNLPGGVQRRKLESDELQMRNFFEEGDLLVAEVQAF 164
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA- 213
++G+++LHTRSLKYGKL G L+ VPP L+RR KSHF +L CG +ILG NGY+WVS
Sbjct: 165 FSDGAMSLHTRSLKYGKLRNGQLIIVPPILVRRLKSHFISLPCGVDLILGLNGYIWVSKH 224
Query: 214 ---IDENKSGGFIQNMEVVKLSD-----RETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
ID+ + G + + K D R I+R++N+I+ LA+ V L D + AYE
Sbjct: 225 VKDIDQGEQGLDAEAVYSNKNDDIDDATRMAISRVSNIIRVLADYFVPLTDMLLLEAYEW 284
Query: 266 SLKY--STYDLLKPESKLDLVLCTAQK 290
++ T D+L+ + LV + +
Sbjct: 285 VIEQEGDTKDILQEDMSDALVAAISAR 311
>gi|167521940|ref|XP_001745308.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776266|gb|EDQ89886.1| predicted protein [Monosiga brevicollis MX1]
Length = 268
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/251 (49%), Positives = 167/251 (66%), Gaps = 5/251 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG T+ G+M GHGTF +DE + ASV GVVE VN++VSVR +RY+GE+G+VVV
Sbjct: 2 IVVPGATITSETGFMRGHGTFLEDEVLYASVAGVVEHVNKVVSVRPARTRYVGEVGDVVV 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + ++W VD S L L L+SVNLPGG RR+S DE MMREF KEGDLISAE+
Sbjct: 62 GRIVEVSQRRWKVDIQSRLHGVLKLSSVNLPGGVLRRKSASDELMMREFFKEGDLISAEV 121
Query: 152 HQISTE-GSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
QI E G+L+LHTRSL+YG+LG G + V P+LIRRSK H L CG V+LG NG++W
Sbjct: 122 QQIYQEDGTLSLHTRSLRYGRLGGGAFVAVSPALIRRSKHHMHVLPCGVAVVLGTNGFIW 181
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRET---ITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
+ E + + + + DR+ I R+ N I+ALA +F+TSI Y YE+S
Sbjct: 182 IGPRLEEDTTRRDASADAMG-PDRDMRLRIARVRNCIEALATRHCPIFETSIVYTYEDSQ 240
Query: 268 KYSTYDLLKPE 278
++ DLL+P+
Sbjct: 241 EHHVKDLLQPD 251
>gi|170104928|ref|XP_001883677.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641312|gb|EDR05573.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 287
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 162/243 (66%), Gaps = 13/243 (5%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYI---GEIGEVVV 91
PGE + + YM GHGT+ D+EE+ ASV G +E+VN+LV+VRA++SR++ E+G++VV
Sbjct: 45 PGELLTSSQAYMRGHGTYVDNEEVIASVAGTIERVNKLVTVRAISSRHVLYNPEVGDLVV 104
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W VD NS ++ L L+S+NLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 105 GRITEVQPRRWKVDANSRQDAVLMLSSINLPGGVQRRKLESDELQMRTFFEEGDLLVAEV 164
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
++G+++LHTRSLKYGKL G L+TV P L+RR KSHF L CG +ILG NGY+WV
Sbjct: 165 QAFFSDGAMSLHTRSLKYGKLRNGQLVTVSPILVRRLKSHFLTLPCGVDLILGLNGYIWV 224
Query: 212 SA-IDENKSGG---------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQY 261
S + E++ G + + + S R I+R+ N+I+ LA + L DT +
Sbjct: 225 SKHVKESEQEGEEGFDAEAVYSNQNDEIDASTRTAISRVTNIIRVLASHFLPLTDTLLLQ 284
Query: 262 AYE 264
AYE
Sbjct: 285 AYE 287
>gi|390600048|gb|EIN09443.1| exosome complex exonuclease rrp4 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 285
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 169/268 (63%), Gaps = 12/268 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PG+++ + +M GHGT+ +E+ ASV G VE+VN+L++VRA+ SRY E+G++V+GR+
Sbjct: 17 PGDSLTSTQAFMRGHGTYVAQDEVIASVAGPVERVNRLITVRALRSRYNPEVGDLVIGRI 76
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
T +Q ++W VD NS ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 77 TDVQPKRWKVDANSRQDAVLMLSSVNLPGGIQRRKVESDELQMRSFFEEGDLLVAEVQAF 136
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVS-- 212
++G+++LHTRSL+YGKL G L+++PP L+RR KS F L CG +ILG NGY+WVS
Sbjct: 137 FSDGAMSLHTRSLRYGKLRNGQLVSIPPILVRRLKSQFLTLPCGVDLILGLNGYIWVSKH 196
Query: 213 --AIDENKSGGFIQNMEVVKLSD------RETITRLNNVIKALAESKVMLFDTSIQYAYE 264
A D+ GF +D R I+R+ N+I L + L DT + AYE
Sbjct: 197 IKANDQEGEEGFDAQAVYSNQNDHIDQATRLAISRVTNIIHILVAHFIPLTDTILLEAYE 256
Query: 265 ESLKY--STYDLLKPESKLDLVLCTAQK 290
+L+ S DLL+ + LV T+ +
Sbjct: 257 WALEQVGSARDLLQDDIGESLVAATSSR 284
>gi|313216916|emb|CBY38128.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 158/246 (64%), Gaps = 11/246 (4%)
Query: 33 LTPGETVEYLEGYMTGHGTF-PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ PG+ + +M GHGT+ E++ASV G VE++N+L++VR RY GE+G++VV
Sbjct: 27 VNPGDVITENTDFMRGHGTYQASSNELRASVAGTVERINKLITVRPAKMRYNGEVGDIVV 86
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ +Q + W VD + L + L+L +VNLPGGE RRR DE +MR+FL+EGDLI AE+
Sbjct: 87 GRIIEVQQKLWKVDCGTRLNAFLNLAAVNLPGGELRRRGADDELVMRKFLQEGDLILAEV 146
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +G L LHTRSLKYGKLG G+L+ V PSLIRR K H NL CG IL NG+V+
Sbjct: 147 QKAREDGHLNLHTRSLKYGKLGPGVLIIVSPSLIRRRKQHIHNLPCGVTAILATNGFVYF 206
Query: 212 SAIDENKSGGFIQNMEVVKLSD---RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+ E +++ +VK D RE I RL V +LA+ +V L+D+S+ Y +E SL
Sbjct: 207 CPLVE-------EDISIVKEVDSATRENICRLRQVTLSLAKHRVSLYDSSLLYGFEASLH 259
Query: 269 YSTYDL 274
+ ++
Sbjct: 260 FPVAEI 265
>gi|328768877|gb|EGF78922.1| hypothetical protein BATDEDRAFT_35582 [Batrachochytrium
dendrobatidis JAM81]
Length = 282
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/252 (46%), Positives = 160/252 (63%), Gaps = 9/252 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPGE + +M GHGTF +++ + ASV GVVE+VN+L+SV+ + +Y GEIG+VVV
Sbjct: 12 MVTPGEIITKDSAFMRGHGTFTEEQALVASVAGVVERVNKLISVKPL--KYNGEIGDVVV 69
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR++ L ++W VD + L L+S+NLPGG RR+S DE MR F EGDL+SAE+
Sbjct: 70 GRISELGPKRWKVDIKGRQHAVLLLSSINLPGGVLRRKSESDELQMRTFFAEGDLLSAEV 129
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+G+ +L TR +KYGKL G L+ VP + I+RSKSHF L CG V+LG NGYVWV
Sbjct: 130 QAFFGDGAASLQTRGIKYGKLRNGSLVIVPSAQIKRSKSHFITLPCGVDVVLGVNGYVWV 189
Query: 212 S---AID---ENKSGGFIQN-MEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYE 264
S +D N+ G N E + ++RE I R+ NVI L + ++SI YA++
Sbjct: 190 SKHIPVDPEWANQPDGLYTNENESISDAEREAIARVCNVITLLGRQNCEVHESSIVYAFD 249
Query: 265 ESLKYSTYDLLK 276
SL Y DLLK
Sbjct: 250 ASLDYPVKDLLK 261
>gi|313233921|emb|CBY10089.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 158/246 (64%), Gaps = 11/246 (4%)
Query: 33 LTPGETVEYLEGYMTGHGTF-PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ PG+ + +M GHGT+ E++ASV G VE++N+L++VR RY GE+G++VV
Sbjct: 27 VNPGDVITENTDFMRGHGTYQASSNELRASVAGTVERINKLITVRPAKMRYNGEVGDIVV 86
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ +Q + W VD + L + L+L +VNLPGGE RRR DE +MR+FL+EGDLI AE+
Sbjct: 87 GRIIEVQQKLWKVDCGTRLNAFLNLAAVNLPGGELRRRGADDELVMRKFLQEGDLILAEV 146
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +G L LHTRSLKYGKLG G+L+ V PSLIRR K H NL CG IL NG+V+
Sbjct: 147 QKAREDGHLNLHTRSLKYGKLGPGVLIIVSPSLIRRRKQHIHNLPCGVTAILAINGFVYF 206
Query: 212 SAIDENKSGGFIQNMEVVKLSD---RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+ E +++ +VK D RE I RL V +LA+ +V L+D+S+ Y +E SL
Sbjct: 207 CPLVE-------EDISIVKEVDSATRENICRLRQVTLSLAKHRVSLYDSSLLYGFEASLH 259
Query: 269 YSTYDL 274
+ ++
Sbjct: 260 FPVAEI 265
>gi|409081649|gb|EKM82008.1| hypothetical protein AGABI1DRAFT_112186, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426196882|gb|EKV46810.1| hypothetical protein AGABI2DRAFT_193430, partial [Agaricus bisporus
var. bisporus H97]
Length = 305
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 161/239 (67%), Gaps = 9/239 (3%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PGE++ + +M GHGT+ +DEE+ ASV G +E+VN+LV+VRA+ SRY E+G++VVGR+
Sbjct: 48 PGESLTSSQAFMRGHGTYVNDEEVIASVTGTIERVNKLVTVRAIRSRYNPEVGDLVVGRI 107
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
T +Q ++W VD NS ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 108 TEVQPRRWKVDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRSFFEEGDLLVAEVQAF 167
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA- 213
+G+++LHTRSL+YGKL G L+ VPP L+RR KSHF +L CG +IL NGY+W+S
Sbjct: 168 FADGAMSLHTRSLRYGKLRNGQLVAVPPILVRRLKSHFISLPCGVDLILALNGYIWISKH 227
Query: 214 IDEN-------KSGGFIQNM-EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYE 264
+ +N + G N+ + + + R I+R+ N+++ LA + L DT + AY+
Sbjct: 228 VKQNYQEGEGFDAEGVYSNINDEIDEATRTAISRVTNIVRLLASHFIPLTDTILVEAYD 286
>gi|409045039|gb|EKM54520.1| hypothetical protein PHACADRAFT_258426 [Phanerochaete carnosa
HHB-10118-sp]
Length = 288
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 165/256 (64%), Gaps = 12/256 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PGET+ +M GHGT+ D++E+ ASV G VE+VN+L+SVRA +RY E+G++VVGR+
Sbjct: 20 PGETLTSSHAFMRGHGTYVDNDEVVASVAGTVERVNKLISVRAARTRYNPEVGDLVVGRI 79
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
T +Q ++W VD S ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 80 TEVQPRRWKVDAGSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQAF 139
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA- 213
+G+++LHTRSL+YGKL G L+ VPP+LIRR KSHF +L CG +ILG NGY+WVS
Sbjct: 140 FADGAMSLHTRSLRYGKLRNGQLVVVPPALIRRLKSHFTSLPCGVDLILGLNGYIWVSKH 199
Query: 214 IDENKSGG---------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYE 264
+ E++ G + + + + R I R++N+I+ A L D + AYE
Sbjct: 200 VKESEQEGEEGFDAEAVYSNCNDDIDDATRTAIARVSNIIRVFAAHFHPLTDAVLLEAYE 259
Query: 265 ESLKY--STYDLLKPE 278
+++ S DLL+ +
Sbjct: 260 WAVEQECSVKDLLQED 275
>gi|169865500|ref|XP_001839349.1| exosome complex exonuclease rrp4 [Coprinopsis cinerea okayama7#130]
gi|116499570|gb|EAU82465.1| exosome complex exonuclease rrp4 [Coprinopsis cinerea okayama7#130]
Length = 314
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 158/245 (64%), Gaps = 12/245 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PGET+ YM GHGT+ ++EE+ ASV G +E+VN+LV+VR N RY E+G++VVGR+
Sbjct: 45 PGETLTSSHEYMRGHGTYVENEEVIASVTGTIERVNRLVTVRPANCRYNPEVGDLVVGRI 104
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
T +Q ++W VD NS ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 105 TEVQPRRWKVDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQSF 164
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA- 213
+G+++LHTRSLKYGKL G L+ VP LIRR KSHF L C +ILG NGY+WVS
Sbjct: 165 FADGAMSLHTRSLKYGKLRNGQLVCVPSVLIRRLKSHFLTLPCNVDIILGLNGYIWVSKH 224
Query: 214 IDENKSGGFI----------QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAY 263
I E++ G + QN E + + RE I R++N+I LA + L DT + AY
Sbjct: 225 IKESEQEGELGFDAEAVYSNQNDE-IDTATREAIARVSNIILILASHFIPLTDTLLLEAY 283
Query: 264 EESLK 268
+ K
Sbjct: 284 TWTTK 288
>gi|393222177|gb|EJD07661.1| hypothetical protein FOMMEDRAFT_137897 [Fomitiporia mediterranea
MF3/22]
Length = 293
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 114/273 (41%), Positives = 169/273 (61%), Gaps = 14/273 (5%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ +PG + + +M GHGT+ D EE+ AS G VE+VN+L++VR + +RY EIG++VV
Sbjct: 19 LTSPGVPLTSAQTFMRGHGTYVDGEEVVASTAGTVERVNKLITVRPLRARYNPEIGDLVV 78
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W D N+ ++ L L+S+NLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 79 GRITEVAARRWKADANARQDAVLMLSSINLPGGVQRRKLESDELQMRNFFEEGDLLVAEV 138
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+GS++LHTRSLKYGKL G L+ VPP LIRR KSHF +L CG +ILG NGYVWV
Sbjct: 139 QAFFADGSMSLHTRSLKYGKLRNGQLVVVPPILIRRLKSHFISLPCGVDLILGLNGYVWV 198
Query: 212 SA-IDENKSGG---------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDT---- 257
+ E++ G + + + L+ R I R+ N+++ LA V + D
Sbjct: 199 NKHTSEHEREGEEGFDAEAVYSNRNDEIDLTTRTAIARVYNILRVLAIHFVPITDAVLAD 258
Query: 258 SIQYAYEESLKYSTYDLLKPESKLDLVLCTAQK 290
+ ++A E+ L S DLL+ E+ +VL +
Sbjct: 259 AYEWAIEQDLDCSVKDLLREENSEAMVLAITAR 291
>gi|302689775|ref|XP_003034567.1| hypothetical protein SCHCODRAFT_43279 [Schizophyllum commune H4-8]
gi|300108262|gb|EFI99664.1| hypothetical protein SCHCODRAFT_43279, partial [Schizophyllum
commune H4-8]
Length = 258
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 157/239 (65%), Gaps = 10/239 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PGET+ + +M GHGT+ D E++ ASV G +E+VN+LV+VR + +RY E+G++VVGRV
Sbjct: 20 PGETLTSTQEFMRGHGTYVDGEQVIASVAGAIERVNKLVTVRPVRTRYNPEVGDLVVGRV 79
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
T +Q ++W VD NS ++AL L SVNLPGG QRR+ DE MR F +EGDL+ AE+ I
Sbjct: 80 TEVQPRRWKVDANSRQDAALMLASVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQAI 139
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVS-- 212
+GS++LHTRSL+YGKL G L+TVPP L++R KSHF L C +ILG NGY+WVS
Sbjct: 140 MGDGSMSLHTRSLRYGKLRNGQLVTVPPILVKRLKSHFITLPCDVDLILGLNGYIWVSKH 199
Query: 213 --AIDENKSGGF------IQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAY 263
A + GF + + + R +I+R++++I+ LA V L D I AY
Sbjct: 200 VLASQQVGEEGFDAEAVYSNRNDDIPAATRASISRVSSIIRTLAMHNVPLTDALILEAY 258
>gi|328875590|gb|EGG23954.1| Exosome complex exonuclease RRP4 [Dictyostelium fasciculatum]
Length = 379
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 172/302 (56%), Gaps = 20/302 (6%)
Query: 14 LASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLV 73
+ D DP + F ++TPG T+ Y+ GHGTF + ASV GVV+KV++LV
Sbjct: 60 MYDDENDPKTQ---FARNLVTPGTTISKEGEYLKGHGTFHHQGSLIASVSGVVDKVDKLV 116
Query: 74 SVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQD 133
SVRA +SRY GEIG+++VGR+T + +++W VD N+ + L LT++NLPGG QRRR+ D
Sbjct: 117 SVRAFHSRYQGEIGDIIVGRITQVAAKRWKVDCNARQDYILMLTAINLPGGIQRRRTSSD 176
Query: 134 EEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC 193
E MR F E DLI AE+ I+ +GS+ LHTR+ +YGKL G+L++VPP+LI+RSK H
Sbjct: 177 ELQMRNFFVENDLIYAEVQAINGDGSVALHTRNQRYGKLMNGVLVSVPPALIKRSKQHAH 236
Query: 194 NLACGAQVILGCNGYVWVS----------AIDENKSGGFIQNMEV------VKLSDRETI 237
L CG +ILG NGY+W++ I ++ + Q + V V R+ I
Sbjct: 237 TLDCGVDIILGVNGYIWIADSAQQQAQTQLIQRHEKDSYDQPLFVPPQVKQVSRESRQKI 296
Query: 238 TRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ-TLGL 296
R+ N I L +++ SI Y +L D+L P ++ +Q +G
Sbjct: 297 ARVRNAIHILHTHYMLIHTRSIMEIYNMTLNMPLTDMLTPNKARQIITAVHTNIQERMGF 356
Query: 297 AD 298
D
Sbjct: 357 KD 358
>gi|403415869|emb|CCM02569.1| predicted protein [Fibroporia radiculosa]
Length = 308
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 175/291 (60%), Gaps = 35/291 (12%)
Query: 25 IHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
IH+ T PGE + + +M GHGT+ D+EE+ ASV G VE+VN+L+SVRA+ +RY
Sbjct: 15 IHKLT----CPGEPLTSSQAFMRGHGTYVDNEEVIASVAGTVERVNKLISVRAVRTRYNP 70
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ------------------ 126
E+G++VVGR+T +Q ++W VD NS ++ L L+SVNLPGG Q
Sbjct: 71 EVGDLVVGRITEVQPRRWKVDANSRQDAVLMLSSVNLPGGVQVSSFGVLASYVTSILRIL 130
Query: 127 -RRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI 185
RR+ DE MR F +EGDL+ AE+ +G+++LHTRSL+YGKL G L+ +PP LI
Sbjct: 131 KRRKLESDELQMRTFFEEGDLLVAEVQAFFADGAMSLHTRSLRYGKLRNGQLIAIPPVLI 190
Query: 186 RRSKSHFCNLACGAQVILGCNGYVWVSA-IDENKSGG---------FIQNMEVVKLSDRE 235
RR KSHF +L CG +ILG NGYVWVS I +++ G + + + + R
Sbjct: 191 RRLKSHFISLPCGVDLILGLNGYVWVSKHIKQSQQEGEEAFDAEAVYSNRNDDIDDATRI 250
Query: 236 TITRLNNVIKALAESKVMLFDTSIQYAYEESL--KYSTYDLLKPESKLDLV 284
I+R++N+I+ + L DTS+ AYE ++ +Y D L+ ++ LV
Sbjct: 251 AISRVSNIIRVFGAHFIPLTDTSLLEAYEWAVEQEYDIRDSLQEDAGEALV 301
>gi|392589653|gb|EIW78983.1| hypothetical protein CONPUDRAFT_59195 [Coniophora puteana
RWD-64-598 SS2]
Length = 300
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 162/247 (65%), Gaps = 14/247 (5%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I +PGET+ + +M GHGT+ ++EE+ ASV G +E+VN+LV+VR +++RY E+G++VV
Sbjct: 18 ITSPGETITSSQDFMRGHGTYVENEEVIASVAGTIERVNKLVTVRPISTRYNPEVGDLVV 77
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W VD NS ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 78 GRITEVQPKRWKVDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRNFFEEGDLLVAEV 137
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA----QVILGCNG 207
+G+++LHTRSLKYGKL G L+++PP L+RR KSHF L G VILG NG
Sbjct: 138 QAFFADGAMSLHTRSLKYGKLRNGQLVSIPPLLVRRLKSHFLALHAGGGVDVDVILGLNG 197
Query: 208 YVWVS-----AIDENKSGGFIQNMEVVKLSD-----RETITRLNNVIKALAESKVMLFDT 257
YVWVS + E ++G + + + D R I R++N+I+ LA+ V L D
Sbjct: 198 YVWVSRHVEKSAQEGETGFDAEAVYSNRNDDIDSPTRTAIARVSNIIRVLADHVVPLSDA 257
Query: 258 SIQYAYE 264
+ AY+
Sbjct: 258 VLADAYD 264
>gi|405117451|gb|AFR92226.1| exosome complex exonuclease rrp4 [Cryptococcus neoformans var.
grubii H99]
Length = 331
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 157/251 (62%), Gaps = 17/251 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I++PGE + + YM GHGT+ ++ + ASV G +E+VN+L+SVR + SRY E+G++V+
Sbjct: 50 IVSPGEVITSSKEYMRGHGTYVEESNVVASVAGTIERVNKLISVRPLRSRYTPEVGDLVI 109
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +Q+W VD N ++ L L+SVNLPGG QRR+ D MREFL EGDL+ AE+
Sbjct: 110 GRIVDVGAQRWRVDANGRQDAVLMLSSVNLPGGVQRRKIESDALKMREFLAEGDLLVAEV 169
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-----ACGAQVILGCN 206
+G+++LHTRSLKYGKL G LLTVPP LIRR KSHF ++ G VILG N
Sbjct: 170 QAFFGDGAMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHIPPPCGPTGVDVILGLN 229
Query: 207 GYVWVS--AIDENKSGG--------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFD 256
GYVWVS E + GG + + + RE I+ + N+IK LA V L +
Sbjct: 230 GYVWVSNGTSQERREGGEGFDSEGVYSNQNDEISPEGREAISLIANIIKVLASEDVPLTE 289
Query: 257 TSI--QYAYEE 265
T I YA+ E
Sbjct: 290 TLIGESYAWAE 300
>gi|330795128|ref|XP_003285627.1| hypothetical protein DICPUDRAFT_76545 [Dictyostelium purpureum]
gi|325084449|gb|EGC37877.1| hypothetical protein DICPUDRAFT_76545 [Dictyostelium purpureum]
Length = 341
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/265 (41%), Positives = 161/265 (60%), Gaps = 18/265 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + Y+ GHGTF + + ASV G ++KV++L+SV+A+ SRY GE+G+++V
Sbjct: 56 LVIPGQIISREGEYLKGHGTFHNGSNLIASVCGTLDKVDRLISVKALKSRYHGEVGDIIV 115
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + S++W VD NS L+ L L+++NLPGG QRRR+ DE MR F E DL+ AE+
Sbjct: 116 GRITEISSKRWKVDVNSRLDYILMLSAINLPGGIQRRRTSADELQMRNFFVENDLVYAEV 175
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I +GS+ +HTR+ KYGKL G + V PSLI+RSK HF +L CG VILG NGY+W+
Sbjct: 176 QMIMGDGSVAIHTRNQKYGKLQNGHFMKVTPSLIKRSKQHFYSLECGVDVILGLNGYIWI 235
Query: 212 SAIDENKS-GGFIQNMEV---------------VKLSDRETITRLNNVIKALAESKVMLF 255
+ ++ K+ FIQ E + R+ I+R+ N I L + +++
Sbjct: 236 ADTEQQKNQSAFIQKHEKENFDQACIIPDDIKQISKDSRDRISRVKNSIALLEKGFLLIH 295
Query: 256 DTSIQYAYEES--LKYSTYDLLKPE 278
SI Y S +K DLL P+
Sbjct: 296 SKSIMQVYHLSNKMKLGAKDLLHPQ 320
>gi|58258185|ref|XP_566505.1| exosome complex exonuclease rrp4 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134106127|ref|XP_778074.1| hypothetical protein CNBA0770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260777|gb|EAL23427.1| hypothetical protein CNBA0770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222642|gb|AAW40686.1| exosome complex exonuclease rrp4, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 331
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 157/251 (62%), Gaps = 17/251 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I++PGE + + YM GHGT+ ++ + +SV G +E+VN+L+SVR + SRY E+G++V+
Sbjct: 50 IVSPGEVITSSKEYMRGHGTYVEESNVVSSVAGTIERVNKLISVRPLRSRYTPEVGDLVI 109
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +Q+W VD N ++ L L+SVNLPGG QRR+ D MREFL EGDL+ AE+
Sbjct: 110 GRIVEVGAQRWRVDANGRQDAVLMLSSVNLPGGVQRRKIESDALKMREFLAEGDLLVAEV 169
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-----ACGAQVILGCN 206
+G+++LHTRSLKYGKL G LLTVPP LIRR KSHF ++ G VILG N
Sbjct: 170 QAFFGDGAMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHIPPPCGPTGVDVILGLN 229
Query: 207 GYVWVS--AIDENKSGG--------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFD 256
GYVWVS + GG + + + RE I+ + N+IKALA V L +
Sbjct: 230 GYVWVSNGTSQARREGGEGFDSEGVYSNQNDEIPPQGREAISLVANIIKALASEGVPLTE 289
Query: 257 TSI--QYAYEE 265
T I YA+ E
Sbjct: 290 TLIGESYAWAE 300
>gi|321252681|ref|XP_003192490.1| exosome complex exonuclease rrp4 [Cryptococcus gattii WM276]
gi|317458958|gb|ADV20703.1| Exosome complex exonuclease rrp4, putative [Cryptococcus gattii
WM276]
Length = 331
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 156/247 (63%), Gaps = 15/247 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I++PGE + + YM GHGT+ ++ + +SV G +E+VN+L+SVR ++SRY E+G++V+
Sbjct: 50 IVSPGEVITSSKEYMRGHGTYVEESNVVSSVAGTIERVNKLISVRPLHSRYTPEVGDLVI 109
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +Q+W VD N ++ L L+SVNLPGG QRR+ D MREFL EGDL+ AE+
Sbjct: 110 GRIVEVGAQRWRVDANGRQDAVLMLSSVNLPGGVQRRKIESDALKMREFLAEGDLLVAEV 169
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-----ACGAQVILGCN 206
+G+++LHTRSLKYGKL G LLTVPP LIRR KSHF ++ G VILG N
Sbjct: 170 QAFFGDGAMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHVPPPCGPTGVDVILGLN 229
Query: 207 GYVWVS--AIDENKSGG--------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFD 256
GYVWVS + GG + + + RE ++ + N+IKALA + L +
Sbjct: 230 GYVWVSNGTSQGRREGGEGFDSEGVYSNQNDEISPEGREAVSLIANIIKALAGEGIPLTE 289
Query: 257 TSIQYAY 263
T I +Y
Sbjct: 290 TLISESY 296
>gi|213404002|ref|XP_002172773.1| exosome complex exonuclease RRP4 [Schizosaccharomyces japonicus
yFS275]
gi|212000820|gb|EEB06480.1| exosome complex exonuclease RRP4 [Schizosaccharomyces japonicus
yFS275]
Length = 326
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 162/265 (61%), Gaps = 14/265 (5%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPG+ + +M GHGT+ D I ASV G+V++VN+L+SV+ SRY+ EIG++VV
Sbjct: 53 VVTPGQLITEDPQFMRGHGTYADGARICASVAGIVQRVNKLISVKPFKSRYVPEIGDLVV 112
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W VD L++ L L+S+NLPGG QRR+S DE MR F +E DL+ AE+
Sbjct: 113 GRITEVQPKRWKVDIGVKLDAILMLSSINLPGGVQRRKSETDELQMRTFFQENDLLVAEV 172
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
Q ++GS+++HTRSLKYGKL G+ L VPP LI RSK H + G VIL NGYVW+
Sbjct: 173 QQYFSDGSVSIHTRSLKYGKLRNGVFLKVPPVLIVRSKVHSYSFPGGVDVILSVNGYVWI 232
Query: 212 SA-IDENKSGGFIQNME-------------VVKLSDRETITRLNNVIKALAESKVMLFDT 257
S ++ KS I +E ++ R I+R+ I+ALA ++ L +
Sbjct: 233 SKHMETQKSSVSITRLEEEASFAIYSNENDEIEPHTRLAISRMYICIQALAARELPLTEA 292
Query: 258 SIQYAYEESLKYSTYDLLKPESKLD 282
+I YE SL+Y+ L LD
Sbjct: 293 TILSIYELSLQYTDLQQLTNPEVLD 317
>gi|336379426|gb|EGO20581.1| hypothetical protein SERLADRAFT_476909 [Serpula lacrymans var.
lacrymans S7.9]
Length = 237
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 137/190 (72%), Gaps = 4/190 (2%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PGE + + +M GHGT+ D +E+ ASV G +E+VN+LV+VRA+ SRY E+G++VVGR+
Sbjct: 45 PGEFITSSQTFMRGHGTYVDQDEVIASVAGTIERVNKLVTVRAIRSRYNPEVGDLVVGRI 104
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
T +Q ++W VD +S ++ L L+SVNLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 105 TEVQPRRWKVDAHSRQDAILMLSSVNLPGGVQRRKLESDELQMRNFFEEGDLLVAEVQAF 164
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA- 213
++G+++LHTRSLKYGKL G L+ VPP L+RR KSHF +L CG +ILG NGY+WVS
Sbjct: 165 FSDGAMSLHTRSLKYGKLRNGQLIIVPPILVRRLKSHFISLPCGVDLILGLNGYIWVSKH 224
Query: 214 ---IDENKSG 220
ID+ + G
Sbjct: 225 VKDIDQGEQG 234
>gi|19113896|ref|NP_592984.1| exosome subunit Rrp4 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1175376|sp|Q09704.1|RRP4_SCHPO RecName: Full=Exosome complex component rrp4; AltName:
Full=Ribosomal RNA-processing protein 4
gi|1052797|emb|CAA90501.1| exosome subunit Rrp4 (predicted) [Schizosaccharomyces pombe]
Length = 329
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 165/277 (59%), Gaps = 22/277 (7%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPG+ V +M GHGT+ +D I ASV G V++VN+L+SV+ + S+Y+ EIG++++
Sbjct: 57 LVTPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLII 116
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ +Q ++W VD + + L L+S+NLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 117 GKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEV 176
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
Q ++GS+++HTRSLKYGKL G+ L VPP+L+ RSKSH LA G +IL NGYVWV
Sbjct: 177 QQYFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAGGVDIILSVNGYVWV 236
Query: 212 SAIDENKSGGFIQNMEVVKLSD------------------RETITRLNNVIKALAESKVM 253
S +EN+ ++ + +L + R I+R++ IK LA +
Sbjct: 237 SKHNENQHS----SVSITRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLASRSLP 292
Query: 254 LFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQK 290
L SI YE SL +S L +D + A +
Sbjct: 293 LTQASITNFYESSLVFSNLQDLTVPKNMDQIAMEAMQ 329
>gi|320166659|gb|EFW43558.1| exosome complex exonuclease RRP4 [Capsaspora owczarzaki ATCC 30864]
Length = 284
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 169/283 (59%), Gaps = 46/283 (16%)
Query: 32 ILTPGETVEYLEGYMTGHGTF----PDDE-----EIKASVGGVVEKVNQLVSVRAMNSRY 82
I+ PG+T+ +M GHGT+ DE ++ A+ G+VE+VN+L+ VR + +RY
Sbjct: 27 IVCPGDTITTETSFMRGHGTYFQQQSKDENEQPAQLTAAYAGIVERVNKLLVVRPLRTRY 86
Query: 83 IGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLK 142
GE+G+VVVGRVTGL ++W +RRRS +DE MMR+ L
Sbjct: 87 SGEVGDVVVGRVTGLGGKRW-----------------------KRRRSAEDELMMRDHLT 123
Query: 143 EGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVI 202
EGD+ISAE+ + ++G+L+LHTRSLKYGKL G ++VP +LI+R K+HF +L CG +I
Sbjct: 124 EGDVISAEVQSLFSDGTLSLHTRSLKYGKLHYGSFMSVPSALIKRCKNHFHDLPCGVTMI 183
Query: 203 LGCNGYVWVSAIDENKSGGFIQ----------NMEVVKLSDRETITRLNNVIKALAESKV 252
LG NGY+W+S E ++ +Q + ++ ++ R I R+ N I ALA +
Sbjct: 184 LGLNGYIWLS---ETRATAQMQLNPNDEIEETSFQITSINARSNIARIRNCINALASRHM 240
Query: 253 MLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLG 295
++D+++ YAY+ SL++ LL+PE+ +D + A+ L G
Sbjct: 241 PIYDSTVVYAYDASLEFDVKALLQPEA-IDKITAHARALADPG 282
>gi|193786851|dbj|BAG52174.1| unnamed protein product [Homo sapiens]
Length = 181
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 132/176 (75%), Gaps = 3/176 (1%)
Query: 119 VNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILL 178
+NLPGGE RRRS +DE MR FL+EGDLISAE+ + ++G+++LHTRSLKYGKLGQG+L+
Sbjct: 1 MNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLV 60
Query: 179 TVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRE 235
V PSL++R K+HF +L CGA VILG NG++W+ E+K +GGFI N+E V L+DRE
Sbjct: 61 QVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADRE 120
Query: 236 TITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
I+RL N I +L ++ML+DTSI Y YE SL + D+LKPE ++V+ T Q+L
Sbjct: 121 VISRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRL 176
>gi|392577741|gb|EIW70870.1| hypothetical protein TREMEDRAFT_28582 [Tremella mesenterica DSM
1558]
Length = 300
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 156/245 (63%), Gaps = 15/245 (6%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIG 87
T+ ++ PGE + + YM GHGT+ +D+++ +S+ G +E+VN+LVSVRA+ SRY E+G
Sbjct: 17 LTNRVVAPGEAIASSKEYMRGHGTYVEDDQVVSSIAGTIERVNKLVSVRALKSRYTPEVG 76
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
++VVGR+ + S +W VD ++ ++ L L+SVNLPGG QRR+ D MREFL EGDL+
Sbjct: 77 DLVVGRIVEVGSLRWKVDAHARQDAILMLSSVNLPGGVQRRKIESDALKMREFLAEGDLL 136
Query: 148 SAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-----ACGAQVI 202
AE+ +G+++LHTRSL+YGKL G+LL+V P LIRR KSHF +L G VI
Sbjct: 137 VAEVQAFFQDGAMSLHTRSLRYGKLRNGLLLSVQPRLIRRLKSHFHHLPPPLGPSGVDVI 196
Query: 203 LGCNGYVWVSA--IDENKSGG--------FIQNMEVVKLSDRETITRLNNVIKALAESKV 252
LG NGY+WV+A E + GG + + + RE I+ + N+I+ A +
Sbjct: 197 LGLNGYIWVAAGTTAERREGGEGFDAEGVYSDKNDDIPPEGREAISLVANMIQLFAFHNI 256
Query: 253 MLFDT 257
L DT
Sbjct: 257 PLSDT 261
>gi|281206417|gb|EFA80604.1| Exosome complex exonuclease [Polysphondylium pallidum PN500]
Length = 392
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 164/271 (60%), Gaps = 19/271 (7%)
Query: 27 EFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
+F ++TPG+T+ ++ GHGTF + + ASV G+VE+V++LVSVR +RY GEI
Sbjct: 66 QFDRNLMTPGQTISREGEFLRGHGTFHSNNALLASVCGLVERVDKLVSVRPFKARYHGEI 125
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+T + S++W VD + + L LT++NLPGG QRRR+ DE MR F E DL
Sbjct: 126 GDIVVGRITQVGSKRWKVDVAARQDYILMLTAINLPGGIQRRRTSSDELQMRNFFVENDL 185
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGC 205
+ AE+ I+ +GS+ LHTR+ +YGKL G ++VPPSLI+R K H+ +L + G +ILG
Sbjct: 186 VYAEVQAINQDGSVALHTRNQRYGKLQNGTFMSVPPSLIKRGKIHYHSLESIGVDIILGV 245
Query: 206 NGYVWVS-AIDENKSGGFIQNME------------VVKLSDRET---ITRLNNVIKALAE 249
NGY+W++ + + + IQ E ++ RE+ I R+ N I+ L
Sbjct: 246 NGYIWLADSAQQRQQASLIQQHEKENYDQPLLIPQAIREVSRESRIKIARVKNSIEVLNR 305
Query: 250 SKVMLFDTSIQYAYE--ESLKYSTYDLLKPE 278
S +++ +I Y+ E + D+L P+
Sbjct: 306 SFMLIHPRAIMEIYQLAEKMSLPLKDMLHPD 336
>gi|66802526|ref|XP_635135.1| hypothetical protein DDB_G0291310 [Dictyostelium discoideum AX4]
gi|60463454|gb|EAL61639.1| hypothetical protein DDB_G0291310 [Dictyostelium discoideum AX4]
Length = 380
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 161/269 (59%), Gaps = 22/269 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDE-EIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
++ G+T+ Y+ GHGTF D + ASV G ++KV++LVSV+A+ SRY GE+G+++
Sbjct: 88 LVITGQTISREGEYLKGHGTFNDGSGSLVASVCGTLDKVDRLVSVKALKSRYHGEVGDII 147
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGR+T + S++W VD NS L+ L L+++NLPGG QRRR+ DE MR F E DL+ AE
Sbjct: 148 VGRITEITSKRWKVDVNSRLDYILMLSAINLPGGIQRRRTSADELQMRSFFVENDLVYAE 207
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ + +GS+ +HTR+ KYGKL G V PSLI+RSK HF NL CG VILG NGY+W
Sbjct: 208 VQMVMGDGSVAIHTRNQKYGKLQNGHFTKVIPSLIKRSKQHFYNLECGVDVILGVNGYIW 267
Query: 211 VS-----------AIDENKSGGFIQNM------EVVKLS--DRETITRLNNVIKALAESK 251
++ K F ++ E+ ++S R+ I R+ N I L +
Sbjct: 268 IADSEQQKNQQQFIQKHEKEPTFDPSIPLIIPDEIKQVSKESRDRIARVKNSISLLEKGF 327
Query: 252 VMLFDTSIQYAYEESLKYS--TYDLLKPE 278
+++ SI Y+ SLK + DLL P+
Sbjct: 328 LLIHQKSIMNVYKLSLKMKLQSKDLLHPQ 356
>gi|452822004|gb|EME29028.1| exosome complex component RRP4 [Galdieria sulphuraria]
Length = 300
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 158/256 (61%), Gaps = 9/256 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ PG+ + E + GHGT + ++V G+VE+VN+LV+V + +RY E+G+V+V
Sbjct: 30 FVAPGDDILSQESVVRGHGTMVQGTRLTSTVAGIVERVNKLVAVLPIRARYSAEVGDVIV 89
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + S++W VD NS ++ L L++VNLPGG QRRR+ +DE MREF + DLISAE+
Sbjct: 90 GRIRDIVSRRWKVDVNSRQDAVLLLSAVNLPGGVQRRRTYEDELKMREFFDQDDLISAEV 149
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
++ +G + LHTRSLKYGKL GI ++V P L++RSK HF L+CG +ILG NGYVW+
Sbjct: 150 QELKQDGLIMLHTRSLKYGKLENGIFISVTPQLVKRSKKHFHRLSCGVHIILGDNGYVWI 209
Query: 212 SAID-----ENKSGGFIQNMEVVK--LSDRETITRLNNVIKALAESKVMLFDTSIQYAYE 264
D + + F + E K L R ++ R+ N I L + + +I YE
Sbjct: 210 YVDDAAYGEDEEEANFSKRRENDKSNLEQRLSLIRVRNSICILDLYFLSIQPETIMLIYE 269
Query: 265 ESLKYS--TYDLLKPE 278
E+++ + +L+P+
Sbjct: 270 ETIRRNIPVQHMLRPD 285
>gi|168019913|ref|XP_001762488.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686221|gb|EDQ72611.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 357
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 146/235 (62%), Gaps = 13/235 (5%)
Query: 48 GHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTN 107
GHGT P +E++ A+V GVVE+VN+LVSVR + +RY E G+VVVGRVT + +W VD N
Sbjct: 96 GHGTQPVNEQLLATVCGVVERVNRLVSVRPLRARYNAETGDVVVGRVTEVGGNRWKVDVN 155
Query: 108 SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSL 167
S ++ L L +VNLPGG QRRR+ DE MR+ E DLISAE+ + +GSL LHTRSL
Sbjct: 156 SRKDAELLLAAVNLPGGIQRRRTAIDELNMRDLYVENDLISAEVQSLHQDGSLHLHTRSL 215
Query: 168 KYGKLGQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYVWVSAI------DENKSG 220
KYGKLG G L+ V P LI+R K HF L G +ILGCNG++W++ D +SG
Sbjct: 216 KYGKLGNGQLVKVAPYLIKRLKQHFHQLKDLGVDLILGCNGFIWIAGTSAPGQKDNKRSG 275
Query: 221 GFIQNM------EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
+ + V+ RE I RL N ++ L +++ SI YE SL++
Sbjct: 276 SVVTSASAAEGESAVQFEVRERICRLANSVRVLGALGLLVSPESIIQTYEASLQF 330
>gi|341895169|gb|EGT51104.1| hypothetical protein CAEBREN_13458 [Caenorhabditis brenneri]
Length = 303
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 169/265 (63%), Gaps = 5/265 (1%)
Query: 32 ILTPGETV-EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
I+ PG++V + + +M GHGT+ D EI +S+ GVV+++N+L+ V+ + RY GE+G+VV
Sbjct: 31 IVIPGQSVCDAPQQFMRGHGTYIRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGDVV 90
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
V RV +Q+++W D +S L + L L SV LPGG+ RR+ V+DEE M EFLK G+LI AE
Sbjct: 91 VARVVEVQAKRWKCDVSSRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAE 150
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ Q+ +G+L LHTR+ KYGKL QGI + VPP LI++SK HF L G VI+GCNG VW
Sbjct: 151 VQQVQHDGTLMLHTRNNKYGKLRQGITIKVPPHLIKKSKKHFHTLPYGMAVIIGCNGNVW 210
Query: 211 VS-AIDEN---KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
V+ ++ E + G I +VV R T+ R+ + I+ L + + +F SI AYE S
Sbjct: 211 VTPSLPETTLEEDGSHIHEFQVVPQDIRLTMVRVASCIRLLRDYSISIFINSITTAYEMS 270
Query: 267 LKYSTYDLLKPESKLDLVLCTAQKL 291
Y +L + E+ L A +L
Sbjct: 271 QPYDIKELSEQETSSRLAYLIAARL 295
>gi|342319344|gb|EGU11293.1| Exosome complex exonuclease rrp4 [Rhodotorula glutinis ATCC 204091]
Length = 545
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 156/249 (62%), Gaps = 15/249 (6%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PGE + + +M GHGT+ D+++ ASV G +E+VN+LVSVR + ++Y GE+G++VVGR+
Sbjct: 90 PGEVIADAQRWMRGHGTYVQDDKVLASVAGTLERVNKLVSVRPLRTKYRGEVGDLVVGRI 149
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
+ ++W V+T++ + L L+S+NLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 150 VEVGPKRWKVETHASQNAVLMLSSINLPGGVQRRKLESDELQMRTFFQEGDLLVAEVQAF 209
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAI 214
+G+++LHTRSLKYGKL G L+TVPP+L+ RSKSHF L G +I+G NGY+W+S
Sbjct: 210 FGDGAMSLHTRSLKYGKLKNGQLVTVPPALVVRSKSHFHTLPFGVDLIIGLNGYIWISKT 269
Query: 215 ---------------DENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSI 259
+E+ G + E + S R +ITR+ +I LA + + +
Sbjct: 270 IKKETRLDGEEAGFGEESGEGVYSGENEDISPSIRASITRVALLISLLATHCIPITAELV 329
Query: 260 QYAYEESLK 268
A++ +L+
Sbjct: 330 TEAHDVALR 338
>gi|401888810|gb|EJT52759.1| exosome complex exonuclease rrp4 [Trichosporon asahii var. asahii
CBS 2479]
gi|406697467|gb|EKD00726.1| exosome complex exonuclease rrp4 [Trichosporon asahii var. asahii
CBS 8904]
Length = 277
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 146/230 (63%), Gaps = 14/230 (6%)
Query: 48 GHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTN 107
GHGT+ +++ I +SV G +E+VN+L+SVR +++RY+ E+G++V+GR+ + Q+W V+ N
Sbjct: 18 GHGTYVENDTITSSVAGTLERVNKLISVRPLSTRYVPEVGDLVIGRIVEVAGQRWKVEAN 77
Query: 108 SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSL 167
+ ++ L L+SVNLPGG QRR+ D MREFL EGDL+ AE+ ++G+++LHTRSL
Sbjct: 78 ARQDAVLMLSSVNLPGGVQRRKVESDSLKMREFLAEGDLLVAEVQAFFSDGAMSLHTRSL 137
Query: 168 KYGKLGQGILLTVPPSLIRRSKSHFCNLAC-----GAQVILGCNGYVWVSAIDENKSGG- 221
KYGKL G+LL++ P LIRR KSHF +L G VILG NGYVWVS + G
Sbjct: 138 KYGKLRNGMLLSLSPRLIRRLKSHFVHLPAPCGPHGVDVILGLNGYVWVSLGSKQSREGA 197
Query: 222 --------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAY 263
+ + + + DR IT + NVI LA V L DT I Y
Sbjct: 198 EGLESEGVYRNDNDEMDAEDRAAITDVANVISMLAAHDVPLSDTLIAEGY 247
>gi|308477587|ref|XP_003101007.1| CRE-EXOS-2 protein [Caenorhabditis remanei]
gi|308264351|gb|EFP08304.1| CRE-EXOS-2 protein [Caenorhabditis remanei]
Length = 303
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 171/271 (63%), Gaps = 6/271 (2%)
Query: 30 DPILTPGETV-EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
D I+ PG+ V + + +M GHGT+ D EI +S+ GVV+++N+L+ V+ + RY GE+G+
Sbjct: 29 DKIVIPGQAVCDAPQQFMRGHGTYIRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGD 88
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
VVV RV +Q+++W D +S L + L L SV LPGG+ RR+ V+DEE M EFLK G+LI
Sbjct: 89 VVVARVVEVQAKRWKCDVSSRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELIC 148
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGY 208
AE+ Q+ +G+L LHTR+ KYGKL QGIL+ VPP LI++SK HF L G VI+GCNG
Sbjct: 149 AEVQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKHFHTLPYGMAVIIGCNGN 208
Query: 209 VWVS-AIDEN---KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYE 264
VWV+ A+ E + G + ++V R + R+ ++ L + + +F S+ YE
Sbjct: 209 VWVTPALPETTVEEDGSHVHEFQIVPQDIRLVMIRVAACVRLLRDYSISIFLNSLTTCYE 268
Query: 265 ESLKYSTYDLLKPESKLDLV-LCTAQKLQTL 294
S Y +L + E+ L L TA+ LQ L
Sbjct: 269 MSQPYDIKELSEQETSSRLAYLITARLLQEL 299
>gi|384251998|gb|EIE25475.1| hypothetical protein COCSUDRAFT_22697 [Coccomyxa subellipsoidea
C-169]
Length = 310
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 151/238 (63%), Gaps = 10/238 (4%)
Query: 32 ILTPGETVE--YLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+ G+T++ EG++ GHGT D ++ A+V G+VE+VN+LVSVR + RY +G++
Sbjct: 34 IVCVGDTIDTDMQEGFLRGHGTQVVDSKLVATVCGLVERVNKLVSVRPLQQRYSAALGDI 93
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GRV + ++W +D N+ + AL L+SV+LPGG QRRR+ +DE MR +EGDLISA
Sbjct: 94 VIGRVAEVAGKRWKIDLNARQDVALQLSSVDLPGGAQRRRTAEDEINMRSIFQEGDLISA 153
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLAC-GAQVILGCNGY 208
E+ + +GS+ LHTRS KYGKL G ++TV P+LI+R K HF LA G ++ILGCNG
Sbjct: 154 EVQSLHADGSIALHTRSTKYGKLSGGQVVTVSPNLIKRQKQHFNVLASLGVEIILGCNGM 213
Query: 209 VWVSAIDENKSGGFIQNME-------VVKLSDRETITRLNNVIKALAESKVMLFDTSI 259
+WV+ E G E V R+ + ++ N ++ LA +++F +SI
Sbjct: 214 IWVAPQAEGSENGHAAGSEQQSIPNRTVPPQQRKAVCQVANAVRLLALLNMLIFPSSI 271
>gi|388580789|gb|EIM21101.1| hypothetical protein WALSEDRAFT_19193 [Wallemia sebi CBS 633.66]
Length = 302
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 156/263 (59%), Gaps = 15/263 (5%)
Query: 17 DRIDPLIEIHEFTDPILT-PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSV 75
D +D E +F+ LT PGE + YM GHGT+ +D I + + GVVE+VN+LVSV
Sbjct: 2 DGVDIDDEDEDFSSSKLTAPGEIIASSSAYMHGHGTYVNDGNIISQMSGVVERVNKLVSV 61
Query: 76 RAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEE 135
R + +Y+ ++G++V+GR+ +Q+++W V+ N+ ++ L L+S+NLPGG QRR+ DE
Sbjct: 62 RPLKHKYLPQVGDLVIGRIVEVQAKRWKVNINAASDAVLMLSSINLPGGVQRRKLESDEL 121
Query: 136 MMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL 195
MR F EGDL AE+ +GS++LHTRSLKYGKL G L TV P+L+RR KSHF L
Sbjct: 122 QMRNFFTEGDLCVAEVQSFFHDGSVSLHTRSLKYGKLRNGTLATVQPNLMRRLKSHFYTL 181
Query: 196 ACGAQVILGCNGYVWVSA----------IDENKS----GGFIQNMEVVKLSDRETITRLN 241
+I+G NG +WVS +EN+ G + + + RE+I R
Sbjct: 182 PVNVDLIIGLNGRIWVSKHMQVGQEVNLNEENEGFDSEGVYSNENDDIDSQTRESINRTA 241
Query: 242 NVIKALAESKVMLFDTSIQYAYE 264
VI LA V L D+ I AY+
Sbjct: 242 IVINILASHTVPLTDSLIATAYD 264
>gi|302833054|ref|XP_002948091.1| hypothetical protein VOLCADRAFT_73556 [Volvox carteri f.
nagariensis]
gi|300266893|gb|EFJ51079.1| hypothetical protein VOLCADRAFT_73556 [Volvox carteri f.
nagariensis]
Length = 321
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 164/279 (58%), Gaps = 23/279 (8%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
D I T G+ EG++ GHGT DE++ A+V GVVE+VN+L+ VR +NSRY E G+V
Sbjct: 41 DEISTEGQ-----EGFLRGHGTQVVDEKLVATVCGVVERVNKLIYVRTLNSRYNAEQGDV 95
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGRV + + W VD S ES L L++V+LPGG QRRR+ +DE MR F +EG+LISA
Sbjct: 96 VVGRVADIAGKAWRVDLKSRQESKLLLSAVHLPGGIQRRRNAEDELNMRSFFREGELISA 155
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGY 208
E+ + +GS+ LHTRS KYGKL G L+ VPP+LI+R K HF L A G ++I+GCNG
Sbjct: 156 EVQSVHADGSVALHTRSAKYGKLTHGQLVEVPPNLIKRQKQHFHTLEALGVELIIGCNGL 215
Query: 209 VWVSAIDENKSGGFIQNMEVVKLSDR---------------ETITRLNNVIKALAESKVM 253
VWV+ + +++ +D E + R+ N I+ L +
Sbjct: 216 VWVAPLRPDRAAAAAAADIGADAADAAAEAPVAPPPSKGQLEVVCRMANAIRVLTRLYMP 275
Query: 254 LFDTSIQYAYEESLKYST--YDLLKPESKLDLVLCTAQK 290
++ SI YE ++ + D+L+P+ +V AQ+
Sbjct: 276 VYPASIMAVYEAAMDKNVELRDMLEPDFLEAVVKQEAQR 314
>gi|299471475|emb|CBN79426.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 271
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 96/188 (51%), Positives = 136/188 (72%), Gaps = 7/188 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDD------EEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
I+ PG+ + ++GY+ GHGT+ ++ ++ A V GVVE+VN+L+SVR + SRYIGE
Sbjct: 8 IVVPGQEITSVQGYLRGHGTYVEEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGE 67
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
+G++VVGRVT +QS++W V+ + + L L+SVNLPGG+QR R+ +D+ MR F +E D
Sbjct: 68 VGDLVVGRVTEVQSKRWSVEVGAHRSAVLMLSSVNLPGGQQRMRTYEDQLQMRSFFQEHD 127
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA-CGAQVILG 204
LISAE+ Q++++G + LHTRSLKYGKL G L++VPP LIRR K H +L G VILG
Sbjct: 128 LISAEVQQVNSDGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILG 187
Query: 205 CNGYVWVS 212
NG VW+S
Sbjct: 188 TNGNVWIS 195
>gi|443924374|gb|ELU43399.1| exosome complex exonuclease rrp4 [Rhizoctonia solani AG-1 IA]
Length = 332
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 154/254 (60%), Gaps = 17/254 (6%)
Query: 24 EIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVN----QLVSVRAMN 79
E++ + +PGE + + +M GHGTF +DE++ ASV G VE+VN Q SV
Sbjct: 51 ELNSTASRLTSPGEPITSSQAFMRGHGTFVEDEQVIASVAGTVERVNKDFCQGSSVDI-- 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQ-----KWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE 134
RY E+G++VVGR+T + +W VD NS + L L+SVNLPGG QRR+ DE
Sbjct: 109 HRYTPEVGDLVVGRITEASPRSSTAFRWKVDVNSRQDGLLMLSSVNLPGGVQRRKLESDE 168
Query: 135 EMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCN 194
MR F +E DL+ AE+ + ++GS++LHTRSL+YGKL G L+ VP L+RR KSHF +
Sbjct: 169 LQMRTFFEESDLLVAEVQSLFSDGSISLHTRSLRYGKLRNGQLVQVPNGLVRRLKSHFFS 228
Query: 195 LACGAQVILGCNGYVWVSA----IDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAES 250
L CG +ILG NGY+WVS I++ GF + E + + I R+ N+I+ LA
Sbjct: 229 LPCGVDLILGLNGYIWVSKHVKEINQVGEEGF--DAEPIDTTTSRAIIRVCNIIRVLARH 286
Query: 251 KVMLFDTSIQYAYE 264
V L D I+ AYE
Sbjct: 287 HVPLTDHLIEQAYE 300
>gi|308454282|ref|XP_003089783.1| hypothetical protein CRE_02717 [Caenorhabditis remanei]
gi|308268796|gb|EFP12749.1| hypothetical protein CRE_02717 [Caenorhabditis remanei]
Length = 273
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/265 (42%), Positives = 166/265 (62%), Gaps = 5/265 (1%)
Query: 32 ILTPGETV-EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
I+ PG+ V + + +M GHGT+ D EI +S+ GVV+++N+L+ V+ + RY GE+G+VV
Sbjct: 1 IVIPGQAVCDAPQQFMRGHGTYIRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGDVV 60
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
V RV +Q+++W D +S L + L L SV LPGG+ RR+ V+DEE M EFLK G+LI AE
Sbjct: 61 VARVVEVQAKRWKCDVSSRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAE 120
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ Q+ +G+L LHTR+ KYGKL QGIL+ VPP LI++SK HF L G VI+GCNG VW
Sbjct: 121 VQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKHFHTLPYGMAVIIGCNGNVW 180
Query: 211 VS-AIDEN---KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
V+ A+ E + G + ++V R + R+ ++ L + + +F S+ YE S
Sbjct: 181 VTPALPETTVEEDGSHVHEFQIVPQDIRLVMIRVAACVRLLRDYSISIFLNSLTTCYEMS 240
Query: 267 LKYSTYDLLKPESKLDLVLCTAQKL 291
Y +L + E+ L A +L
Sbjct: 241 QPYDIKELSEQETSSRLAYLIAARL 265
>gi|268536880|ref|XP_002633575.1| C. briggsae CBR-EXOS-2 protein [Caenorhabditis briggsae]
Length = 303
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 163/264 (61%), Gaps = 5/264 (1%)
Query: 32 ILTPGETV-EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
I+ PG +V + + +M GHGTF D EI +S+ GVV+++N+L+ V+ + RY GE+G+VV
Sbjct: 31 IVIPGHSVCDAPQQFMRGHGTFIRDGEIVSSLSGVVKQLNRLLMVKTIKQRYAGEVGDVV 90
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
V RV +Q+++W D +S L + L L SV LPGG+ RR+ V+DEE M EFLK G+LI AE
Sbjct: 91 VARVVEVQAKRWKCDVSSRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAE 150
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
I Q+ +G+L LHTR+ KYGKL QGIL+ VPP LI++SK HF L G VI+GCNG VW
Sbjct: 151 IQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKHFHTLPYGMAVIIGCNGNVW 210
Query: 211 VS-AIDEN---KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
V+ A+ E + G + + V R + R+ I+ L + + +F S+ YE S
Sbjct: 211 VTPALPETTLEEDGSHVNEFQTVPHDIRLVMVRVAACIRILRDYSISIFLNSLTTCYEMS 270
Query: 267 LKYSTYDLLKPESKLDLVLCTAQK 290
Y +L E+ L A +
Sbjct: 271 QPYDIKELSDQETSSRLAYLIAAR 294
>gi|301108495|ref|XP_002903329.1| exosome complex exonuclease RRP4 [Phytophthora infestans T30-4]
gi|262097701|gb|EEY55753.1| exosome complex exonuclease RRP4 [Phytophthora infestans T30-4]
Length = 342
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 128/184 (69%), Gaps = 3/184 (1%)
Query: 32 ILTPGETVEYLEG-YMTGHGTF-PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
++TPG+ + G ++ GHGT+ E+ ASV GVVEKVNQL++VR + SRYIGE+G++
Sbjct: 29 VVTPGQVISTDTGAFLRGHGTYLSGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDI 88
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGRVT + S++W VD N +++L L+SV LPGG QRRR+ D+ MR F E DLISA
Sbjct: 89 VVGRVTEVASKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLISA 148
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGY 208
EI ++ +GSL+LHTRSL+YGKL G + V L++R K H L G VILG NGY
Sbjct: 149 EIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMATLPGIGIDVILGTNGY 208
Query: 209 VWVS 212
+WVS
Sbjct: 209 IWVS 212
>gi|358060848|dbj|GAA93466.1| hypothetical protein E5Q_00107 [Mixia osmundae IAM 14324]
Length = 316
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 152/253 (60%), Gaps = 21/253 (8%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PGE + +M GHGT+ DE + +++ G V++VN+LVSVRA+ RY E+G++++GR+
Sbjct: 31 PGEFLASSHDWMRGHGTYVADESVVSTMAGTVDRVNKLVSVRALRGRYKPEVGDLIIGRI 90
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
+Q+++W VD +S ++L L+S+NLPGG QRR+ DE MR F +EGDL+ AE+ +
Sbjct: 91 VEVQAKRWKVDASSRQFASLLLSSINLPGGVQRRKLESDELQMRTFFQEGDLLVAEVQAL 150
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV--- 211
G ++LHTRSLK+GKL G+L+ V LI R KSHF L CG +I+G NG++W+
Sbjct: 151 YANGEMSLHTRSLKFGKLRNGVLVRVQSQLIVRQKSHFHALPCGVNLIIGMNGWIWIYQP 210
Query: 212 SAIDENKSGGFIQNMEVVKLSDRE------------------TITRLNNVIKALAESKVM 253
S + N S + ++ +D + I R VI+ALA + V
Sbjct: 211 SPAESNTSRNNGIGADGLETTDTDASMLYSSTNDPLDNVIMIAIARTAAVIQALANNNVP 270
Query: 254 LFDTSIQYAYEES 266
L D+SI AYE S
Sbjct: 271 LTDSSIAEAYEVS 283
>gi|17544090|ref|NP_500978.1| Protein EXOS-2 [Caenorhabditis elegans]
gi|351059307|emb|CCD74150.1| Protein EXOS-2 [Caenorhabditis elegans]
Length = 303
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 166/265 (62%), Gaps = 5/265 (1%)
Query: 32 ILTPGETV-EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
I+ PG +V + + +M GHGT+ D EI +S+ GVV+++N+L+ V+ + RY GE+G+VV
Sbjct: 31 IVIPGHSVCDAPQQFMRGHGTYVRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGDVV 90
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
V RV +Q+++W D S L + L L SV LPGG+ RR+ V+DEE M EFLK G+LI AE
Sbjct: 91 VARVVEVQAKRWKCDVASRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAE 150
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ Q+ +G+L LHTR+ KYGKL QGIL+ VPP LI++SK HF L G VI+GCNG VW
Sbjct: 151 VQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKHFHTLPYGMAVIIGCNGSVW 210
Query: 211 VS-AIDEN---KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
V+ ++ E + G + ++V R T+ R+ ++ L + + ++ S+ YE S
Sbjct: 211 VTPSLPETTLEEDGSHVHEFQIVPPDVRVTMVRIAACVRLLRDYSISIYLNSLTTCYEMS 270
Query: 267 LKYSTYDLLKPESKLDLVLCTAQKL 291
Y +L + ++ L A +L
Sbjct: 271 QPYEIKELAEQDTSSRLAYLIAARL 295
>gi|302765186|ref|XP_002966014.1| hypothetical protein SELMODRAFT_84338 [Selaginella moellendorffii]
gi|300166828|gb|EFJ33434.1| hypothetical protein SELMODRAFT_84338 [Selaginella moellendorffii]
Length = 271
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 151/237 (63%), Gaps = 7/237 (2%)
Query: 39 VEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQ 98
V++ +G + GHGT D E+ A+V G VE+VN+LV V+ + SRY +G+VV+GRVT L
Sbjct: 13 VDHQDGILRGHGTQLVDGELVATVCGTVERVNKLVFVKPLRSRYEARVGDVVIGRVTELA 72
Query: 99 SQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEG 158
++W VD NS ++ L L++VNLPGG QRRR+ DE MR EGDLISAE+ Q +++
Sbjct: 73 QKRWKVDVNSKQDAHLMLSAVNLPGGIQRRRTATDELNMRSVFVEGDLISAEV-QSASQD 131
Query: 159 SLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYVWVSAIDEN 217
S+ LHTRSLKYGKL G L+ V P LI+R HF + +VI GCNGYVW+S++ +
Sbjct: 132 SIHLHTRSLKYGKLQMGQLVKVEPYLIKRLSQHFHSFGQYQVEVIFGCNGYVWISSVAQR 191
Query: 218 KSGGFIQNME-----VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
+ Q E + L+ RE I R+ N ++ALA +++ S+ AYE S+ +
Sbjct: 192 EQQQQQQQQEDGPAIPIPLATRERICRVGNAVRALASQGLVVSPDSVVAAYEASVGW 248
>gi|159488815|ref|XP_001702398.1| hypothetical protein CHLREDRAFT_108094 [Chlamydomonas reinhardtii]
gi|158271192|gb|EDO97018.1| predicted protein [Chlamydomonas reinhardtii]
Length = 306
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 160/272 (58%), Gaps = 30/272 (11%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
D I T G+ EG++ GHGT D ++ A+V GVVE+VN+L+ V+ +NSRY E G+V
Sbjct: 21 DEISTEGQ-----EGFLRGHGTQVVDGKLVATVCGVVERVNKLIYVKTLNSRYNAEQGDV 75
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGRV L + W VD S E+ L L++V+LPGG QRRR+ +DE MR F +EG+LISA
Sbjct: 76 VVGRVADLAGKAWRVDLKSRQEAKLLLSAVHLPGGIQRRRNAEDELNMRSFFREGELISA 135
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGY 208
E+ + +GS+ LHTRS KYGKL G LL VPP+LI+R K HF L A G ++I+GCNG
Sbjct: 136 EVQSVHADGSVALHTRSAKYGKLVCGQLLEVPPNLIKRQKQHFHTLEALGVELIIGCNGL 195
Query: 209 VWVSAI---------------------DENKSGGFIQNMEVVKLSDRETITRLNNVIKAL 247
VWV+ + DE+++ ++ E + R+ N I+ L
Sbjct: 196 VWVAPLRPDRLAAANAAAGGGAGSAGADEDEAAAAAPPPPPSRMQ-LEVVCRMANAIRVL 254
Query: 248 AESKVMLFDTSIQYAYEESL--KYSTYDLLKP 277
+ ++ SI YE ++ + + D+++P
Sbjct: 255 TRLYMPVYPASIMATYEAAVEGEVALADMMEP 286
>gi|20378673|gb|AAM20932.1|AF449619_1 exonuclease [Phytophthora sojae]
gi|348674044|gb|EGZ13863.1| hypothetical protein PHYSODRAFT_249437 [Phytophthora sojae]
Length = 330
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 150/256 (58%), Gaps = 23/256 (8%)
Query: 32 ILTPGETVEYLEG-YMTGHGTF-PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
++TPG+ + G ++ GHGT+ E+ ASV GVVEKVNQL++VR + SRYIGE+G++
Sbjct: 68 VVTPGQVISTDTGAFLRGHGTYLSGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDI 127
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGRVT + +++W VD N +++L L+SV LPGG QRRR+ D+ MR F E DLIS
Sbjct: 128 VVGRVTDVANKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLIST 187
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGY 208
EI ++ +GSL+LHTRSL+YGKL G + V L++R K H L G VILG NGY
Sbjct: 188 EIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMVTLPGLGIDVILGTNGY 247
Query: 209 VWVSAI--------DENKSGGFIQNMEVV------------KLSDRETITRLNNVIKALA 248
+WVS E+ S +EV+ + DR I R++ + L
Sbjct: 248 IWVSRSMAALGGDDAEDTSSSMETRVEVLTAKRQLHASTPMSVEDRRKIARVSQALLKLN 307
Query: 249 ESKVMLFDTSIQYAYE 264
E ++ SI YE
Sbjct: 308 EQFRLITPESIMATYE 323
>gi|412989089|emb|CCO15680.1| exosome complex exonuclease RRP4 [Bathycoccus prasinos]
Length = 319
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 149/248 (60%), Gaps = 15/248 (6%)
Query: 34 TPGETVEYL---EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
TPGE V+ + EG++ GHGT + E++A+V GVVE+VN+LVSV+ M ++Y E G+VV
Sbjct: 36 TPGEVVDGVNASEGFLKGHGTQVSEGELRATVSGVVERVNKLVSVKPMKAKYTPETGDVV 95
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGR+ + S++W VD NS E+ L L+SVNLP G+QRRR+ DE M D+ISAE
Sbjct: 96 VGRINMISSKRWKVDINSRQEAVLQLSSVNLPSGQQRRRNEADELNMSRLFDTADVISAE 155
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA----QVILGCN 206
+ + +G+ LH RS KYG+L +G+L+ V PSL++R HF L +V++GCN
Sbjct: 156 VQSLFQDGAANLHARSTKYGRLSRGVLVEVCPSLVKRLPQHFHALEVAPGVFIEVLIGCN 215
Query: 207 GYVWVSA--------IDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTS 258
G++WV + KS + + VV +RE I R+ N ++ L E + S
Sbjct: 216 GFIWVGSPGAATSKQATNEKSKTHEEELVVVDKKERENIVRVANCVRVLDEIFFYVTPQS 275
Query: 259 IQYAYEES 266
I Y++S
Sbjct: 276 IMSIYKQS 283
>gi|302776644|ref|XP_002971475.1| hypothetical protein SELMODRAFT_147871 [Selaginella moellendorffii]
gi|300160607|gb|EFJ27224.1| hypothetical protein SELMODRAFT_147871 [Selaginella moellendorffii]
Length = 270
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 150/236 (63%), Gaps = 6/236 (2%)
Query: 39 VEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQ 98
V++ +G + GHGT D E+ A+V G VE+VN+LV V+ + SRY +G+VV+GRVT L
Sbjct: 13 VDHQDGILRGHGTQLVDGELVATVCGTVERVNKLVFVKPLRSRYEARVGDVVIGRVTELA 72
Query: 99 SQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEG 158
++W VD NS ++ L L++VNLPGG QRRR+ DE MR EGDLISAE+ Q +++
Sbjct: 73 QKRWKVDVNSKQDAHLMLSAVNLPGGIQRRRTATDELNMRSVFVEGDLISAEV-QSASQD 131
Query: 159 SLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYVWVSAIDEN 217
S+ LHTRSLKYGKL G L+ V P LI+R HF + +VI GCNGYVW+S++ +
Sbjct: 132 SIHLHTRSLKYGKLQMGQLVKVEPYLIKRLSQHFHSFGQYQVEVIFGCNGYVWISSVAQR 191
Query: 218 KSGGFIQNME----VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
+ + + L+ RE I R+ N ++ALA +++ S+ AYE S+ +
Sbjct: 192 EQQQQQLEEDGAAIPIPLATRERICRVGNAVRALASQGLVVSPDSVVAAYEASVGW 247
>gi|430811223|emb|CCJ31317.1| unnamed protein product [Pneumocystis jirovecii]
Length = 312
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 156/261 (59%), Gaps = 10/261 (3%)
Query: 26 HEFTDPILTPGETVEYLEGYMTGHGTFPDDEE-IKASVGGVVEKVNQLVSVRAMNSRYIG 84
H + ++TPGE + +M GHGT+ D+ + ASV G V++VN+L+SV+ + SRY+
Sbjct: 39 HFSSSKVVTPGEFITNDPQFMRGHGTYVRDKNTVYASVVGTVQRVNKLISVKPLKSRYLP 98
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
EIG++V+GR+ + +++W VD S ++ L L+S+NLPGG RR+S D MR F EG
Sbjct: 99 EIGDLVIGRIVKVGNKRWKVDIGSKQDAILMLSSINLPGGILRRKSETDVLKMRTFFSEG 158
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILG 204
DL+ H S +GS++LHTRSLKYGKL G + VP +LI RS H L G VI G
Sbjct: 159 DLLVKYRHFFS-DGSISLHTRSLKYGKLRNGSFVQVPSNLIVRSNVHSYCLPNGTDVIFG 217
Query: 205 CNGYVWVSA---IDENKSGGFIQNME----VVKLSDRETITRLNNVIKALAESKVMLFDT 257
NGY+WV + KSG I +E SD +TR+ N+IKALA KV + +
Sbjct: 218 TNGYIWVRKHVEMSSEKSGVSITRLEEEASETIYSDINDVTRVCNIIKALAACKVTINEK 277
Query: 258 SIQYAYEESLKYS-TYDLLKP 277
I YE S+ Y+ +LL P
Sbjct: 278 MILLGYEASMIYADASELLWP 298
>gi|255720428|ref|XP_002556494.1| KLTH0H14696p [Lachancea thermotolerans]
gi|238942460|emb|CAR30632.1| KLTH0H14696p [Lachancea thermotolerans CBS 6340]
Length = 370
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 154/279 (55%), Gaps = 40/279 (14%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ + + ASV G V +VN+L+SV + RY E G+ ++
Sbjct: 64 IVTPGELVTDDPIWMRGHGTYFLENKTYASVAGTVSRVNRLLSVVPLRGRYAPETGDHII 123
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 124 GRIAEVGNRRWKVDIGAKQHAVLMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNAEV 183
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ L VP LI RSK+H NL VILG NG++W+
Sbjct: 184 QSLFQDGSASLHTRSLKYGKLRNGVFLQVPSPLIVRSKNHTHNLPGNVTVILGVNGFIWL 243
Query: 212 SAIDE----NKSGGFI------------------QNMEVVKLSD---------------- 233
E N S + ++ + +L +
Sbjct: 244 RKTSELDTANNSSAVVGKNAATLSGASGEFKPGNNSVSITRLEEESSWEIYSDKNDHISD 303
Query: 234 --RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYS 270
R+TITR +NVIKALA ++ + + + AYE S+ YS
Sbjct: 304 VMRKTITRYSNVIKALAHCEIGITEARVVAAYEASMAYS 342
>gi|50309037|ref|XP_454524.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643659|emb|CAG99611.1| KLLA0E12739p [Kluyveromyces lactis]
Length = 437
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/273 (41%), Positives = 155/273 (56%), Gaps = 35/273 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + +M GHGT+ + + +SV G V +VN+L+SV + SRYI E G+ +V
Sbjct: 136 IVTPGELITDDPIWMKGHGTYFLENKTYSSVVGTVSRVNRLLSVLPLKSRYIPETGDHIV 195
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W VD + + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 196 GRITDVGNRRWKVDIGAKQYAVLMLGSVNLPGGVLRRKSETDELQMRNFLKEGDLLNAEV 255
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G + VP SLI RSK+H NL +ILG NG+VW+
Sbjct: 256 QSLFQDGSASLHTRSLKYGKLRNGTFVQVPSSLIVRSKNHTHNLPGNVTIILGVNGFVWI 315
Query: 212 ---SAID-------------------ENKSGGFIQNME-------------VVKLSDRET 236
S +D N I +E V +S R+T
Sbjct: 316 RKSSKMDLSGKTTTTGSGQSDHLPGSNNAMSVSITRLEEESSWEIYSDKNDTVTVSVRQT 375
Query: 237 ITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
ITR NVIKALA ++ + + I AYE S+ Y
Sbjct: 376 ITRYANVIKALAHCELGITEPRIISAYEASMAY 408
>gi|344231621|gb|EGV63503.1| hypothetical protein CANTEDRAFT_114297 [Candida tenuis ATCC 10573]
gi|344231622|gb|EGV63504.1| hypothetical protein CANTEDRAFT_114297 [Candida tenuis ATCC 10573]
Length = 345
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 158/280 (56%), Gaps = 40/280 (14%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ ++ I +SV G V +VN+L+SV + +Y E G+ VV
Sbjct: 39 IVTPGELVTDDPVWMKGHGTYFLNDNIYSSVAGNVSRVNRLLSVIPLRGKYQPETGDHVV 98
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 99 GRITEVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNAEV 158
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ + GS +LHTRSLKYGKL GI LTVP L+ +SK+H L+ VILG NG++W+
Sbjct: 159 QSVFSNGSASLHTRSLKYGKLRNGIFLTVPSRLVVKSKNHTHKLSGDVSVILGINGFIWL 218
Query: 212 SAI--------DENKSGGFIQNM--------------------------------EVVKL 231
S + N +G +Q+ E +
Sbjct: 219 SKTSTSNFTNNESNIAGNRVQSAIDGQGSYNPGVGSVSITRLEEESSWEIYSDKNEFIPT 278
Query: 232 SDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYST 271
+ R+TITR NVI+AL+ ++ + D I Y+ SL+Y+
Sbjct: 279 TVRDTITRYYNVIRALSYGELGITDQRITMGYQASLQYAN 318
>gi|156837522|ref|XP_001642785.1| hypothetical protein Kpol_1005p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156113352|gb|EDO14927.1| hypothetical protein Kpol_1005p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 365
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 157/281 (55%), Gaps = 43/281 (15%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G + +VN+L+SV + RY E G+ V+
Sbjct: 54 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTISRVNRLLSVIPLRGRYSPETGDHVI 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W VD + + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRITEVGNKRWKVDIDGKQNAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ L VP SLI RSK+H NL V+LG NGY+W+
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGLFLQVPSSLIIRSKNHTHNLPGNVTVLLGVNGYIWL 233
Query: 212 ---SAIDENK-------SGGFI--------------QNMEVVKLSD-------------- 233
S +D+ + +GG+ NM + +L +
Sbjct: 234 RKTSQMDQARDLPPGGSTGGYPSNSGPTGAKSLNPSSNMSITRLEEESSWQIYSDENDPT 293
Query: 234 -----RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
R+TI+R NVI+ALA ++ + I AYE S+ Y
Sbjct: 294 ITNSIRQTISRYANVIRALAYCEIGITQERIVSAYEASMAY 334
>gi|254571395|ref|XP_002492807.1| 3'-5' exoribonuclease involved in rRNA processing [Komagataella
pastoris GS115]
gi|238032605|emb|CAY70628.1| 3'-5' exoribonuclease involved in rRNA processing [Komagataella
pastoris GS115]
gi|328353185|emb|CCA39583.1| exosome complex component RRP4 [Komagataella pastoris CBS 7435]
Length = 348
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 44/288 (15%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + +M GHGT+ +E+ +SV G + KVN+L+SV + RY E G+ VV
Sbjct: 40 IVTPGELITEDPIWMRGHGTYYLNEKTYSSVAGTISKVNKLLSVVPLRGRYQPETGDHVV 99
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + ++W VD + ++AL L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 100 GRITEVGPKRWKVDIGARQDAALMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNAEV 159
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I +GS +LHTRSLKYGKL G + VP SLI R K+H L +I+G NGY+W+
Sbjct: 160 QSIFQDGSASLHTRSLKYGKLRNGYFVKVPSSLIIRQKNHLHELPGSITIIIGVNGYIWI 219
Query: 212 S-----------------AIDENKSGG---------------------------FIQNME 227
S A+D S + E
Sbjct: 220 SKTLYQHQKSLPSTTGNNALDSTVSSAAAKSNSYTPGQGSVSITRLEEESSWEIYSDKNE 279
Query: 228 VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLL 275
+ ++ ++TI R N +KALA+ + + +T I AYE S+ Y LL
Sbjct: 280 PISVATKDTIARYANCVKALAKCDIGITETRIIAAYEASMVYENAGLL 327
>gi|325187003|emb|CCA21547.1| exonuclease putative [Albugo laibachii Nc14]
Length = 300
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 140/216 (64%), Gaps = 9/216 (4%)
Query: 14 LASDRIDPL------IEIHEFTDPILTPGETVEYLEG-YMTGHGTFPDDEEIKASVGGVV 66
+AS++ P+ EI + ++ PGE + G ++ GHGT+ +++E+ ASV GVV
Sbjct: 12 IASEQTTPVDAFACEAEITDDRSGVVLPGEVINSASGAFLRGHGTYFENQELIASVAGVV 71
Query: 67 EKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ 126
EKVNQL+SV + SRY GE+G++VVGRV + ++ W +D NS + L L++V LPGG Q
Sbjct: 72 EKVNQLISVWPIASRYFGEVGDIVVGRVAEVGNKCWKIDVNSQQHALLLLSAVYLPGGAQ 131
Query: 127 RRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIR 186
RRR+ +D+ MR F +E DLISAE+ ++ +G++TLHTRSL+YGKL G + V P+L++
Sbjct: 132 RRRTYEDQLQMRNFFQENDLISAEVQEVRYDGTVTLHTRSLRYGKLENGQFVCVSPALVK 191
Query: 187 RSKSHFCNLA--CGAQVILGCNGYVWVSAIDENKSG 220
R K H L VI+G NGY+W++ SG
Sbjct: 192 RMKQHMITLGEDLNVDVIIGANGYLWITRSMREDSG 227
>gi|367014473|ref|XP_003681736.1| hypothetical protein TDEL_0E02820 [Torulaspora delbrueckii]
gi|359749397|emb|CCE92525.1| hypothetical protein TDEL_0E02820 [Torulaspora delbrueckii]
Length = 355
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 113/279 (40%), Positives = 150/279 (53%), Gaps = 39/279 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V KVN+L+SV + RY E G+ +V
Sbjct: 49 IVTPGELVSEDPAWMRGHGTYFLDNMTYSSVAGTVSKVNRLLSVLPLKGRYSPETGDHIV 108
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 109 GRIAEVGNKRWRVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 168
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI RSK+H NL V+LG NGY+W+
Sbjct: 169 QSLFQDGSASLHTRSLKYGKLRDGVFCQVPSSLIVRSKNHTHNLPGNVTVVLGVNGYIWL 228
Query: 212 ---SAIDENK----------SGGFI--------------------------QNMEVVKLS 232
S +D + +GG +N + S
Sbjct: 229 RKTSKMDSARDAPSGASMGSTGGPTGAKSLKADSVSITRLEEESSWQIYVDENDPTITNS 288
Query: 233 DRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYST 271
R+TI R NVIKALA ++ + I AYE S+ YS
Sbjct: 289 VRQTIARYANVIKALAYCEIGITQERIVSAYEASMSYSN 327
>gi|401409874|ref|XP_003884385.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
gi|325118803|emb|CBZ54354.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
Length = 347
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 149/264 (56%), Gaps = 16/264 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + EG M GHGT+ +I A+V G++EKVN+LV +R + SRY G +G+VVV
Sbjct: 77 VVVPGQQIVVEEGCMRGHGTYEKGGKIYAAVCGILEKVNKLVYIRPLRSRYQGSVGDVVV 136
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRVT + + KW+VD N+ + L L +++LP EQRRR +D M+ F GD+I E+
Sbjct: 137 GRVTDILNGKWLVDVNAGQAANLALAAISLP--EQRRRLDEDMLEMQNFFVVGDVICCEV 194
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
++ +G + LHTRS +YG+L GI L V P I+R + H L+CG QV+LG NGY+W+
Sbjct: 195 QRVRADGQILLHTRSARYGRLLNGIFLAVAPQQIQRQRHHIVQLSCGVQVVLGLNGYIWI 254
Query: 212 ------SAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQ----- 260
SA D E V R I+R+ N++ LA+S FD S Q
Sbjct: 255 SLPLKTSAKDTLNYAHVQTTQEKVSKETRLAISRVRNIVLCLAKSN---FDISTQALERM 311
Query: 261 YAYEESLKYSTYDLLKPESKLDLV 284
Y S + DL P +LV
Sbjct: 312 YDISVSRGWEAKDLADPVVMQELV 335
>gi|448530544|ref|XP_003870089.1| hypothetical protein CORT_0E03700 [Candida orthopsilosis Co 90-125]
gi|380354443|emb|CCG23958.1| hypothetical protein CORT_0E03700 [Candida orthopsilosis]
Length = 361
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 168/314 (53%), Gaps = 49/314 (15%)
Query: 7 KPVIEIMLASDRIDPLIEIHEFT--DP---------ILTPGETVEYLEGYMTGHGTFPDD 55
KP+ + +R D +E E + DP I+TPGE + +M GHGT+ +
Sbjct: 22 KPISRVEYEEERSDDEMEGEESSLGDPRQQEVRANAIVTPGELITSDPVWMKGHGTYFIN 81
Query: 56 EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALH 115
++ +SV G + +VN+L+SV A+ +Y E G+ VVGR+T + +++W VD + ++ L
Sbjct: 82 DKTYSSVVGNISRVNRLLSVNAIRGKYTPETGDHVVGRITEVANKRWKVDIGTKQDAILM 141
Query: 116 LTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQG 175
L SVNLPGG RR+S DE MR FLKEGDL++ E+ I G +LHTRSLKYGKL G
Sbjct: 142 LGSVNLPGGILRRKSESDELQMRSFLKEGDLLNCEVQTIFNNGIASLHTRSLKYGKLRNG 201
Query: 176 ILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV---------SAIDENKSGGFIQN- 225
I L +P SL+ +SK+H +L VILG NGY+W+ S+ +N++G +Q+
Sbjct: 202 IFLKIPSSLVVKSKNHSYDLPGNVSVILGVNGYIWLYKTKAKPATSSATKNETGLKVQSG 261
Query: 226 ----------------------------MEVVKLSDRETITRLNNVIKALAESKVMLFDT 257
E + S R I+R NVIKALA ++ + +
Sbjct: 262 AKDYTPGQGSVSITRLEEESSWEIYSDKNEEINQSTRNNISRYYNVIKALAFGELGITEQ 321
Query: 258 SIQYAYEESLKYST 271
I YE SL YS
Sbjct: 322 RIIMGYEASLAYSN 335
>gi|410079336|ref|XP_003957249.1| hypothetical protein KAFR_0D04660 [Kazachstania africana CBS 2517]
gi|372463834|emb|CCF58114.1| hypothetical protein KAFR_0D04660 [Kazachstania africana CBS 2517]
Length = 358
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 150/278 (53%), Gaps = 40/278 (14%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + RY E G+ +V
Sbjct: 51 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVTPLRGRYSPETGDHIV 110
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 111 GRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 170
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI RSK+H NL ++LG NGY+W+
Sbjct: 171 QSLFQDGSASLHTRSLKYGKLRNGLFCQVPSSLIVRSKNHTHNLPGNVTIVLGVNGYIWL 230
Query: 212 S-------AIDENKSGGF--------------IQNMEVVKLSD----------------- 233
A D +G QN+ + +L +
Sbjct: 231 RKTSKMDLARDSPMAGSSGSANGPTGATSLNPTQNVSITRLEEESSWQIYSDENDPDISN 290
Query: 234 --RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
R+T+TR NVIKALA ++ + I AYE S+ Y
Sbjct: 291 SMRQTVTRYANVIKALAYCEIGITQERIISAYEASMAY 328
>gi|354547831|emb|CCE44566.1| hypothetical protein CPAR2_403690 [Candida parapsilosis]
Length = 348
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 166/312 (53%), Gaps = 47/312 (15%)
Query: 7 KPVIEIMLASDRIDPLIEIHEFT--DP---------ILTPGETVEYLEGYMTGHGTFPDD 55
KP+ + + D IE+ E + DP I+TPGE + +M GHGT+ +
Sbjct: 11 KPIPRVEYEDEGSDDDIEVDEASQQDPRHQEVRANAIVTPGELITSDPVWMKGHGTYFIN 70
Query: 56 EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALH 115
++ +SV G + +VN+L+SV A+ +Y+ E G+ VVGR+T + +++W VD + ++ L
Sbjct: 71 DKTYSSVVGNISRVNRLLSVNAIRGKYVPETGDHVVGRITEVANKRWKVDIGTKQDAILM 130
Query: 116 LTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQG 175
L SVNLPGG RR+S DE MR FLKEGDL++ E+ I G +LHTRSLKYGKL G
Sbjct: 131 LGSVNLPGGILRRKSESDELQMRSFLKEGDLLNCEVQTIFNNGIASLHTRSLKYGKLRNG 190
Query: 176 ILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV---------SAIDEN----KSGG- 221
I L +P SL+ +SK+H +L VILG NGY+W+ S ++ N +SG
Sbjct: 191 IFLKIPSSLVVKSKNHSYDLPGNVSVILGVNGYIWLYKTKAKLAPSTVNSNGLKVQSGTK 250
Query: 222 ----------------------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSI 259
+ E + S R I R NVIKALA ++ + + I
Sbjct: 251 DYTPGQGSISITRLEEESSWEIYSDKNEEINQSTRNNIARYCNVIKALAFGELGITEQRI 310
Query: 260 QYAYEESLKYST 271
YE SL Y+
Sbjct: 311 IMGYEASLAYAN 322
>gi|190405851|gb|EDV09118.1| 3'-5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
Length = 359
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 163/305 (53%), Gaps = 41/305 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 54 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVV 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRITEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG NGY+W+
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWL 233
Query: 212 ------------------SAIDENKSGGFIQ-NMEVVKLSD------------------- 233
S+I G + N + +L +
Sbjct: 234 RKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNI 293
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV---LCTAQK 290
R+ I R NVIKALA ++ + I AYE S+ YS L ++ ++ + + TA+K
Sbjct: 294 RQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEK 353
Query: 291 LQTLG 295
++ G
Sbjct: 354 MRGNG 358
>gi|221508148|gb|EEE33735.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 356
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + EG M GHGT+ +I A+V G++EKVN+LV +R + SRY G +G+VVV
Sbjct: 86 VVVPGQQIVVEEGCMRGHGTYEKGGKIFAAVCGILEKVNKLVYIRPLRSRYQGSVGDVVV 145
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRVT + + KW+VD NS + L L +++LP E RRR +D M+ F GD+I E+
Sbjct: 146 GRVTDILNGKWLVDVNSGQAACLALAAISLP--EHRRRLDEDMLEMQNFFVVGDVICCEV 203
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
++ +G + LHTRS +YG+L G+ L V P I+R H L+CG QV+LG NGY+W+
Sbjct: 204 QRVRADGQILLHTRSTRYGRLMNGVFLAVAPQQIQRQSHHIVQLSCGVQVVLGLNGYIWI 263
Query: 212 ------SAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
SA D E V R I+R+ N++ LA S + +I+ Y+
Sbjct: 264 SLPMKTSAKDTMNYAHVQTTHEKVSKEMRLAISRVRNIVLCLARSNFDISTQTIERMYDV 323
Query: 266 SLK--YSTYDLLKPESKLDLV 284
S+ + DL P +LV
Sbjct: 324 SVSRGWEAKDLADPLVMQELV 344
>gi|221486367|gb|EEE24628.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
Length = 353
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + EG M GHGT+ +I A+V G++EKVN+LV +R + SRY G +G+VVV
Sbjct: 83 VVVPGQQIVVEEGCMRGHGTYEKGGKIFAAVCGILEKVNKLVYIRPLRSRYQGSVGDVVV 142
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRVT + + KW+VD NS + L L +++LP E RRR +D M+ F GD+I E+
Sbjct: 143 GRVTDILNGKWLVDVNSGQAACLALAAISLP--EHRRRLDEDMLEMQNFFVVGDVICCEV 200
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
++ +G + LHTRS +YG+L G+ L V P I+R H L+CG QV+LG NGY+W+
Sbjct: 201 QRVRADGQILLHTRSTRYGRLMNGVFLAVAPQQIQRQSHHIVQLSCGVQVVLGLNGYIWI 260
Query: 212 ------SAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
SA D E V R I+R+ N++ LA S + +I+ Y+
Sbjct: 261 SLPMKTSAKDTMNYAHVQTTHEKVSKEMRLAISRVRNIVLCLARSNFDISTQTIERMYDV 320
Query: 266 SLK--YSTYDLLKPESKLDLV 284
S+ + DL P +LV
Sbjct: 321 SVSRGWEAKDLADPLVMQELV 341
>gi|237833725|ref|XP_002366160.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211963824|gb|EEA99019.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 353
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + EG M GHGT+ +I A+V G++EKVN+LV +R + SRY G +G+VVV
Sbjct: 83 VVVPGQQIVVEEGCMRGHGTYEKGGKIFAAVCGILEKVNKLVYIRPLRSRYQGSVGDVVV 142
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRVT + + KW+VD NS + L L +++LP E RRR +D M+ F GD+I E+
Sbjct: 143 GRVTDILNGKWLVDVNSGQAACLALAAISLP--EHRRRLDEDMLEMQNFFVVGDVICCEV 200
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
++ +G + LHTRS +YG+L G+ L V P I+R H L+CG QV+LG NGY+W+
Sbjct: 201 QRVRADGQILLHTRSTRYGRLMNGVFLAVAPQQIQRQSHHIVQLSCGVQVVLGLNGYIWI 260
Query: 212 ------SAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
SA D E V R I+R+ N++ LA S + +I+ Y+
Sbjct: 261 SLPMKTSAKDTMNYAHVQTTHEKVSKEMRLAISRVRNIVLCLARSNFDISTQTIERMYDV 320
Query: 266 SLK--YSTYDLLKPESKLDLV 284
S+ + DL P +LV
Sbjct: 321 SVSRGWEAKDLADPLVMQELV 341
>gi|50427353|ref|XP_462289.1| DEHA2G17248p [Debaryomyces hansenii CBS767]
gi|49657959|emb|CAG90795.1| DEHA2G17248p [Debaryomyces hansenii CBS767]
Length = 346
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 150/279 (53%), Gaps = 39/279 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ +++ +SV G V +VN+L+SV + RY E G+ +V
Sbjct: 42 IVTPGELVTDDPVWMKGHGTYFLNDKTYSSVAGNVSRVNRLLSVVPLRGRYQAETGDHIV 101
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + ++W VD + + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 102 GRITEVGPKRWKVDIGAKQSAILMLGSVNLPGGVLRRKSESDELQMRGFLKEGDLLNAEV 161
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I + GS +LHTRSLKYGKL GI + VP +LI +SK+H NL VILG NGY+W+
Sbjct: 162 QSIFSNGSASLHTRSLKYGKLRNGIFVKVPSNLIIKSKNHSHNLPGNISVILGVNGYIWL 221
Query: 212 SAI----------DENKSGGFI-----------------------------QNMEVVKLS 232
S NK+ I +N + S
Sbjct: 222 SKTSSSGKSNANASSNKAQASIDAHGSYNPGQGSVSITRLEEESSWEIYSDKNDPNISNS 281
Query: 233 DRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYST 271
R ITR NVIKAL ++ + + I YE SL Y+
Sbjct: 282 VRSNITRYYNVIKALGYGELGITEQRITMGYEASLAYAN 320
>gi|331228344|ref|XP_003326839.1| exosome complex component RRP4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305829|gb|EFP82420.1| exosome complex component RRP4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 158/289 (54%), Gaps = 33/289 (11%)
Query: 28 FTDPILT-PGETVEYLEGYMTGHGTFP------------DDEE------IKASVGGVVEK 68
F P L PGE + + +M GHGTF D E I++S+ G VE+
Sbjct: 30 FDQPALVVPGEMIASSKYWMRGHGTFIEEQSEEQEGGELDGETQTSEGLIRSSLAGTVER 89
Query: 69 VNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRR 128
+N+L++V ++ RY E+G++V+GR+T +QS++W V+ + L L SVNLPGG QRR
Sbjct: 90 INKLITVIPLSGRYRPEVGDLVIGRITEVQSKRWKVEAGGRQHAVLMLGSVNLPGGVQRR 149
Query: 129 RSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRS 188
+ DE MR F +EGDL+ AE+ +GS++LHTRS KYGKL G+LL VP LI R
Sbjct: 150 KLESDELQMRFFFQEGDLLVAEVQGFFGDGSMSLHTRSRKYGKLRNGMLLKVPSQLILRL 209
Query: 189 KSHFCNLACGAQVILGCNGYVWVSA------IDENKSGGF---IQNM-----EVVKLSDR 234
KSHF L G +I+G NG++W++ +DE+ F NM E + R
Sbjct: 210 KSHFHILPIGIDLIIGVNGWIWIAQQRAHTELDESLKEAFEAEADNMYSDVNEPISTKTR 269
Query: 235 ETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDL 283
I RL I L+ + + D+SI Y+ SL+ S L + +D+
Sbjct: 270 ANIARLAGAINLLSTHSIPISDSSILRTYQASLEISRLSRLDDDQPMDV 318
>gi|259146817|emb|CAY80073.1| Rrp4p [Saccharomyces cerevisiae EC1118]
gi|323348239|gb|EGA82488.1| Rrp4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 359
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 41/305 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 54 IMTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVV 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG NGY+W+
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWL 233
Query: 212 ------------------SAIDENKSGGFIQ-NMEVVKLSD------------------- 233
S+I G + N + +L +
Sbjct: 234 RKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNI 293
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV---LCTAQK 290
R+ I R NVIKALA ++ + I AYE S+ YS L ++ ++ + + TA+K
Sbjct: 294 RQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEK 353
Query: 291 LQTLG 295
++ G
Sbjct: 354 MRGNG 358
>gi|406603246|emb|CCH45225.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 350
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 153/277 (55%), Gaps = 40/277 (14%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPGE V +M GHGT+ + + +SV G + +VN+L+SV + RY E G+ VV
Sbjct: 47 VVTPGELVTDDPIWMRGHGTYYLENDTYSSVAGTISRVNRLLSVTPIRGRYQPETGDHVV 106
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + ++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 107 GRITEVGQRRWKVDIGAKQDAVLMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNAEV 166
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL GI L VP SLI R+K+H L +I+G NGY+W+
Sbjct: 167 QSLFQDGSASLHTRSLKYGKLRNGIFLKVPSSLIVRAKNHSHQLPGNVSIIIGVNGYIWL 226
Query: 212 ------------SAIDENKSG-----------GFI----------------QNMEVVKLS 232
S I +N S G I QN E + S
Sbjct: 227 RKTTDDLLTNNQSTIGKNASAVNSKGQYNPGQGSISITRLEEESSWEIYSDQN-EQISSS 285
Query: 233 DRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
R TITR +N IK LA ++ + ++ I YE S+ Y
Sbjct: 286 IRSTITRYSNCIKILAHCELGITESRIISTYEASMAY 322
>gi|146415688|ref|XP_001483814.1| hypothetical protein PGUG_04543 [Meyerozyma guilliermondii ATCC
6260]
Length = 330
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 163/303 (53%), Gaps = 48/303 (15%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ +E+ +SV G V +VN+L+SV + +Y E G+ VV
Sbjct: 27 IVTPGELVTDDPSWMKGHGTYFLNEKTYSSVAGNVSRVNRLLSVIPLRGKYQAETGDHVV 86
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W VD ++ L L S+NLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 87 GRITEVGNKRWKVDIGCRQDAVLMLGSINLPGGVLRRKSESDELQMRNFLKEGDLLNAEV 146
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
G + LHTRSLKYGKL GILL VP SL+ +SK+H ++ VILG NGY+W+
Sbjct: 147 QSTYASGMVALHTRSLKYGKLRNGILLQVPSSLVVKSKNHSYDMPGNVSVILGVNGYIWI 206
Query: 212 SAIDE----------NKSGGFIQ----------NMEVVKLSD------------------ 233
S N++ I+ ++ + +L +
Sbjct: 207 SKTTSYQLSATNAATNRAQASIESQAGYNPGQASVAITRLEEESSWEIYSDKNDPISDTI 266
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQT 293
R ITR NVI+AL+ ++ + + I YE SL Y+ D+ L ++++T
Sbjct: 267 RNNITRYYNVIRALSYGELGITEQRIIMGYEASLAYTD----------DVSLIDKEQMET 316
Query: 294 LGL 296
L L
Sbjct: 317 LCL 319
>gi|254580561|ref|XP_002496266.1| ZYRO0C14410p [Zygosaccharomyces rouxii]
gi|238939157|emb|CAR27333.1| ZYRO0C14410p [Zygosaccharomyces rouxii]
Length = 363
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 161/306 (52%), Gaps = 45/306 (14%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + SRY E G+ VV
Sbjct: 54 IVTPGELVTDDPVWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVVPLRSRYTPETGDHVV 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRIAEVGNKRWRVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW- 210
+ +GS +LHTRSLKYGKL G VP SLI RSK+H NL V+LG NGY+W
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGQFCQVPCSLIVRSKNHTHNLPGNVTVVLGVNGYIWL 233
Query: 211 ---------------------------------------VSAIDENKSGGFI--QNMEVV 229
++ ++E S +N +
Sbjct: 234 RKTSKMDMARDAPSGISAPGPSNGAPIGAKTLRSSDSVSITRLEEESSWQIYSDENDPTI 293
Query: 230 KLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV---LC 286
+S R+TI+R NVIKALA ++ + I AYE S+ Y + L ++ + +
Sbjct: 294 SVSLRQTISRYANVIKALAFCEIDITHERIVSAYEASMVYPSVGSLIDREVMETIGQDVL 353
Query: 287 TAQKLQ 292
TA+K++
Sbjct: 354 TAEKMR 359
>gi|50289359|ref|XP_447110.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526419|emb|CAG60043.1| unnamed protein product [Candida glabrata]
Length = 369
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 152/282 (53%), Gaps = 44/282 (15%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + +M GHGT+ D +SV G V +VN+L+SV + RY E G+ ++
Sbjct: 58 IVTPGELITDDPVWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLRGRYAPETGDHII 117
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD S + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 118 GRIAEVGNKRWKVDIGSKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 177
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL GI VP SLI RSK+H NL V+LG NG+VW+
Sbjct: 178 QSLFQDGSASLHTRSLKYGKLRDGIFCQVPSSLIIRSKNHTHNLPGNVTVLLGVNGFVWL 237
Query: 212 ---SAID---ENKSGGFI--------------------------------------QNME 227
S +D + GG +N
Sbjct: 238 RKTSKMDLTRDAPPGGSTGAGRESSVGPTGATHVNTNTNISITRLEEESSWQIYSDENDP 297
Query: 228 VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
+K S+R+TI+R NVIKALA ++ + I AYE S+ +
Sbjct: 298 TIKNSERKTISRYANVIKALAFCEIGITQERIISAYEASMAF 339
>gi|323304683|gb|EGA58445.1| Rrp4p [Saccharomyces cerevisiae FostersB]
Length = 359
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 41/305 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 54 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVV 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG NGY+W+
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWL 233
Query: 212 ------------------SAIDENKSGGFIQ-NMEVVKLSD------------------- 233
S+I G + N + +L +
Sbjct: 234 RKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNI 293
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV---LCTAQK 290
R+ I R NVIKALA ++ + I AYE S+ YS L ++ ++ + + TA+K
Sbjct: 294 RQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEK 353
Query: 291 LQTLG 295
++ G
Sbjct: 354 MRGNG 358
>gi|6321860|ref|NP_011936.1| Rrp4p [Saccharomyces cerevisiae S288c]
gi|731671|sp|P38792.1|RRP4_YEAST RecName: Full=Exosome complex component RRP4; AltName:
Full=Ribosomal RNA-processing protein 4
gi|487962|gb|AAB68393.1| Yhr069cp [Saccharomyces cerevisiae]
gi|151944013|gb|EDN62306.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|207344689|gb|EDZ71749.1| YHR069Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269433|gb|EEU04728.1| Rrp4p [Saccharomyces cerevisiae JAY291]
gi|285809975|tpg|DAA06762.1| TPA: Rrp4p [Saccharomyces cerevisiae S288c]
gi|323333239|gb|EGA74637.1| Rrp4p [Saccharomyces cerevisiae AWRI796]
gi|323354639|gb|EGA86474.1| Rrp4p [Saccharomyces cerevisiae VL3]
gi|349578619|dbj|GAA23784.1| K7_Rrp4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298872|gb|EIW09967.1| Rrp4p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1588284|prf||2208299A exonuclease
Length = 359
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 41/305 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 54 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVV 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG NGY+W+
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWL 233
Query: 212 ------------------SAIDENKSGGFIQ-NMEVVKLSD------------------- 233
S+I G + N + +L +
Sbjct: 234 RKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNI 293
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV---LCTAQK 290
R+ I R NVIKALA ++ + I AYE S+ YS L ++ ++ + + TA+K
Sbjct: 294 RQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEK 353
Query: 291 LQTLG 295
++ G
Sbjct: 354 MRGNG 358
>gi|344305272|gb|EGW35504.1| hypothetical protein SPAPADRAFT_58743 [Spathaspora passalidarum
NRRL Y-27907]
Length = 344
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 147/276 (53%), Gaps = 36/276 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + +M GHGT+ ++ +SV G V +VN+L+SV + RY E G+ +V
Sbjct: 44 IVTPGELITEDPIWMKGHGTYFLNDSTYSSVAGSVSRVNRLLSVIPLRGRYSPETGDHIV 103
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL++ E+
Sbjct: 104 GRITEVANKRWKVDIGTRQDAVLMLGSVNLPGGILRRKSESDELQMRNFLKEGDLLNCEV 163
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I + G +LHTRSLKYGKL GI L VP SLI +SK+H +L VILG NGY+W+
Sbjct: 164 QTIFSNGIASLHTRSLKYGKLRNGIFLKVPSSLIVKSKNHAYDLPGSVSVILGSNGYIWL 223
Query: 212 SAIDENKSGGFIQNMEVVKL------------------------------------SDRE 235
N S N K+ S R
Sbjct: 224 HKTLANTSTTTTVNQNAAKIQGRDYAPGQGSISITRLEEESSWEIYSDQNDPNITSSTRS 283
Query: 236 TITRLNNVIKALAESKVMLFDTSIQYAYEESLKYST 271
I+R NVIKALA ++ + + + YE SL YS
Sbjct: 284 NISRYYNVIKALAYGELGITEQRVILGYEASLAYSN 319
>gi|448262640|pdb|4IFD|H Chain H, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 361
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 41/305 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 56 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVV 115
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 116 GRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 175
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG NGY+W+
Sbjct: 176 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWL 235
Query: 212 ------------------SAIDENKSGGFIQ-NMEVVKLSD------------------- 233
S+I G + N + +L +
Sbjct: 236 RKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNI 295
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV---LCTAQK 290
R+ I R NVIKALA ++ + I AYE S+ YS L ++ ++ + + TA+K
Sbjct: 296 RQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEK 355
Query: 291 LQTLG 295
++ G
Sbjct: 356 MRGNG 360
>gi|339238057|ref|XP_003380583.1| exosome complex exonuclease RRP4 [Trichinella spiralis]
gi|316976511|gb|EFV59796.1| exosome complex exonuclease RRP4 [Trichinella spiralis]
Length = 551
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 142/239 (59%), Gaps = 17/239 (7%)
Query: 47 TGHGT-FPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
GHGT F D+ E+ S G+ +K N+ + + + SRY G +G+ V+GRV + ++W VD
Sbjct: 35 NGHGTYFNDNGELLVSTVGIAKKTNKFICIETVRSRYCGSVGDYVIGRVVEVLQKRWKVD 94
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS------AEIHQISTEGS 159
N+ L + L L+SVNLPGGE RR+S +DE+ MRE L EGDLIS AE+ + +GS
Sbjct: 95 VNARLNAILLLSSVNLPGGELRRKSEEDEQWMRENLVEGDLISVGFVVVAEVMSVYADGS 154
Query: 160 LTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK- 218
L+L R + + KL QG+L++VP LI++ K H + C V G NG +W++ DE +
Sbjct: 155 LSLQLRDI-HRKLNQGVLVSVPSFLIKKRKVHLHHFPCKVTVSFGINGNIWIAPTDEEEK 213
Query: 219 ---SGGFIQNMEVVK-----LSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
S GF+ ++V K + I R N LAE+KVMLF+ S+ AYE SL Y
Sbjct: 214 DCSSSGFMDIIQVCKSTPLTYDTHDNIARFRNCCCLLAENKVMLFEKSLWLAYEYSLAY 272
>gi|260950719|ref|XP_002619656.1| hypothetical protein CLUG_00815 [Clavispora lusitaniae ATCC 42720]
gi|238847228|gb|EEQ36692.1| hypothetical protein CLUG_00815 [Clavispora lusitaniae ATCC 42720]
Length = 355
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 149/278 (53%), Gaps = 39/278 (14%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ E +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 49 IVTPGELVTDDPTWMKGHGTYSLGNETYSSVAGNVSRVNRLLSVIPLRGRYEAETGDHVV 108
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + ++W VD ++ L L SVNLPGG RR++ DE MR FLKEGDL++AE+
Sbjct: 109 GRITEVGQKRWKVDIGCKQDAILMLGSVNLPGGVLRRKNESDELQMRNFLKEGDLLNAEV 168
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I + GS +LHTRSLKYGKL GI L VP SL+ + K+H N +ILG NG++W+
Sbjct: 169 QSIFSNGSASLHTRSLKYGKLRNGIFLKVPSSLVIKQKNHSYNFPGNVSIILGVNGHIWL 228
Query: 212 SAI----------DENKS-------GGFIQNMEVVKL----------------------S 232
S NK+ G + V + S
Sbjct: 229 SKTPSEVSSKANASSNKAQASFDTKGSYNPGQGTVSITRLEEESSWEIYSDKNDPDISES 288
Query: 233 DRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYS 270
R TITR NVIKAL+ ++ + + I+ YE S+ +S
Sbjct: 289 IRHTITRYYNVIKALSACELGITEQRIRMGYEASMMFS 326
>gi|190348059|gb|EDK40445.2| hypothetical protein PGUG_04543 [Meyerozyma guilliermondii ATCC
6260]
Length = 330
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 162/301 (53%), Gaps = 48/301 (15%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ +E+ +SV G V +VN+L+SV + +Y E G+ VV
Sbjct: 27 IVTPGELVTDDPSWMKGHGTYFLNEKTYSSVAGNVSRVNRLLSVIPLRGKYQAETGDHVV 86
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W VD ++ L L S+NLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 87 GRITEVGNKRWKVDIGCRQDAVLMLGSINLPGGVLRRKSESDELQMRNFLKEGDLLNAEV 146
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
G + LHTRSLKYGKL GILL VP SL+ +SK+H ++ VILG NGY+W+
Sbjct: 147 QSTYASGMVALHTRSLKYGKLRNGILLQVPSSLVVKSKNHSYDMPGNVSVILGVNGYIWI 206
Query: 212 SAIDE----------NKSGGFIQ----------NMEVVKLSD------------------ 233
S N++ I+ ++ + +L +
Sbjct: 207 SKTTSYQSSATNAATNRAQASIESQAGYNPGQASVAITRLEEESSWEIYSDKNDPISDTI 266
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQT 293
R ITR NVI+AL+ ++ + + I YE SL Y+ D+ L ++++T
Sbjct: 267 RNNITRYYNVIRALSYGELGITEQRIIMGYEASLAYTD----------DVSLIDKEQMET 316
Query: 294 L 294
L
Sbjct: 317 L 317
>gi|444313939|ref|XP_004177627.1| hypothetical protein TBLA_0A03080 [Tetrapisispora blattae CBS 6284]
gi|387510666|emb|CCH58108.1| hypothetical protein TBLA_0A03080 [Tetrapisispora blattae CBS 6284]
Length = 380
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 153/279 (54%), Gaps = 41/279 (14%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ +SV G V KVN+L+SV + +RY E G+ +V
Sbjct: 72 IVTPGELVTDDPMWMRGHGTYYLSNMTYSSVAGAVSKVNRLLSVLPLKARYSPETGDHIV 131
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W VD + + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 132 GRITEVGNRRWKVDIGAKQHAVLMLGSVNLPGGILRRKSENDELQMRSFLKEGDLLNAEV 191
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL GI L VP SLI RSK+H NL V+LG NGY+W+
Sbjct: 192 QTLFQDGSASLHTRSLKYGKLRDGIFLRVPSSLIVRSKNHTHNLPGNVTVVLGVNGYIWL 251
Query: 212 ---SAID------------------ENKSGGFIQN-MEVVKLSD---------------- 233
S +D + +G N + + +L +
Sbjct: 252 RKTSQMDLTNDSSSTNLNSSTASSTQGPTGSINTNSISITRLEEESSWRIYSDENDKNIT 311
Query: 234 ---RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
R+TI+R NVI+AL+ ++ + I YE S+ +
Sbjct: 312 NNLRKTISRYTNVIRALSMGEIGITKERIVTGYEASMAF 350
>gi|365765182|gb|EHN06694.1| Rrp4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 359
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 161/305 (52%), Gaps = 41/305 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I TPGE V +M GHGT+ D +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 54 IXTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVV 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG NGY+W+
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWL 233
Query: 212 ------------------SAIDENKSGGFIQ-NMEVVKLSD------------------- 233
S+I G + N + +L +
Sbjct: 234 RKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNI 293
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV---LCTAQK 290
R+ I R NVIKALA ++ + I AYE S+ YS L ++ ++ + + TA+K
Sbjct: 294 RQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEK 353
Query: 291 LQTLG 295
++ G
Sbjct: 354 MRGNG 358
>gi|290462865|gb|ADD24480.1| Exosome complex exonuclease RRP4 [Lepeophtheirus salmonis]
Length = 196
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 132/187 (70%), Gaps = 7/187 (3%)
Query: 10 IEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEE------IKASVG 63
++I LA++ P ++ E T +TPG+ + GYM GHGT+ DE + ASVG
Sbjct: 1 MDISLANEWEKPPEDVDEAT-TFVTPGDIITRESGYMRGHGTYASDEGNEEKECLIASVG 59
Query: 64 GVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPG 123
GVV++VN+L+ V + S Y GEIG+V+VGR+ +Q ++W V+ NS L++ LHL+SVNLPG
Sbjct: 60 GVVKRVNKLIRVLPLRSTYQGEIGDVLVGRIVEVQQKRWKVEVNSRLDAILHLSSVNLPG 119
Query: 124 GEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPS 183
GE RRRS +DE MR +L+EGDLISAE+ + +GS+++HTRSLKYGKL G ++ V PS
Sbjct: 120 GELRRRSSEDELSMRTYLREGDLISAEVQTLYKDGSMSIHTRSLKYGKLEGGTVIKVSPS 179
Query: 184 LIRRSKS 190
LI+R K+
Sbjct: 180 LIKRQKT 186
>gi|365984541|ref|XP_003669103.1| hypothetical protein NDAI_0C02000 [Naumovozyma dairenensis CBS 421]
gi|343767871|emb|CCD23860.1| hypothetical protein NDAI_0C02000 [Naumovozyma dairenensis CBS 421]
Length = 364
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 147/280 (52%), Gaps = 42/280 (15%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + SRY E G+ +V
Sbjct: 55 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGAVSRVNRLLSVIPLKSRYSPETGDHIV 114
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRV + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 115 GRVAEVGNKRWRVDIGGKQHAILMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 174
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI RSK+H NL V+LG NG++W+
Sbjct: 175 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRSKNHTHNLPGNITVVLGVNGFIWL 234
Query: 212 SAIDE-----------------------NKSGGFIQNMEVVKLSD--------------- 233
+ +G N + +L +
Sbjct: 235 RKTSQMDLVRDAPPGGSTGATSSQRSTAGPTGAVSLNPSITRLEEESSWQIYSDENDPTI 294
Query: 234 ----RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
R+TI R NVIKALA ++ + + AYE S+ Y
Sbjct: 295 SSNIRKTICRYANVIKALAFCEIGITQERVISAYEASMAY 334
>gi|367001080|ref|XP_003685275.1| hypothetical protein TPHA_0D02030 [Tetrapisispora phaffii CBS 4417]
gi|357523573|emb|CCE62841.1| hypothetical protein TPHA_0D02030 [Tetrapisispora phaffii CBS 4417]
Length = 365
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 151/281 (53%), Gaps = 41/281 (14%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + +M GHGT+ + +S G + +VN+L+SV + RY E G+ +V
Sbjct: 55 IVTPGELITEDPIWMRGHGTYFLENSTYSSAAGTISRVNRLLSVIPLKGRYTPETGDHIV 114
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + +++W VD + L L SVNLPGG RR+S DE MR FLKEGD+++AE+
Sbjct: 115 GRITDVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRTFLKEGDVLNAEV 174
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+L+ VP SL+ RSK+H NL V+LG NG++W+
Sbjct: 175 QSLFQDGSASLHTRSLKYGKLRDGLLIQVPSSLVVRSKNHTHNLPGNVTVLLGVNGFIWL 234
Query: 212 ------------------SAIDENKSGGFIQN----MEVVKLSD---------------- 233
S I E +G N + + +L +
Sbjct: 235 RKTSKMDVARETPSAGPASDISEGPTGAKSLNPTNSVSITRLEEESSWKIYSDKNDPSIT 294
Query: 234 ---RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYST 271
R+ I+R NVIKALA ++ L I YE S+ YS
Sbjct: 295 PSIRQNISRYANVIKALAFCEIGLTHERIVIGYEASIAYSN 335
>gi|50549949|ref|XP_502446.1| YALI0D05511p [Yarrowia lipolytica]
gi|49648314|emb|CAG80634.1| YALI0D05511p [Yarrowia lipolytica CLIB122]
Length = 333
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 149/264 (56%), Gaps = 20/264 (7%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPG+ + +M GHGT+ + +S GVV K N+L+SV + RY +IG+ VV
Sbjct: 55 LVTPGKLITEDPIWMRGHGTYSVGNKTFSSTAGVVTKTNKLLSVVPLRGRYQPQIGDHVV 114
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + ++W VD + + L L SVNLPGG RR+ DE MR FLKEGDLI+ E+
Sbjct: 115 GRIVDVGVKRWRVDIGAKQLAVLQLGSVNLPGGILRRKQESDELQMRGFLKEGDLINTEV 174
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW- 210
+ +GS LHTRSL+YGKL G+L+TVP +LI R+KSH L G ++G NG++W
Sbjct: 175 QSLYQDGSAALHTRSLRYGKLRNGVLITVPSALIVRAKSHVHQLPGGVDTVVGVNGWIWL 234
Query: 211 ----------------VSAIDENKS--GGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
++ ++E S + E + S RE I R N KALA ++V
Sbjct: 235 CMAWANSHLTRENTTSITRLEEEASLTETYSDKNEDIPRSVRENIARYANCFKALAANEV 294
Query: 253 MLFDTSIQYAYEESLKY-STYDLL 275
+ + + AYE SL Y S DL+
Sbjct: 295 GITEDRVIAAYEASLVYPSAGDLI 318
>gi|343425570|emb|CBQ69105.1| related to RRP4-3`-5` exoribonuclease [Sporisorium reilianum SRZ2]
Length = 404
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 125/188 (66%), Gaps = 7/188 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I G ++ +M GHGTF + +EI +S+ G VE+VN+L+SVR SRY E+G++
Sbjct: 101 IAVAGASIASSHVFMKGHGTFLSTNTDEILSSMCGTVERVNKLISVRPARSRYAAEVGDL 160
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GRVT + ++W VD N+ +S+L L+S+NLPGG QRR+ DE MR F +E DL+ A
Sbjct: 161 VIGRVTEVGPKRWKVDINAKTDSSLQLSSINLPGGVQRRKVESDELQMRHFFQENDLLVA 220
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCN-----LACGAQVILG 204
E+ + + S LHTRSL+YGKL G+L+T P+LI+R KSHF + LA +I+G
Sbjct: 221 EVQMMFQDNSSALHTRSLRYGKLKNGVLVTAAPNLIQRLKSHFVHLRNDELAVDVDLIIG 280
Query: 205 CNGYVWVS 212
NGY+W++
Sbjct: 281 LNGYIWIA 288
>gi|366996124|ref|XP_003677825.1| hypothetical protein NCAS_0H01670 [Naumovozyma castellii CBS 4309]
gi|342303695|emb|CCC71477.1| hypothetical protein NCAS_0H01670 [Naumovozyma castellii CBS 4309]
Length = 370
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 150/284 (52%), Gaps = 46/284 (16%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + SRY E G+ +V
Sbjct: 57 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKSRYSPETGDHIV 116
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 117 GRIAEVGNKRWRVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 176
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG NGY+W+
Sbjct: 177 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWL 236
Query: 212 ---SAID------------------------ENKSGGFIQNMEVVKLSD----------- 233
S +D +G N + +L +
Sbjct: 237 RKTSQMDITRDAPPGGSTGGGSSTSSGQNSTNGPTGAVSLNPSITRLEEESSWQIYSDEN 296
Query: 234 --------RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
R+TI+R NVIKALA ++ + I AYE S+ Y
Sbjct: 297 DPSITANIRKTISRYANVIKALAYCEIGITQERIISAYEVSMAY 340
>gi|443900416|dbj|GAC77742.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp4 [Pseudozyma
antarctica T-34]
Length = 408
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 125/188 (66%), Gaps = 7/188 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I G ++ +M GHGTF + EEI +S+ G VE+VN+L+SVR SRY E+G++
Sbjct: 96 IAVAGTSIASSHVFMKGHGTFLSTNSEEILSSMCGTVERVNKLISVRPARSRYAAEVGDL 155
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GR+T + ++W VD N+ +SAL L+S+NLPGG QRR+ DE MR F +E DL+ A
Sbjct: 156 VIGRITEVGPKRWKVDINAKTDSALQLSSINLPGGIQRRKVESDELQMRNFFQEHDLLVA 215
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC-----NLACGAQVILG 204
E+ + + S LHTRSL+YGKL G+L+T P+LI+R KSHF +L+ +I+G
Sbjct: 216 EVQMMFQDNSSALHTRSLRYGKLKNGVLVTASPNLIQRLKSHFVHLRNDDLSLDVDLIIG 275
Query: 205 CNGYVWVS 212
NGY+W++
Sbjct: 276 LNGYIWIA 283
>gi|71021183|ref|XP_760822.1| hypothetical protein UM04675.1 [Ustilago maydis 521]
gi|46100196|gb|EAK85429.1| hypothetical protein UM04675.1 [Ustilago maydis 521]
Length = 470
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 125/188 (66%), Gaps = 7/188 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I G ++ +M GHGTF D +EI +S+ G VE+VN+L+SVR SRY E+G++
Sbjct: 158 IAVTGGSIASSHVFMKGHGTFLSADTDEILSSMCGTVERVNKLISVRPARSRYAAEVGDL 217
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GR+T + ++W VD N+ +SAL L+S+NLPGG QRR+ DE MR F +E DL+ A
Sbjct: 218 VIGRITEVGPKRWKVDINAKTDSALQLSSINLPGGIQRRKIESDELQMRSFFQENDLLVA 277
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA-----CGAQVILG 204
E+ + + S LHTRSL+YGKL GIL+TV P+LI+R KSHF +L +++G
Sbjct: 278 EVQMMFQDNSSALHTRSLRYGKLRNGILVTVSPNLIQRLKSHFVHLKHDELQLDVDLVIG 337
Query: 205 CNGYVWVS 212
NGY+W++
Sbjct: 338 LNGYIWIA 345
>gi|164663335|ref|XP_001732789.1| hypothetical protein MGL_0564 [Malassezia globosa CBS 7966]
gi|159106692|gb|EDP45575.1| hypothetical protein MGL_0564 [Malassezia globosa CBS 7966]
Length = 366
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 128/188 (68%), Gaps = 7/188 (3%)
Query: 32 ILT-PGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
ILT PG+ V YM GHG + P EI +S+ G+VE+VN+L+SVR + +RY E+G+
Sbjct: 61 ILTMPGQGVAPSTQYMRGHGCYIDPSSSEIVSSMSGIVERVNKLISVRPIRTRYRAEVGD 120
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
+VVGR+ +QS++W VD + +++L L+SVNLPGG QR++ DE MR F +EGDL+
Sbjct: 121 LVVGRIMEVQSRRWKVDIGTTTDASLQLSSVNLPGGVQRKKLESDELQMRMFFQEGDLVV 180
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL----ACGAQVILG 204
AE+ + +GS+ LHTRSL+YGKL G L +PP L+RR KSHF L G ++LG
Sbjct: 181 AEVQSVFQDGSVGLHTRSLRYGKLRNGALAVIPPVLVRRHKSHFITLDKLPEHGIDLLLG 240
Query: 205 CNGYVWVS 212
NGYVWVS
Sbjct: 241 LNGYVWVS 248
>gi|45184790|ref|NP_982508.1| AAL034Cp [Ashbya gossypii ATCC 10895]
gi|44980136|gb|AAS50332.1| AAL034Cp [Ashbya gossypii ATCC 10895]
gi|374105707|gb|AEY94618.1| FAAL034Cp [Ashbya gossypii FDAG1]
Length = 351
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 154/296 (52%), Gaps = 43/296 (14%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + +M GHGT+ + + +SV G V +VN+L+SV RY E G+ +V
Sbjct: 42 IMTPGELITDDPVWMRGHGTYFLENKTYSSVAGTVSRVNRLLSVIPWRGRYTPETGDHIV 101
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 102 GRIVEVGNKRWKVDIGGKQHAVLMLGSVNLPGGVLRRKSESDELQMRSFLKEGDLLNAEV 161
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS LHTRSLKYGKL G+ + VP SLI RSK+H NL VILG NG+VW+
Sbjct: 162 QSLFQDGSSALHTRSLKYGKLRNGMFVRVPSSLIVRSKNHTHNLPGNVTVILGVNGFVWL 221
Query: 212 ---SAID--ENKSGGFI--------------------QNMEVVKLSD------------- 233
S ID N G + ++ + +L +
Sbjct: 222 RKTSDIDLSNNHHGSTVSGKAANTLAGVASGEYKPGANSVSITRLEEESSWEIYSDKNDP 281
Query: 234 -----RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV 284
R TI+R NVIK LA ++ + + I +YE S+ Y L +D +
Sbjct: 282 IPSNIRNTISRYANVIKILAHCEIGITEARIVASYEASMAYGNVGSLIETETMDAI 337
>gi|238506042|ref|XP_002384223.1| exosome complex exonuclease Rrp4, putative [Aspergillus flavus
NRRL3357]
gi|220690337|gb|EED46687.1| exosome complex exonuclease Rrp4, putative [Aspergillus flavus
NRRL3357]
Length = 372
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 156/269 (57%), Gaps = 23/269 (8%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E + T ++TPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 65 LVEGTDITSGVVTPGEIVTDDPQWMRGHGTYINPLSTSIIATVAGTVQKTNKLLSVQPLR 124
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 125 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 184
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP------PSLIR-RSKSHF 192
F EGDL+ AE+ + ++G+ +LHTRSLKYGKL G+ L V S++R R +
Sbjct: 185 FFSEGDLVVAEVQTVHSDGAASLHTRSLKYGKLRNGVFLAVTGTGGSGASIVRSRRQVWT 244
Query: 193 CNLACGA---QVILGCNGYVWVSAIDENKSGGF----------IQNMEVVKLSDRETITR 239
N A G VILG NGY+W+S ++ + QN ++ + RE I R
Sbjct: 245 VNTANGGGDVDVILGVNGYIWISKHADDTAAACSTTDSVSIYSSQNDDIPPQTRRE-IAR 303
Query: 240 LNNVIKALAESKVMLFDTSIQYAYEESLK 268
L I+ L + V + + ++ AYE SL+
Sbjct: 304 LAQCIRVLVQGGVRVDEETVMSAYEASLQ 332
>gi|150865065|ref|XP_001384122.2| hypothetical protein PICST_31470 [Scheffersomyces stipitis CBS
6054]
gi|149386321|gb|ABN66093.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 347
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 155/287 (54%), Gaps = 43/287 (14%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIG 87
F I+TPGE V +M GHGT+ ++ +SV G + +VN+L+SV + RY E G
Sbjct: 36 FKQSIVTPGELVTDDPIWMKGHGTYFLEDRTFSSVAGNISRVNRLLSVIPLKGRYQPETG 95
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
+ +VGR+T + +++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL+
Sbjct: 96 DHIVGRITEVGNKRWKVDIGTKQDAVLMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLL 155
Query: 148 SAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNG 207
+AE+ I G +LHTRSLKYGKL G+ L VP SL+ +SK+H +L ++LG NG
Sbjct: 156 NAEVQTIFNNGIASLHTRSLKYGKLRNGMFLKVPSSLVIKSKNHSYDLPGNVSIVLGVNG 215
Query: 208 YVWV-----------------------SAIDENKSGGFIQ-NMEVVKL------------ 231
Y+W+ +++D S Q ++ + +L
Sbjct: 216 YIWLYKTSTGINSATNTSVTSNTNMFRASVDTTGSYAIGQGSVSITRLEEESSWEIYSDK 275
Query: 232 -------SDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYST 271
S R ITR NNV++A++ ++ + + I YE SL YS
Sbjct: 276 NDPNISNSVRSNITRYNNVLRAMSFCELGITEQRIIMGYEASLSYSN 322
>gi|448105627|ref|XP_004200541.1| Piso0_003132 [Millerozyma farinosa CBS 7064]
gi|448108747|ref|XP_004201172.1| Piso0_003132 [Millerozyma farinosa CBS 7064]
gi|359381963|emb|CCE80800.1| Piso0_003132 [Millerozyma farinosa CBS 7064]
gi|359382728|emb|CCE80035.1| Piso0_003132 [Millerozyma farinosa CBS 7064]
Length = 341
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 149/280 (53%), Gaps = 40/280 (14%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
+ ++TPGE V +M GHGT+ D + +SV G V +VN+L+SV + RY E G+
Sbjct: 32 NSLVTPGELVTDDPVWMKGHGTYFLDNKTYSSVAGSVSRVNRLLSVIPLRGRYQPETGDH 91
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+T + ++W VD ++ L L SVNLPGG RR+S DE MR FLKEGDL++A
Sbjct: 92 VVGRITEVGPKRWKVDIGGKQDAVLMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNA 151
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ I + GS +LHTRSLKYGKL GI L VP +LI +SK+H +L +ILG NGY+
Sbjct: 152 EVQSIFSNGSASLHTRSLKYGKLRNGIFLKVPSNLIIKSKNHSFDLPGNISIILGVNGYI 211
Query: 210 WVSAI-----------DENKS-------GGFIQNMEVVKL-------------------- 231
W+ NK+ GG+ V +
Sbjct: 212 WLYKTPSSGRKNNINASSNKAQASFDAKGGYNPGQGSVSITRLEEESSWEIYSDKNDPNI 271
Query: 232 --SDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
S R+ I N+IKAL+ ++ + + I YE SL Y
Sbjct: 272 TGSVRKNIASYYNIIKALSHGELGITEQRIIMGYEASLAY 311
>gi|403214403|emb|CCK68904.1| hypothetical protein KNAG_0B04690 [Kazachstania naganishii CBS
8797]
Length = 365
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 150/285 (52%), Gaps = 46/285 (16%)
Query: 31 PILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
PI+TPGE + +M GHGT+ D +SV G V KVN+L+SV + RY E G+ V
Sbjct: 51 PIVTPGELITDDPVWMRGHGTYFLDNVTYSSVVGTVSKVNKLLSVVPLKGRYAPETGDHV 110
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGR++ + +++W VD + + L L SVNLPGG RR+S DE MR FLKEGDL++AE
Sbjct: 111 VGRISEVGNKRWKVDIGAKQHAVLMLGSVNLPGGILRRKSENDELQMRSFLKEGDLLNAE 170
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ + +GS +LHTRSLKYGKL G V SLI +SK+H NL V+LG NGY+W
Sbjct: 171 VQSLFQDGSASLHTRSLKYGKLRDGQFCGVASSLIVKSKNHTHNLPGNVTVVLGVNGYIW 230
Query: 211 VS-------AIDENKSGGF--------------------IQNMEVVKL---------SDR 234
+ A D N G N+ + +L SD+
Sbjct: 231 LRKTSQMDLARDLNSVGAAGGASTPKGTNGPTGAVSLNPTTNVSITRLEEESSWQIYSDK 290
Query: 235 E----------TITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
TITR NVIKALA ++ + I AYE S+ Y
Sbjct: 291 NDPNISDSIKLTITRYANVIKALAFCEIGITQERIISAYESSMVY 335
>gi|68486193|ref|XP_709945.1| likely exosome component Rrp4p [Candida albicans SC5314]
gi|68486254|ref|XP_712984.1| likely exosome component Rrp4p [Candida albicans SC5314]
gi|46434409|gb|EAK93819.1| likely exosome component Rrp4p [Candida albicans SC5314]
gi|46434442|gb|EAK93851.1| likely exosome component Rrp4p [Candida albicans SC5314]
Length = 304
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 138/238 (57%), Gaps = 18/238 (7%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
+ I+TPGE + +M GHGT+ +++ +SV G + +VN+L+SV + RY E G+
Sbjct: 51 NSIVTPGELITEDPTWMKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLRGRYSPETGDH 110
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GR+T + +++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL++
Sbjct: 111 VIGRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNC 170
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ I G +LHTRSLKYGKL GI L +P LI ++K+H +L ++LG NGY+
Sbjct: 171 EVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSPLIVKTKNHAFDLPGNVSIVLGTNGYI 230
Query: 210 WVSAID------ENKSGG------------FIQNMEVVKLSDRETITRLNNVIKALAE 249
W+ EN + G + E + + R I + N+IK+LAE
Sbjct: 231 WLYKTPKINKSLENNTPGITRLEEESSWEIYSDKNEFIDVQTRNNIAKYYNIIKSLAE 288
>gi|238881488|gb|EEQ45126.1| exosome complex exonuclease RRP4 [Candida albicans WO-1]
Length = 304
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 138/238 (57%), Gaps = 18/238 (7%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
+ I+TPGE + +M GHGT+ +++ +SV G + +VN+L+SV + RY E G+
Sbjct: 51 NSIVTPGELITEDPTWMKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLRGRYSPETGDH 110
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GR+T + +++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL++
Sbjct: 111 VIGRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNC 170
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ I G +LHTRSLKYGKL GI L +P LI ++K+H +L ++LG NGY+
Sbjct: 171 EVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSPLIVKTKNHAFDLPGNVSIVLGTNGYI 230
Query: 210 WVSAID------ENKSGG------------FIQNMEVVKLSDRETITRLNNVIKALAE 249
W+ EN + G + E + + R I + N+IK+LAE
Sbjct: 231 WLYKTPKINKSLENNTPGITRLEEESSWEIYSDKNEFIDVQTRNNIAKYYNIIKSLAE 288
>gi|363750642|ref|XP_003645538.1| hypothetical protein Ecym_3224 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889172|gb|AET38721.1| Hypothetical protein Ecym_3224 [Eremothecium cymbalariae
DBVPG#7215]
Length = 352
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 151/281 (53%), Gaps = 43/281 (15%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ + + ++V G V +VN+L+SV RY E G+ ++
Sbjct: 43 IVTPGEMVTDDPIWMRGHGTYFLENKTYSAVVGTVSRVNRLLSVIPWKGRYSPETGDHII 102
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 103 GRIVEVGNKRWKVDIGGKQFAILMLGSVNLPGGVLRRKSESDELQMRSFLKEGDLLNAEV 162
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW- 210
+ +GS +LHTRSLKYGKL G+ + VP SLI RSK+H NL VILG NG++W
Sbjct: 163 QSLFADGSASLHTRSLKYGKLRNGVFINVPSSLIVRSKNHTHNLPGNVTVILGVNGFIWL 222
Query: 211 ------------------------VSAIDENKSGGFIQNMEVVKLSD------------- 233
+S I +++ I ++ + +L +
Sbjct: 223 RKTSEMDSSSNSYGSVVTGKNAATISGIASSENTPGINSVSITRLEEESSWEIYSDKNDP 282
Query: 234 -----RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
+ TI + NVIKALA ++ + +T + AYE S Y
Sbjct: 283 ISTNLKNTIAKYANVIKALAYCEIGITETRVIAAYEASTAY 323
>gi|320583720|gb|EFW97933.1| 3'-5' exoribonuclease [Ogataea parapolymorpha DL-1]
Length = 328
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 157/289 (54%), Gaps = 40/289 (13%)
Query: 27 EFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
E ++TPGE + +M GHGT+ +++ +SV G V KVN+L+SV RY E
Sbjct: 17 EVGSSVVTPGELITDDPTWMRGHGTYFLNDKTYSSVAGTVLKVNKLLSVVPFKGRYSPET 76
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G+ +VGR+ + ++W VD ++ L L SVNLPGG RR+S DE MR FLKEGDL
Sbjct: 77 GDHLVGRIIDVGQKRWKVDIGGEHDAVLMLGSVNLPGGILRRKSESDELQMRNFLKEGDL 136
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCN 206
++AE+ + ++GS +LHTRSLKYGKL G+ + VP LI R+K+H +L +ILG N
Sbjct: 137 LNAEVQSLFSDGSASLHTRSLKYGKLRNGVFVAVPSKLIVRAKNHSHDLPGNVSIILGVN 196
Query: 207 GYVWV------SAIDENKS------------GGFIQ----NMEVVKL------------- 231
GY W+ SA D + S G+ Q ++ + +L
Sbjct: 197 GYCWIYKTPLSSAADHSASTAKTNAELSSAASGYYQPGQGSVSITRLEQESSWDIYSDKN 256
Query: 232 -----SDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLL 275
S ++TI+R N + +L++ + + + + AYE SL Y +LL
Sbjct: 257 DALSASIKDTISRYKNCLLSLSQCNIGINEVRLVRAYEISLGYGDTNLL 305
>gi|241954570|ref|XP_002420006.1| exosome complex exonuclease, putative; ribosomal RNA processing
protein, putative [Candida dubliniensis CD36]
gi|223643347|emb|CAX42222.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
Length = 302
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 138/238 (57%), Gaps = 18/238 (7%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
+ I+TPGE + +M GHGT+ +++ +SV G + +VN+L+SV + RY E G+
Sbjct: 49 NSIVTPGELITEDPTWMKGHGTYFLNDKTYSSVAGSISRVNRLLSVIPLRGRYSPETGDH 108
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GR+T + +++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL++
Sbjct: 109 VIGRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNC 168
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ I G +LHTRSLKYGKL GI + +P LI ++K+H +L ++LG NGY+
Sbjct: 169 EVQTIFNNGIASLHTRSLKYGKLRNGIFIKIPSPLIVKTKNHAFDLPGNVSIVLGTNGYI 228
Query: 210 WVSAID------ENKSGG------------FIQNMEVVKLSDRETITRLNNVIKALAE 249
W+ EN + G + E + + R I + N+IK+LAE
Sbjct: 229 WLYKTPKINKSLENNTPGITRLEEESSWEIYSDKNEFIDVQTRNNIAKYYNIIKSLAE 286
>gi|119608347|gb|EAW87941.1| exosome component 2, isoform CRA_a [Homo sapiens]
Length = 192
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 114/141 (80%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKL 172
+ ++G+++LHTRSLKYGK+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKM 166
>gi|300175432|emb|CBK20743.2| unnamed protein product [Blastocystis hominis]
Length = 189
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 112/168 (66%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
++ GHG + D ++ ASV GVVE+VN+L+SVR++ SRYI +IG+VVV RV G+ W +
Sbjct: 5 FLRGHGVYVKDGKMIASVCGVVERVNKLISVRSLKSRYIPKIGDVVVARVLGIVGSSWDM 64
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D S S L + S+ LPGGE RRR+ D MR D+ISAE+ QI+ +G LHT
Sbjct: 65 DIASYQNSVLSINSILLPGGEHRRRNDADVLQMRSIFVPNDIISAEVQQINRQGESYLHT 124
Query: 165 RSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVS 212
RS KYGKL G+L++VP LI+R HF NL CG I+G NGY+WV+
Sbjct: 125 RSPKYGKLSSGVLVSVPCVLIKRLNQHFVNLPCGVGCIIGNNGYIWVT 172
>gi|328857101|gb|EGG06219.1| hypothetical protein MELLADRAFT_27578 [Melampsora larici-populina
98AG31]
Length = 256
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDE-EIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
++ PGE + + +M GHGTF +D I++S+ G +E++N+LVSVR + RY E+G++V
Sbjct: 6 LVVPGELIASSKFWMRGHGTFVEDGMTIRSSLAGTIERINKLVSVRGLRGRYRPEVGDLV 65
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
+GR+ +QS++W VD + L L SVNLPGG QRR+ DE MR F +EGDL+ AE
Sbjct: 66 IGRIAEVQSKRWKVDAGGRQHAVLMLGSVNLPGGVQRRKLESDELQMRFFFQEGDLLVAE 125
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACG 198
+ +G+++LHTRSLKYGKL G+L+ VPP LI R KSHF L+CG
Sbjct: 126 VQAFFGDGAMSLHTRSLKYGKLRNGLLVKVPPQLIHRLKSHFHTLSCG 173
>gi|403365220|gb|EJY82389.1| Rrp4-PA [Oxytricha trifallax]
Length = 309
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 128/194 (65%), Gaps = 7/194 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ V+ EG++ GHGT+ D +I AS+ G+V ++++++ VR + + + +IG+V++
Sbjct: 17 IVVPGDYVD--EGFIAGHGTYEQDGKIYASLAGIVHRIDKVICVRPLKTSFKPDIGDVII 74
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ +++++W VD NS + L+LT++NLPGG QRRRS +D+ MR F KE D+IS E+
Sbjct: 75 GRIVSVENKRWAVDINSYQHAVLNLTNINLPGGLQRRRSEEDKMQMRSFFKENDIISGEV 134
Query: 152 HQIST-EGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSH----FCNLACGAQVILGCN 206
IST +G + + TR+LKYGKL G ++ V + IRR KSH F VI+G N
Sbjct: 135 QGISTHDGKINMQTRNLKYGKLMNGFMVKVDHNYIRRMKSHILEFFAEQWQPIGVIIGTN 194
Query: 207 GYVWVSAIDENKSG 220
GYVW+ D+ S
Sbjct: 195 GYVWIYLPDKQASN 208
>gi|388857654|emb|CCF48803.1| related to RRP4-3`-5` exoribonuclease [Ustilago hordei]
Length = 408
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 129/202 (63%), Gaps = 12/202 (5%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I G ++ +M GHGTF + +EI +S+ G VE+VN+L+SVR SRY E+G++
Sbjct: 100 IAVAGTSIASSHVFMKGHGTFLSSNSDEILSSMCGTVERVNKLISVRPARSRYAAEVGDL 159
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GR+T + ++W VD N+ +SAL L+S+NLPGG QRR+ DE MR F +E DL+ A
Sbjct: 160 VIGRITEVGPKRWKVDINAKTDSALQLSSINLPGGIQRRKVESDELQMRNFFQENDLLVA 219
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCN-----LACGAQVILG 204
E+ + + S LHTRSL+YGKL G+L+T P+LI+R KSHF + L+ +I+G
Sbjct: 220 EVQMMFQDNSSALHTRSLRYGKLKNGLLVTASPNLIQRLKSHFVHLKDDDLSLDVDLIIG 279
Query: 205 CNGYVWVSAI-----DENKSGG 221
NGY+W++ N SGG
Sbjct: 280 LNGYIWIAKHLPYNQPSNSSGG 301
>gi|149237360|ref|XP_001524557.1| exosome complex exonuclease RRP4 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452092|gb|EDK46348.1| exosome complex exonuclease RRP4 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 374
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 161/303 (53%), Gaps = 47/303 (15%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
+ I+TPGE + +M GHGT+ +++ +SV G + +VN+L+SV + +Y E G+
Sbjct: 61 NAIVTPGELITEDPMWMKGHGTYFINDKTYSSVVGNILRVNRLLSVNPIRGKYQPETGDH 120
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+T + +++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL++
Sbjct: 121 VVGRITEVANKRWKVDIGTKQDAVLMLGSVNLPGGILRRKSESDELQMRNFLKEGDLLNC 180
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ I G +LHTRSLKYGKL GI L +P SL+ +SK+H +L VILG NGY+
Sbjct: 181 EVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSSLVIKSKNHSYDLPGNVSVILGVNGYI 240
Query: 210 WV------------SAIDE-----NKSGGFIQ-----------NMEVVKLSD-------- 233
W+ SA ++ N +G I ++ + +L +
Sbjct: 241 WLYKTKASVFSANTSAKNQGSTTVNPNGSKITQGVKDYTPGLGSVSITRLEEESSWEIYS 300
Query: 234 ----------RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDL 283
R I R NVIKALA ++ + + I YE SL ++ L ++L
Sbjct: 301 DKNDEISTLIRNNIARYYNVIKALAHGELGITEQRIIMGYEASLSFANVGSLVDRESMEL 360
Query: 284 VLC 286
LC
Sbjct: 361 -LC 362
>gi|255721219|ref|XP_002545544.1| exosome complex exonuclease RRP4 [Candida tropicalis MYA-3404]
gi|240136033|gb|EER35586.1| exosome complex exonuclease RRP4 [Candida tropicalis MYA-3404]
Length = 293
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 146/253 (57%), Gaps = 21/253 (8%)
Query: 17 DRIDPLIEIHEFTD---PILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLV 73
D+++ IE+ + D I+TPGE + +M GHGT+ +++ +SV G + +VN+L+
Sbjct: 24 DQVNVDIEMSDGQDQGNSIVTPGELITEDPIWMKGHGTYFLNDKTYSSVAGNISRVNRLL 83
Query: 74 SVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQD 133
SV + +Y E G+ V+GR+T + +++W VD + ++ L L SVNLPGG RR+S D
Sbjct: 84 SVIPLRGKYSPETGDHVIGRITEVGNKRWKVDIGAKQDAVLMLGSVNLPGGVLRRKSESD 143
Query: 134 EEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC 193
E MR FLKEGDL++ E+ I G +LHTRSLKYGKL GI L VP SLI +SK+H
Sbjct: 144 ELQMRNFLKEGDLLNCEVQTIFNNGMASLHTRSLKYGKLRNGIFLKVPSSLIVKSKNHAF 203
Query: 194 NLACGAQVILGCNGYVW-----------------VSAIDENKSGG-FIQNMEVVKLSDRE 235
+L ++LG NGY W ++ ++E S + E + + R
Sbjct: 204 DLPGNVSIVLGSNGYTWLYKTPKTNKSKESSAPGITRLEEESSWEIYSDKNEFIDVQTRH 263
Query: 236 TITRLNNVIKALA 248
I + N++K+LA
Sbjct: 264 NIAKYYNILKSLA 276
>gi|302498405|ref|XP_003011200.1| hypothetical protein ARB_02480 [Arthroderma benhamiae CBS 112371]
gi|291174749|gb|EFE30560.1| hypothetical protein ARB_02480 [Arthroderma benhamiae CBS 112371]
Length = 368
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 149/280 (53%), Gaps = 40/280 (14%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTF----PDDEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
TD I+TPGE + +M GHGTF P I A+V G V K N+L+SV + +RY
Sbjct: 44 ITDTIVTPGEIITDDPQWMRGHGTFTPAVPATTNIIATVAGTVLKTNKLLSVYPLRARYT 103
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
EIG++VVGR+ +QS++W VD ++ L + L L+++NLPGG R+R+ DE +R F E
Sbjct: 104 PEIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNE 163
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----------PSLIRRSKSHFC 193
GDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V + + RS+
Sbjct: 164 GDLVVAEVQTVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVW 223
Query: 194 NL--ACGA--QVILGCNGYVWVSA----IDENKSGGFIQNMEVVKLSD------------ 233
+ A G VILG NGY+W+S E S GF + +L D
Sbjct: 224 TIETAYGGPIDVILGVNGYIWISKHVRDPSEEDSSGFKSKVSFTRLEDMVSTSMYSSQND 283
Query: 234 ------RETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
R+ ITR+ I+ L E V + ++ AYE SL
Sbjct: 284 NIPLATRKEITRIAGCIRVLVEGGVKVDQETVMKAYEASL 323
>gi|405946437|gb|EKC17636.1| Exosome complex exonuclease RRP4 [Crassostrea gigas]
Length = 194
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 117/146 (80%), Gaps = 3/146 (2%)
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
EIG+VV+GR+ +Q ++W V+T++ L+S+L L+SVNLPGGE RRRS +DE+MMRE+LKEG
Sbjct: 39 EIGDVVIGRIIEVQQRRWKVETHAKLDSSLLLSSVNLPGGELRRRSEEDEKMMREYLKEG 98
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILG 204
DLISAE+ + +GSL+LHTRSLKYGKLGQG L+ V PSLI+R K+HF +L CGA +ILG
Sbjct: 99 DLISAEVQSVFADGSLSLHTRSLKYGKLGQGTLVQVSPSLIKRRKTHFHHLPCGATIILG 158
Query: 205 CNGYVWVSAIDE---NKSGGFIQNME 227
NGYVW+ + +++GG+ N++
Sbjct: 159 NNGYVWICPTETEEMDQTGGYELNLK 184
>gi|392348779|ref|XP_003750193.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP4-like
[Rattus norvegicus]
Length = 291
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 163/271 (60%), Gaps = 10/271 (3%)
Query: 26 HEFTDPILTPGETVEYLE-GYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
H+ ++ P +T+ + G+M G GT+ +E + V G++ +L + R G
Sbjct: 20 HDSKKHLVVPRDTISTDQTGFMRGRGTYMQEENL--IVCGLLR--TELTNXSVPRKRICG 75
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
+G++VV R+ +Q ++ ++TNS L+S L +S+NLP GE RRRSV++ +R F EG
Sbjct: 76 VVGDIVVARIIDIQQKRRKMETNSRLDSVLLPSSMNLPRGELRRRSVENVWAVRGFFTEG 135
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGIL-LTVPPSLIRRSKSHFCNLACGAQVIL 203
LIS E+ + ++G+++LHTRSLK+GK+GQG+ ++ +L++R K+H NL CGA + L
Sbjct: 136 KLISMEVQAVFSDGAVSLHTRSLKHGKVGQGVXSMSRLSALMKRHKTHCHNLPCGASLFL 195
Query: 204 GCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQ 260
G N ++W+ E+K +GGFI ++E LSD + I+ N + L + M+ D+SI
Sbjct: 196 GNNSFIWIYPTPEHKDEDAGGFIDSLEPGALSDXKVISWFQNCVVLLVTQR-MMPDSSIL 254
Query: 261 YAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
Y E L + D+LK E ++VL T Q+L
Sbjct: 255 YCXETFLVHXIKDILKREEMEEIVLETCQRL 285
>gi|219114437|ref|XP_002176389.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402635|gb|EEC42625.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 308
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 150/249 (60%), Gaps = 28/249 (11%)
Query: 43 EGYMTGHGTFPDDEEIK----ASVGGVVEKVNQLVSVRAM-NSRYIGEIGEVVVGRVTGL 97
+ ++ GHGT+ + E + ASV G+V++VN+LVSV ++ + Y+G++G++VVGR+T +
Sbjct: 37 DSFLRGHGTYVEKTETEDRLVASVLGIVQRVNKLVSVESVSDGVYVGQVGDLVVGRITSV 96
Query: 98 QSQKWVVD-TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST 156
SQ+W V ++AL L+ V+LPGG QR R+ QD MR +L+EGDL+SAE+H+
Sbjct: 97 TSQRWKVRLIPHARDAALPLSGVHLPGGVQRMRTAQDSRDMRSYLQEGDLVSAEVHKTQQ 156
Query: 157 EGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCN-LACGAQVILGCNGYVWV--SA 213
+GSL LHTRS++YGKL G ++TVPP LI R K+HF L QV+ GCNG +W+ +
Sbjct: 157 DGSLLLHTRSVRYGKLENGCIVTVPPKLIPRRKNHFTTILNQQFQVLWGCNGVIWMQRAM 216
Query: 214 IDENKSGGFIQNMEVVKLSDRETI---------------TRLNNVIKALAESKVMLFDTS 258
D +GG E+V+L +R + RL N I+ L + +
Sbjct: 217 PDLEATGG----PELVELQERRRVEHASMPLSPEERRNLARLRNAIECLRLVFCRVTQEA 272
Query: 259 IQYAYEESL 267
++ YE SL
Sbjct: 273 VEQVYETSL 281
>gi|401838217|gb|EJT41947.1| RRP4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 252
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 119/190 (62%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + +M GHGT+ D +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 54 IVTPGELITDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVV 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG NGY+W+
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYMWL 233
Query: 212 SAIDENKSGG 221
+ S G
Sbjct: 234 RKTCQMASSG 243
>gi|302653678|ref|XP_003018662.1| hypothetical protein TRV_07352 [Trichophyton verrucosum HKI 0517]
gi|291182321|gb|EFE38017.1| hypothetical protein TRV_07352 [Trichophyton verrucosum HKI 0517]
Length = 368
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 148/280 (52%), Gaps = 40/280 (14%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTF----PDDEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
TD I+TPGE + +M GHGTF P I A+V G V K N+L+SV + +RY
Sbjct: 44 ITDTIVTPGEIITDDPQWMRGHGTFTPAVPATTNIIATVAGTVLKTNKLLSVYPLRARYT 103
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
EIG++VVGR+ +QS++W VD ++ L + L L+++NLPGG R+R+ DE +R F E
Sbjct: 104 PEIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNE 163
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----------PSLIRRSKSHFC 193
GDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V + + RS+
Sbjct: 164 GDLVVAEVQTVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVW 223
Query: 194 NL--ACGA--QVILGCNGYVWVSA----IDENKSGGFIQNMEVVKLSD------------ 233
+ A G VILG NGY+W+S E S GF + +L D
Sbjct: 224 TIETAYGGPIDVILGVNGYIWISKHVRDPSEEDSSGFKSKVSFTRLEDMVSTSMYSSQND 283
Query: 234 ------RETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
R+ TR+ I+ L E V + ++ AYE SL
Sbjct: 284 NIPLATRKEFTRIAGCIRVLVEGGVKVDQETVMKAYEASL 323
>gi|290984077|ref|XP_002674754.1| predicted protein [Naegleria gruberi]
gi|284088346|gb|EFC42010.1| predicted protein [Naegleria gruberi]
Length = 373
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 137/204 (67%), Gaps = 11/204 (5%)
Query: 22 LIEIHEFTDPILTPGET-VEYLEGYMTGHGTFPDDE-EIKASVGGVVEKVNQLVSVRAMN 79
L EIH I+TPGE VE + GHGT+ +++ ++ +SV GVVE+VN+L+SVR +
Sbjct: 48 LKEIH-----IVTPGEMIVENGSNVLCGHGTYRNEKNQLISSVCGVVEQVNKLISVRPVR 102
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY E+G+V+VGR++ L +KW VD + ++ L L SVN+PGG QRR++ +D+ MR
Sbjct: 103 ARYHAEVGDVIVGRISKLAGKKWKVDVQARQDAMLDLNSVNIPGG-QRRKTYEDQLNMRS 161
Query: 140 FLKEGDLISAEIHQISTEG-SLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACG 198
+E DLI+AE+H+ T+G SL L TRS +YGKL GI++ V PSL++R HF G
Sbjct: 162 IYQEDDLITAEVHR--TDGSSLQLQTRSSRYGKLVNGIMIRVHPSLVKRCTQHFHIFPFG 219
Query: 199 AQVILGCNGYVWVSAIDENKSGGF 222
+VILG NGY+W+S+ ++ G
Sbjct: 220 VRVILGKNGYLWISSSGKSDGDGM 243
>gi|154316807|ref|XP_001557724.1| hypothetical protein BC1G_03821 [Botryotinia fuckeliana B05.10]
gi|347829366|emb|CCD45063.1| hypothetical protein [Botryotinia fuckeliana]
Length = 337
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 149/268 (55%), Gaps = 27/268 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE + +M GHGT+ P EI +V G V+K N+L+SVRA+ +RY EIG++
Sbjct: 48 IVTPGEVITDDPQWMRGHGTYVAPASTEIIGTVAGTVQKTNKLLSVRALRARYTPEIGDL 107
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +QS++W VD + + + L L+++NLPGG QR+R+ DE +R F EGDL+ A
Sbjct: 108 VVGRIIEVQSKRWRVDIGAPVLANLPLSAINLPGGIQRKRTETDELQIRTFFSEGDLLVA 167
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----PSLIRRSKSHFCNLACG-----AQ 200
E+ Q+ +GS +LHTRSLKYGKL G+ + V + R++ +
Sbjct: 168 EVQQLYQDGSASLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRARRQVWTIDTAHNGGKVD 227
Query: 201 VILGCNGYVWVSAIDENKSGGF---------------IQNMEVVKLSDRETITRLNNVIK 245
+ILG NGY+W+ E K G QN E++ + RE I R+ VI+
Sbjct: 228 IILGVNGYIWICKTVEVKEGETSITRIEESVSNAAYSSQNDEIIPETRRE-IARIKGVIQ 286
Query: 246 ALAESKVMLFDTSIQYAYEESLKYSTYD 273
L E + + + + AY +++ D
Sbjct: 287 LLVEEGLRVDEDMVNKAYAAAIEVDEED 314
>gi|392341107|ref|XP_003754250.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP4-like
[Rattus norvegicus]
Length = 274
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 160/265 (60%), Gaps = 10/265 (3%)
Query: 32 ILTPGETVEY-LEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
++ P +T+ G+M G GT+ +E + V G++ +L + R G +G++V
Sbjct: 9 LVVPRDTISTDTTGFMRGRGTYMQEENL--IVCGLLR--TELTNXSVPRKRICGVVGDIV 64
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
V R+ +Q ++ ++TNS L+S L +S+NLP GE RRRSV++ +R F EG LIS E
Sbjct: 65 VARIIDIQQKRRKMETNSRLDSVLLPSSMNLPRGELRRRSVENVWAVRGFFTEGKLISME 124
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGIL-LTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
+ + ++G+++LHTRSLK+GK+GQG+ ++ +L++R K+H NL CGA + LG N ++
Sbjct: 125 VQAVFSDGAVSLHTRSLKHGKVGQGVXSMSRLSALMKRHKTHCHNLPCGASLFLGNNSFI 184
Query: 210 WVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
W+ E+K +GGFI ++E LSD + I+ N + L + M+ D+SI Y E
Sbjct: 185 WIYPTPEHKDEDAGGFIDSLEPGALSDXKVISWFQNCVVLLVTQR-MMPDSSILYCXETF 243
Query: 267 LKYSTYDLLKPESKLDLVLCTAQKL 291
L + D+LK E ++VL T Q+L
Sbjct: 244 LVHXIKDILKREEMEEIVLETCQRL 268
>gi|225710828|gb|ACO11260.1| Exosome complex exonuclease RRP4 [Caligus rogercresseyi]
Length = 183
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 125/180 (69%), Gaps = 13/180 (7%)
Query: 10 IEIMLASDRIDPLIEIHEFTDP---ILTPGETVEYLEGYMTGHGTFP------DDEEIKA 60
++I LAS+ P E DP +TPG+ + G+M GHGT+ D++ + A
Sbjct: 1 MDISLASEWSRP----SEAVDPDLTFVTPGDVITRESGFMRGHGTYAAKDEEGDEDILLA 56
Query: 61 SVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVN 120
S+GG+V++VN+L+ V + S Y GEIG+V+VGR++ +Q ++W VD NS L++ L L+SVN
Sbjct: 57 SLGGIVKRVNKLIRVLPLRSIYQGEIGDVLVGRISEVQQRRWKVDVNSRLDAVLQLSSVN 116
Query: 121 LPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV 180
LPGGE RRRS +DE MR +L+EGDLISAE+ + +GS+++HTRSLKYGKL QG LL V
Sbjct: 117 LPGGELRRRSSEDELAMRSYLREGDLISAEVQTLYKDGSMSIHTRSLKYGKLEQGTLLKV 176
>gi|297843148|ref|XP_002889455.1| ATRRP4 [Arabidopsis lyrata subsp. lyrata]
gi|297335297|gb|EFH65714.1| ATRRP4 [Arabidopsis lyrata subsp. lyrata]
Length = 322
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 138/233 (59%), Gaps = 16/233 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+T V + + ++ GHGT D E+ A+V GVVE+V++LV VR + +RY E+G++VV
Sbjct: 39 IVTDSIPVNHDDAFLKGHGTSEVDGELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVV 98
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRV + ++W V+ N + L L+S+N+P G QRRR+ DE MR E D++ AE+
Sbjct: 99 GRVIEVAQKRWRVELNFTQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEV 158
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVW 210
+GSL L RS KYGKL +G LL V P L++RSK HF + + G +I+GCNG++W
Sbjct: 159 RNFQHDGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIW 218
Query: 211 VS---------AIDENKSGGFIQNMEVVKLSD------RETITRLNNVIKALA 248
V AID+ K I + K + R+TI R+ NVI+ L+
Sbjct: 219 VGEHVEVRDPMAIDDQKDEEMISSSSTGKEQNHIPPETRQTICRIGNVIRVLS 271
>gi|378732188|gb|EHY58647.1| RNA-binding protein Rrp4 and like protein [Exophiala dermatitidis
NIH/UT8656]
Length = 353
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 154/270 (57%), Gaps = 35/270 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEE--IKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+ PGE + +M GHGT+ D I A++ G+++ N+L+SV + +RY EIG++
Sbjct: 55 IVLPGEAITDDTQWMRGHGTYVTDSSTTIIATLAGLLKTTNKLLSVAPLRARYTPEIGDL 114
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q +W VD + L + L L+S+NLPGG RRR+ DE MR + +EGDL+ A
Sbjct: 115 VVGRIVEVQKNRWKVDVAAPLLAQLPLSSINLPGGVLRRRTTADELQMRNYFQEGDLVVA 174
Query: 150 EIHQI-STEGSLTLHTRSLKYGKLGQGILLTVP----PSLIRRSKSHFCNLACGAQ---- 200
E+ QI S++G+ +LHTRSLKYGKL G+ L V + RS+ + GAQ
Sbjct: 175 EVQQIGSSDGTASLHTRSLKYGKLRNGMFLAVSGTGGGGGVIRSRRQVFTINSGAQGGGD 234
Query: 201 --VILGCNGYVWVS-----AIDENKSGGFI----------------QNMEVVKLSDRETI 237
VILG NGY+W+S A D+ + G + QN E+ + + RE I
Sbjct: 235 VDVILGVNGYIWLSKHLEQADDQGRMSGGVSISNLDDVVSSAIYSSQNDEIPEGTRRE-I 293
Query: 238 TRLNNVIKALAESKVMLFDTSIQYAYEESL 267
R++ IK LAE V + + S+ AYE ++
Sbjct: 294 ARISECIKILAEDGVRVDEDSVIKAYEAAV 323
>gi|326470398|gb|EGD94407.1| exosome complex exonuclease Rrp4 [Trichophyton tonsurans CBS
112818]
Length = 368
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 151/280 (53%), Gaps = 40/280 (14%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTF----PDDEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
TD I+TPGE + +M GHGTF P I A+V G V K N+L+SV + +RY
Sbjct: 44 ITDTIVTPGEIITDDPQWMRGHGTFTPAVPPTTNIIATVAGTVLKTNKLLSVYPLRARYT 103
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
EIG++VVGR+ +QS++W VD ++ L + L L+++NLPGG R+R+ DE +R F E
Sbjct: 104 PEIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNE 163
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----------PSLIRRSKSHFC 193
GDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V + + RS+
Sbjct: 164 GDLVVAEVQTVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVW 223
Query: 194 NL--ACGA--QVILGCNGYVWVS-----AIDENKSGG-----------------FIQNME 227
+ A G VILG NGY+W+S +E+ SG + +
Sbjct: 224 TIETAYGGPIDVILGVNGYIWISKHVRDPSEEDSSGSKSKVSFTRLEDMVSTSMYSSQND 283
Query: 228 VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
+ L+ R+ ITR+ I+ L E V + ++ AYE SL
Sbjct: 284 NIPLATRKEITRIAGCIRVLVEGGVKVDQDTVMKAYEASL 323
>gi|326478581|gb|EGE02591.1| exosome complex exonuclease Rrp4 [Trichophyton equinum CBS 127.97]
Length = 368
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 151/279 (54%), Gaps = 40/279 (14%)
Query: 29 TDPILTPGETVEYLEGYMTGHGTF----PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
TD I+TPGE + +M GHGTF P I A+V G V K N+L+SV + +RY
Sbjct: 45 TDTIVTPGEIITDDPQWMRGHGTFTPAVPPTTNIIATVAGTVLKTNKLLSVYPLRARYTP 104
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
EIG++VVGR+ +QS++W VD ++ L + L L+++NLPGG R+R+ DE +R F EG
Sbjct: 105 EIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNEG 164
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----------PSLIRRSKSHFCN 194
DL+ AE+ + +G+ +LHTRSLKYGKL G+ L V + + RS+
Sbjct: 165 DLVVAEVQTVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVWT 224
Query: 195 L--ACGA--QVILGCNGYVWVS-----AIDENKSGG-----------------FIQNMEV 228
+ A G VILG NGY+W+S +E+ SG + +
Sbjct: 225 IETAYGGPIDVILGVNGYIWISKHVRDPSEEDSSGSKSKVSFTRLEDMVSTSMYSSQNDN 284
Query: 229 VKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
+ L+ R+ ITR+ I+ L E V + ++ AYE SL
Sbjct: 285 IPLATRKEITRIAGCIRVLVEGGVKVDQDTVMKAYEASL 323
>gi|15218790|ref|NP_171835.1| exosome complex component RRP4 [Arabidopsis thaliana]
gi|3850568|gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from
Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis
thaliana]
gi|34365689|gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana]
gi|51970606|dbj|BAD43995.1| hypothetical protein [Arabidopsis thaliana]
gi|332189442|gb|AEE27563.1| exosome complex component RRP4 [Arabidopsis thaliana]
Length = 322
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 137/233 (58%), Gaps = 16/233 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+T V + + ++ GHGT D E+ A+V GVVE+V++LV VR + +RY E+G++VV
Sbjct: 39 IVTDSIPVNHDDAFLKGHGTSEVDGELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVV 98
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRV + ++W V+ N + L L+S+N+P G QRRR+ DE MR E D++ AE+
Sbjct: 99 GRVIEVAQKRWRVELNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEV 158
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVW 210
+GSL L RS KYGKL +G LL V P L++RSK HF + + G +I+GCNG++W
Sbjct: 159 RNFQHDGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIW 218
Query: 211 VS---------AIDENKSGGFIQNMEV------VKLSDRETITRLNNVIKALA 248
V AID+ K I + + L R+TI R+ N I+ L+
Sbjct: 219 VGEHVEVRDPMAIDDQKDEEMISSSSTGKEQSHIPLETRQTICRIGNAIRVLS 271
>gi|407921327|gb|EKG14478.1| hypothetical protein MPH_08327 [Macrophomina phaseolina MS6]
Length = 350
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 153/267 (57%), Gaps = 30/267 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTF-PDDE-EIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGETV +M GHGT+ PDD EI ++V G V K N+L+S+ + +RYI EIG++
Sbjct: 52 IVTPGETVTDDPQWMRGHGTYVPDDSTEIISTVAGTVLKTNKLLSITPLRARYIPEIGDL 111
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +QS++W VD ++ + L L+++NLPGG R+R+ DE +R F EGDL+ A
Sbjct: 112 VVGRIVEVQSRRWRVDISAPQLAGLPLSAINLPGGILRKRTAVDELNIRTFFTEGDLLVA 171
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVP--------PSLIRRSKSHFCNLAC--GA 199
E+ I +G+ +LHTRSLKYGKL G L+V + RS+ L+ G
Sbjct: 172 EVQTIHGDGAASLHTRSLKYGKLRNGYFLSVAGTGGGGGRQGGVARSRRQVFTLSSTRGG 231
Query: 200 Q--VILGCNGYVWVSAIDENKSGG----------------FIQNMEVVKLSDRETITRLN 241
+ +ILG NGY+W+S E + G + + +++ R I R+
Sbjct: 232 EIDIILGVNGYIWISKHVEPPNAGKDVSITRIEESVSKEVYSSQNDDIEVDTRREIARVA 291
Query: 242 NVIKALAESKVMLFDTSIQYAYEESLK 268
VI+AL ES + + + ++ YE +L+
Sbjct: 292 GVIRALVESGLRVDEDTVVKGYEAALE 318
>gi|327306313|ref|XP_003237848.1| exosome complex exonuclease Rrp4 [Trichophyton rubrum CBS 118892]
gi|326460846|gb|EGD86299.1| exosome complex exonuclease Rrp4 [Trichophyton rubrum CBS 118892]
Length = 368
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 151/280 (53%), Gaps = 40/280 (14%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTF----PDDEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
TD I+TPGE + +M GHGTF P I A+V G V K N+L+SV + +RY
Sbjct: 44 ITDTIVTPGEIITDDPQWMRGHGTFTPAVPATTNIIATVAGTVLKTNKLLSVYPLRARYT 103
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
EIG++VVGR+ +QS++W VD ++ L + L L+++NLPGG R+R+ DE +R F E
Sbjct: 104 PEIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNE 163
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----------PSLIRRSKSHFC 193
GDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V + + RS+
Sbjct: 164 GDLLVAEVQTVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVW 223
Query: 194 NL--ACGA--QVILGCNGYVWVS-----AIDENKSGG-----------------FIQNME 227
+ A G VILG NGY+W+S +E+ SG + +
Sbjct: 224 TIETAYGGPIDVILGVNGYIWISKHVRDPSEEDSSGSKSKVSFTRLEDMVSTSMYSSQND 283
Query: 228 VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
+ L+ R+ ITR+ I+ L E V + ++ AYE SL
Sbjct: 284 NIPLATRKEITRIAGCIRVLVEGGVKVDQETVMKAYEASL 323
>gi|242814286|ref|XP_002486340.1| exosome complex exonuclease Rrp4, putative [Talaromyces stipitatus
ATCC 10500]
gi|218714679|gb|EED14102.1| exosome complex exonuclease Rrp4, putative [Talaromyces stipitatus
ATCC 10500]
Length = 386
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 151/301 (50%), Gaps = 61/301 (20%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
F I+ PGETV +M GHGTF P I A+V G V K N+L+SV + +RY+ E
Sbjct: 47 FGTGIVVPGETVTNDPQWMRGHGTFTTPLSTSIIATVAGTVSKTNKLLSVHPLRARYMPE 106
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
IG++VVGR+ +Q+++W VD + L + L L+++NLPGG RRR+ DE MR F EGD
Sbjct: 107 IGDLVVGRIVEVQARRWKVDIAAPLLAQLPLSAINLPGGILRRRTSADELQMRNFFVEGD 166
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV------------------------- 180
L+ AE+ + +GS TLHTRSL YGKL G+ + V
Sbjct: 167 LVVAEVQSVHQDGSATLHTRSLSYGKLRNGVFMAVTGTGGSGAAATTSNRSKTSGAGSNI 226
Query: 181 --PPS------LIR-RSKSHFCNLACGA---QVILGCNGYVWVSAIDENKSGG------- 221
PPS ++R R + N A G ++ILG NGY+W+S + +
Sbjct: 227 AAPPSAAAVGGVVRSRRQKWTVNAANGGGDIEIILGVNGYIWISKKADTSTAASSTTEPV 286
Query: 222 --------------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
QN E+ + + RE I RL I+ L ES V + ++ AY SL
Sbjct: 287 SITRMEELATSSIYSSQNDEIPRQTRRE-IARLAGCIRVLVESSVRIEQDTVMSAYNASL 345
Query: 268 K 268
+
Sbjct: 346 E 346
>gi|440297040|gb|ELP89770.1| exosome complex exonuclease RRP4, putative [Entamoeba invadens IP1]
Length = 263
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 139/239 (58%), Gaps = 10/239 (4%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
D +TPG+ V Y EG + G+G ++ ++V G+V ++N+LV V + SRY G++G+V
Sbjct: 9 DKHVTPGDVVYYEEGCIPGNGISVKGQDYVSNVHGLVHRINKLVCVDPIRSRYSGDVGDV 68
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
+VGR+ + W VD N+ + L L+SVNLP G QRRR+ D M+ F +LI A
Sbjct: 69 IVGRIASIGQSAWRVDINAKNNAVLQLSSVNLPDGIQRRRTADDSLNMKSFFDVNELICA 128
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYV 209
E+ +S + L +HTR+ +YGKL G+LL V PSLI+R KSH CG + I G NG++
Sbjct: 129 EVQAMSGQSGLQIHTRNERYGKLSNGMLLVVHPSLIKRCKSHISFFNCGVKFICGMNGFI 188
Query: 210 WVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+++ E + + E ++R+ N ++ L + +++ +++ YE ++K
Sbjct: 189 FITFGKEPEKTN----------AHFEKLSRVANCVRILQDKSMLINGFIVEHLYEMTVK 237
>gi|134079734|emb|CAK40872.1| unnamed protein product [Aspergillus niger]
Length = 357
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 147/271 (54%), Gaps = 24/271 (8%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E +LTPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 49 LVEGTNIGAGVLTPGEIVTDDPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 168
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA 199
F EGDL+ AE+ + ++G +LHTRSLKYGKL G+ L V + + S G
Sbjct: 169 FFSEGDLVVAEVQTVHSDGGASLHTRSLKYGKLRNGVFLAVTGTGGSGASSSSVKANGGG 228
Query: 200 --QVILGCNGYVWVS--AIDENKSGGFIQNMEVVKLSD------------------RETI 237
VILG NGY+W+S A + +N+ + ++ + R I
Sbjct: 229 DVDVILGVNGYIWISKHADGAAAASSTTENVSITRMEEMVSSSIYSSQNDDIPPQTRREI 288
Query: 238 TRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
RL I+ L V + + ++ AYE SL+
Sbjct: 289 ARLAQCIRVLVNGGVRVDEETVMGAYEASLQ 319
>gi|212544972|ref|XP_002152640.1| exosome complex exonuclease Rrp4, putative [Talaromyces marneffei
ATCC 18224]
gi|210065609|gb|EEA19703.1| exosome complex exonuclease Rrp4, putative [Talaromyces marneffei
ATCC 18224]
Length = 380
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 152/309 (49%), Gaps = 59/309 (19%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
F + PGETV +M GHGTF P I A+V G V K N+L+SV + +RY+ E
Sbjct: 49 FGTGTVVPGETVTNDPQWMRGHGTFTTPFSTSIIATVAGTVSKTNKLLSVHPLRARYMPE 108
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
IG++VVGR+ +Q+++W VD + L + L L+++NLPGG RRR+ DE MR F EGD
Sbjct: 109 IGDLVVGRIVEVQARRWKVDIAAPLLAQLPLSAINLPGGILRRRTSADELQMRNFFVEGD 168
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPS---------------------- 183
L+ AE+ + +GS TLHTRSL YGKL G+ +TV +
Sbjct: 169 LVVAEVQSVHQDGSATLHTRSLSYGKLRNGVFMTVTGTGGSGSAVSKKSSAAASNLAAPS 228
Query: 184 -------LIR-RSKSHFCNLACGA---QVILGCNGYVWVSAIDENKSGGFIQNMEVVKLS 232
++R R + N A G ++ILG NGY+W+S + + + + + + ++
Sbjct: 229 SAAAVGGVVRSRRQKWTINAANGGGDIEIILGVNGYIWISKLADGAAASTTETVSITRME 288
Query: 233 D------------------RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY----- 269
+ R I RL I+ L E V + ++ AY SL+
Sbjct: 289 EMATHSIYSSQNNEIPRQTRREIARLAGCIRVLVEGGVRIEHDTVMSAYNASLEVDLEMA 348
Query: 270 -STYDLLKP 277
YD KP
Sbjct: 349 DQEYDAAKP 357
>gi|345562044|gb|EGX45116.1| hypothetical protein AOL_s00173g217 [Arthrobotrys oligospora ATCC
24927]
Length = 350
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 150/270 (55%), Gaps = 33/270 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTF-------PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
I+TPGE V +M GHGT+ + I +S+ G + K N+L+S+RA+ RY+
Sbjct: 52 IVTPGEVVTEDPQWMRGHGTYLSQPLAPGGSQSIVSSLAGTISKTNKLLSIRALKFRYVP 111
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
EIG++VVGR+ +Q+++W VD + + L L+S+NLPGG R+R+ DE +R F EG
Sbjct: 112 EIGDLVVGRILEVQTKRWRVDIAAPHSATLLLSSINLPGGILRKRTSTDELQIRTFFSEG 171
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC--NLACGA--- 199
DL+ AE+ +S +G +LHTRSLKYGKL G+ +T+ ++RR KSH N + G
Sbjct: 172 DLLVAEVQTLSNDGLASLHTRSLKYGKLRNGVFMTIDAGMVRRMKSHVLTMNTSNGGGEV 231
Query: 200 QVILGCNGYVWVSA--------------------IDENKSGGFIQNM-EVVKLSDRETIT 238
+ LG NGY++++ ++E S N+ E + R I
Sbjct: 232 DIYLGVNGYIYIAKHTTPLTESGGPEGKSVSITRLEEEASEAIYSNVNEEISPETRAEIA 291
Query: 239 RLNNVIKALAESKVMLFDTSIQYAYEESLK 268
R+ VI ALA++ V + D + YE +L+
Sbjct: 292 RIACVIGALAKNGVKVDDEMVHLGYEAALE 321
>gi|428166247|gb|EKX35226.1| hypothetical protein GUITHDRAFT_158754 [Guillardia theta CCMP2712]
Length = 280
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 157/265 (59%), Gaps = 28/265 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPG+ + G++ GHGT+ ++ ASV G+V++VN+LVSV + SRY G++G+VVV
Sbjct: 3 VVTPGQEIRSEAGFLRGHGTYVWKGKLIASVAGIVQRVNKLVSVVPLKSRYGGQVGDVVV 62
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRV + ++W +D + + L L+SVNLP GE RRR+ +D+ MR EGDL+SAEI
Sbjct: 63 GRVVEVGQKRWNLDIGAAQSAVLMLSSVNLPEGEHRRRTYEDQLNMRTLFVEGDLVSAEI 122
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK---------SHFCN-------L 195
HQ +GS+++HTRS KYGKL G+L+ VP LIRR+K S F L
Sbjct: 123 HQFFQDGSISVHTRSSKYGKLQNGMLIEVPAYLIRRAKQVLPFSFPSSPFHPPRAPPHVL 182
Query: 196 ACGAQVILGCNGYVWVSAI-----------DE-NKSGGFIQNMEVVKLSDRETITRLNNV 243
+C ++V NGY+W++ + DE K GG E + R+ + R+ N
Sbjct: 183 SCQSEVAAHSNGYIWITHVLPPEAGEAGDMDELEKLGGGRPASEEDMYTCRKCLCRVRNS 242
Query: 244 IKALAESKVMLFDTSIQYAYEESLK 268
I ALA+ + +F TSI YE SLK
Sbjct: 243 ILALAKYHLEIFSTSILDTYESSLK 267
>gi|296086683|emb|CBI32318.3| unnamed protein product [Vitis vinifera]
Length = 320
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 131/225 (58%), Gaps = 16/225 (7%)
Query: 39 VEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQ 98
V Y +G + GHGT D E+ A++ GVVE+VN+LV +R + +RY E G+++VGRVT +
Sbjct: 44 VNYEDGVLKGHGTLDLDGEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIA 103
Query: 99 SQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEG 158
++W +D N ++ L L+S+NLP G QRRR+ DE MR +E D++ AE+ +G
Sbjct: 104 PKRWRLDINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDG 163
Query: 159 SLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWVSAIDEN 217
SL L RS KYGKL +G +LT+ P L++R K H L G +ILGCNG++WV E
Sbjct: 164 SLHLQARSQKYGKLERGQVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEA 223
Query: 218 KSGGFIQNM--------------EVVKLSDRETITRLNNVIKALA 248
K G I++ L R+ I R+ N ++ LA
Sbjct: 224 K-GILIEDQTDKAEQLNTKSSKRTYTSLETRQNICRIANAVRVLA 267
>gi|449453800|ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-like [Cucumis sativus]
Length = 327
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 39 VEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQ 98
+ Y +G + GHGT + E+ AS+ GVVE+VN+L+ VRA+ +RY E+G++VVGRVT +
Sbjct: 44 LNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVA 103
Query: 99 SQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEG 158
++W +D N ++ L L+S+NLP G QRRR+ DE MR +E D+I AE+ + +G
Sbjct: 104 PKRWRLDINYCQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG 163
Query: 159 SLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWV 211
L L RS KYGKL +G LLTV P LI+R K HF +L G +ILGCNG++W+
Sbjct: 164 -LHLQARSQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWI 216
>gi|296804694|ref|XP_002843197.1| exosome complex exonuclease RRP4 [Arthroderma otae CBS 113480]
gi|238845799|gb|EEQ35461.1| exosome complex exonuclease RRP4 [Arthroderma otae CBS 113480]
Length = 368
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 151/285 (52%), Gaps = 41/285 (14%)
Query: 24 EIHEFTDPILTPGETVEYLEGYMTGHGTF----PDDEEIKASVGGVVEKVNQLVSVRAMN 79
+ D I+TPGE + +M GHGTF P I A+V G V K N+L+SV +
Sbjct: 41 RLSRIKDTIVTPGEIITDDPQWMRGHGTFTPAAPATTNIIATVAGTVLKTNKLLSVYPLR 100
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY EIG++VVGR+ +QS++W VD ++ L + L L+++NLPGG R+R+ DE +R
Sbjct: 101 ARYTPEIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRS 160
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILL----------TVPPSLIRRSK 189
F EGDL+ AE+ + +G+ +LHTRSLKYGKL G+ L TV + + RS+
Sbjct: 161 FFNEGDLVVAEVQSVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTVRGTGVVRSR 220
Query: 190 SHFCNL--ACGA--QVILGCNGYVWVSA--IDENKSGG---------------------F 222
+ A G VILG NGY+W+S D ++ G +
Sbjct: 221 RQVWTIETAYGGPIDVILGVNGYIWISKHIRDPSQEDGSNPRSKQVSFTRLEDMVNASMY 280
Query: 223 IQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
+ + L+ R+ ITR+ I+ L E V + ++ AYE SL
Sbjct: 281 SSQNDRISLATRKEITRVAGCIRVLVEGGVKVDQDTVMKAYEASL 325
>gi|255567640|ref|XP_002524799.1| rrp4, putative [Ricinus communis]
gi|223535983|gb|EEF37642.1| rrp4, putative [Ricinus communis]
Length = 322
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 128/218 (58%), Gaps = 15/218 (6%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
+ GHGT D E+ A+ GVVE+VN LV VR++ SRY E+G+++VGRV + ++W ++
Sbjct: 52 LKGHGTAERDGEVVATTCGVVERVNMLVYVRSLRSRYKPEVGDIIVGRVIEVAQKRWKLE 111
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
N ++ L L+S+NLP G QRRR+ DE MR +E D++ AE+ +GSL L R
Sbjct: 112 INFSQDAVLMLSSMNLPDGIQRRRTALDELNMRNVFEENDVVCAEVRNFQNDGSLQLQAR 171
Query: 166 SLKYGKLGQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYVW----VSAID----- 215
S KYGKL +G LLTV P L++R K HF +L +ILGCNG++W V A D
Sbjct: 172 SQKYGKLEKGQLLTVSPYLVKRQKQHFHHLVQYDVDLILGCNGFIWVGEHVDARDSMVED 231
Query: 216 -----ENKSGGFIQNMEVVKLSDRETITRLNNVIKALA 248
E++ + E V L R I R+ N ++ L+
Sbjct: 232 QVNETEDQDTKSNKTFEEVPLETRRNICRIANAVRVLS 269
>gi|296422245|ref|XP_002840672.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636893|emb|CAZ84863.1| unnamed protein product [Tuber melanosporum]
Length = 355
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 143/259 (55%), Gaps = 22/259 (8%)
Query: 31 PILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
PI+TPGE V +M GHGT ++V G VN+L+SV+ + +RY EIG++V
Sbjct: 51 PIVTPGEIVTSDPQWMRGHGTCLMRGR-DSAVDGDDSDVNKLLSVKPLRARYTPEIGDLV 109
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGR+ +QS++W VD NS L + L L+S+NLPGG R+R+ DE +R F EGDL+ AE
Sbjct: 110 VGRIAEVQSKRWKVDINSTLMAHLLLSSINLPGGILRKRTSTDELQIRSFFSEGDLLVAE 169
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL--ACGA---QVILGC 205
+ + +G+ +LHTRSLKYGKL G L V I R KSH L A GA VILG
Sbjct: 170 VQSLFQDGAASLHTRSLKYGKLRNGYFLKVKAGGIVRGKSHIVTLEAANGAGEVDVILGV 229
Query: 206 NGYVWVSA---------------IDENKSGGFIQNM-EVVKLSDRETITRLNNVIKALAE 249
NGYVWVS ++E S N+ E + R I R+ N ++A+
Sbjct: 230 NGYVWVSKKVTLQAPPGGESITRLEEEASEAIYSNVNEDIAPVTRREIARVGNCVRAMVR 289
Query: 250 SKVMLFDTSIQYAYEESLK 268
V + + + Y +L+
Sbjct: 290 WNVRVDEEVLNAVYLSALE 308
>gi|225436884|ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-like [Vitis vinifera]
Length = 330
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 131/234 (55%), Gaps = 24/234 (10%)
Query: 39 VEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQ 98
V Y +G + GHGT D E+ A++ GVVE+VN+LV +R + +RY E G+++VGRVT +
Sbjct: 44 VNYEDGVLKGHGTLDLDGEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIA 103
Query: 99 SQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEG 158
++W +D N ++ L L+S+NLP G QRRR+ DE MR +E D++ AE+ +G
Sbjct: 104 PKRWRLDINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDG 163
Query: 159 SLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWVSAIDEN 217
SL L RS KYGKL +G +LT+ P L++R K H L G +ILGCNG++WV E
Sbjct: 164 SLHLQARSQKYGKLERGQVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEA 223
Query: 218 K-------------------SGGFI----QNMEVVKLSDRETITRLNNVIKALA 248
K S F+ Q L R+ I R+ N ++ LA
Sbjct: 224 KGILIEDQTDKAEQLNTKSSSSTFMSLEEQERTYTSLETRQNICRIANAVRVLA 277
>gi|156043601|ref|XP_001588357.1| hypothetical protein SS1G_10804 [Sclerotinia sclerotiorum 1980]
gi|154695191|gb|EDN94929.1| hypothetical protein SS1G_10804 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 328
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 149/261 (57%), Gaps = 27/261 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE + +M GHGT+ P EI +V G V+K N+L+SVR + +RY EIG++
Sbjct: 48 IVTPGEIITDDPQWMRGHGTYVAPGSTEIIGTVAGTVQKTNKLLSVRPLRARYTPEIGDL 107
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +QS++W VD + + + L L+++NLPGG QR+R+ DE +R F EGDL+ A
Sbjct: 108 VVGRIIEVQSKRWRVDIGAPVLANLPLSAINLPGGIQRKRTETDELQIRTFFSEGDLLVA 167
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSL-------IRRSKSHFCNLACGAQ-- 200
E+ Q+ +GS +LHTRSLKYGKL G+ + V + RR + G +
Sbjct: 168 EVQQLYQDGSASLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRARRQVWTIDTVHNGGKVD 227
Query: 201 VILGCNGYVW-------------VSAIDENKSGGFI--QNMEVVKLSDRETITRLNNVIK 245
VILG NG++W ++ I+E+ S QN ++ + RE I R+ VI+
Sbjct: 228 VILGVNGFIWICKNVEVKDGETSITRIEESVSSAAYSSQNDDITPETRRE-IARIKGVIQ 286
Query: 246 ALAESKVMLFDTSIQYAYEES 266
L E + + + + AYE +
Sbjct: 287 LLVEEGLRVDEEMVMKAYEAA 307
>gi|115402927|ref|XP_001217540.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189386|gb|EAU31086.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 383
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 155/303 (51%), Gaps = 56/303 (18%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E + + I+TPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 46 LVEGTDISSGIITPGEVVTDDPQWMRGHGTYMNPLSTSIIATVAGTVQKTNKLLSVQPLR 105
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 106 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 165
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV------------------- 180
F EGDL+ AE+ + ++G+ +LHTRSLKYGKL G+ L V
Sbjct: 166 FFSEGDLVVAEVQTVHSDGAASLHTRSLKYGKLRNGVFLAVTGTGGSGASSSTVKGGVGA 225
Query: 181 ----------PPSLIRRSKSHFCNLACG-----AQVILGCNGYVWVS--AIDENKSGGFI 223
+ RS+ ++ VILG NGY+W+S A D +
Sbjct: 226 GAGSAATGSSGTGGVVRSRRQVWTVSTANGGGDVDVILGVNGYIWISKHADDTPAASSTT 285
Query: 224 QNMEVVKLSD------------------RETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
+++ + ++ + R I RL I+ L + V + + ++ AYEE
Sbjct: 286 ESVSITRMEEMVSSSIYSSQNDEIAPPTRREIARLAQCIQILVQGGVRVDEETVMAAYEE 345
Query: 266 SLK 268
SL+
Sbjct: 346 SLQ 348
>gi|343471089|emb|CCD16409.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 316
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 150/264 (56%), Gaps = 18/264 (6%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEE--------IKASVGGVVEKVNQLVSVRAMNSRYIG 84
L GE +L GY T G P+ I AS+ G+VE +++VSV+ M+SRY
Sbjct: 37 LGYGEDHVFLRGYNTYEGNHPNTAAAAQEGAGEIVASINGMVEVTDRVVSVKGMSSRYTA 96
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
EIG++VVGRV + +W +D + ++ + L++V PGG RRR DE MR EG
Sbjct: 97 EIGDIVVGRVKEVAGNRWRIDIGAFQDAVMLLSNVTEPGGILRRRGRDDELTMRNIFDEG 156
Query: 145 DLISAEIHQISTEGSLTLHTRSL-KYGKLGQ-GILLTVPPSLIRRSKSHF-CNLACGAQV 201
+L+ AE+ +IST+G ++LHTRS KYGKL GIL++V P+L+RR K HF C + +
Sbjct: 157 ELVVAEVQRISTDGVVSLHTRSGEKYGKLSSLGILVSVSPALVRRVKHHFICVESLRINL 216
Query: 202 ILGCNGYVWVSAIDENKS---GGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTS 258
++G NG +WVS+ KS G N L R + R+ N I+ + ++ +FD S
Sbjct: 217 VVGTNGAIWVSSDKSEKSHDAGNSTFNGS--GLDIRRNVARVVNCIRVMGIGRLPVFDKS 274
Query: 259 IQYAYEESLKY--STYDLLKPESK 280
I A + S+ + +D+L P ++
Sbjct: 275 IDAAVKASIDFGLGPFDVLNPANR 298
>gi|242074666|ref|XP_002447269.1| hypothetical protein SORBIDRAFT_06g031660 [Sorghum bicolor]
gi|241938452|gb|EES11597.1| hypothetical protein SORBIDRAFT_06g031660 [Sorghum bicolor]
Length = 319
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 10/213 (4%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
+ GHGT D E+ A++ GVVE+VN+LV VR + +RY E+G+++VGRV + ++W ++
Sbjct: 51 LKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLE 110
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
N ++ L L+S+NLP G QRRR+ DE MR +E D+I AE+ +GSL L R
Sbjct: 111 INFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGSLHLQAR 170
Query: 166 SLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWVSAI----DENKSG 220
S KYGKL +G LL VPP L++R K HF +L +ILGCNG++WV + K+
Sbjct: 171 SEKYGKLERGQLLMVPPYLVKRKKQHFHHLEQYNVDLILGCNGFIWVGEHVVVGETTKTT 230
Query: 221 GFIQNM-----EVVKLSDRETITRLNNVIKALA 248
G Q L R+ I RL N ++ L+
Sbjct: 231 GGQQRFSTEAENFTPLETRKHICRLANAVRVLS 263
>gi|358254204|dbj|GAA54226.1| exosome complex component RRP4 [Clonorchis sinensis]
Length = 389
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 145/292 (49%), Gaps = 58/292 (19%)
Query: 33 LTPGETVEYL-EGYMTGHGTFPDDEE---------------------------IKASVGG 64
+ PGE V L +TGHGT+ D +E ++ S+ G
Sbjct: 37 VVPGEVVFPLGSNLITGHGTYRDVDESAASAQLREAVDRQGPSTHEDSIKTGAMRTSLTG 96
Query: 65 VVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGG 124
V VN+LV V +RY G +G+ VVGR+ ++ ++W VD NS L L L +V LPGG
Sbjct: 97 RVRIVNKLVYVEPPKARYSGNVGDTVVGRIIEVEQRRWKVDINSSLLGNLALANVKLPGG 156
Query: 125 EQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSL 184
E RR+S DE MR F+KEGDLI AE+H+I +G+L LH + GKLG G LL VPPSL
Sbjct: 157 ELRRKSEDDERAMRSFMKEGDLIVAEVHEIYKDGTLQLHMPGTRTGKLGGGCLLRVPPSL 216
Query: 185 IRRSKSHFCNLAC---------------------GAQVILGCNGYVWVSAIDENKSG-GF 222
++R K H LA +ILGCNGYVW+ G G
Sbjct: 217 VKRQKIHRHRLAVPRTSSVHGPLTSASTNPTEVISVGLILGCNGYVWIGPARAMDIGLGL 276
Query: 223 IQNMEVVK--------LSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
+E L++R ++R+ N + AL + + +++TS+ A E S
Sbjct: 277 AAPIESAAEGSTQLDYLAERFAVSRVRNCVIALTRNGMPVWETSVLAACEAS 328
>gi|145347330|ref|XP_001418126.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578354|gb|ABO96419.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 144/264 (54%), Gaps = 50/264 (18%)
Query: 32 ILTPGETVEYL---EGYMTGHGTFPDDEE------------IKASVGGVVEKVNQLVSVR 76
++PGE + + EG++ GHGT P E+ + A+ GVVE+VN+LVSVR
Sbjct: 36 FVSPGERIPGIDSSEGFLRGHGTRPIAEDNGTDGDGDDDRGLVATTAGVVERVNKLVSVR 95
Query: 77 AMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM 136
A+ +RY E G+VV+GRV + ++W++D N+ L L++V+LPG QRRR+ DE
Sbjct: 96 ALKARYAPETGDVVLGRVKEISGKRWILDVNARQNGVLQLSAVHLPGNVQRRRNDVDELN 155
Query: 137 MREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL- 195
MR E D++SAE+ + +G+ LHTRSLKYG L G L+ V +L+RR HF L
Sbjct: 156 MRMLYAEDDVVSAEVQSVYADGAAALHTRSLKYGCLKNGQLVRVTANLVRRLPQHFHRLK 215
Query: 196 -----------ACGAQVILGCNGYVWVSA-------------------IDENKSGGFIQN 225
A +++LGCNG++WV A +DE + +
Sbjct: 216 MDEFHDGVAAEANDVEILLGCNGFIWVGAPSGATAPRESEIRREPSDVVDELRE---LHG 272
Query: 226 MEVVKLSDRETITRLNNVIKALAE 249
EV + RE I+R+ N ++ALAE
Sbjct: 273 DEVSPVQ-RENISRVANSVRALAE 295
>gi|224072941|ref|XP_002303939.1| predicted protein [Populus trichocarpa]
gi|222841371|gb|EEE78918.1| predicted protein [Populus trichocarpa]
Length = 320
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 144/252 (57%), Gaps = 22/252 (8%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
+ GHGT D E+ A++ GVVE+VN+LV VR + +RY EIG+++VGRV + ++W ++
Sbjct: 51 LKGHGTSERDGEVVATLCGVVERVNKLVYVRTLRARYKPEIGDIIVGRVVEVAQKRWKLE 110
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
N ++ L L+S+NLP G QRRR+ DE MR +E D++ E+ +G + L R
Sbjct: 111 INFSQDAVLMLSSMNLPDGLQRRRTALDELNMRSIFEENDVVCGEVRNFQNDGGIQLQAR 170
Query: 166 SLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWV-------SAIDEN 217
S KYGKL +G LLT+PP L++R K HF +L G +ILGCNG++WV I E+
Sbjct: 171 SQKYGKLEKGQLLTIPPYLVKRQKHHFHHLEQYGVDLILGCNGFIWVGEHVEARDCIVED 230
Query: 218 KSGGFIQNM------EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYE-----ES 266
+ Q + + L R +I ++ N I+ L+ ++ F+ +++ E +
Sbjct: 231 QLNNTEQQFTKSNTTKEMPLETRRSICQIANAIRVLS---ILGFNVTLEVILETIDLSST 287
Query: 267 LKYSTYDLLKPE 278
L ++L PE
Sbjct: 288 LNLGIDEMLGPE 299
>gi|222619320|gb|EEE55452.1| hypothetical protein OsJ_03610 [Oryza sativa Japonica Group]
Length = 428
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 133/228 (58%), Gaps = 12/228 (5%)
Query: 33 LTPGETVEYLEG--YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
+T ET+ +G GHGT D E+ A++ GVVE+VN+LV VR + +RY E+G+++
Sbjct: 32 VTVAETIPVKDGEKIFKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDII 91
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGRV + ++W ++ N ++ L L+S+NLP G QRRR+ DE MR +E D+I AE
Sbjct: 92 VGRVIEIAPKRWRLEINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAE 151
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYV 209
+ +GSL L RS KYGKL +G LL VP L++R K HF +L +ILGCNG++
Sbjct: 152 VRGFQHDGSLHLQARSQKYGKLERGQLLVVPAYLVKRRKQHFHHLEQYDVDLILGCNGFI 211
Query: 210 WV---------SAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALA 248
WV + + ENK + L R+ I RL N ++ L+
Sbjct: 212 WVGEHVVVGENANMMENKLNLSAEVENFTPLETRKHICRLANAVRVLS 259
>gi|159128032|gb|EDP53147.1| exosome complex exonuclease Rrp4, putative [Aspergillus fumigatus
A1163]
Length = 390
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 159/305 (52%), Gaps = 59/305 (19%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E + I+TPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 49 LVEGTKIGAGIVTPGEVVTDDPQWMRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RYI EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 109 ARYIPEIGDLVVGRIVEVQSRRWKVDIAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 168
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV----------------PPS 183
F EGDL+ AE+ + ++GS +LHTRSLKYGKL G+ L V P +
Sbjct: 169 FFSEGDLVVAEVQSVHSDGSASLHTRSLKYGKLRNGVFLAVAGTGGSGASSSTVKGGPGA 228
Query: 184 ---------------LIRRSKSHF-CNLACGA---QVILGCNGYVWV----------SAI 214
++R + + N A G +ILG NGY+W+ S+
Sbjct: 229 GTASAGLLGTSGTGGVVRARRQQWTVNTANGGGEVNIILGVNGYIWIAKHADGAAAASST 288
Query: 215 DENKSGGFI-----------QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAY 263
EN S + QN E+ + RE I RL I+ L + V + + ++ AY
Sbjct: 289 TENVSITRMEEMVSSSIYSSQNDEIPPQTRRE-IARLAQCIRVLVQGGVRVDEETVMRAY 347
Query: 264 EESLK 268
+ SL+
Sbjct: 348 DASLQ 352
>gi|71000673|ref|XP_755018.1| exosome complex exonuclease Rrp4 [Aspergillus fumigatus Af293]
gi|66852655|gb|EAL92980.1| exosome complex exonuclease Rrp4, putative [Aspergillus fumigatus
Af293]
Length = 390
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 159/305 (52%), Gaps = 59/305 (19%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E + I+TPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 49 LVEGTKIGAGIVTPGEVVTDDPQWMRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RYI EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 109 ARYIPEIGDLVVGRIVEVQSRRWKVDIAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 168
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV----------------PPS 183
F EGDL+ AE+ + ++GS +LHTRSLKYGKL G+ L V P +
Sbjct: 169 FFSEGDLVVAEVQSVHSDGSASLHTRSLKYGKLRNGVFLAVAGTGGSGASSSTVKGGPGA 228
Query: 184 ---------------LIRRSKSHF-CNLACGA---QVILGCNGYVWV----------SAI 214
++R + + N A G +ILG NGY+W+ S+
Sbjct: 229 GTASAGLLGTSGTGGVVRARRQQWTVNTANGGGEVNIILGVNGYIWIAKHADGAAAASST 288
Query: 215 DENKSGGFI-----------QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAY 263
EN S + QN E+ + RE I RL I+ L + V + + ++ AY
Sbjct: 289 TENVSITRMEEMVSSSIYSSQNDEIPPQTRRE-IARLAQCIRVLVQGGVRVDEETVMRAY 347
Query: 264 EESLK 268
+ SL+
Sbjct: 348 DASLQ 352
>gi|323337291|gb|EGA78544.1| Rrp4p [Saccharomyces cerevisiae Vin13]
Length = 281
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 147/277 (53%), Gaps = 41/277 (14%)
Query: 60 ASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSV 119
+SV G V +VN+L+SV + RY E G+ VVGR+ + +++W VD + L L SV
Sbjct: 4 SSVAGTVSRVNRLLSVIPLKGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSV 63
Query: 120 NLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLT 179
NLPGG RR+S DE MR FLKEGDL++AE+ + +GS +LHTRSLKYGKL G+
Sbjct: 64 NLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQ 123
Query: 180 VPPSLIRRSKSHFCNLACGAQVILGCNGYVWV------------------SAIDENKSGG 221
VP SLI R+K+H NL V+LG NGY+W+ S+I G
Sbjct: 124 VPSSLIVRAKNHTHNLPGNITVVLGVNGYIWLRKTSQMDLARDTPSANNSSSIKSTGPTG 183
Query: 222 FIQ-NMEVVKLSD-------------------RETITRLNNVIKALAESKVMLFDTSIQY 261
+ N + +L + R+ I R NVIKALA ++ + I
Sbjct: 184 AVSLNPSITRLEEESSWQIYSDENDPSISNNIRQAICRYANVIKALAFCEIGITQQRIVS 243
Query: 262 AYEESLKYSTYDLLKPESKLDLV---LCTAQKLQTLG 295
AYE S+ YS L ++ ++ + + TA+K++ G
Sbjct: 244 AYEASMVYSNVGELIEKNVMESIGSDILTAEKMRGNG 280
>gi|391868728|gb|EIT77938.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp4 [Aspergillus
oryzae 3.042]
Length = 392
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 57/304 (18%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E + T ++TPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 49 LVEGTDITSGVVTPGEIVTDDPQWMRGHGTYINPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 168
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP------------------ 181
F EGDL+ AE+ + ++G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 FFSEGDLVVAEVQTVHSDGAASLHTRSLKYGKLRNGVFLAVTGTGGSGASSSMVKGGVGS 228
Query: 182 ---PS----------LIR-RSKSHFCNLACGA---QVILGCNGYVWVS--AIDENKSGGF 222
P+ ++R R + N A G VILG NGY+W+S A D +
Sbjct: 229 GPIPAGAMGASGTGGVVRSRRQVWTVNTANGGGDVDVILGVNGYIWISKHADDTAAACST 288
Query: 223 IQNMEVVKLSD------------------RETITRLNNVIKALAESKVMLFDTSIQYAYE 264
++ + ++ + R I RL I+ L + V + + ++ AYE
Sbjct: 289 TDSVSITRMEEMVSSSIYSSQNDDIPPQTRREIARLAQCIRVLVQGGVRVDEETVMSAYE 348
Query: 265 ESLK 268
SL+
Sbjct: 349 ASLQ 352
>gi|119608349|gb|EAW87943.1| exosome component 2, isoform CRA_c [Homo sapiens]
Length = 127
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/126 (58%), Positives = 104/126 (82%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VVGR+T +Q ++W V+
Sbjct: 1 MRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVE 60
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+ + ++G+++LHTR
Sbjct: 61 TNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTR 120
Query: 166 SLKYGK 171
SLKYGK
Sbjct: 121 SLKYGK 126
>gi|169779940|ref|XP_001824434.1| exosome complex component rrp4 [Aspergillus oryzae RIB40]
gi|83773174|dbj|BAE63301.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 392
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 57/304 (18%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E + T ++TPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 49 LVEGTDITSGVVTPGEIVTDDPQWMRGHGTYINPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 168
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP------------------ 181
F EGDL+ AE+ + ++G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 FFSEGDLVVAEVQTVHSDGAASLHTRSLKYGKLRNGVFLAVTGTGGSGASSSMVKGGVGS 228
Query: 182 ---PS----------LIR-RSKSHFCNLACGA---QVILGCNGYVWVS--AIDENKSGGF 222
P+ ++R R + N A G VILG NGY+W+S A D +
Sbjct: 229 GPIPAGAMGASGTGGVVRSRRQVWTVNTANGGGDVDVILGVNGYIWISKHADDTAAACST 288
Query: 223 IQNMEVVKLSD------------------RETITRLNNVIKALAESKVMLFDTSIQYAYE 264
++ + ++ + R I RL I+ L + V + + ++ AYE
Sbjct: 289 TDSVSITRMEEMVSSSIYSSQNDDIPPQTRREIARLAQCIRVLVQGGVRVDEENVMSAYE 348
Query: 265 ESLK 268
SL+
Sbjct: 349 ASLQ 352
>gi|115459464|ref|NP_001053332.1| Os04g0520000 [Oryza sativa Japonica Group]
gi|21741863|emb|CAD41453.1| OSJNBa0019D11.5 [Oryza sativa Japonica Group]
gi|113564903|dbj|BAF15246.1| Os04g0520000 [Oryza sativa Japonica Group]
gi|116310818|emb|CAH67607.1| OSIGBa0145G11.6 [Oryza sativa Indica Group]
gi|215736890|dbj|BAG95819.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195230|gb|EEC77657.1| hypothetical protein OsI_16671 [Oryza sativa Indica Group]
Length = 315
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 128/216 (59%), Gaps = 10/216 (4%)
Query: 43 EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKW 102
+ + GHGT D E+ A++ GVVE+VN+LV VR + +RY E+G+++VGRV + ++W
Sbjct: 44 DNILKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRW 103
Query: 103 VVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTL 162
++ N ++ L L+S+NLP G QRRR+ DE MR +E D+I AE+ +GSL L
Sbjct: 104 RLEINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGSLHL 163
Query: 163 HTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWV---------S 212
RS KYGKL +G LL VP L++R K HF +L +ILGCNG++WV +
Sbjct: 164 QARSQKYGKLERGQLLVVPAYLVKRRKQHFHHLEQYDVDLILGCNGFIWVGEHVVVGENA 223
Query: 213 AIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALA 248
+ ENK + L R+ I RL N ++ L+
Sbjct: 224 NMMENKLNLSAEVENFTPLETRKHICRLANAVRVLS 259
>gi|119493346|ref|XP_001263863.1| exosome complex exonuclease Rrp4, putative [Neosartorya fischeri
NRRL 181]
gi|119412023|gb|EAW21966.1| exosome complex exonuclease Rrp4, putative [Neosartorya fischeri
NRRL 181]
Length = 390
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 159/305 (52%), Gaps = 59/305 (19%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E + I+TPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 49 LVEGTKIGAGIVTPGEVVTDDPQWMRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RYI EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 109 ARYIPEIGDLVVGRIVEVQSRRWKVDIAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 168
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV----------------PPS 183
F EGDL+ AE+ + ++GS +LHTRSLKYGKL G+ L V P +
Sbjct: 169 FFSEGDLVVAEVQSVHSDGSASLHTRSLKYGKLRNGVFLAVTGTGGSGASSSTVKGGPGA 228
Query: 184 ---------------LIRRSKSHF-CNLACGA---QVILGCNGYVWV----------SAI 214
++R + + N A G +ILG NGY+W+ S+
Sbjct: 229 GTASAGAMGTSGTGGVVRARRQQWTVNTANGGGEVNIILGVNGYIWIAKHADGAAAASST 288
Query: 215 DENKSGGFI-----------QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAY 263
EN S + QN E+ + RE I RL I+ L + V + + ++ AY
Sbjct: 289 TENVSITRLEEMVSSSIYSSQNDEIPPQTRRE-IARLAQCIRVLVQGGVRVDEETVMRAY 347
Query: 264 EESLK 268
+ SL+
Sbjct: 348 DASLQ 352
>gi|357124713|ref|XP_003564042.1| PREDICTED: exosome complex component rrp4-like [Brachypodium
distachyon]
Length = 319
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 18/220 (8%)
Query: 43 EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKW 102
+ + GHGT D E+ A++ GVVE+VN+LV VR + +RY E+G+++VGRV + ++W
Sbjct: 48 DNILKGHGTSDHDGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRW 107
Query: 103 VVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTL 162
++ N ++ L L+S+NLP G QRRR+ DE MR +E D++ AE+ +GSL L
Sbjct: 108 RLEINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVVCAEVRGFQHDGSLHL 167
Query: 163 HTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWVSA---IDENK 218
RS KYGKL +G LLTVP L++R K HF +L +ILGCNG+VWV + EN
Sbjct: 168 QARSQKYGKLQRGQLLTVPAYLVKRRKQHFHHLEQYDVDLILGCNGFVWVGQHVLVRENT 227
Query: 219 SGGFIQNMEVVKLSD----------RETITRLNNVIKALA 248
+ KLSD R+ I RL N ++ L+
Sbjct: 228 ES----KEDKQKLSDEVDTFTPIETRKHICRLANAVRVLS 263
>gi|356572158|ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-like [Glycine max]
Length = 327
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 119/181 (65%), Gaps = 2/181 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ V + +G + GHGT + E+ A++ GVVE+VN+LV VRA+ SRY E+G++V+
Sbjct: 37 IIADSIHVNHEDGVLKGHGTADLNGEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVI 96
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GRV + ++W ++ N ++ L L+S+N+P G QRRR+ DE MR +E D++ AE+
Sbjct: 97 GRVVEVAQKRWRLEINYNQDAVLLLSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEV 156
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVW 210
+G L L RS KYGKL +G LLTVPP L++R K HF +L G +ILGCNG++W
Sbjct: 157 RGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIW 215
Query: 211 V 211
V
Sbjct: 216 V 216
>gi|118373331|ref|XP_001019859.1| hypothetical protein TTHERM_00586540 [Tetrahymena thermophila]
gi|89301626|gb|EAR99614.1| hypothetical protein TTHERM_00586540 [Tetrahymena thermophila
SB210]
Length = 309
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 149/250 (59%), Gaps = 10/250 (4%)
Query: 11 EIMLASDRIDPLIEIHE--FTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEK 68
+++ D+ID +H+ I+ PG+ ++ +G+M GHGT+ ++ I +SV G V +
Sbjct: 3 DLLKIKDQIDFKKYLHDDMLGLNIVLPGDVIKKEKGFMNGHGTYEENGIIYSSVIGTVVQ 62
Query: 69 VNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRR 128
N+L+SV + S Y ++G++VVGRV + +KW ++ S ++LHL S +P EQR
Sbjct: 63 TNKLLSVSPLKSYYTPQVGDIVVGRVMEIGDKKWKIEIGSNQYASLHLNSTYIP--EQRI 120
Query: 129 RSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRS 188
++ +DE MR+ +KEGDL AEIH I+ + + LHTRSLKYGKL G L+ V L++
Sbjct: 121 KTDEDELNMRQIMKEGDLACAEIHSINKDKTANLHTRSLKYGKLENGFLVEVFNKLVKTQ 180
Query: 189 KSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVK----LSDRETITRLNNVI 244
+HF L CG +I NG +W++ I ++ G + EV K +R+ ++ ++N++
Sbjct: 181 TNHFKKLQCGINIIFSHNGKIWLNNI--SREGIIKEQKEVEKKQYSYEERQALSIISNLL 238
Query: 245 KALAESKVML 254
K L + + +
Sbjct: 239 KLLDQQNIKI 248
>gi|315047440|ref|XP_003173095.1| exosome complex exonuclease RRP4 [Arthroderma gypseum CBS 118893]
gi|311343481|gb|EFR02684.1| exosome complex exonuclease RRP4 [Arthroderma gypseum CBS 118893]
Length = 371
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 149/281 (53%), Gaps = 41/281 (14%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTFPDDE----EIKASVGGVVEKVNQLVSVRAMNSRYI 83
TD I+TPGE + +M GHGTF I A+V G V K N+L+SV + +RY
Sbjct: 45 ITDTIVTPGEIITDDPQWMRGHGTFTPTVPVTTNIIATVAGTVLKTNKLLSVYPLRARYT 104
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
EIG++VVGR+ +QS++W VD ++ L + L L+++NLPGG R+R+ DE +R F E
Sbjct: 105 PEIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNE 164
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----------PSLIRRSKSHFC 193
GDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V + + RS+
Sbjct: 165 GDLVVAEVQSVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVW 224
Query: 194 NL--ACGA--QVILGCNGYVWVS-----AIDENKSGGFIQNMEVVKLSD----------- 233
+ A G VILG NGY+W+S DE +G + + +L D
Sbjct: 225 TIETAYGGPIDVILGVNGYIWISKHVGEPSDEGATGSKSKQVSFTRLEDMVNTSMYSSQN 284
Query: 234 -------RETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
R+ ITR+ I+ L E V + ++ AYE SL
Sbjct: 285 DDISLATRKEITRIAGCIRVLVEGGVKVDQETVMRAYEASL 325
>gi|440634112|gb|ELR04031.1| hypothetical protein GMDG_06542 [Geomyces destructans 20631-21]
Length = 344
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 144/261 (55%), Gaps = 30/261 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE V +M GHGT+ P I A+V G ++K N+L+SVR + +RY EIG++
Sbjct: 51 IVTPGEVVTDDPQWMRGHGTYVEPATSAILATVAGTIQKTNKLLSVRPLRARYTPEIGDL 110
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +QS++W VD + L +AL L+++NLPGG R+R+ DE +R FL EGDL+
Sbjct: 111 VVGRIIDVQSRRWRVDIGAPLLAALPLSAINLPGGILRKRTETDELQIRTFLSEGDLLVC 170
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGIL----LTVPPSLIRRSKSHF-----CNLACGAQ 200
E+ + +GS +LHTRSLKYGKL G+ + RS+ N
Sbjct: 171 EVQSLFHDGSASLHTRSLKYGKLRNGVFVSVAGMGGGGGVVRSRRQVWTVETANGGGPVD 230
Query: 201 VILGCNGYVWVS----AIDENKSGGFI--------------QNMEVVKLSDRETITRLNN 242
VILG NGY+W+S DE+K+ I QN E+ + RE I R+
Sbjct: 231 VILGVNGYIWISKHIKTADEDKAEVGITRIEESTNSTVYSSQNDEIAAETRRE-IARIRG 289
Query: 243 VIKALAESKVMLFDTSIQYAY 263
V+ +L E+ + + + + Y
Sbjct: 290 VVASLVEAGMKVDEEMLMKGY 310
>gi|389634805|ref|XP_003715055.1| exosome component 2 [Magnaporthe oryzae 70-15]
gi|351647388|gb|EHA55248.1| exosome component 2 [Magnaporthe oryzae 70-15]
Length = 361
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 152/290 (52%), Gaps = 52/290 (17%)
Query: 32 ILTPGETVEYLEGYMTGHGT--FPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPG+ + +M GHGT FP I +SV G V + N+L+SVR M +RY E+G++
Sbjct: 46 IVTPGQVITEDPQWMRGHGTYTFPASPAIMSSVAGTVSRTNKLLSVRPMRARYTPEVGDL 105
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q+++W VD + +AL L+++NLPGG R+R+ DE +R F EGDL+ A
Sbjct: 106 VVGRIVEVQARRWKVDVGGVQLAALPLSAINLPGGILRKRTETDELQIRSFFAEGDLLVA 165
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLT---VPPSLIRRSKSHFCNL----------- 195
E+ Q+ +G +LHTRSL+YGKL G+ + R++ +
Sbjct: 166 EVQQLFGDGGASLHTRSLRYGKLRNGVFAAVSGTGGGGVVRARRQVWTMEIASTGTSATW 225
Query: 196 ------ACGAQ------VILGCNGYVWVSAIDE---------NKSGGFIQNME------- 227
A +Q V+LG NGYVW+S E N +G I NME
Sbjct: 226 QDKQQKAASSQAPPSIDVVLGVNGYVWISKHVEDPTEGDGSANATGTGISNMEEAVSAKM 285
Query: 228 -------VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYS 270
+ ++ RE I R+ VI AL E+ V + + ++ AY E+++ +
Sbjct: 286 YSSQNAPIDPVTMRE-IVRVRGVITALVENGVRVDEDMVERAYREAVEMA 334
>gi|367030457|ref|XP_003664512.1| hypothetical protein MYCTH_2307431 [Myceliophthora thermophila ATCC
42464]
gi|347011782|gb|AEO59267.1| hypothetical protein MYCTH_2307431 [Myceliophthora thermophila ATCC
42464]
Length = 367
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 155/302 (51%), Gaps = 35/302 (11%)
Query: 26 HEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
+ ++TPGE + +M GHGT+ P I +SV G V + N+L+SVR + +RY
Sbjct: 67 RDLASAVVTPGEVITEDPQWMRGHGTYVAPHTTAIVSSVAGTVTRTNKLLSVRPLRARYT 126
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
E+G++VVGR+ +Q+++W VD S +AL L+++NLPGG R+R+ DE +R F E
Sbjct: 127 PEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAE 186
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKS---------HFCN 194
GDL+ AE+ Q+ +G LHTRSLKYGKL G+ + V N
Sbjct: 187 GDLLVAEVQQLFGDGGAVLHTRSLKYGKLRNGVFVAVSGMGGGGGVVRSRRQVWTMDAAN 246
Query: 195 LACGAQVILGCNGYVWVSA------IDENKSGGFIQNME-------------VVKLSDRE 235
V+LG NGYVW+S + K+ G I NME +++
Sbjct: 247 GGGQIDVVLGVNGYVWISKHVETPEAEAGKATG-ITNMEESVSATVYSSQNDRIEVETMR 305
Query: 236 TITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLG 295
I RL V+ AL E+ + + + + Y E+++ + L+ PE D+ L +K Q L
Sbjct: 306 EIARLRGVVTALVENGLRVDEEMVVKGYHEAVEMA---LVSPEGPDDVYLG-GEKGQQLA 361
Query: 296 LA 297
A
Sbjct: 362 AA 363
>gi|317032517|ref|XP_001395031.2| exosome complex component rrp4 [Aspergillus niger CBS 513.88]
Length = 390
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 57/304 (18%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E +LTPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 49 LVEGTNIGAGVLTPGEIVTDDPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 168
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP------------------ 181
F EGDL+ AE+ + ++G +LHTRSLKYGKL G+ L V
Sbjct: 169 FFSEGDLVVAEVQTVHSDGGASLHTRSLKYGKLRNGVFLAVTGTGGSGASSSSVKGTSGA 228
Query: 182 -------------PSLIR-RSKSHFCNLACGA---QVILGCNGYVWVS--AIDENKSGGF 222
++R R + N A G VILG NGY+W+S A +
Sbjct: 229 SATGAGAGGAAGAGGVVRSRRQVWTINTANGGGDVDVILGVNGYIWISKHADGAAAASST 288
Query: 223 IQNMEVVKLSD------------------RETITRLNNVIKALAESKVMLFDTSIQYAYE 264
+N+ + ++ + R I RL I+ L V + + ++ AYE
Sbjct: 289 TENVSITRMEEMVSSSIYSSQNDDIPPQTRREIARLAQCIRVLVNGGVRVDEETVMGAYE 348
Query: 265 ESLK 268
SL+
Sbjct: 349 ASLQ 352
>gi|453086300|gb|EMF14342.1| hypothetical protein SEPMUDRAFT_41489 [Mycosphaerella populorum
SO2202]
Length = 311
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 32/279 (11%)
Query: 19 IDPLIEIHEFTD-PILTPGETVEYLEGYMTGHGTF--PDDE--EIKASVGGVVEKVNQLV 73
ID L H T ++TPG + +M GHGTF P D I+++V G ++K N+L+
Sbjct: 3 IDALPSGHSNTSRQLITPGMIITSDPQWMRGHGTFTAPSDSTSAIRSTVAGTLQKTNKLL 62
Query: 74 SVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQD 133
SV + +RY EIG++V+GR+ +QS++W VD + + ++L L+S+NLPGG RRR+ D
Sbjct: 63 SVVPLRARYTPEIGDLVIGRIVEVQSRRWKVDVAAPVLASLQLSSINLPGGTLRRRTGYD 122
Query: 134 EEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLT----VPPSLIRRSK 189
E +R F EG+L+ AE+ + +GS LHTRSLKYGKL G + S + RSK
Sbjct: 123 ELNIRSFFGEGELLVAEVQSLFQDGSAALHTRSLKYGKLRNGYFMAVSGVGGGSGVVRSK 182
Query: 190 SHFCNLACGAQ-----VILGCNGYVWV---------------SAIDENKSGGFI--QNME 227
+ + VILG NGYVW+ + I+E S G QN E
Sbjct: 183 RQIFTIQTRGKGGEVDVILGVNGYVWINKHAELKEQGDAVGLNKIEETVSIGMYSSQNDE 242
Query: 228 VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
+ + RE I R+ I+AL E V + + ++ AYE S
Sbjct: 243 IGNETRRE-IARVAGCIRALVEGSVKVAEETVVRAYEAS 280
>gi|358369064|dbj|GAA85679.1| exosome complex exonuclease Rrp4 [Aspergillus kawachii IFO 4308]
Length = 390
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 57/304 (18%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E +LTPGE V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 49 LVEGTNIGAGVLTPGEIVTDDPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 168
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP------------------ 181
F EGDL+ AE+ + ++G +LHTRSLKYGKL G+ L V
Sbjct: 169 FFSEGDLVVAEVQSVHSDGGASLHTRSLKYGKLRNGVFLAVTGTGGSGASSSSVKGTSGA 228
Query: 182 -------------PSLIR-RSKSHFCNLACGA---QVILGCNGYVWVS--AIDENKSGGF 222
++R R + N A G VILG NGY+W+S A +
Sbjct: 229 SATGAGAGGAAGAGGVVRSRRQVWTINTANGGGDVDVILGVNGYIWISKHADGAAAASST 288
Query: 223 IQNMEVVKLSD------------------RETITRLNNVIKALAESKVMLFDTSIQYAYE 264
+N+ + ++ + R I RL I+ L V + + ++ AYE
Sbjct: 289 TENVSITRMEEMVSSSIYSSQNDDIPPQTRREIARLAQCIRVLVNGGVRVDEETVMGAYE 348
Query: 265 ESLK 268
SL+
Sbjct: 349 ASLQ 352
>gi|194704246|gb|ACF86207.1| unknown [Zea mays]
gi|414584980|tpg|DAA35551.1| TPA: hypothetical protein ZEAMMB73_729707 [Zea mays]
Length = 319
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 127/213 (59%), Gaps = 10/213 (4%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
+ GHGT D E+ A++ GVVE+VN+LV VR + +RY E+G+++VGRV + ++W ++
Sbjct: 51 LKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLE 110
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
N ++ L L+S+NLP G QRRR+ DE MR +E D+I AE+ +GSL L R
Sbjct: 111 INFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGSLHLQAR 170
Query: 166 SLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVW----VSAIDENKSG 220
S KYGKL +G LL V P L++R K HF +L +ILGCNG++W V ++ K+
Sbjct: 171 SEKYGKLERGQLLMVAPYLVKRKKQHFHHLEKYNVDLILGCNGFIWAGEHVVVGEKPKTT 230
Query: 221 GFIQNM-----EVVKLSDRETITRLNNVIKALA 248
G Q L R+ I RL N ++ L+
Sbjct: 231 GGQQGFSTEAENFTPLETRKHICRLANSVRVLS 263
>gi|449296522|gb|EMC92542.1| hypothetical protein BAUCODRAFT_78185 [Baudoinia compniacensis UAMH
10762]
Length = 305
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 158/281 (56%), Gaps = 26/281 (9%)
Query: 19 IDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFP--DDEEIKASVGGVVEKVNQLVSVR 76
ID L H + ++TPGET+ +M GHGTF D I++++ G ++K N+L+S+
Sbjct: 3 IDELPSGHGHSVKVITPGETITDDPQWMRGHGTFAGADSITIRSTLAGTLQKTNKLLSIV 62
Query: 77 AMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM 136
+ +RY EIG++V+GR+ +Q ++W VD + L + L L+S+NLPGG R+R+ DE
Sbjct: 63 PLRARYTPEIGDLVIGRIVEVQGRRWKVDVAAPLLANLLLSSINLPGGVLRKRTSVDELN 122
Query: 137 MREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP-----PSLIRRSKSH 191
+R F EG+L+ AE+ + +GS +LHTRSL+YGKL G ++V ++R +
Sbjct: 123 IRAFFGEGELLVAEVQSLFQDGSASLHTRSLRYGKLRNGYFMSVSGMGGGAGVVRAKRQI 182
Query: 192 FC--NLACGAQ--VILGCNGYVWVS--AIDENKSGGFIQNME-------------VVKLS 232
F G + VILG NGY+W+S DE K I +E VV+
Sbjct: 183 FTLQTTRSGGEVDVILGVNGYIWISKHVADEKKEDVGINRLEETASTSMYSSQNDVVEAE 242
Query: 233 DRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYD 273
R+ I + + I+AL E V + + +++ AY+ L+ ++ D
Sbjct: 243 TRQEIATIASCIRALIEGGVKVEEETVRRAYDACLELNSQD 283
>gi|440475553|gb|ELQ44222.1| exosome complex exonuclease RRP4 [Magnaporthe oryzae Y34]
gi|440490682|gb|ELQ70211.1| exosome complex exonuclease RRP4 [Magnaporthe oryzae P131]
Length = 340
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 152/290 (52%), Gaps = 52/290 (17%)
Query: 32 ILTPGETVEYLEGYMTGHGT--FPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPG+ + +M GHGT FP I +SV G V + N+L+SVR M +RY E+G++
Sbjct: 25 IVTPGQVITEDPQWMRGHGTYTFPASPAIMSSVAGTVSRTNKLLSVRPMRARYTPEVGDL 84
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q+++W VD + +AL L+++NLPGG R+R+ DE +R F EGDL+ A
Sbjct: 85 VVGRIVEVQARRWKVDVGGVQLAALPLSAINLPGGILRKRTETDELQIRSFFAEGDLLVA 144
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLT---VPPSLIRRSKSHFCNL----------- 195
E+ Q+ +G +LHTRSL+YGKL G+ + R++ +
Sbjct: 145 EVQQLFGDGGASLHTRSLRYGKLRNGVFAAVSGTGGGGVVRARRQVWTMEIASTGTSATW 204
Query: 196 ------ACGAQ------VILGCNGYVWVSAIDE---------NKSGGFIQNME------- 227
A +Q V+LG NGYVW+S E N +G I NME
Sbjct: 205 QDKQQKAASSQAPPSIDVVLGVNGYVWISKHVEDPTEGDGSANATGTGISNMEEAVSAKM 264
Query: 228 -------VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYS 270
+ ++ RE I R+ VI AL E+ V + + ++ AY E+++ +
Sbjct: 265 YSSQNAPIDPVTMRE-IVRVRGVITALVENGVRVDEDMVERAYREAVEMA 313
>gi|357478895|ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
gi|217074186|gb|ACJ85453.1| unknown [Medicago truncatula]
gi|355510788|gb|AES91930.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
gi|388516977|gb|AFK46550.1| unknown [Medicago truncatula]
Length = 327
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 114/174 (65%), Gaps = 2/174 (1%)
Query: 39 VEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQ 98
V + +G + GHGT D E+ A++ GVVE+VN+LV VRA+ SRY E+G++V+GRV +
Sbjct: 44 VNHEDGVLKGHGTADLDGEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVA 103
Query: 99 SQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEG 158
++W +D N + L L+++N+P G QRRR+ DE MR +E D+I AE+ +G
Sbjct: 104 QKRWRLDINYSQNAYLMLSAMNMPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDG 163
Query: 159 SLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWV 211
L L RS KYGKL G LLTV P L++R K HF +L G +I+GCNG++WV
Sbjct: 164 -LHLQARSQKYGKLSTGQLLTVTPYLVKRQKQHFHHLEQYGIDLIIGCNGFIWV 216
>gi|303310595|ref|XP_003065309.1| exosome complex exonuclease RRP4, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240104971|gb|EER23164.1| exosome complex exonuclease RRP4, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320034855|gb|EFW16798.1| exosome complex exonuclease Rrp4 [Coccidioides posadasii str.
Silveira]
Length = 373
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 146/282 (51%), Gaps = 45/282 (15%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPD-------------DEEIKASVGGVVEKVNQLVSVRAM 78
I+TPGE V +M GHGTF I A+V G V K N+L+SV +
Sbjct: 51 IVTPGEVVTDDPQWMRGHGTFTPAPPGISSTAQSSLSSTIIATVAGTVLKTNKLLSVYPL 110
Query: 79 NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMR 138
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG R+R+ DE +R
Sbjct: 111 RARYNPEIGDLVVGRIVEVQSRRWKVDVAAPLLANLPLSAINLPGGILRKRTTADELQIR 170
Query: 139 EFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----------PSLIRRS 188
F EGDL+ AE+ + +GS +LHTRSLKYGKL GI L V ++R
Sbjct: 171 SFFNEGDLVVAEVQSVHQDGSASLHTRSLKYGKLRNGIFLAVAGMGGAGVARGTGVVRSR 230
Query: 189 KSHF----CNLACGAQVILGCNGYVWVS-----AIDENKSGGFIQNME------------ 227
+ + N +VILG NGY+W+S A +++ G I +E
Sbjct: 231 RQVWTVPGANGGSDIEVILGVNGYIWISKRADVAAEDSGMGMSITRLEDMVSGTMYSSQN 290
Query: 228 -VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+ L+ R I RL I+ L + + + + ++ AY SL+
Sbjct: 291 DEISLATRREIARLAGCIRVLVQGGIKVDEDTVMKAYATSLE 332
>gi|392862505|gb|EAS36846.2| exosome complex exonuclease Rrp4 [Coccidioides immitis RS]
Length = 373
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 146/282 (51%), Gaps = 45/282 (15%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPD-------------DEEIKASVGGVVEKVNQLVSVRAM 78
I+TPGE V +M GHGTF I A+V G V K N+L+SV +
Sbjct: 51 IVTPGEVVTDDPQWMRGHGTFTPAPPGFSSTAQSSLSSTIIATVAGTVLKTNKLLSVYPL 110
Query: 79 NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMR 138
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG R+R+ DE +R
Sbjct: 111 RARYNPEIGDLVVGRIVEVQSRRWKVDVAAPLLANLPLSAINLPGGILRKRTTADELQIR 170
Query: 139 EFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----------PSLIRRS 188
F EGDL+ AE+ + +GS +LHTRSLKYGKL GI L V ++R
Sbjct: 171 SFFNEGDLVVAEVQSVHQDGSASLHTRSLKYGKLRNGIFLAVAGMGGAGVARGTGVVRSR 230
Query: 189 KSHF----CNLACGAQVILGCNGYVWVS-----AIDENKSGGFIQNME------------ 227
+ + N +VILG NGY+W+S A +++ G I +E
Sbjct: 231 RQVWTVPGANGGSDIEVILGVNGYIWISKRADVAAEDSGMGMSITRLEDMVSGTMYSSQN 290
Query: 228 -VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+ L+ R I RL I+ L + + + + ++ AY SL+
Sbjct: 291 DEISLATRREIARLAGCIRVLVQGGIKVDEDTVMKAYATSLE 332
>gi|350631728|gb|EHA20099.1| hypothetical protein ASPNIDRAFT_130155 [Aspergillus niger ATCC
1015]
Length = 741
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 148/294 (50%), Gaps = 57/294 (19%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
+LTPGE V +M GHGT+ P I A+V G V+K N+L+SV+ + +RY EIG++
Sbjct: 410 VLTPGEIVTDDPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDL 469
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R F EGDL+ A
Sbjct: 470 VVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVA 529
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVP---------------------------- 181
E+ + ++G +LHTRSLKYGKL G+ L V
Sbjct: 530 EVQTVHSDGGASLHTRSLKYGKLRNGVFLAVTGTGGSGASSSSVKGTSGASATGAGAGGA 589
Query: 182 ---PSLIR-RSKSHFCNLACGA---QVILGCNGYVWVS--AIDENKSGGFIQNMEVVKLS 232
++R R + N A G VILG NGY+W+S A + +N+ + ++
Sbjct: 590 AGAGGVVRSRRQVWTINTANGGGDVDVILGVNGYIWISKHADGAAAASSTTENVSITRME 649
Query: 233 D------------------RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+ R I RL I+ L V + + ++ AYE SL+
Sbjct: 650 EMVSSSIYSSQNDDIPPQTRREIARLAQCIRVLVNGGVRVDEETVMGAYEASLQ 703
>gi|449019924|dbj|BAM83326.1| exosome complex exonuclease Rrp4 [Cyanidioschyzon merolae strain
10D]
Length = 305
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 146/261 (55%), Gaps = 17/261 (6%)
Query: 35 PGETVEYLE-GYMTGHGTF--PDDEE--IKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
PG+ + E + GHG F P DE ++A++ G VE++N+LV++R+ RY+ +G+V
Sbjct: 34 PGDAIYAPEQNTLRGHGIFWTPSDESKVLRATLAGTVERINKLVTIRSWRGRYVPNVGDV 93
Query: 90 VVGRVTGL--QSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
VVGR+ + S++W VD + ++ L L ++ LPG QRRR+ +DE MR F E DLI
Sbjct: 94 VVGRIAQVLPASRRWKVDIQARQDAVLTLFAIRLPGAVQRRRTREDELNMRAFYAETDLI 153
Query: 148 SAEIHQISTEGSLTLHTR-SLKYGKLGQ-GILLTVPPSLIRRSKSHFCNLACG-AQVILG 204
+AE+ +I +GS+ LHTR K+G+L Q G+ ++VPP LIRR+ F +L V+LG
Sbjct: 154 AAEVQEIKADGSIMLHTRLEDKFGRLSQFGVFVSVPPGLIRRTGRAFASLGYPHLWVVLG 213
Query: 205 CNGYVWVSAIDE--NKSGGFIQNMEVVKLS-----DRETITRLNNVIKALAESKVMLFDT 257
NGY+W+ E +++G E S D E + R N + L+ + +
Sbjct: 214 VNGYIWIYWNPEETDRAGAVADEAEPTSTSLLTTGDAEALCRARNAVLVLSMLSLNVSIE 273
Query: 258 SIQYAYEESLKYSTYDLLKPE 278
SI+Y + +L+P
Sbjct: 274 SIRYVFAAGAVTDPAAMLEPR 294
>gi|294462385|gb|ADE76741.1| unknown [Picea sitchensis]
Length = 328
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 137/252 (54%), Gaps = 24/252 (9%)
Query: 43 EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKW 102
EG + GHGT + E+ A++ GVVE+VN+LV VR + +RY E G++VVGRV + S++W
Sbjct: 48 EGILKGHGTADLNGEVVATLCGVVERVNKLVLVRTLRARYKPENGDIVVGRVFEVASKRW 107
Query: 103 VVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTL 162
+VD N + L L+S+NLP G QRRR+ DE MR +E D+I AE+ +GSL L
Sbjct: 108 LVDINFNQAALLMLSSMNLPDGIQRRRTAVDELSMRSMFEENDVICAEVRGFQHDGSLHL 167
Query: 163 HTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWVS--------- 212
RSLKYGKL G L+T L++R K HF +L G +ILG NGY+WV
Sbjct: 168 QARSLKYGKLENGQLITTSAYLVKRRKQHFHHLEQYGVDMILGLNGYIWVGVHTDVPNLE 227
Query: 213 AIDENKSGGFIQNMEVVKLSD--------------RETITRLNNVIKALAESKVMLFDTS 258
E ++G +VK S RE I RL N I+ L+ L
Sbjct: 228 GQGEEENGSEQSTKSIVKSSGDATDGKKDSTSLRVRENICRLANAIRVLSSLGFSLSLEL 287
Query: 259 IQYAYEESLKYS 270
I +E S+ ++
Sbjct: 288 ILDTFETSIDWN 299
>gi|225685150|gb|EEH23434.1| 3'-5'-exoribonuclease [Paracoccidioides brasiliensis Pb03]
Length = 376
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 155/314 (49%), Gaps = 57/314 (18%)
Query: 11 EIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTF------------------ 52
++ ++ D P + I+TPGE + +M GHGT+
Sbjct: 28 DVDMSGDHSRPAKRLRLSKGAIVTPGEVITDDPQWMRGHGTYTRSAHNPYSTTTTATNPS 87
Query: 53 PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILES 112
I A+V G V K N+L+SV+ + +RY EIG++VVGR+ +QS++W VD + L +
Sbjct: 88 ATSNTIIATVAGTVLKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLA 147
Query: 113 ALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKL 172
L L+++NLPGG R+R+ DE +R F EGDL+ AE+ + +G+ +LHTRSLKYGKL
Sbjct: 148 QLPLSAINLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKL 207
Query: 173 GQGILLTVP----------PSLIRRSKSHFCNLACGA-----QVILGCNGYVWVS----- 212
G+ LTV + + RS+ L G VILG NGY+W+S
Sbjct: 208 RNGVFLTVAGMGAAGGVVRGTGVVRSRRQVWTLTAGNGGGEIDVILGVNGYIWISKHVVG 267
Query: 213 ---AIDENKSGGF---------------IQNMEVVKLSDRETITRLNNVIKALAESKVML 254
+D SG QN E + L+ R I RL I+ L E V +
Sbjct: 268 DGFGVDAASSGEVSITRMDEMVSSAIYSSQNDE-IGLATRREIARLCGCIRVLVEGNVKV 326
Query: 255 FDTSIQYAYEESLK 268
+ ++ AYE S++
Sbjct: 327 DEDTVMKAYEASME 340
>gi|406868726|gb|EKD21763.1| exosome complex exonuclease RRP4 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 573
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 148/268 (55%), Gaps = 27/268 (10%)
Query: 26 HEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
H ++TPG+TV +M GHGT+ EI A+V G ++K N+L+SVR + +RY
Sbjct: 279 HSSAKDLVTPGQTVTDDPQWMRGHGTYVASSSTEIIATVAGTIQKTNKLLSVRPLRARYT 338
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
EIG++VVGR+ +Q+++W VD + + + L L+++NLPGG R+R+ DE +R F E
Sbjct: 339 PEIGDLVVGRIVEVQAKRWRVDVGAPVLAGLPLSAINLPGGILRKRTDTDELQIRTFFSE 398
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC-------NLA 196
GDL+ AE+ + +GS +LHTRSLKYGKL G+ ++V ++
Sbjct: 399 GDLLIAEVQSLHQDGSASLHTRSLKYGKLRNGVFMSVSGVGGGGGVVRSRRQVWTIDTVS 458
Query: 197 CGAQV--ILGCNGYVWVSA-------------IDENKSGGFI--QNMEVVKLSDRETITR 239
G QV +LG NGY+W+S ++EN S QN E+ + RE I+R
Sbjct: 459 GGGQVDIVLGVNGYIWISKHVEVAGGDTAITRMEENISSTVYSSQNDEIGPDTRRE-ISR 517
Query: 240 LNNVIKALAESKVMLFDTSIQYAYEESL 267
+ VI L E + + + + YE ++
Sbjct: 518 IRGVINLLVEEGIRIDEDMVTKGYEAAV 545
>gi|452983151|gb|EME82909.1| hypothetical protein MYCFIDRAFT_164219 [Pseudocercospora fijiensis
CIRAD86]
Length = 290
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 148/264 (56%), Gaps = 29/264 (10%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEE----IKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
+TPG+ + +M GHGTF ++ I++++ G ++K N+L+SV + +RY E+G+
Sbjct: 1 MTPGQIITTDPQWMRGHGTFAAADDTAAAIRSTLAGTIQKTNKLISVVPLRARYNPEVGD 60
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
+V+GR+ +QS++W VD + + + L L+S+NLPGG R+R+ DE +R F EG+LI
Sbjct: 61 LVIGRIVEVQSRRWKVDVAAPVLAVLQLSSINLPGGALRKRTSVDELNIRSFFGEGELIV 120
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----PSLIRRSKSHFCNLACG----AQ 200
AE+ + +GS LHTRSLKYGKL G + V + RSK L
Sbjct: 121 AEVQNLFHDGSAALHTRSLKYGKLRNGYFMAVSGMGGGMGVVRSKRQIFTLQTSRGGEVD 180
Query: 201 VILGCNGYVW--------------VSAIDENKSGGF--IQNMEVVKLSDRETITRLNNVI 244
V+LG NGYVW ++ ++E S G QN E+ + RE I R+ I
Sbjct: 181 VMLGVNGYVWIEKHVQEQSSQDVGINRLEETASIGMYSTQNDEISPDTRRE-IARVAGCI 239
Query: 245 KALAESKVMLFDTSIQYAYEESLK 268
KAL E V + + +++ AY+ SL+
Sbjct: 240 KALVEGSVKVEEHTVRRAYDASLE 263
>gi|46136891|ref|XP_390137.1| hypothetical protein FG09961.1 [Gibberella zeae PH-1]
Length = 331
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 144/265 (54%), Gaps = 27/265 (10%)
Query: 30 DPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIG 87
D I TPG + +M GHGT+ D EI +S+ G + K N+L+SVR + +RY EIG
Sbjct: 39 DEIFTPGTVITSNSQWMRGHGTYIPADSSEITSSLAGTLTKTNKLLSVRPLRARYTPEIG 98
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
++VVGR+ +Q+++W VD + + L ++++NLPGG R+R+ DE +R F EGDL+
Sbjct: 99 DLVVGRIVEVQAKRWRVDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLV 158
Query: 148 SAEIHQISTEGSLTLHTRSLKYGKLGQGILLT----VPPSLIRRSKSH-----FCNLACG 198
AE+ Q+ +G+ +LHTRSLKYGKL G+ + RSK N
Sbjct: 159 VAEVQQLHQDGAASLHTRSLKYGKLRNGVFAAVTGTGGGGGVVRSKRQVWTMDVANAGGK 218
Query: 199 AQVILGCNGYVWVSAIDENKS---GGFIQNME-------------VVKLSDRETITRLNN 242
V+LG NGY+W+S E+++ I ME + ++ I R+ +
Sbjct: 219 VDVLLGVNGYIWISKHIESETAAEAAGINRMEETVSSKVYSSQNDPMDVATMREIARIRS 278
Query: 243 VIKALAESKVMLFDTSIQYAYEESL 267
VI AL E+ + + + ++ Y E++
Sbjct: 279 VILALVENGLKVDEDTVTRGYGEAV 303
>gi|408396755|gb|EKJ75909.1| hypothetical protein FPSE_03857 [Fusarium pseudograminearum CS3096]
Length = 331
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 144/265 (54%), Gaps = 27/265 (10%)
Query: 30 DPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIG 87
D I TPG + +M GHGT+ D EI +S+ G + K N+L+SVR + +RY EIG
Sbjct: 39 DEIFTPGTVITSNSQWMRGHGTYIPADSSEITSSLAGTLTKTNKLLSVRPLRARYTPEIG 98
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
++VVGR+ +Q+++W VD + + L ++++NLPGG R+R+ DE +R F EGDL+
Sbjct: 99 DLVVGRIVEVQAKRWRVDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLV 158
Query: 148 SAEIHQISTEGSLTLHTRSLKYGKLGQGILLT----VPPSLIRRSKSH-----FCNLACG 198
AE+ Q+ +G+ +LHTRSLKYGKL G+ + RSK N
Sbjct: 159 VAEVQQLHQDGAASLHTRSLKYGKLRNGVFAAVTGTGGGGGVVRSKRQVWTMDVANAGGK 218
Query: 199 AQVILGCNGYVWVSAIDENKS---GGFIQNME-------------VVKLSDRETITRLNN 242
V+LG NGY+W+S E+++ I ME + ++ I R+ +
Sbjct: 219 VDVLLGVNGYIWISKHIESETAAEAAGINRMEETVSSKVYSSQNDPMDVATMREIARIRS 278
Query: 243 VIKALAESKVMLFDTSIQYAYEESL 267
VI AL E+ + + + ++ Y E++
Sbjct: 279 VILALVENGLKVDEDTVTRGYGEAV 303
>gi|452844533|gb|EME46467.1| hypothetical protein DOTSEDRAFT_70462 [Dothistroma septosporum
NZE10]
Length = 338
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 154/275 (56%), Gaps = 26/275 (9%)
Query: 19 IDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEE----IKASVGGVVEKVNQLVS 74
ID L H + I+TPG+ V +M GHGTF D + I++++ G ++K N+L+S
Sbjct: 39 IDDLPSGHRKSTNIITPGQIVTDDPQWMRGHGTFASDTDTSTIIRSTLAGTLQKTNKLLS 98
Query: 75 VRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE 134
V + +RY EIG++V+GR+ +QS++W VD + L + L L+S+NLPGG R+R+ DE
Sbjct: 99 VVPLRARYTPEIGDLVIGRIVEVQSRRWKVDVAAPLLANLLLSSINLPGGILRKRTSVDE 158
Query: 135 EMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILL----TVPPSLIRRSKS 190
+R F EG+L+ AE+ + +GS +LHTRSLKYGKL G + + + RSK
Sbjct: 159 LNIRSFFGEGELLVAEVQSLFQDGSASLHTRSLKYGKLRNGYFMAVSGVGGGAGVVRSKR 218
Query: 191 HFCNLACGA---QVILGCNGYVW------------VSAIDENKSGGFI--QNMEVVKLSD 233
+ A ILG NGY+W V+ ++E S G QN E+
Sbjct: 219 QIFTIHTRAGEVDCILGVNGYIWINKHIGEKEEVGVNRLEETASAGMYSSQNDEIPPEMR 278
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
RE I R+ + I+AL E + + + ++ AYE S++
Sbjct: 279 RE-IARIASCIRALVEGSLKVEEDGVRKAYEASIE 312
>gi|367041025|ref|XP_003650893.1| hypothetical protein THITE_2042530 [Thielavia terrestris NRRL 8126]
gi|346998154|gb|AEO64557.1| hypothetical protein THITE_2042530 [Thielavia terrestris NRRL 8126]
Length = 353
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 142/270 (52%), Gaps = 28/270 (10%)
Query: 29 TDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
T I+TPGE + +M GHGT+ P I +SV G + + N+L+SVR + +RY E+
Sbjct: 57 TSDIVTPGELITDDPQWMRGHGTYATPGTATIVSSVAGTISRTNKLLSVRPLRARYTPEV 116
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ +Q+++W VD S +AL L+++NLPGG R+R+ DE +R F EGDL
Sbjct: 117 GDLVVGRIVEVQARRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAEGDL 176
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKS---------HFCNLAC 197
+ AE+ Q+ +G LHTRSLKYGKL G+ + V N
Sbjct: 177 LVAEVQQLFADGGAVLHTRSLKYGKLRNGVFVAVSGMGGGGGVVRSRRQVWTMEAANGGG 236
Query: 198 GAQVILGCNGYVWVSAI-----DENKSGGFIQNMEVVKL------SDR------ETITRL 240
V+LG NGYVW+S ENK+ G E V +DR I RL
Sbjct: 237 QIDVVLGVNGYVWISKHVETPEGENKAVGITSMEESVSANMYSSQNDRIEVQTMREIARL 296
Query: 241 NNVIKALAESKVMLFDTSIQYAYEESLKYS 270
V+ AL E+ + + + + Y E+++ +
Sbjct: 297 RGVVTALVENGLRVDEDMVVRGYHEAVEMA 326
>gi|121704686|ref|XP_001270606.1| exosome complex exonuclease Rrp4, putative [Aspergillus clavatus
NRRL 1]
gi|119398752|gb|EAW09180.1| exosome complex exonuclease Rrp4, putative [Aspergillus clavatus
NRRL 1]
Length = 387
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 151/302 (50%), Gaps = 56/302 (18%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMN 79
L+E + I+TPG+ V +M GHGT+ P I A+V G V+K N+L+SV+ +
Sbjct: 49 LVEGTKVGAGIVTPGDVVTDDPQWMRGHGTYANPLSTSIIATVAGTVQKTNKLLSVQPLR 108
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R
Sbjct: 109 ARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRT 168
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILL--------------------- 178
F EGDL+ AE+ + ++G+ +LHTRSLKYGKL G+ L
Sbjct: 169 FFSEGDLVVAEVQSVHSDGAASLHTRSLKYGKLRNGVFLAVAGTGGSGASSSTVKGAAGT 228
Query: 179 -TVPPSL-----IRRSKSHFCNLACG-----AQVILGCNGYVWVSAIDENKSGG------ 221
T P + RS+ +++ +ILG NGY+W+ + + +
Sbjct: 229 GTAPAGTSGTGGVVRSRRQVWSISTANGGGDVNIILGVNGYIWIEKLADGAAAASSTTES 288
Query: 222 ---------------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
QN E+ + RE I RL I L + + + ++ AYE S
Sbjct: 289 VSITRMEEMVSSSIYSSQNDEIPPQTRRE-IARLAQCIHVLVHGGIRVDEDTVMAAYEAS 347
Query: 267 LK 268
L+
Sbjct: 348 LQ 349
>gi|295663366|ref|XP_002792236.1| exosome complex exonuclease RRP4 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279411|gb|EEH34977.1| exosome complex exonuclease RRP4 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 364
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 155/311 (49%), Gaps = 54/311 (17%)
Query: 11 EIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEE------------- 57
++ ++ D P + I+TPGE + +M GHGT+
Sbjct: 19 DVDMSGDHSRPAKRLRLSKGAIVTPGEVITDDPQWMRGHGTYTRSAHNPYSTTTTNPSTT 78
Query: 58 ---IKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESAL 114
I A+V G V K N+L+SV+ + +RY EIG++VVGR+ +QS++W VD + L + L
Sbjct: 79 SNTIIATVAGTVLKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQL 138
Query: 115 HLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQ 174
L+++NLPGG R+R+ DE +R F EGDL+ AE+ + +G+ +LHTRSLKYGKL
Sbjct: 139 PLSAINLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRN 198
Query: 175 GILLTVP----------PSLIRRSKSHFCNLACGA-----QVILGCNGYVWVSA------ 213
G+ LTV + + RS+ L G VILG NGY+W+S
Sbjct: 199 GVFLTVAGMGAAGGVVRGTGVVRSRRQVWTLTAGNGGGEIDVILGVNGYIWISKHVGDGF 258
Query: 214 --------------IDENKSGGFI--QNMEVVKLSDRETITRLNNVIKALAESKVMLFDT 257
+DE S QN E + L+ R I RL I+ L E V + +
Sbjct: 259 GVDSASSWDVSITRMDEMVSSAIYSSQNDE-IGLATRREIARLCGCIRVLVEGNVKVDED 317
Query: 258 SIQYAYEESLK 268
++ AYE S++
Sbjct: 318 TVMKAYEASME 328
>gi|294460073|gb|ADE75619.1| unknown [Picea sitchensis]
Length = 328
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 136/252 (53%), Gaps = 24/252 (9%)
Query: 43 EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKW 102
EG + GHGT + E+ A++ GVVE+VN+LV VR + RY E G++VVGRV + S++W
Sbjct: 48 EGILKGHGTADLNGEVVATLCGVVERVNKLVLVRTLRVRYKPENGDIVVGRVFEVASKRW 107
Query: 103 VVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTL 162
+VD N + L L+S+NLP G QRRR+ DE MR +E D+I AE+ +GSL L
Sbjct: 108 LVDINFNQAALLMLSSMNLPDGIQRRRTAVDELSMRSMFEENDVICAEVRGFQHDGSLHL 167
Query: 163 HTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWVS--------- 212
RSLKYGKL G L+T L++R K HF +L G +ILG NGY+WV
Sbjct: 168 QARSLKYGKLENGQLITTSAYLVKRRKQHFHHLEQYGVDMILGLNGYIWVGVHTDVPNLE 227
Query: 213 AIDENKSGGFIQNMEVVKLSD--------------RETITRLNNVIKALAESKVMLFDTS 258
E ++G +VK S RE I RL N I+ L+ L
Sbjct: 228 GQGEEENGSEQSTKSIVKSSGDATDGKKDSTSLRVRENICRLANAIRVLSSLGFSLSLEL 287
Query: 259 IQYAYEESLKYS 270
I +E S+ ++
Sbjct: 288 ILDTFETSIDWN 299
>gi|358395625|gb|EHK45012.1| hypothetical protein TRIATDRAFT_243019 [Trichoderma atroviride IMI
206040]
Length = 317
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 154/283 (54%), Gaps = 27/283 (9%)
Query: 14 LASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTF-P-DDEEIKASVGGVVEKVNQ 71
+A D+ D E + D ILTPG + +M GHGT+ P + I +S+ G + + N+
Sbjct: 9 IAQDQDDEFEEHGDARDEILTPGTVITSNSQWMRGHGTYLPLNTSSITSSLAGTLTRTNK 68
Query: 72 LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSV 131
L+SVR + +RY EIG++VVGR+ +Q+++W VD + + L ++++NLPGG R+R+
Sbjct: 69 LLSVRPLRARYNPEIGDLVVGRIVEVQAKRWRVDVAAAQLAILQISAINLPGGILRKRTE 128
Query: 132 QDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGIL----LTVPPSLIRR 187
DE +R F EGDL+ AE+ Q+ +G+ +LHTRSLKYGKL G+ T + + R
Sbjct: 129 TDELQIRSFFAEGDLLVAEVQQLHQDGAASLHTRSLKYGKLRNGVFVAVAGTGGGAGVVR 188
Query: 188 SKSHFCNL--ACGA---QVILGCNGYVWVSA---IDENKSGGFIQNMEV----------- 228
SK + A G V+LG NGY+W+S D I ME
Sbjct: 189 SKRQLWTMEAANGGGKIDVLLGVNGYIWISKHIESDAAAEAAGINRMEESVSSQIYSSQN 248
Query: 229 --VKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
+ ++ I R +VI AL E+ V + + ++ Y E++++
Sbjct: 249 NHMDVTTMREIARCRSVILALVENGVKVDEDTVTRGYNEAVEF 291
>gi|294897174|ref|XP_002775860.1| exosome complex exonuclease rrp4, putative [Perkinsus marinus ATCC
50983]
gi|239882213|gb|EER07676.1| exosome complex exonuclease rrp4, putative [Perkinsus marinus ATCC
50983]
Length = 332
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 137/240 (57%), Gaps = 19/240 (7%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
+ ++ PG+ + +GY+ G G P D ++ A+V G++E+VN+L+ +R + SRY GE
Sbjct: 33 YQRQLVLPGDVINADKGYLKGRGLLVDPVDGKLVATVRGILERVNKLLYIRPLKSRYTGE 92
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILE-SALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
+G+V+VGRV + +W++D +AL + VNLP GEQRRR+ D MR EG
Sbjct: 93 VGDVIVGRVAEVGGDRWMLDYGGGGSLAALPIGGVNLPQGEQRRRTDTDRMNMRAMFTEG 152
Query: 145 DLISAEIHQ-ISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC-NLAC---GA 199
DL+SAEI + +S G + LHTRS KYGKL G ++ V SL+RR SH NL
Sbjct: 153 DLLSAEIQKVVSDSGDVILHTRSAKYGKLYNGQMVRVSSSLVRRQSSHIVENLPAPFDHL 212
Query: 200 QVILGCNGYVWVSAIDENKSGGFIQNMEV---------VKLSDRETITRLNNVIKALAES 250
QV+LG NG++WV + K G IQ++ V + R+ I L I+AL S
Sbjct: 213 QVVLGLNGWIWVGM--KPKQSGHIQSINFTQTEKGFQEVDQASRQAIALLCACIEALGSS 270
>gi|167389163|ref|XP_001738843.1| rrp4 [Entamoeba dispar SAW760]
gi|165897732|gb|EDR24810.1| rrp4, putative [Entamoeba dispar SAW760]
Length = 263
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 133/237 (56%), Gaps = 14/237 (5%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+TPG+ + Y EG + G+G +D E + V G VE++N+LV V + SRY G +G+VVVG
Sbjct: 12 VTPGDEIFYEEGCIPGNGIRIEDNEFISCVHGTVERINKLVCVNPIRSRYCGNVGDVVVG 71
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + W VD N L ++S+NLP G QRRR+ D ++ F +LI AE+
Sbjct: 72 RIVSVGVGFWKVDINGKNNGLLQISSINLPDGIQRRRTEIDNLNIKTFFDVNELICAEVQ 131
Query: 153 QISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVS 212
++ + + LHTR+ +YGKL +GIL+ V PSLI+R KSH G + I G NGY+++S
Sbjct: 132 SMNGQSCIQLHTRNERYGKLNEGILIQVHPSLIKRCKSHITLFKNGIKFICGMNGYIFIS 191
Query: 213 AIDEN--KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
+E+ + GF E I R+ N + L + + +++ EE++
Sbjct: 192 LNNESDYSNVGF------------ERIARVANCVTILQNKTMHINGPIVEHLSEETI 236
>gi|340939389|gb|EGS20011.1| putative exosome complex protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 358
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 147/287 (51%), Gaps = 36/287 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE + +M GHGT+ P I +SV G + + N+L+SVR + +RY E+G++
Sbjct: 61 IVTPGELITTSPQFMRGHGTYIPPGTTSIISSVAGTILRTNKLLSVRPLRARYTPEVGDL 120
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q+++W VD S ++L L+++NLPGG R+R+ DE MR F EGDL+ A
Sbjct: 121 VVGRIIEVQARRWRVDVGSTQFASLPLSAINLPGGILRKRTETDELQMRSFFSEGDLLVA 180
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHF---------CNLACGAQ 200
E+ + +G LHTRSLKYGKL G+ + V N A
Sbjct: 181 EVQGVYGDGGAVLHTRSLKYGKLRNGVFVAVSGMGGGGGVVRSRRQVWTLEGANGAGLID 240
Query: 201 VILGCNGYVWVSAIDENKSG-----------------GFIQNM-----EVVKLSDRETIT 238
V+LG NGYVW++ E+ G G NM + ++ I
Sbjct: 241 VVLGVNGYVWIAKHTEDGPGEDPNASTKQVGITNLEEGMSANMYSSQNDRIEAETMREIA 300
Query: 239 RLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVL 285
RL V+ AL E+ + + + + Y E+++ + L+ PE D+ L
Sbjct: 301 RLRGVVMALVENGLRVDEDMVMRGYREAVEMA---LVSPEGPEDVYL 344
>gi|380491512|emb|CCF35268.1| exosome complex exonuclease RRP4 [Colletotrichum higginsianum]
Length = 344
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 149/262 (56%), Gaps = 26/262 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE + +M GHGT+ P EI +SV G V + N+L+SVR + +RY EIG++
Sbjct: 55 IVTPGEIITDDPQWMRGHGTYITPTTTEIVSSVAGTVTRTNKLLSVRPLRARYTPEIGDL 114
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q+++W VD S + L ++++NLPGG R+R+ DE +R F EGDL+ A
Sbjct: 115 VVGRIVEVQAKRWRVDVGSSQLAILQISAINLPGGILRKRTDTDELQIRSFFAEGDLVVA 174
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLT----VPPSLIRRSKSH--FCNLACGA---Q 200
E+ Q+ +G+ +LHTRSLKYGKL G+ + + R+K + A GA
Sbjct: 175 EVQQLHQDGAASLHTRSLKYGKLRNGVFVAVTGTGGGGGVVRAKRQQWVMDAARGASKVH 234
Query: 201 VILGCNGYVWVSA---IDENKSGGFIQNMEVVKLS---------DRET---ITRLNNVIK 245
V LG NG++W+S D +S G + E V + D ET + R+ +VI
Sbjct: 235 VTLGVNGFIWISKHVESDVPESVGLNRMEESVSANVYSSQNDRIDHETMREVARIRSVIL 294
Query: 246 ALAESKVMLFDTSIQYAYEESL 267
AL E+ + + + + Y+E++
Sbjct: 295 ALVENGLRVDEDMVVRGYKEAV 316
>gi|29150123|emb|CAD79683.1| related to 3'->5' exoribonuclease [Neurospora crassa]
Length = 387
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 149/280 (53%), Gaps = 33/280 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPD-----DEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE + +M GHGT+ ++ I +S+ G+V + N+L+SVR + +RY E+
Sbjct: 89 IVTPGERITTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSVRPLRARYTPEV 148
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ +Q+++W VD S +AL L+++NLPGG R+R+ DE +R F EGDL
Sbjct: 149 GDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAEGDL 208
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKS---------HFCNLAC 197
+ AE+ Q+ +G LHTRSLKYGKL G+ + V + N
Sbjct: 209 VVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQVWTLESANNGG 268
Query: 198 GAQVILGCNGYVWVS------AIDENKSGGFIQNMEVV-------KLSDR---ET---IT 238
VILG NGYVW+S +E K I N+E V +DR ET I
Sbjct: 269 PIDVILGVNGYVWISKHVEPVVPEEAKGQTGITNLEEVVSATMYSSQNDRIEPETMREIA 328
Query: 239 RLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPE 278
R+ V+ AL E+ + + + + Y E+++ + PE
Sbjct: 329 RIRGVVTALVENGLRVDEDMVTKGYNEAVELALVSADGPE 368
>gi|164426690|ref|XP_957624.2| hypothetical protein NCU04009 [Neurospora crassa OR74A]
gi|157071436|gb|EAA28388.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 360
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 149/280 (53%), Gaps = 33/280 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPD-----DEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE + +M GHGT+ ++ I +S+ G+V + N+L+SVR + +RY E+
Sbjct: 62 IVTPGERITTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSVRPLRARYTPEV 121
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ +Q+++W VD S +AL L+++NLPGG R+R+ DE +R F EGDL
Sbjct: 122 GDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAEGDL 181
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKS---------HFCNLAC 197
+ AE+ Q+ +G LHTRSLKYGKL G+ + V + N
Sbjct: 182 VVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQVWTLESANNGG 241
Query: 198 GAQVILGCNGYVWVS------AIDENKSGGFIQNMEVV-------KLSDR---ET---IT 238
VILG NGYVW+S +E K I N+E V +DR ET I
Sbjct: 242 PIDVILGVNGYVWISKHVEPVVPEEAKGQTGITNLEEVVSATMYSSQNDRIEPETMREIA 301
Query: 239 RLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPE 278
R+ V+ AL E+ + + + + Y E+++ + PE
Sbjct: 302 RIRGVVTALVENGLRVDEDMVTKGYNEAVELALVSADGPE 341
>gi|336260201|ref|XP_003344897.1| hypothetical protein SMAC_06183 [Sordaria macrospora k-hell]
gi|380089096|emb|CCC13040.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 385
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 33/280 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPD-----DEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE + +M GHGT+ ++ I +S+ G+V + N+L+SVR + +RY E+
Sbjct: 87 IVTPGERITTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSVRPLRARYTPEV 146
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ +Q+++W VD S +AL L+++NLPGG R+R+ DE +R F EGDL
Sbjct: 147 GDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAEGDL 206
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKS---------HFCNLAC 197
+ AE+ Q+ +G LHTRSLKYGKL G+ + V + N
Sbjct: 207 VVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQVWTLESANNGG 266
Query: 198 GAQVILGCNGYVWVS------AIDENKSGGFIQNMEVV-------KLSDR---ET---IT 238
+ILG NGYVW+S +E K I N+E V +DR ET I
Sbjct: 267 PIDIILGVNGYVWISKHVEPVVPEEAKGQTGITNIEEVVSATMYSSQNDRIEPETMREIA 326
Query: 239 RLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPE 278
R+ V+ AL E+ + + + + Y E+++ + PE
Sbjct: 327 RIRGVVTALVENGLRVDEDMVTKGYNEAVELALVSAEGPE 366
>gi|226294476|gb|EEH49896.1| exosome complex exonuclease RRP4 [Paracoccidioides brasiliensis
Pb18]
Length = 381
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 156/319 (48%), Gaps = 62/319 (19%)
Query: 11 EIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTF------------------ 52
++ ++ D P + I+TPGE + +M GHGT+
Sbjct: 28 DVDMSGDHSRPANRLRLSKGAIVTPGEVITDDPQWMRGHGTYTRSGHNPYSTTTTTTTTT 87
Query: 53 -----PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTN 107
I A+V G V K N+L+SV+ + +RY EIG++VVGR+ +QS++W VD
Sbjct: 88 ATNPSATSNTIIATVAGTVLKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVA 147
Query: 108 SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSL 167
+ L + L L+++NLPGG R+R+ DE +R F EGDL+ AE+ + +G+ +LHTRSL
Sbjct: 148 APLLAQLPLSAINLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSL 207
Query: 168 KYGKLGQGILLTVP----------PSLIRRSKSHFCNLACGA-----QVILGCNGYVWVS 212
KYGKL G+ LTV + + RS+ L G VILG NGY+W+S
Sbjct: 208 KYGKLRNGVFLTVAGMGAAGGVVRGTGVVRSRRQVWTLTAGNGGGEIDVILGVNGYIWIS 267
Query: 213 --------AIDENKSGGF---------------IQNMEVVKLSDRETITRLNNVIKALAE 249
+D SG QN E + L+ R I+RL I+ L E
Sbjct: 268 KHVVGDGFGVDAASSGEVSITRMDEMVSSAIYSSQNDE-IGLATRREISRLCGCIRVLVE 326
Query: 250 SKVMLFDTSIQYAYEESLK 268
V + + ++ AYE S++
Sbjct: 327 GNVKVDEDTVMKAYEASME 345
>gi|259485587|tpe|CBF82734.1| TPA: exosome complex exonuclease Rrp4, putative (AFU_orthologue;
AFUA_3G05860) [Aspergillus nidulans FGSC A4]
Length = 390
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 151/303 (49%), Gaps = 57/303 (18%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMT--------GHGTF--PDDEEIKASVGGVVEKVNQ 71
LIE + I+TPGE V +M GHGT+ P I A+V G V+K N+
Sbjct: 49 LIEGVDIGTGIITPGEVVTNDPQWMRLTSSLSSRGHGTYTNPLSTSIIATVAGTVQKTNK 108
Query: 72 LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSV 131
L+SV+ + +RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+
Sbjct: 109 LLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTS 168
Query: 132 QDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV----------- 180
DE +R F EGDL+ AE+ + ++G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 ADELQIRTFFSEGDLLVAEVQTVHSDGAASLHTRSLKYGKLRNGVFLAVAGTGGSGASSS 228
Query: 181 ----------PPSLIRRSKSHFC----NLACGAQVILGCNGYVWVSAIDENKSGG----- 221
++R + F N ++LG NGY+W+S E +
Sbjct: 229 STKGGLGSGSATGVVRSRRQMFTITTSNGGGDVDLVLGVNGYIWISKHVEGTAAASSATE 288
Query: 222 ----------------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
QN E+ + RE I RL I+ L + + + + ++ AY+
Sbjct: 289 HVSITRMEEMVSNSVYSSQNDEISPATRRE-IARLTQCIRVLVQGGLRVDEETVTAAYDA 347
Query: 266 SLK 268
SL+
Sbjct: 348 SLQ 350
>gi|322710146|gb|EFZ01721.1| putative 3'->5' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 150/273 (54%), Gaps = 29/273 (10%)
Query: 29 TDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
D ILTPG + +M GHGT+ + I +S+ G + K N+L+SVR + +RY EI
Sbjct: 54 ADEILTPGTIITSNPQWMRGHGTYLPASTQSITSSLAGTLTKTNKLLSVRPLRARYTPEI 113
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+T +Q+++W VD + + L ++++NLPGG R+R+ DE +R F EGDL
Sbjct: 114 GDLVVGRITEVQAKRWRVDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFSEGDL 173
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGIL----LTVPPSLIRRSKSHF-----CNLAC 197
+ AE+ Q+ +G+ +LHTRSLKYGKL G+ T + RSK N A
Sbjct: 174 VVAEVQQLHQDGAASLHTRSLKYGKLRNGVFVSVSGTGGGGGVVRSKRQVWTMEGANAAG 233
Query: 198 GAQVILGCNGYVWVSA---------------IDENKSGGFI--QNMEVVKLSDRETITRL 240
V+LG NGY+W+S ++E+ S QN ++ + RE I R+
Sbjct: 234 KIDVLLGVNGYIWISKHLDGEVAAEAAGINRMEESVSSRVYSSQNDDIDVATMRE-IARV 292
Query: 241 NNVIKALAESKVMLFDTSIQYAYEESLKYSTYD 273
VI AL E+ V + + + Y E+++ + D
Sbjct: 293 RCVILALVENGVRVDEDMVGRGYMEAVEMARED 325
>gi|403221661|dbj|BAM39793.1| conserved hypothetical protein [Theileria orientalis strain
Shintoku]
Length = 268
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
Query: 32 ILTPGETVEYLEGYM-TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
++ PG+ V Y+ GHGT E+KAS G+V+ VNQLV V + RY+G+IG++V
Sbjct: 6 LVLPGDVVSSDASYLLQGHGTHVSRNELKASYSGLVKHVNQLVYVEPFSGRYMGQIGDIV 65
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
+G V +Q KW +D NS+ + L + VN RR+ +D M + D+IS+E
Sbjct: 66 IGIVESIQGNKWFLDVNSVERAHLSILQVNTEELANRRKIDEDVYEMSNLFRVKDIISSE 125
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
I +IS G++ L TR+ KYG+L GIL+ V P+L+ R H ++ CG +VI+GCNGY+W
Sbjct: 126 IQRISPSGTIILQTRTSKYGRLDNGILVVVRPNLVMRQVKHIYDMECGVRVIMGCNGYIW 185
Query: 211 VSA 213
++
Sbjct: 186 LTT 188
>gi|303274582|ref|XP_003056609.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462693|gb|EEH59985.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 307
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 148/270 (54%), Gaps = 25/270 (9%)
Query: 32 ILTPGETV----EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIG 87
++ PGE V + G + GHGT + A++ G +E+V LVSVR Y E G
Sbjct: 25 LVAPGEDVRVGHQTRGGLLRGHGTILVSDRFTATICGTIERVGNLVSVRPFRCTYKPETG 84
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
+VV+GRV + W +D NS +++LHL+++NLPGG RRR+ DE MR+ + DL+
Sbjct: 85 DVVLGRVIERAGKCWKLDINSWQDASLHLSAINLPGGIPRRRNADDELNMRQLYDDDDLV 144
Query: 148 SAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHF---C-NLACGAQVIL 203
SAE+ + +G++ LHTR KYG + G L++V P L++R+++HF C +L ++++
Sbjct: 145 SAEVQSVHRDGTVMLHTRGPKYGCMSLGQLISVVPVLVKRAETHFHRVCSDLKTDIEILI 204
Query: 204 GCNGYVWV-------------SAIDENKSGGFIQNM--EVVKLSDRETITRLNNVIKALA 248
GCNGY+WV + +N +GG + + V R+ + R+ + ++ L+
Sbjct: 205 GCNGYIWVGLKHSACFTHDPECSKSQNNTGGCEREVFSTSVNAHTRDQVCRVASAVRVLS 264
Query: 249 ESKVMLFDTSIQYAYEESLKY--STYDLLK 276
+ ++ I + S + S D+L+
Sbjct: 265 MLHLAIYPKRILDVVDRSNDWGVSNTDMLR 294
>gi|67525937|ref|XP_661030.1| hypothetical protein AN3426.2 [Aspergillus nidulans FGSC A4]
gi|40743715|gb|EAA62903.1| hypothetical protein AN3426.2 [Aspergillus nidulans FGSC A4]
Length = 753
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 151/303 (49%), Gaps = 57/303 (18%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMT--------GHGTF--PDDEEIKASVGGVVEKVNQ 71
LIE + I+TPGE V +M GHGT+ P I A+V G V+K N+
Sbjct: 412 LIEGVDIGTGIITPGEVVTNDPQWMRLTSSLSSRGHGTYTNPLSTSIIATVAGTVQKTNK 471
Query: 72 LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSV 131
L+SV+ + +RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG RRR+
Sbjct: 472 LLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTS 531
Query: 132 QDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV----------- 180
DE +R F EGDL+ AE+ + ++G+ +LHTRSLKYGKL G+ L V
Sbjct: 532 ADELQIRTFFSEGDLLVAEVQTVHSDGAASLHTRSLKYGKLRNGVFLAVAGTGGSGASSS 591
Query: 181 ----------PPSLIRRSKSHF----CNLACGAQVILGCNGYVWVSAIDENKSGG----- 221
++R + F N ++LG NGY+W+S E +
Sbjct: 592 STKGGLGSGSATGVVRSRRQMFTITTSNGGGDVDLVLGVNGYIWISKHVEGTAAASSATE 651
Query: 222 ----------------FIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
QN E+ + RE I RL I+ L + + + + ++ AY+
Sbjct: 652 HVSITRMEEMVSNSVYSSQNDEISPATRRE-IARLTQCIRVLVQGGLRVDEETVTAAYDA 710
Query: 266 SLK 268
SL+
Sbjct: 711 SLQ 713
>gi|336466318|gb|EGO54483.1| hypothetical protein NEUTE1DRAFT_124724 [Neurospora tetrasperma
FGSC 2508]
Length = 387
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 33/280 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPD-----DEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE + +M GHGT+ ++ I +S+ G+V + N+L+SVR + +RY E+
Sbjct: 89 IVTPGERITTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSVRPLRARYTPEV 148
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ +Q+++W VD S +AL L+++NLPGG R+R+ DE +R F EGDL
Sbjct: 149 GDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAEGDL 208
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKS---------HFCNLAC 197
+ AE+ Q+ +G LHTRSLKYGKL G+ + V + N
Sbjct: 209 VVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQVWTLESANNGG 268
Query: 198 GAQVILGCNGYVWVS------AIDENKSGGFIQNMEVV-------KLSDR---ET---IT 238
VILG NGYVW+S +E K I N+E V +DR ET I
Sbjct: 269 PIDVILGVNGYVWISKHVEPVVPEEAKGQTGITNLEEVVSATMYSSQNDRIEPETMREIA 328
Query: 239 RLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPE 278
R+ V+ AL E+ + + + + Y E+++ + P+
Sbjct: 329 RIRGVVTALVENGLRVDEDMVTKGYNEAVELALVSADGPD 368
>gi|350286819|gb|EGZ68066.1| hypothetical protein NEUTE2DRAFT_160508 [Neurospora tetrasperma
FGSC 2509]
Length = 487
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 33/280 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPD-----DEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE + +M GHGT+ ++ I +S+ G+V + N+L+SVR + +RY E+
Sbjct: 189 IVTPGERITTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSVRPLRARYTPEV 248
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ +Q+++W VD S +AL L+++NLPGG R+R+ DE +R F EGDL
Sbjct: 249 GDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAEGDL 308
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKS---------HFCNLAC 197
+ AE+ Q+ +G LHTRSLKYGKL G+ + V + N
Sbjct: 309 VVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQVWTLESANNGG 368
Query: 198 GAQVILGCNGYVWVS------AIDENKSGGFIQNMEVV-------KLSDR---ET---IT 238
VILG NGYVW+S +E K I N+E V +DR ET I
Sbjct: 369 PIDVILGVNGYVWISKHVEPVVPEEAKGQTGITNLEEVVSATMYSSQNDRIEPETMREIA 428
Query: 239 RLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPE 278
R+ V+ AL E+ + + + + Y E+++ + P+
Sbjct: 429 RIRGVVTALVENGLRVDEDMVTKGYNEAVELALVSADGPD 468
>gi|310792841|gb|EFQ28302.1| exosome complex exonuclease RRP4 [Glomerella graminicola M1.001]
Length = 344
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 150/263 (57%), Gaps = 26/263 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE + +M GHGT+ P +I +SV G V + N+L+SVR + +RY EIG++
Sbjct: 55 IVTPGEVITDDPQWMRGHGTYITPTTTDIVSSVAGTVTRTNKLLSVRPLRARYTPEIGDL 114
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q+++W VD S + L ++++NLPGG R+R+ DE +R F EGDL+ A
Sbjct: 115 VVGRIVEVQAKRWRVDVGSSQLAILQISAINLPGGILRKRTDTDELQIRSFFAEGDLVVA 174
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLT----VPPSLIRRSKSH--FCNLACGA---Q 200
E+ Q+ +G+ +LHTRSLKYGKL G+ + + R+K + A GA
Sbjct: 175 EVQQLHQDGAASLHTRSLKYGKLRNGVFVAVTGTGGGGGVVRAKRQQWVMDAARGASKVH 234
Query: 201 VILGCNGYVWVSA---IDENKSGGFIQNMEVVKLS---------DRET---ITRLNNVIK 245
V LG NG++W+S D +S G + E V + D ET I R+ +VI
Sbjct: 235 VTLGVNGFIWISKHVESDVPESVGLNRMEESVSANVYSSQNDRIDTETMREIARIRSVIL 294
Query: 246 ALAESKVMLFDTSIQYAYEESLK 268
AL E+ + + + + Y+E+++
Sbjct: 295 ALVENGLRVEEDLVVRGYKEAVE 317
>gi|358389591|gb|EHK27183.1| hypothetical protein TRIVIDRAFT_33478 [Trichoderma virens Gv29-8]
Length = 331
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 144/270 (53%), Gaps = 27/270 (10%)
Query: 27 EFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
E D ILTPG + +M GHGT+ P+ I +S+ G + + N+L+SVR + +RY
Sbjct: 36 EIGDEILTPGTVITSNSQWMRGHGTYVPPNTTSITSSLAGTLTRTNKLLSVRPLRARYNP 95
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
EIG++VVGR+ +Q+++W VD + + L ++++NLPGG R+R+ DE +R F EG
Sbjct: 96 EIGDLVVGRIVEVQAKRWRVDVAAAQLAILQISAINLPGGILRKRTETDELQIRSFFAEG 155
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQ----GILLTVPPSLIRRSKSHF-----CNL 195
DL+ AE+ Q+ +G+ +LHTRSLKYGKL + T + RSK N
Sbjct: 156 DLLVAEVQQLHQDGAASLHTRSLKYGKLRNGVFVAVGGTGGGGGVVRSKRQLWTMETSNG 215
Query: 196 ACGAQVILGCNGYVWVSA---IDENKSGGFIQNME-------------VVKLSDRETITR 239
V+LG NGY+W+S D + I ME + + I R
Sbjct: 216 GSKIDVLLGVNGYIWISKHIESDVSAEAAGINRMEESVSSQIYSSQNNPIDVPTMREIAR 275
Query: 240 LNNVIKALAESKVMLFDTSIQYAYEESLKY 269
+VI AL E+ V + + ++ Y E++++
Sbjct: 276 CRSVITALVENGVKVDEDTVTRGYHEAVEF 305
>gi|357164734|ref|XP_003580149.1| PREDICTED: exosome complex component rrp4-like [Brachypodium
distachyon]
Length = 325
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 129/226 (57%), Gaps = 24/226 (10%)
Query: 43 EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS------RYIGEIGEVVVGRVTG 96
+ + GHG D E+ A++ GVVE+VN+LV VR + RY E+G+++VGRV
Sbjct: 48 DNILKGHGAADHDGEVVATLCGVVERVNKLVYVRTLRRGILSLFRYKPEVGDIIVGRVIE 107
Query: 97 LQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST 156
+ ++W ++ N ++ L L+S+NLP G QRRR+ DE MR +E D++ AE+
Sbjct: 108 IAPKRWRLEINFTQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVVCAEVRGFQH 167
Query: 157 EGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWVSA-- 213
+GSL L RS KYGKL +G LLTVP L++R K HF +L +ILGCNG++WV
Sbjct: 168 DGSLHLQARSQKYGKLQRGQLLTVPAYLVKRRKQHFHHLEQYDVDLILGCNGFIWVGQHV 227
Query: 214 -IDENKSGGFIQNMEVVKLSD----------RETITRLNNVIKALA 248
+ EN Q+ KLSD R+ I RL N ++ L+
Sbjct: 228 LVRENTELKEDQH----KLSDEVDTFTSIETRKHICRLANAVRVLS 269
>gi|154281095|ref|XP_001541360.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411539|gb|EDN06927.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 372
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 149/292 (51%), Gaps = 59/292 (20%)
Query: 32 ILTPGETVEYLEGYMTGHGTF-----------PDD-----EEIKASVGGVVEKVNQLVSV 75
I+TPGE V +M GHGTF P++ I A+V G V+K N+L+SV
Sbjct: 49 IVTPGEVVTDDPQWMRGHGTFTRAPHHPHYNPPNNPATTPNTIIATVAGTVQKTNKLLSV 108
Query: 76 RAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEE 135
+ + +RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG R+R+ DE
Sbjct: 109 QPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRKRTTADEL 168
Query: 136 MMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV--------------- 180
+R F EGDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 QIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLAVGGISVAGGVVRGSGV 228
Query: 181 ---PPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA-IDENKSGGFI------------- 223
+ + SH A VILG NGY+W++ + + GG +
Sbjct: 229 VRSRRQVWTFTASHG---AGEIDVILGVNGYIWIAKHVGDGDVGGTVAGDVSITRMEEMV 285
Query: 224 -------QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
QN E+ + RE I RL I+ L E V + + ++ AY SL+
Sbjct: 286 SSAIYSSQNDEIGPATRRE-IARLCGCIRVLVEGGVKVDEDTVMKAYSASLE 336
>gi|365760360|gb|EHN02086.1| Rrp4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 233
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 112/180 (62%), Gaps = 7/180 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + +M GHGT+ D +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 54 IVTPGELITDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVV 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-------ACGAQVILG 204
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL + G+ VI G
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNHNRGSRGSMVIYG 233
>gi|14250901|emb|CAC39255.1| Rrp4p homologue [Trypanosoma brucei]
Length = 301
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 145/254 (57%), Gaps = 14/254 (5%)
Query: 41 YLEGYMTGHGTFPDDEE--------IKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+L GY T G P+ I AS+ G+VE +++VSV+ M+SRY+ E+G++VVG
Sbjct: 29 FLRGYNTYEGNNPNGAAAAQEGGGEIIASINGMVEVTDRVVSVKGMSSRYVAEVGDIVVG 88
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
RV + +W VD + ++ + L +V PGG RRR DE MR EG+L+ AE+
Sbjct: 89 RVKEVCGNRWRVDVGAFQDAVMPLANVTEPGGILRRRGRSDELTMRNIFDEGELVVAEVQ 148
Query: 153 QISTEGSLTLHTRS-LKYGKLGQ-GILLTVPPSLIRRSKSHF-CNLACGAQVILGCNGYV 209
++S +G ++LHTRS KYGKL G+L+ + P+L++R K HF C ++LG NG +
Sbjct: 149 RVSQDGLISLHTRSGEKYGKLSDFGLLVLISPALVKRVKHHFMCLEFIHVNLVLGTNGAI 208
Query: 210 WVSAIDENKSGGFIQNMEVVKLSD-RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
WVS + ++ +D R +TR+ N I+ + ++ +FD SI+ A + S+
Sbjct: 209 WVSPATATTATESAKSAYDRFDADIRRAVTRVANCIRVMGNARFPVFDKSIEAAVKASID 268
Query: 269 Y--STYDLLKPESK 280
+ +++L P ++
Sbjct: 269 FVLGPFEILYPGNQ 282
>gi|322698336|gb|EFY90107.1| putative 3'->5' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 349
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 152/275 (55%), Gaps = 31/275 (11%)
Query: 29 TDPILTPGETVEYLEGYM--TGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
D ILTPG + +M +GHGT+ + I +S+ G + K N+L+SVR + +RY
Sbjct: 54 ADEILTPGTIITSNPQWMRASGHGTYLPASTQSITSSLAGTLTKTNKLLSVRPLRARYTP 113
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
EIG++VVGR+T +Q+++W VD + + L ++++NLPGG R+R+ DE +R F EG
Sbjct: 114 EIGDLVVGRITEVQAKRWRVDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFSEG 173
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGIL----LTVPPSLIRRSKSHF-----CNL 195
DL+ AE+ Q+ +G+ +LHTRSLKYGKL G+ T + RSK N
Sbjct: 174 DLVVAEVQQLHQDGAASLHTRSLKYGKLRNGVFVSVSGTGGGGGVVRSKRQVWTMEGANA 233
Query: 196 ACGAQVILGCNGYVWVSA---------------IDENKSGGFI--QNMEVVKLSDRETIT 238
A V+LG NGY+W+S ++E+ S QN ++ + RE I
Sbjct: 234 AGKIDVLLGVNGYIWISKHVDSEVAAEAAGINRMEESVSSRVYSSQNDDIDVATMRE-IA 292
Query: 239 RLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYD 273
R+ +VI AL E+ V + + + Y E+++ + D
Sbjct: 293 RVRSVILALVENGVRVDEDMVGRGYMEAVEMARED 327
>gi|72391592|ref|XP_846090.1| ribosomal RNA processing protein 4 [Trypanosoma brucei TREU927]
gi|62175654|gb|AAX69786.1| ribosomal RNA processing protein 4 [Trypanosoma brucei]
gi|70802626|gb|AAZ12531.1| ribosomal RNA processing protein 4 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 324
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 145/254 (57%), Gaps = 14/254 (5%)
Query: 41 YLEGYMTGHGTFPDDEE--------IKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+L GY T G P+ I AS+ G+VE +++VSV+ M+SRY+ E+G++VVG
Sbjct: 52 FLRGYNTYEGNNPNGAAAAQEGGGEIIASINGMVEVTDRVVSVKGMSSRYVAEVGDIVVG 111
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
RV + +W VD + ++ + L +V PGG RRR DE MR EG+L+ AE+
Sbjct: 112 RVKEVCGNRWRVDVGAFQDAVMPLANVTEPGGILRRRGRSDELTMRNIFDEGELVVAEVQ 171
Query: 153 QISTEGSLTLHTRS-LKYGKLGQ-GILLTVPPSLIRRSKSHF-CNLACGAQVILGCNGYV 209
++S +G ++LHTRS KYGKL G+L+ + P+L++R K HF C ++LG NG +
Sbjct: 172 RVSQDGLISLHTRSGEKYGKLSDFGLLVLISPALVKRVKHHFMCLEFIHVNLVLGTNGAI 231
Query: 210 WVSAIDENKSGGFIQNMEVVKLSD-RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
WVS + ++ +D R +TR+ N I+ + ++ +FD SI+ A + S+
Sbjct: 232 WVSPATATTATESAKSAYDRFDADIRRAVTRVANCIRVMGNARFPVFDKSIEAAVKASID 291
Query: 269 Y--STYDLLKPESK 280
+ +++L P ++
Sbjct: 292 FVLGPFEILYPGNQ 305
>gi|429862582|gb|ELA37224.1| exosome complex exonuclease rrp4 [Colletotrichum gloeosporioides
Nara gc5]
Length = 343
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 26/263 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE + +M GHGT+ P EI +SV G V + N+L+SVR + +RY EIG++
Sbjct: 54 IVTPGEVITDDPQWMRGHGTYITPSTTEIVSSVAGTVTRTNKLLSVRPLRARYTPEIGDL 113
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q+++W VD S + L ++++NLPGG R+R+ DE +R F EGDL+ A
Sbjct: 114 VVGRIVEVQAKRWRVDVGSSQLAILQISAINLPGGILRKRTDTDELQIRSFFAEGDLVVA 173
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLT----VPPSLIRRSKSH--FCNLACGA---Q 200
E+ Q+ +G+ +LHTRSLKYGKL G+ + R+K + A GA
Sbjct: 174 EVQQLHQDGAASLHTRSLKYGKLRNGVFCAVTGTGGGGGVVRAKRQQWVMDAARGAAKVH 233
Query: 201 VILGCNGYVWVSAIDEN---KSGGFIQNMEVVKLS---------DRET---ITRLNNVIK 245
+ LG NG++W++ E+ +S G + E V + D ET I R+ +VI
Sbjct: 234 LTLGVNGFIWIAKHVESEMPESVGLNRMEESVSANVYSSQNDQIDVETMREIARIRSVIL 293
Query: 246 ALAESKVMLFDTSIQYAYEESLK 268
AL E+ + + + + Y+E+++
Sbjct: 294 ALVENGLRVDEDLVVRGYKEAVE 316
>gi|429963289|gb|ELA42833.1| hypothetical protein VICG_00148 [Vittaforma corneae ATCC 50505]
Length = 224
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 116/183 (63%), Gaps = 2/183 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVV 90
PG+ V EGY+ GHGT ++I ++ G V ++N+L+++ + S RY E+G+VV
Sbjct: 4 FFLPGDCVCENEGYIKGHGTEQIGDKIYSNYFGTVNQINKLITIAPVFSVRYTPEVGDVV 63
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGRV + S+KW VDTN ++ L L ++NLPG QRR+S +DE M ++ D+I E
Sbjct: 64 VGRVIQIYSKKWKVDTNCRSDTTLSLGAINLPGVMQRRKSEEDEINMSKYFDINDVIVCE 123
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ +++ GS LHTRS KYG+L G+L+ V P L+ +KS F G ++ GCNG++W
Sbjct: 124 VQKVNKNGSAALHTRSDKYGRLSNGVLINVSPDLLVATKSRFIAKG-GVEITSGCNGHIW 182
Query: 211 VSA 213
+S+
Sbjct: 183 ISS 185
>gi|171677939|ref|XP_001903920.1| hypothetical protein [Podospora anserina S mat+]
gi|170937038|emb|CAP61697.1| unnamed protein product [Podospora anserina S mat+]
Length = 358
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 141/263 (53%), Gaps = 32/263 (12%)
Query: 35 PGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
P + +M GHGT+ P I +S+ G+ + N+L+SV + +RY E+G++VVG
Sbjct: 67 PAPSSPQTPKWMRGHGTYIPPSTTNITSSLAGITTRTNKLISVSPLRARYTPEVGDLVVG 126
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ +Q+++W VD NSI ++L L+++NLPGG R+R+ DE +R F EGDL+ AE+
Sbjct: 127 RILEVQAKRWRVDINSIQLASLPLSAINLPGGILRKRTETDELQIRTFFAEGDLVVAEVQ 186
Query: 153 QISTEGSLTLHTRSLKYGKLGQGILLTV----PPSLIRRSKSHFC-----NLACGAQVIL 203
Q+ +G LHTRSLKYGKL G+ + + S + RS+ N VIL
Sbjct: 187 QLFQDGGAILHTRSLKYGKLRNGLFVALSGQGGGSGVVRSRRQVWTMEGQNGGGKMDVIL 246
Query: 204 GCNGYVWVSA------------------IDENKSGGFI--QNMEVVKLSDRETITRLNNV 243
G NGYVW+S ++EN S G QN + + RE I RL NV
Sbjct: 247 GVNGYVWISKHVEQVAKELEQKHMGITNMEENVSAGVYSSQNDFIDSATMRE-IARLRNV 305
Query: 244 IKALAESKVMLFDTSIQYAYEES 266
+ AL E+ + + + Y E+
Sbjct: 306 VTALVENGCRVDEDMVIRGYAEA 328
>gi|71030016|ref|XP_764650.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351606|gb|EAN32367.1| hypothetical protein, conserved [Theileria parva]
Length = 263
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
Query: 32 ILTPGETVEYLEGYM-TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
++ PG+ V ++ GHGT+ D++++AS G V+ VNQLV V +Y+G+IG++V
Sbjct: 6 VVVPGDVVSSDSSFLLQGHGTYVSDKQLRASYLGSVKHVNQLVYVEPFGGKYVGQIGDIV 65
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
+G V +Q KW +D N++ + L + VN RR+ +D M D++S E
Sbjct: 66 IGVVDSIQGNKWFLDVNAVELAQLSILQVNTEELANRRKIDEDIYEMSNLFNVNDIVSCE 125
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
I +IS G++ L TR+ KYGKL GIL+ + P+L+ R H ++ CG ++ILGCNGY+W
Sbjct: 126 IQRISPTGTIMLQTRTSKYGKLENGILVKIKPNLVIRKGKHIYDMECGVRIILGCNGYIW 185
Query: 211 VSA 213
+++
Sbjct: 186 LTS 188
>gi|240279317|gb|EER42822.1| exosome complex exonuclease RRP4 [Ajellomyces capsulatus H143]
gi|325089585|gb|EGC42895.1| exosome complex exonuclease RRP4 [Ajellomyces capsulatus H88]
Length = 372
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 146/290 (50%), Gaps = 57/290 (19%)
Query: 32 ILTPGETVEYLEGYMTGHGTF-----------PDD-----EEIKASVGGVVEKVNQLVSV 75
I+TPGE V +M GHGTF P++ I A+V G V+K N+L+SV
Sbjct: 49 IVTPGEVVTDDPQWMRGHGTFTRAAHHPHHTTPNNPATTPNTIIATVAGTVQKTNKLLSV 108
Query: 76 RAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEE 135
+ + +RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG R+R+ DE
Sbjct: 109 QPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRKRTTADEL 168
Query: 136 MMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV--------------- 180
+R F EGDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 QIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLAVGRISVAGGVVRGSGV 228
Query: 181 ---PPSLIRRSKSHFCNLACGAQVILGCNGYVWVS--AIDENKSGGFIQNMEVVKLSD-- 233
+ + SH A VILG NGY+W++ D + G N+ + ++ +
Sbjct: 229 VRSRRQVWTFTASHG---AGEIDVILGVNGYIWIAKHVGDGDLGGTAAGNVSITRMEEMV 285
Query: 234 ----------------RETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
R I RL I+ L E V + + ++ AY SL
Sbjct: 286 SSAIYSSQNDEIGPATRREIARLCGCIRVLVEGGVKVDEDTVMKAYSASL 335
>gi|225559582|gb|EEH07864.1| exosome complex exonuclease RRP4 [Ajellomyces capsulatus G186AR]
Length = 372
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 147/291 (50%), Gaps = 59/291 (20%)
Query: 32 ILTPGETVEYLEGYMTGHGTF-----------PDD-----EEIKASVGGVVEKVNQLVSV 75
I+TPGE V +M GHGTF P++ I A+V G V+K N+L+SV
Sbjct: 49 IVTPGEVVTDDPQWMRGHGTFTRAAHHPHHTTPNNPATTPNTIIATVAGTVQKTNKLLSV 108
Query: 76 RAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEE 135
+ + +RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG R+R+ DE
Sbjct: 109 QPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRKRTTADEL 168
Query: 136 MMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV--------------- 180
+R F EGDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 QIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLAVGGISVAGGVVRGSGV 228
Query: 181 ---PPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA-IDENKSGGFI------------- 223
+ + SH A VILG NGY+W++ + + GG
Sbjct: 229 VRSRRQVWTFTASHG---AGEIDVILGVNGYIWIAKHVGDGDLGGTAAGDVSITRMEEMV 285
Query: 224 -------QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
QN E+ + RE I RL I+ L E V + + ++ AY SL
Sbjct: 286 SSAIYSSQNDEIGPATRRE-IARLCGCIRVLVEGGVKVDEDTVMKAYSASL 335
>gi|340054841|emb|CCC49146.1| putative ribosomal RNA processing protein 4 [Trypanosoma vivax
Y486]
Length = 301
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 161/292 (55%), Gaps = 25/292 (8%)
Query: 20 DPLI-EIHEFTDPILTPGETVEYLEGYMTGHGTFPDDE--------EIKASVGGVVEKVN 70
DP+ +HE L E +L GY T G+ P+ EI +++ G+VE +
Sbjct: 10 DPICGSVHESK---LCVEEDCVFLRGYNTYEGSHPNKAAAAQEGGGEIVSAINGIVEITD 66
Query: 71 QLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRS 130
++VSV+ M SRY E+G++V+GRV + +W+VD + ++ + L++V PGG RR+
Sbjct: 67 RVVSVKGMASRYNAEVGDIVIGRVKEVNGNRWLVDIGAFQDAVMLLSNVTEPGGILRRKG 126
Query: 131 VQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRS-LKYGKLGQ-GILLTVPPSLIRRS 188
DE MR + +LI AE+ ++S +G + LHTRS +YG+L G+L+ V P+L++R
Sbjct: 127 RSDELTMRNIFDQSELIVAEVQRVSVDGIVFLHTRSGERYGRLNNVGVLVLVSPALVKRV 186
Query: 189 KSHFCNL-ACGAQVILGCNGYVWVSA---IDENKSGGFIQNMEVVKLSDRETITRLNNVI 244
K HF + + +++G NG ++VS +EN S N V + R +TR+ N I
Sbjct: 187 KHHFMTIDSLHIGLVVGTNGAIFVSGEKITEENSSNRL--NQHDVDVDIRRNVTRVANCI 244
Query: 245 KALAESKVMLFDTSIQYAYEESLKY--STYDLLKPESKLDLVLCTAQKLQTL 294
K + E++ +FD +I A + S+ + +D+L ++ L T L+T+
Sbjct: 245 KVMGEAQFPIFDRTIDAAVKTSIDFGLGPFDILSSSNRG---LITTTVLETM 293
>gi|407042623|gb|EKE41442.1| exosome complex exonuclease RRP4, putative [Entamoeba nuttalli P19]
Length = 263
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 14/237 (5%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+TPG+ + Y EG + G+G + E + V G VE++N+LV V + +RY G +G+VVVG
Sbjct: 12 VTPGDEIFYEEGCIPGNGILVEGNEFISCVHGTVERINKLVCVNPIRARYSGNVGDVVVG 71
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + W VD N L ++S+NLP G QRRR+ D ++ F +LI AE+
Sbjct: 72 RIVSVGVGFWKVDINGKNTGLLQISSINLPDGIQRRRTEIDNLNIKTFFDVNELICAEVQ 131
Query: 153 QISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVS 212
++ + + LHTR+ +YGKL +GIL+ V PSLI+R KSH G + I G NGY+++S
Sbjct: 132 SMNGQSCIQLHTRNERYGKLNEGILIQVHPSLIKRCKSHITLFKNGIKFICGMNGYIFIS 191
Query: 213 AIDEN--KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
+E+ + GF E + R+ N + L + + +++ EE++
Sbjct: 192 LNNESDYSNVGF------------ERVARVANCVTILQNKTMHINGPIVEHLSEETV 236
>gi|258566429|ref|XP_002583959.1| hypothetical protein UREG_06926 [Uncinocarpus reesii 1704]
gi|237907660|gb|EEP82061.1| hypothetical protein UREG_06926 [Uncinocarpus reesii 1704]
Length = 301
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 118/200 (59%), Gaps = 19/200 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPD-----DEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE V +M GHGTF I A+V G V K N+L+SV + +RY EI
Sbjct: 52 IVTPGEVVTDDPQWMRGHGTFTPATSSVPSTIIATVAGTVLKTNKLLSVYPLRARYNPEI 111
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++V+GR+ +QS++W VD + L + L L+++NLPGG R+R+ DE +R F EGDL
Sbjct: 112 GDLVIGRIVEVQSRRWKVDVAAPLLANLPLSAINLPGGILRKRTTADELQIRSFFNEGDL 171
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----PSLIR-----RSKSHF----- 192
+ AE+ + +GS +LHTRSLKYGKL GI L V ++R RS+
Sbjct: 172 LVAEVQSVHQDGSASLHTRSLKYGKLRNGIFLAVAGMGGAGVVRGTGVVRSRRQVWTVPG 231
Query: 193 CNLACGAQVILGCNGYVWVS 212
N +VILG NGY+W+S
Sbjct: 232 ANGGSDIEVILGVNGYIWIS 251
>gi|255945133|ref|XP_002563334.1| Pc20g08110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588069|emb|CAP86140.1| Pc20g08110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 391
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 147/298 (49%), Gaps = 61/298 (20%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE V +M GHGT+ P I A+V G V+K N+L+SV + +RY EIG++
Sbjct: 55 IVTPGEVVTDDPQWMRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVHPLRARYTPEIGDL 114
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R F EGDL+ A
Sbjct: 115 VVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVA 174
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSL------------------------- 184
E+ + +GS +LHTRSLKYGKL G+ L V +
Sbjct: 175 EVQSVHQDGSASLHTRSLKYGKLRNGVFLAVTGTGGSAASSSSVKGGVGAGNSASGSALA 234
Query: 185 ---------IRRSKSHFCNLACG-----AQVILGCNGYVWVSAIDE--NKSGGFIQNMEV 228
+ RS+ + +ILG NGY+++S E + + +N+ +
Sbjct: 235 APGGSGTGGVVRSRRQVWTVPTANGGGEVNIILGVNGYIFISKNPEGADAASSATENVSI 294
Query: 229 VKLSD------------------RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
++ + R I RL I+ L ++ V + + ++ AY SL+
Sbjct: 295 TRMEEMVSSSIYSSQNDDIPPQTRREIARLTQCIRVLVQNGVRVDEETVMGAYNASLQ 352
>gi|67467767|ref|XP_649967.1| exosome complex exonuclease RRP4 [Entamoeba histolytica HM-1:IMSS]
gi|56466501|gb|EAL44579.1| exosome complex exonuclease RRP4, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449707281|gb|EMD46970.1| exosome complex exonuclease RRP4, putative [Entamoeba histolytica
KU27]
Length = 263
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 14/237 (5%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+TPG+ + Y EG + G+G + E + V G VE++N+LV V + +RY G +G+VVVG
Sbjct: 12 VTPGDEIFYEEGCIPGNGILVEGSEFISCVHGTVERINKLVCVNPIRARYSGNVGDVVVG 71
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + W VD N L ++S+NLP G QRRR+ D ++ F +LI AE+
Sbjct: 72 RIVSVGVGFWKVDINGKNTGLLQISSINLPDGIQRRRTEIDNLNIKTFFDVNELICAEVQ 131
Query: 153 QISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVS 212
++ + + LHTR+ +YGKL +GIL+ V PSLI+R KSH G + I G NGY+++S
Sbjct: 132 SMNGQSCIQLHTRNERYGKLNEGILIQVHPSLIKRCKSHITLFKNGIKFICGMNGYIFIS 191
Query: 213 AIDEN--KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
+E+ + GF E + R+ N + L + + +++ EE++
Sbjct: 192 LNNESDYSNVGF------------ERVARVANCVTILQNKTMHINGPIVEHLSEETV 236
>gi|300706891|ref|XP_002995678.1| hypothetical protein NCER_101358 [Nosema ceranae BRL01]
gi|239604870|gb|EEQ82007.1| hypothetical protein NCER_101358 [Nosema ceranae BRL01]
Length = 218
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 121/184 (65%), Gaps = 2/184 (1%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSV-RAMNSRYIGEIGEVVVGR 93
PGE + + ++ GHGT D+ + + G+ + +N+LV+V M +RY E+G+VV+GR
Sbjct: 6 PGEIICDADEFIKGHGTQIKDDCLASVYFGLPKVINKLVTVVPKMYNRYNAEVGDVVIGR 65
Query: 94 VTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQ 153
VT + ++KW ++ N E++L+L+S+NLPG QRR+ DE MMR+F DLI AE+ +
Sbjct: 66 VTAIYNKKWKIEMNCKSETSLNLSSINLPGVAQRRKLECDEIMMRDFFDIDDLIVAEVQK 125
Query: 154 ISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA 213
++ GS++LHTR+ KY KL +G+L+ + S + K+ F + ++I+GCNGY+W++
Sbjct: 126 VNKSGSVSLHTRNEKYRKLEKGVLVKLTASNVPYVKTRFLRFS-DFEIIIGCNGYIWIAP 184
Query: 214 IDEN 217
+ N
Sbjct: 185 LKNN 188
>gi|342879046|gb|EGU80323.1| hypothetical protein FOXB_09250 [Fusarium oxysporum Fo5176]
Length = 331
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 146/266 (54%), Gaps = 27/266 (10%)
Query: 29 TDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
D ILTPG + +M GHGT+ IK+S+ G + K N+L+SVR + +RY EI
Sbjct: 38 ADDILTPGAEITSNAQWMRGHGTYVPSGSSSIKSSLAGTLTKTNKLLSVRPLRARYTPEI 97
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ +Q+++W VD + + L ++++NLPGG R+R+ DE +R F EGDL
Sbjct: 98 GDLVVGRIVEVQAKRWRVDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDL 157
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLT----VPPSLIRRSKSH-----FCNLAC 197
+ AE+ Q+ +G+ +LHTRSLKYGKL G+ + + RSK N
Sbjct: 158 VVAEVQQLHQDGAASLHTRSLKYGKLRNGVFVAVTGTGGGGGVVRSKRQVWTMDVANAGG 217
Query: 198 GAQVILGCNGYVWVSA---------------IDENKSGG-FIQNMEVVKLSDRETITRLN 241
V+LG NGY+W+S ++EN S + + +++S I R+
Sbjct: 218 KVDVLLGVNGYIWISKHIESDPAAEAAGINRMEENVSSKVYSSQNDPMEVSTMREIARIR 277
Query: 242 NVIKALAESKVMLFDTSIQYAYEESL 267
+VI AL E+ + + + ++ Y E++
Sbjct: 278 SVILALVENGLKVDEDTVTRGYSEAV 303
>gi|261329635|emb|CBH12617.1| exosome complex exonuclease [Trypanosoma brucei gambiense DAL972]
Length = 324
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 146/254 (57%), Gaps = 14/254 (5%)
Query: 41 YLEGYMTGHGTFPDDEE--------IKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+L GY T G P+ I AS+ G+VE +++VSV+ M+SRY+ E+G++VVG
Sbjct: 52 FLRGYNTYEGNNPNGAAAAQEGGGEIIASINGMVEVTDRVVSVKGMSSRYVAEVGDIVVG 111
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
RV + +W V+ + ++ + L +V PGG RRR DE MR EG+L+ AE+
Sbjct: 112 RVKEVCGNRWRVNVGAFQDAVMPLANVTEPGGILRRRGRSDELTMRNIFDEGELVVAEVQ 171
Query: 153 QISTEGSLTLHTRS-LKYGKLGQ-GILLTVPPSLIRRSKSHF-CNLACGAQVILGCNGYV 209
++S +G ++LHTRS KYGK+ G+L+ + P+L++R K HF C ++LG NG +
Sbjct: 172 RVSQDGLISLHTRSGEKYGKVSDFGLLVLISPALVKRVKHHFMCLEFIHVNLVLGTNGAI 231
Query: 210 WVSAIDENKSGGFIQNMEVVKLSD-RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
WVS + ++ +D R +TR+ N I+ + ++ +FD SI+ A + S+
Sbjct: 232 WVSPATATTATESAKSAYDRFDADIRRAVTRVANCIRVMGNARFPVFDKSIEAAVKASVD 291
Query: 269 YS--TYDLLKPESK 280
++ +++L P ++
Sbjct: 292 FALGPFEILYPGNQ 305
>gi|209877206|ref|XP_002140045.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209555651|gb|EEA05696.1| hypothetical protein CMU_027040 [Cryptosporidium muris RN66]
Length = 320
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 144/254 (56%), Gaps = 10/254 (3%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTFPDD-EEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
F + I+ PG+ + Y+ GHGT+ D+ + +S G+ E +N+L+ +A+ RY+GE+
Sbjct: 50 FEERIVIPGDIISTEPNYIRGHGTYEDEFGRLLSSTCGITENLNKLLYTKALGGRYVGEV 109
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G+VVVGRV + +++W+VD S + L L +VNLPG QRRR+ +D M+ L EGD+
Sbjct: 110 GDVVVGRVVEVGNKRWLVDIGSSQYAHLGLAAVNLPGSVQRRRTEEDSLDMKLLLDEGDV 169
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCN 206
I E+ ++ EG LHTRS KYGKL G+L+ +P L++R H L CG Q+ILG N
Sbjct: 170 ICTEVQRVQAEGLCHLHTRSAKYGKLANGLLVKIPGKLVQRQSQHIIVLTCGVQLILGLN 229
Query: 207 GYVWVSAIDE-------NKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSI 259
G++W+S E N S I + ++V+ R I L +IK + L + I
Sbjct: 230 GFIWISLPFEQSHTDTLNYSSSSITS-QIVEPDMRSIIVSLATIIKTFGTLGIQLTPSRI 288
Query: 260 QYAYEESLKYSTYD 273
Y S+K D
Sbjct: 289 DAVY-NSIKSRNLD 301
>gi|425778640|gb|EKV16758.1| Exosome complex exonuclease Rrp4, putative [Penicillium digitatum
PHI26]
gi|425784154|gb|EKV21947.1| Exosome complex exonuclease Rrp4, putative [Penicillium digitatum
Pd1]
Length = 392
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 61/298 (20%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE V +M GHGT+ P I A+V G V+K N+L+SV + +RY EIG++
Sbjct: 56 IVTPGEVVTDDPQWMRGHGTYMNPLSTSIIATVAGTVQKTNKLLSVHPLRARYTPEIGDL 115
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +QS++W VD + L + L L+++NLPGG RRR+ DE +R F EGDL+ A
Sbjct: 116 VVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVA 175
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSL------------------------- 184
E+ + +GS +LHTRSLKYGKL G+ L V +
Sbjct: 176 EVQSVHQDGSASLHTRSLKYGKLRNGVFLAVTGTGGSAASSSSVKGGVGAGNSTAGSALA 235
Query: 185 ---------IRRSKSHFCNLACG-----AQVILGCNGYVWVSAIDE--NKSGGFIQNMEV 228
+ RS+ + +ILG NGY+++S + + + +N+ +
Sbjct: 236 APGGSGTGGVVRSRRQVWTVTAANGGGEVNIILGVNGYIFISKHTDGADAASATTENISI 295
Query: 229 VKLSD------------------RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
++ + R I RL I+ L ++ V + + ++ AY SL+
Sbjct: 296 TRMEEMVSSSIYSSQNDDIPPQTRREIARLAQCIRVLVQNGVRVDEETVMGAYNASLQ 353
>gi|401827833|ref|XP_003888209.1| Rrp4-like RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999409|gb|AFM99228.1| Rrp4-like RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 225
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 121/190 (63%), Gaps = 4/190 (2%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVV 90
+L PGE V GY+ GHGT D+ I ++ G V N+LV++ ++ +Y E+G VV
Sbjct: 4 LLLPGEDVLESNGYIRGHGTQLKDDHIVSTYFGRVRITNKLVAIDPVSPMKYSPEVGNVV 63
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
+GRV G+ ++KW ++ NS + L L+++NLPG QRR+ DE MR+F DL+ +E
Sbjct: 64 IGRVVGIHNKKWKMELNSKADVYLGLSAINLPGVAQRRKQESDEMSMRDFFDINDLVVSE 123
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA-QVILGCNGYV 209
+ +++ G+ LHTR+ +YGKLG+G+L+ VP L+ K+ F L+ G+ + I+GCNGY+
Sbjct: 124 VQKVNRNGTAALHTRNDRYGKLGEGLLVFVPHFLLEPLKTRF--LSNGSIRAIVGCNGYI 181
Query: 210 WVSAIDENKS 219
W+ E+ S
Sbjct: 182 WIGRKHEDPS 191
>gi|396493578|ref|XP_003844087.1| hypothetical protein LEMA_P017380.1 [Leptosphaeria maculans JN3]
gi|312220667|emb|CBY00608.1| hypothetical protein LEMA_P017380.1 [Leptosphaeria maculans JN3]
Length = 341
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 119/198 (60%), Gaps = 14/198 (7%)
Query: 29 TDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
T I+TPGE + +M GHGT+ PD I ++V G + K N+L+SV+ + +RY EI
Sbjct: 38 TKSIVTPGEHITSDPQWMRGHGTYVPPDSSTIISTVAGHLHKTNKLLSVQPLRARYQPEI 97
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++V+GR+ +Q++KW VD + + + L L+S+NLPGG RRR+ DE +R F EGDL
Sbjct: 98 GDLVIGRIVSVQTKKWSVDIAAPMLANLPLSSINLPGGILRRRTAVDELNIRTFFSEGDL 157
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKL-----------GQGILLTVPPSLIRRSKSHFCNL 195
+ AE+ + + + +LHTRSLKYGKL G GIL + R + N
Sbjct: 158 LVAEVQSLHQDNTASLHTRSLKYGKLRNGLFTSLTGAGGGILSRRGGVVRSRRQVFTLNT 217
Query: 196 ACGA-QVILGCNGYVWVS 212
A G VILG NGY+++S
Sbjct: 218 AAGEIDVILGVNGYIFIS 235
>gi|303391168|ref|XP_003073814.1| Rrp4-like RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
gi|303302962|gb|ADM12454.1| Rrp4-like RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
Length = 223
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 118/187 (63%), Gaps = 2/187 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVV 90
+ PGE V +GY+ GHGT I ++ G V+ N+LVS+ ++S +Y E+G VV
Sbjct: 4 LFLPGEDVLESDGYIRGHGTQLRGSNIASTYFGRVKITNKLVSIDPISSMKYNPEVGNVV 63
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGRV G+ ++KW V+ +S ++ L L+++NLPG QRR+ DE MR+F DL+ +E
Sbjct: 64 VGRVIGIHNKKWKVELSSRGDAYLGLSAINLPGTVQRRKQESDEMSMRDFFDINDLVVSE 123
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ +++ G++ LHTR+ YGKLGQG+L+ P L+ ++ F L +VI+GCNGY+W
Sbjct: 124 VQKVNRNGTIALHTRNDMYGKLGQGLLVFAPHFLLEPLRTRFL-LHGNIKVIVGCNGYIW 182
Query: 211 VSAIDEN 217
V E+
Sbjct: 183 VGKTRED 189
>gi|340522359|gb|EGR52592.1| predicted protein [Trichoderma reesei QM6a]
Length = 332
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 144/265 (54%), Gaps = 27/265 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
ILTPG + +M GHGT+ P+ I +S+ G + + N+L+SVR + +RY EIG++
Sbjct: 42 ILTPGTVITSNPQWMRGHGTYVPPNTTNITSSLAGTLTRTNKLLSVRPLRARYNPEIGDL 101
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q+++W VD + + L ++++NLPGG R+R+ DE +R F EGDL+ A
Sbjct: 102 VVGRIVEVQAKRWRVDVAAAQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLLVA 161
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQ----GILLTVPPSLIRRSKSHFCNL--ACGA---Q 200
E+ Q+ +G+ +LHTRSLKYGKL + T + + RSK + A G
Sbjct: 162 EVQQLHQDGAASLHTRSLKYGKLRNGVFVAVGGTGGGAGVVRSKRQLWTMETANGGGKID 221
Query: 201 VILGCNGYVWVSA---IDENKSGGFIQNMEV-------------VKLSDRETITRLNNVI 244
V+LG NGY+W+S D I ME + + I R +VI
Sbjct: 222 VLLGVNGYIWISKHVESDVAAEAAGINRMEESVSSQIYSSQNNHIDVPTMREIARCRSVI 281
Query: 245 KALAESKVMLFDTSIQYAYEESLKY 269
AL E+ V + + ++ Y E++++
Sbjct: 282 LALVENGVKVDEDTVTRGYLEAVEF 306
>gi|346974759|gb|EGY18211.1| exosome complex exonuclease RRP4 [Verticillium dahliae VdLs.17]
Length = 354
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 140/267 (52%), Gaps = 34/267 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE + +M GHGT+ D I +SV G + + N+L+SVR + +RY EIG++
Sbjct: 55 IVTPGEVITDDPQWMRGHGTYVSAADGSIVSSVAGTITRTNKLLSVRPLRARYTPEIGDL 114
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q ++W VD + + L ++++NLPGG R+R+ DE +R F EGDL+ A
Sbjct: 115 VVGRIVEVQPKRWRVDVGASQLATLQISAINLPGGILRKRTDTDELQIRSFFAEGDLLVA 174
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILL--------TVPPSLIRRSKSHFCNLACGA-- 199
E+ + EG +LHTRSL+YGKL G+ +R A GA
Sbjct: 175 EVQTLHAEGGASLHTRSLRYGKLRNGLFCAVSGTGGGGAGVVRAKRQSFAVDASARGADQ 234
Query: 200 -QVILGCNGYVWVSAIDENKSGGFIQNMEVVKLS------------------DRET---I 237
+V LG NGY+W+S + + EVV L+ D ET I
Sbjct: 235 IEVTLGVNGYIWISKLVKADGESAAAAGEVVGLNRMEDTVSANVYSSQNDRIDTETMREI 294
Query: 238 TRLNNVIKALAESKVMLFDTSIQYAYE 264
+R+ +VI AL E+ + + + ++ Y+
Sbjct: 295 SRIRSVIMALVENGLRVDEDTVSTGYQ 321
>gi|157866419|ref|XP_001687601.1| putative exosome complex exonuclease [Leishmania major strain
Friedlin]
gi|68125215|emb|CAJ02553.1| putative exosome complex exonuclease [Leishmania major strain
Friedlin]
Length = 307
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 149/258 (57%), Gaps = 18/258 (6%)
Query: 41 YLEGYMTGHGTFPDDE--------EIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
YL G+ T G P D E+ A++ G +E +++SV+ + RY EIG+VVVG
Sbjct: 29 YLRGFNTFAGNNPSDRALLHEGAGEVVAAISGHIEVTERVISVKGLLPRYQPEIGDVVVG 88
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + KW VD NS + + L+SV PGG RRR DE MR+ + DL++AE+
Sbjct: 89 RIVEVSGNKWHVDVNSTQTAIMLLSSVTEPGGILRRRGRGDELGMRQIFDQDDLVAAEVQ 148
Query: 153 QISTEGSLTLHTRSL-KYGKL-GQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYV 209
+IS +G ++LHTR+ KYG+L G GIL++V PSL++R+K F LA Q+I+G NG +
Sbjct: 149 RISPDGVMSLHTRAADKYGRLSGLGILVSVRPSLVKRAKHQFVELADYSTQLIIGMNGNI 208
Query: 210 WVSAIDENKSGGFIQNMEVVKLSD-RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
W+ ++ + S E +D R+ + R+ N IKAL ++V + SI+ + SL
Sbjct: 209 WICSVQPSTS----DAEETEHATDARQNVARVANCIKALGAAQVQIHPASIEASVAASLD 264
Query: 269 --YSTYDLLKPESKLDLV 284
S +D+ P+++ LV
Sbjct: 265 AGLSVFDVSLPKNRDALV 282
>gi|327357351|gb|EGE86208.1| exosome complex exonuclease Rrp4 [Ajellomyces dermatitidis ATCC
18188]
Length = 373
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 146/290 (50%), Gaps = 54/290 (18%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIK---------------ASVGGVVEKVNQLVS 74
I+TPGE V +M GHGTF P A+V G V+K N+L+S
Sbjct: 49 IVTPGEVVTDDPQWMRGHGTFTRPAHNPFHITTPSTSTSTSNTIIATVAGTVQKTNKLLS 108
Query: 75 VRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE 134
V+ + +RY EIG++V+GR+ +QS++W VD + L + L L+++NLPGG R+R+ DE
Sbjct: 109 VQPLRARYTPEIGDLVIGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRKRTTADE 168
Query: 135 EMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV------------PP 182
+R F EGDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 LQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLAVGGMSAAGGVVRGSG 228
Query: 183 SLIRRSKSHFCNLACGA---QVILGCNGYVWVSA-------------------IDENKSG 220
+ R + + GA V+LG NGY+W+S ++E S
Sbjct: 229 VVRSRRQVWTFPASHGAGEIDVVLGVNGYIWISKHVGDGAVGGAAGGDVSITRLEEMVSS 288
Query: 221 GFI--QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
QN E + L+ R I RL I+ L E V + + ++ AY SL+
Sbjct: 289 AIYSSQNDE-IGLATRREIARLCGCIRVLVEGGVKVDEDTVMKAYRASLE 337
>gi|261188483|ref|XP_002620656.1| exosome complex exonuclease Rrp4 [Ajellomyces dermatitidis
SLH14081]
gi|239593140|gb|EEQ75721.1| exosome complex exonuclease Rrp4 [Ajellomyces dermatitidis
SLH14081]
Length = 373
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 146/290 (50%), Gaps = 54/290 (18%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIK---------------ASVGGVVEKVNQLVS 74
I+TPGE V +M GHGTF P A+V G V+K N+L+S
Sbjct: 49 IVTPGEVVTDDPQWMRGHGTFTRPAHNPFHITTPSTSSSTSNTIIATVAGTVQKTNKLLS 108
Query: 75 VRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE 134
V+ + +RY EIG++V+GR+ +QS++W VD + L + L L+++NLPGG R+R+ DE
Sbjct: 109 VQPLRARYTPEIGDLVIGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRKRTTADE 168
Query: 135 EMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV------------PP 182
+R F EGDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 LQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLAVGGMSAAGGVVRGSG 228
Query: 183 SLIRRSKSHFCNLACGA---QVILGCNGYVWVSA-------------------IDENKSG 220
+ R + + GA V+LG NGY+W+S ++E S
Sbjct: 229 VVRSRRQVWTFPASHGAGEIDVVLGVNGYIWISKHVGDGAVGGAAGGDVSITRLEEMVSS 288
Query: 221 GFI--QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
QN E + L+ R I RL I+ L E V + + ++ AY SL+
Sbjct: 289 AIYSSQNDE-IGLATRREIARLCGCIRVLVEGGVKVDEDTVMKAYRASLE 337
>gi|302421502|ref|XP_003008581.1| exosome complex exonuclease RRP4 [Verticillium albo-atrum VaMs.102]
gi|261351727|gb|EEY14155.1| exosome complex exonuclease RRP4 [Verticillium albo-atrum VaMs.102]
Length = 353
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 140/267 (52%), Gaps = 34/267 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
I+TPGE + +M GHGT+ D I +SV G + + N+L+SVR + +RY EIG++
Sbjct: 54 IVTPGEVITDDPQWMRGHGTYVSAADGSIVSSVAGTITRTNKLLSVRPLRARYTPEIGDL 113
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGR+ +Q ++W VD + + L ++++NLPGG R+R+ DE +R F EGDL+ A
Sbjct: 114 VVGRIVEVQPKRWRVDVGASQLATLQISAINLPGGILRKRTDTDELQIRSFFAEGDLLVA 173
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILL--------TVPPSLIRRSKSHFCNLACGA-- 199
E+ + EG +LHTRSL+YGKL G+ +R A GA
Sbjct: 174 EVQTLHAEGGASLHTRSLRYGKLRNGLFCAVSGTGGGGAGVVRAKRQSFAVDASARGADQ 233
Query: 200 -QVILGCNGYVWVSAIDENKSGGFIQNMEVVKLS------------------DRET---I 237
+V LG NGY+W+S + + EVV L+ D ET I
Sbjct: 234 IEVTLGVNGYIWISKLVKADGESAAGAGEVVGLNRMEDTVSANVYSSQNDRIDTETMREI 293
Query: 238 TRLNNVIKALAESKVMLFDTSIQYAYE 264
+R+ +VI AL E+ + + + ++ Y+
Sbjct: 294 SRIRSVIMALVENGLRVDEETVSTGYQ 320
>gi|169622808|ref|XP_001804812.1| hypothetical protein SNOG_14630 [Phaeosphaeria nodorum SN15]
gi|111056702|gb|EAT77822.1| hypothetical protein SNOG_14630 [Phaeosphaeria nodorum SN15]
Length = 337
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 149/268 (55%), Gaps = 29/268 (10%)
Query: 29 TDPILTPGETVEYLEGYMTGHGTF-PDDEE-IKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
T+ I+TPGE + +M GHGT+ P E I ++V G + K N+L+SV+ + +RY EI
Sbjct: 37 TNAIVTPGEHITSDPQWMRGHGTYIPAGETTIISTVAGHMHKTNKLLSVQPLRARYQPEI 96
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ +Q++KW VD + + + L L+S+NLPGG RRR+ DE +R F EGDL
Sbjct: 97 GDLVVGRIVSVQTKKWSVDIAAPMLAGLPLSSINLPGGILRRRTAVDELNIRTFFSEGDL 156
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKL-----------GQGILLTVPPSLIRRSKSHFCNL 195
+ AE+ + + + +LHTRSLKYGKL G GIL + R + N
Sbjct: 157 LVAEVQSLHQDNTASLHTRSLKYGKLRNGLFTSLSGAGGGILSRRGGVVRSRRQVFTLNT 216
Query: 196 ACGA-QVILGCNGYVWVSA------------IDENKSGGFI--QNMEVVKLSDRETITRL 240
A G V+LG NGY+++S +DE S QN ++ RE ITR+
Sbjct: 217 AAGEIDVVLGVNGYIFISKHIKPAEDVSINRLDEGVSETLYSSQNDDIEPAVMRE-ITRV 275
Query: 241 NNVIKALAESKVMLFDTSIQYAYEESLK 268
+++IK L + + + I YE +++
Sbjct: 276 SSLIKGLVACGMRVDEDMIVKVYEGAVE 303
>gi|396082328|gb|AFN83938.1| Rrp4-like RNA-binding protein [Encephalitozoon romaleae SJ-2008]
Length = 225
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 129/220 (58%), Gaps = 4/220 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVV 90
+ PGE V +GY+ GHGT D I ++ G V N+LV++ + +Y E+G VV
Sbjct: 4 LFLPGEEVLESDGYIRGHGTQLKDSHIVSTYFGKVRITNKLVAIDPVFPMKYTPEVGNVV 63
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
+GRV G+ ++KW +D NS + L L+++NLPG QRR+ DE MR F DL+ +E
Sbjct: 64 IGRVVGIHNKKWKIDLNSRSDVYLGLSAINLPGAVQRRKQESDEMSMRSFFDINDLVVSE 123
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
I +++ G+ LHTR+ +YGKL +G+L+ VP L+ K+ F +VI GCNGY+W
Sbjct: 124 IQKVNRNGTAALHTRNDRYGKLSKGLLVFVPHFLLEPLKTRFL-FNDSIKVIAGCNGYIW 182
Query: 211 VSAIDENKSGGFIQNMEVV-KLSDRETITRLNNVIKALAE 249
+ E+ + F++ +VV K+ + + R N+ K L +
Sbjct: 183 IGRRHEDPA-EFVEVAKVVSKVKEMASQNRSINMEKILGK 221
>gi|407833348|gb|EKF98727.1| exosome complex exonuclease, putative,ribosomal RNA processing
protein 4, putative [Trypanosoma cruzi]
Length = 302
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 156/271 (57%), Gaps = 18/271 (6%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDD--------EEIKASVGGVVEKVNQLVSVRAMNSR 81
D L E V +L GY T G P++ EI A++ G++E +++VSV+ +++R
Sbjct: 18 DSKLLEPEGVVFLRGYSTYEGNRPNEVAAAQEGGGEIIAAINGLIEVTDRVVSVKGISTR 77
Query: 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFL 141
Y EIG++V+GRV + +W +D ++ ++ + L++ PGG RRR DE MR
Sbjct: 78 YHPEIGDIVLGRVKEVSGNRWRIDISAYQDAVMLLSNATEPGGILRRRGRNDELTMRHIF 137
Query: 142 KEGDLISAEIHQISTEGSLTLHTR-SLKYGKL-GQGILLTVPPSLIRRSKSHFCNLAC-G 198
+ +++ AE+ +IS++G ++LHTR KYGKL G G+L+ V P+L+RR+K HF L
Sbjct: 138 DQDEIVVAEVQRISSDGVVSLHTRCGEKYGKLTGFGMLVLVSPALVRRAKHHFLKLGILP 197
Query: 199 AQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSD---RETITRLNNVIKALAESKVMLF 255
+ILG NG VWV+ D + GG ++ + +D R ++ R+ N IK + +++ +F
Sbjct: 198 VGIILGTNGMVWVNP-DVAQRGGTDNSLYFNEQTDIDVRRSVARVANCIKVMNFARLPIF 256
Query: 256 DTSIQYAYEESLKYST--YDLLKPESKLDLV 284
+I+ + + S+ +D+L S DL+
Sbjct: 257 AKTIEASVKLSIDVGIGPFDVLH-NSNYDLI 286
>gi|71406615|ref|XP_805831.1| exosome complex exonuclease [Trypanosoma cruzi strain CL Brener]
gi|70869391|gb|EAN83980.1| exosome complex exonuclease, putative [Trypanosoma cruzi]
Length = 302
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 152/270 (56%), Gaps = 25/270 (9%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDD--------EEIKASVGGVVEKVNQLVSVRAMNSR 81
D L E V +L GY T G P++ EI A++ G++E +++VSV+ +++R
Sbjct: 18 DSKLLEPEGVVFLRGYSTYEGNRPNEVAAAQEGGGEIIAAINGLIEVTDRVVSVKGISTR 77
Query: 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFL 141
Y EIG++V+GRV + +W +D ++ ++ + L++ PGG RRR DE MR
Sbjct: 78 YHPEIGDIVIGRVKEVSGNRWRIDISAYQDAVMLLSNATEPGGILRRRGRNDELTMRHIF 137
Query: 142 KEGDLISAEIHQISTEGSLTLHTR-SLKYGKL-GQGILLTVPPSLIRRSKSHFCNLAC-G 198
+ +++ AE+ +IS++G ++LHTR KYGKL G G+L+ V P+L+RR+K HF L
Sbjct: 138 DQDEIVVAEVQRISSDGVVSLHTRCGEKYGKLTGFGMLVLVSPALVRRAKHHFLKLGILP 197
Query: 199 AQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSD---RETITRLNNVIKALAESKVMLF 255
+ILG NG VWV+ D + GG + + +D R ++ R+ N IK + +++ +F
Sbjct: 198 VGIILGTNGMVWVNP-DVAQRGGTDNSFYFNEQTDVDVRRSVARVANCIKVMNFARLPIF 256
Query: 256 DTSIQYAYEES----------LKYSTYDLL 275
+I+ + + S L S YDL+
Sbjct: 257 AKTIEASVKLSIDVGLGPFDVLHTSNYDLI 286
>gi|407399623|gb|EKF28367.1| exosome complex exonuclease, putative,ribosomal RNA processing
protein 4, putative [Trypanosoma cruzi marinkellei]
Length = 302
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 153/271 (56%), Gaps = 18/271 (6%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDD--------EEIKASVGGVVEKVNQLVSVRAMNSR 81
D L E V +L GY T G P++ EI A++ G++E +++VSV+ +++R
Sbjct: 18 DSKLLEPEGVVFLRGYSTYEGNRPNEVAAAQEGGGEIIAAINGLIEVTDRVVSVKGISTR 77
Query: 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFL 141
Y EIG++V+GRV + +W +D ++ ++ + L++ PGG RRR DE MR
Sbjct: 78 YHPEIGDIVIGRVKEVSGNRWRIDISAYQDAVMLLSNATEPGGILRRRGRNDELTMRNIF 137
Query: 142 KEGDLISAEIHQISTEGSLTLHTR-SLKYGKL-GQGILLTVPPSLIRRSKSHFCNLAC-G 198
+ +L+ AE+ +IS++G ++LHTR KYGKL G G+L+ V P+L+RR+K HF L
Sbjct: 138 DQDELVVAEVQRISSDGVVSLHTRCGDKYGKLTGFGMLVLVSPALVRRAKHHFLKLGILP 197
Query: 199 AQVILGCNGYVWVS---AIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLF 255
+ILG NG VWV+ E + F N E + R ++ R+ N IK + +++ +F
Sbjct: 198 VGIILGTNGMVWVNPDVGQREGTNNSFYFN-EQTDVDVRRSVARVANCIKVMNSARLPIF 256
Query: 256 DTSIQYAYEESLK--YSTYDLLKPESKLDLV 284
+++ + + S+ +D+L S DL+
Sbjct: 257 AKTVEASVKLSIDVGLGPFDVLH-NSNYDLI 286
>gi|189188216|ref|XP_001930447.1| exosome component 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972053|gb|EDU39552.1| exosome component 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 348
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 122/198 (61%), Gaps = 17/198 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTF-----PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE + +M GHGT+ P I ++V G ++K N+L+SV+ + +RY EI
Sbjct: 42 IVTPGEHITSDPQWMRGHGTYIPSIPPSSTTIISTVAGTLQKTNKLLSVQPLRARYQPEI 101
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ + ++KW VD + + + L L+S+NLPGG RRR+ DE +R F +EGDL
Sbjct: 102 GDLVVGRIVTVGTKKWNVDIAAPMLANLPLSSINLPGGVLRRRTTVDELNIRTFFQEGDL 161
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGI----------LLTVPPSLIRRSKSHFC-NL 195
+ AE+ + +G+ +LHTRSLKYGKL G+ +L+ ++R + F N
Sbjct: 162 LVAEVQSLHQDGTASLHTRSLKYGKLRNGLFTSLTGAGGGILSRKGGVVRSRRQVFTLNT 221
Query: 196 ACGA-QVILGCNGYVWVS 212
A G ++LG NGY+++S
Sbjct: 222 AAGEIDIVLGVNGYIFIS 239
>gi|330912604|ref|XP_003296005.1| hypothetical protein PTT_04382 [Pyrenophora teres f. teres 0-1]
gi|311332190|gb|EFQ95897.1| hypothetical protein PTT_04382 [Pyrenophora teres f. teres 0-1]
Length = 348
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 122/198 (61%), Gaps = 17/198 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTF-----PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE + +M GHGT+ P I ++V G ++K N+L+SV+ + +RY EI
Sbjct: 42 IVTPGEHITSDPQWMRGHGTYIPSIPPSSTTIISTVAGTLQKTNKLLSVQPLRARYQPEI 101
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ + ++KW VD + + + L L+S+NLPGG RRR+ DE +R F +EGDL
Sbjct: 102 GDLVVGRIMTVGTKKWNVDIAAPMLANLPLSSINLPGGVLRRRTTVDELNIRTFFQEGDL 161
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGI----------LLTVPPSLIRRSKSHFC-NL 195
+ AE+ + +G+ +LHTRSLKYGKL G+ +L+ ++R + F N
Sbjct: 162 LVAEVQSLHQDGTASLHTRSLKYGKLRNGLFTSLTGAGGGILSRKGGVVRSRRQVFTLNT 221
Query: 196 ACGA-QVILGCNGYVWVS 212
A G ++LG NGY+++S
Sbjct: 222 AAGEIDIVLGVNGYIFIS 239
>gi|145504016|ref|XP_001437980.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405141|emb|CAK70583.1| unnamed protein product [Paramecium tetraurelia]
Length = 274
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 8/239 (3%)
Query: 25 IHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
+H + PG+ + G+++G T+ + +I +S G + + N+L+ ++ + Y
Sbjct: 7 LHHDKKEVFLPGDLLSDETGFISGTNTYEEQGKIFSSTTGTINQTNKLIMIKPIKCSYQP 66
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
+IGE+V+G++ ++ +KW+V+ S E+ LHL S LP EQR+++ DE MR+ E
Sbjct: 67 QIGEIVIGQIVQIRDKKWIVNIGSSSEATLHLNSTYLP--EQRQKTEDDEMNMRQIFAEN 124
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILG 204
DLI AE+H ++ + S+ LHTR LKYGK+ G+L+ V LI + K HF L +ILG
Sbjct: 125 DLICAEVHSVNNDKSVNLHTRGLKYGKIEDGLLIKVNHYLIVKQKRHFIKLNNNVNMILG 184
Query: 205 CNGYVWVSAID---ENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQ 260
NG +++S D N+ + QN V R I IK L +++ + SI+
Sbjct: 185 HNGQIFLSNQDRTTNNQKVIYCQNYTV---QQRVDIANTGKAIKFLQQNQYKISQISIE 240
>gi|71422268|ref|XP_812081.1| exosome complex exonuclease [Trypanosoma cruzi strain CL Brener]
gi|70876819|gb|EAN90230.1| exosome complex exonuclease, putative [Trypanosoma cruzi]
Length = 329
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 156/271 (57%), Gaps = 18/271 (6%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDD--------EEIKASVGGVVEKVNQLVSVRAMNSR 81
D L E V +L GY T G P++ EI A++ G++E +++VSV+ +++R
Sbjct: 45 DSKLLEPEGVVFLRGYSTYEGNRPNEVAAAQEGGGEIIAAINGLIEVTDRVVSVKGISTR 104
Query: 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFL 141
Y EIG++V+GRV + +W +D ++ ++ + L++ PGG RRR DE MR
Sbjct: 105 YHPEIGDIVIGRVKEVSGNRWRIDISAYQDAVMLLSNATEPGGILRRRGRNDELTMRHIF 164
Query: 142 KEGDLISAEIHQISTEGSLTLHTR-SLKYGKL-GQGILLTVPPSLIRRSKSHFCNLAC-G 198
+ +++ AE+ +IS++G ++LHTR KYGKL G G+L+ V P+L+RR+K HF L
Sbjct: 165 DQDEIVVAEVQRISSDGVVSLHTRCGEKYGKLTGFGMLVLVSPALVRRAKHHFLKLVILP 224
Query: 199 AQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSD---RETITRLNNVIKALAESKVMLF 255
+ILG NG VWV+ + + GG ++ + +D R ++ R+ N IK + +++ +F
Sbjct: 225 VGIILGTNGMVWVNP-NVAQRGGTDNSLYFNEQTDVDVRRSVARVANCIKVMNFARLPIF 283
Query: 256 DTSIQYAYEESLKYST--YDLLKPESKLDLV 284
+I+ + + S+ +D+L S DL+
Sbjct: 284 AKTIEASVKLSIDVGIGPFDVLH-NSNYDLI 313
>gi|302914604|ref|XP_003051170.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732108|gb|EEU45457.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 329
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 149/283 (52%), Gaps = 32/283 (11%)
Query: 30 DPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIG 87
D ILTPG + +M GHGT+ I +S+ G + K N+L+SVR + +RY EIG
Sbjct: 37 DGILTPGSVITSNPQWMRGHGTYIPSGSSSIASSLAGTLTKTNKLLSVRPLRARYTPEIG 96
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
++VVGR+ +Q+++W VD + + L ++++NLPGG R+R+ DE +R F EGDL+
Sbjct: 97 DLVVGRIVEVQAKRWRVDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLV 156
Query: 148 SAEIHQISTEGSLTLHTRSLKYGKLGQGILLT----VPPSLIRRSKSH-----FCNLACG 198
AE+ Q+ +G+ +LHTRSLKYGKL G+ ++ + R+K N
Sbjct: 157 VAEVQQLHQDGAASLHTRSLKYGKLRNGVFVSVTGTGGGGGVVRAKRQVWTMDVANAGGK 216
Query: 199 AQVILGCNGYVWVSA---IDENKSGGFIQNMEV-------------VKLSDRETITRLNN 242
V+LG NGY+W+S D I ME +++S I R+ +
Sbjct: 217 VDVLLGVNGYIWISKHIESDTAAEAAGINRMEESVSNKVYSSQNDHMEVSTMREIARIRS 276
Query: 243 VIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVL 285
VI AL E+ + + + + Y E++ DL + + DL L
Sbjct: 277 VILALVENVLKVDEDMVTRGYNEAV-----DLARESTDDDLYL 314
>gi|346318422|gb|EGX88025.1| exosome component 2 [Cordyceps militaris CM01]
Length = 353
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 149/286 (52%), Gaps = 30/286 (10%)
Query: 13 MLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVN 70
M A+ R + + D ILTPG + +M GHGT+ I +S+ G + K N
Sbjct: 41 MRAAKRQRTMADDDAEADEILTPGTLITSNPQWMRGHGTYVPQGSTSITSSLAGTLTKTN 100
Query: 71 QLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRS 130
+L+SVR + +RY EIG++VVGR+ +Q+++W VD + + L ++++NLPGG R+R+
Sbjct: 101 KLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWRVDVAAAQLAILQISAINLPGGILRKRT 160
Query: 131 VQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKL----GQGILLTVPPSLIR 186
DE +R F EGDL+ AE+ Q+ +G+ +LHTRSLKYGKL + T +
Sbjct: 161 ETDELQIRTFFAEGDLVVAEVQQLHQDGAASLHTRSLKYGKLRNGVFVRVGGTGGGGGVV 220
Query: 187 RSKSHFCNLACGA--------QVILGCNGYVWVS---AIDENKSGGFIQNMEV------- 228
R+K + A V+LG NGY+W+S A + + ME
Sbjct: 221 RAKRQVWTMEPAATAAAAHKMDVLLGVNGYIWISRHVASEAPAEAAGVNRMEEAVSSRVY 280
Query: 229 ------VKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
V ++ I R+ +V+ AL E+ + + + ++ Y E+++
Sbjct: 281 ASQNDDVDVATMREIARVRSVVLALVEAGLRVDEDTVTRGYHEAVE 326
>gi|19074743|ref|NP_586249.1| similarity to HYPOTHETICAL PROTEIN YAZE_SCHPO [Encephalitozoon
cuniculi GB-M1]
gi|19069385|emb|CAD25853.1| similarity to HYPOTHETICAL PROTEIN YAZE_SCHPO [Encephalitozoon
cuniculi GB-M1]
gi|449329904|gb|AGE96172.1| hypothetical protein ECU10_1340 [Encephalitozoon cuniculi]
Length = 223
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 115/182 (63%), Gaps = 4/182 (2%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVV 90
+L PGE V EGY+ GHGT I ++ G N+LV+V M +Y E+G+VV
Sbjct: 4 LLLPGEDVLESEGYIRGHGTQLRGSCIASTYFGRPRITNKLVTVDPMFPLKYSPEVGDVV 63
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGRV G+ ++KW ++ NS + L L+++NLPG QRR+ DE MR+F + DL+ +E
Sbjct: 64 VGRVIGIHNKKWKMELNSKADVYLGLSAINLPGTVQRRKQESDEISMRDFFEIDDLVVSE 123
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA-QVILGCNGYV 209
+ ++ G LHTRS KYGKLG G+L+ VP L+ K+ F L+ G+ +VI+GCNGY+
Sbjct: 124 VQKVGRNGVAALHTRSDKYGKLGPGLLVFVPHFLLEPLKTRF--LSNGSVEVIVGCNGYI 181
Query: 210 WV 211
WV
Sbjct: 182 WV 183
>gi|308804591|ref|XP_003079608.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4 (ISS)
[Ostreococcus tauri]
gi|116058063|emb|CAL54266.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4 (ISS)
[Ostreococcus tauri]
Length = 261
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 121/208 (58%), Gaps = 37/208 (17%)
Query: 74 SVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQD 133
SVRA+ SRY+ E G+VV+G+VT + ++W++D N+ L L++V+LPG QRRR+ D
Sbjct: 7 SVRALKSRYVPETGDVVLGKVTNVSGKRWILDINARQNGVLQLSAVHLPGNVQRRRNDVD 66
Query: 134 EEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC 193
E MR EGD++S+E+ + ++G+ LHTRSLKYG+L +G L+ V +L+RR HF
Sbjct: 67 ELNMRTLYAEGDIVSSEVQSVYSDGAAALHTRSLKYGRLKRGQLVRVTANLVRRLPQHFH 126
Query: 194 NL---------ACGA---QVILGCNGYVWV-------------------SAIDE-NKSGG 221
L A G +++LGCNGY+WV AID+ N++ G
Sbjct: 127 RLEMDEFHDSVATGTHDVEILLGCNGYIWVGAPSAATAPRETELRREPNDAIDDLNEAYG 186
Query: 222 FIQNMEVVKLSDRETITRLNNVIKALAE 249
+ V L RE I+R+ ++ALAE
Sbjct: 187 -----DKVPLPQRENISRVALAVRALAE 209
>gi|255071045|ref|XP_002507604.1| hypothetical protein MICPUN_112705 [Micromonas sp. RCC299]
gi|226522879|gb|ACO68862.1| hypothetical protein MICPUN_112705 [Micromonas sp. RCC299]
Length = 290
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 150/274 (54%), Gaps = 30/274 (10%)
Query: 32 ILTPGET---VEYLEGYMTGHG---TFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
++PGE+ +G + GHG + DD + ++V G + VN+L+S R + S+Y+ E
Sbjct: 8 FVSPGESNLAAHLGKGSLFGHGFQVSLSDD--VTSNVCGPLALVNKLISARPLRSQYLPE 65
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
IG+VV+GRV+ + +++W VD N ++ LHL++V+LP G QRRR+ DE MR + D
Sbjct: 66 IGDVVLGRVSEVLAKRWKVDINIPHDAVLHLSAVHLPDGIQRRRNYDDELDMRARYGDRD 125
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC-----NLAC-GA 199
LISAE+ ++GS+ LHTR Y + G + V P+L++R K HFC N C
Sbjct: 126 LISAEVQGCFSDGSVALHTRISAYSRKFNGQHIQVLPTLVKRGKRHFCDFQGENYGCTDI 185
Query: 200 QVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSD------------RETITRLNNVIKAL 247
+VI GCNG +WV + G + + ++ + RE I R+ N ++ L
Sbjct: 186 EVIYGCNGLIWVGQSSKEAPGRSSFDADTARVDEAHDRFSYVQRAVRELICRVANSVRVL 245
Query: 248 AESKVMLFDTSIQYAYEESLKYSTYDLLKPESKL 281
A +++ +I + ++ST+ L+P+ +
Sbjct: 246 AALGMVVDPHNII----DVCQHSTFLGLQPKDMM 275
>gi|146081162|ref|XP_001464184.1| putative exosome complex exonuclease [Leishmania infantum JPCM5]
gi|398012359|ref|XP_003859373.1| exosome complex exonuclease, putative [Leishmania donovani]
gi|134068275|emb|CAM66561.1| putative exosome complex exonuclease [Leishmania infantum JPCM5]
gi|322497588|emb|CBZ32661.1| exosome complex exonuclease, putative [Leishmania donovani]
Length = 307
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 143/248 (57%), Gaps = 18/248 (7%)
Query: 41 YLEGYMTGHGTFPDD--------EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
YL G+ T G P D EI A++ G +E +++SV+ + RY EIG+VVVG
Sbjct: 29 YLRGFNTFAGNNPSDVALLHEGAGEIVAAISGHIEVTERVISVKGLVPRYQPEIGDVVVG 88
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + KW VD NS + + L+SV PGG RRR DE MR+ + DL++AE+
Sbjct: 89 RILEVSGNKWQVDVNSTQTAIMLLSSVTEPGGILRRRGRGDELGMRQIFDQDDLVAAEVQ 148
Query: 153 QISTEGSLTLHTRSL-KYGKL-GQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYV 209
+IS +G ++LHTR+ KYG L G GIL+TV PSL++R+K F LA Q+I+G NG +
Sbjct: 149 RISPDGVMSLHTRAAEKYGLLSGPGILVTVRPSLVKRAKHQFAELANYRTQLIIGMNGNI 208
Query: 210 WVSAIDENKSGGFIQNMEVVKLSD-RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
W+ ++ + S E +D R+ + R+ N IKAL ++V + SI+ + SL+
Sbjct: 209 WICSLQPSAS----DAEETEHATDARQNVARVANCIKALGAAQVQIHPASIEASVAASLE 264
Query: 269 --YSTYDL 274
S +D+
Sbjct: 265 AGLSVFDV 272
>gi|401417760|ref|XP_003873372.1| putative exosome complex exonuclease [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489602|emb|CBZ24859.1| putative exosome complex exonuclease [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 307
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 141/240 (58%), Gaps = 16/240 (6%)
Query: 41 YLEGYMTGHGTFPDD--------EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
YL G+ T G P D EI A++ G +E ++++SV+ + RY EIG+VVVG
Sbjct: 29 YLRGFNTFAGNNPSDLALFHEGAGEIVAAISGHIEVTDRVISVKGLLPRYQPEIGDVVVG 88
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + KW VD NS + + L+SV PGG RRR DE MR+ + DL++AE+
Sbjct: 89 RILEVTGNKWQVDVNSTQTAIMLLSSVTEPGGILRRRGRGDELGMRQIFDQDDLVAAEVQ 148
Query: 153 QISTEGSLTLHTRSL-KYGKL-GQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYV 209
+IS +G ++LHTR+ KYG+L G GIL++V PSL++R+K F LA Q+I+G NG +
Sbjct: 149 RISPDGVMSLHTRAAEKYGRLSGLGILVSVRPSLVKRAKHQFVELADYSTQLIIGMNGNI 208
Query: 210 WVSAIDENKSGGFIQNMEVVKLSD-RETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
W+S++ + S E +D R+ + R+ N IK + ++V + SI+ + SL+
Sbjct: 209 WISSMQPSAS----DAEETEHAADARQNVARVANCIKTMGAAQVQIHPASIEASVAASLE 264
>gi|194381788|dbj|BAG64263.1| unnamed protein product [Homo sapiens]
Length = 150
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 93/117 (79%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLIS
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLIS 142
>gi|451997771|gb|EMD90236.1| hypothetical protein COCHEDRAFT_1022251 [Cochliobolus
heterostrophus C5]
Length = 344
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 120/197 (60%), Gaps = 17/197 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEE-----IKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE + +M GHGT+ + I ++V G + K N+L+SV+ + +RY EI
Sbjct: 41 IVTPGEHITSDPQWMRGHGTYIPSQPAGSTTIISTVAGTLHKTNKLLSVQPLRARYQPEI 100
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ + ++KW VD + + + L L+S+NLPGG RRR+ DE +R F +EGDL
Sbjct: 101 GDLVVGRIMTVGTKKWNVDIAAPMLANLPLSSINLPGGVLRRRTTVDELNIRTFFQEGDL 160
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPS----------LIRRSKSHFC-NL 195
+ AE+ + +G+ +LHTRSLKYGKL G+ ++ + ++R + F N
Sbjct: 161 LVAEVQSLHQDGTASLHTRSLKYGKLRNGVFTSITGAGGGILSRKGGVVRSRRQVFTLNT 220
Query: 196 ACG-AQVILGCNGYVWV 211
A G +ILG NGYV+V
Sbjct: 221 AAGEINIILGVNGYVFV 237
>gi|451847300|gb|EMD60608.1| hypothetical protein COCSADRAFT_40237 [Cochliobolus sativus ND90Pr]
Length = 344
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 120/197 (60%), Gaps = 17/197 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEE-----IKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
I+TPGE + +M GHGT+ + I ++V G + K N+L+SV+ + +RY EI
Sbjct: 41 IVTPGEHITSDPQWMRGHGTYIPSQPAGSTTIISTVAGTLHKTNKLLSVQPLRARYQPEI 100
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G++VVGR+ + ++KW VD + + + L L+S+NLPGG RRR+ DE +R F +EGDL
Sbjct: 101 GDLVVGRIMTVGTKKWNVDIAAPMLANLPLSSINLPGGVLRRRTTVDELNIRTFFQEGDL 160
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPS----------LIRRSKSHFC-NL 195
+ AE+ + +G+ +LHTRSLKYGKL G+ ++ + ++R + F N
Sbjct: 161 LVAEVQSLHQDGTASLHTRSLKYGKLRNGVFTSITGAGGGILSRKGGVVRSRRQVFTLNT 220
Query: 196 ACGA-QVILGCNGYVWV 211
A G +ILG NGYV++
Sbjct: 221 AAGEIDIILGVNGYVFI 237
>gi|124505351|ref|XP_001351417.1| exosome complex exonuclease rrp4, putative [Plasmodium falciparum
3D7]
gi|6562740|emb|CAB62879.1| exosome complex exonuclease rrp4, putative [Plasmodium falciparum
3D7]
Length = 338
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 32 ILTPGETV---EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
++ PGE V + ++ G G + +D+ A + G V +N+L+ V + +Y G +G+
Sbjct: 51 LVLPGECVLDKNDKDRFLKGGGLYEEDDMFYACILGRVNYINKLIYVEPLKGKYTGSVGD 110
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
++VG++ + + KW+V+ S + L ++ N+ QR R D M K D+I+
Sbjct: 111 LLVGKIKDISNDKWIVEIGSYCRAYLSISQTNISIFSQRIRLYNDVINMIHIYKPDDIIA 170
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGY 208
EI +IST+G++ LHTRS YGKL G+L+ VP +LI K H C Q+ILG NGY
Sbjct: 171 CEIQRISTDGTIILHTRSSIYGKLSNGVLIIVPQTLIHNQKKHIFVFPCNVQIILGMNGY 230
Query: 209 VWVSA-IDENKS---GGFIQNMEVVKLSDRETITR 239
+W+S+ I ++K QN+E K D + TR
Sbjct: 231 IWISSPIKKSKDTNPNSVDQNIEENKFEDVDHTTR 265
>gi|402081909|gb|EJT77054.1| exosome component 2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 336
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 143/280 (51%), Gaps = 46/280 (16%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + +M GHGT+ I +SV G V + N+L+SVR + +RY E+G++VV
Sbjct: 35 IVTPGEVITTDPQWMRGHGTYTVPPAIVSSVAGTVSRTNRLLSVRPVRARYTPEVGDLVV 94
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ +Q+++W VD + +AL L+++NLPGG R+R+ DE +R F EGDL+ AE+
Sbjct: 95 GRIVEVQARRWRVDVGASQLAALPLSAINLPGGVLRKRTDTDELQIRSFFAEGDLLVAEV 154
Query: 152 HQISTEGSLTLHTRSLK--------------------YGKLGQGILLTVPPSLIRRSKSH 191
Q+ +G LHTRSL+ G+ G G P + + ++
Sbjct: 155 QQLFGDGGAGLHTRSLRQVWTMEVASTAPSASTHPAAAGRKGGGQQARNPAATAAAAAAN 214
Query: 192 FCNLACGAQVILGCNGYVWVSAIDENKS--------GGFIQNM-EVVKLS---------D 233
V+LG NGYVW+S E S I NM E V S D
Sbjct: 215 RS-----IDVVLGVNGYVWISKHVEPPSDDPGAPTGATGIANMEEAVSASMYSSRNDPID 269
Query: 234 RET---ITRLNNVIKALAESKVMLFDTSIQYAYEESLKYS 270
ET I R+ VI AL E+ V + + ++ AY E+++ +
Sbjct: 270 PETMREIVRVRGVITALVENGVRVDEDMVERAYREAVEMA 309
>gi|70934048|ref|XP_738308.1| exosome complex exonuclease rrp4 [Plasmodium chabaudi chabaudi]
gi|56514419|emb|CAH79701.1| exosome complex exonuclease rrp4, putative [Plasmodium chabaudi
chabaudi]
Length = 326
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 19/207 (9%)
Query: 32 ILTPGETVEYLEG-----YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
++ PGE+V LE ++ G G + ++E A + G V +N+LV V + +Y G +
Sbjct: 50 LVLPGESV--LEKKDKARFLKGSGLYEEEENFCACILGSVNYINKLVYVEPLRGKYTGSV 107
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G+++VG++ + + KWVV+ S + L +T N+ QR R D M K D+
Sbjct: 108 GDLLVGKIKDINNDKWVVEIGSYCRALLSITQTNISLFSQRIRLYNDVINMINIYKPNDV 167
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCN 206
I+ E+ +I T+G + LHTRS YGKL GIL+TVP +L++ K H C Q+ILG N
Sbjct: 168 IACEVQRILTDGCIVLHTRSSIYGKLSNGILITVPQTLVQNQKKHIFVFPCNVQIILGMN 227
Query: 207 GYVWVS------------AIDENKSGG 221
G++W+S +IDEN G
Sbjct: 228 GFIWISSPIKKSKDTNPNSIDENIEGN 254
>gi|399216206|emb|CCF72894.1| unnamed protein product [Babesia microti strain RI]
Length = 260
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 10/238 (4%)
Query: 32 ILTPGETVEYL-EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
I+ PG+ V + + G+G + + + AS+ G +E++NQL+ V+ + RY+ ++G++V
Sbjct: 7 IVIPGDCVASTSKTLLNGYGIYKHEGVLYASLMGKLEQINQLIYVKPLKGRYMAQVGDIV 66
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGR+ + KW+V+ S+ + L + VNL RRR +D M DLIS E
Sbjct: 67 VGRIDEIVGNKWMVEIGSVERAQLSIFQVNLSELSGRRRLNEDLYDMSNIFALDDLISCE 126
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ +I EG+ L RS K GKL GI+LTV P LI+R H G ++ LGCNG +W
Sbjct: 127 VQRIMAEGTALLQIRSDKLGKLKNGIVLTVQPYLIKRQAKHIYIFDFGVKITLGCNGKIW 186
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
+S+ D N + + DR+ I+ + +I+ +A +++ I Y+ +K
Sbjct: 187 LSSSDTNDAPSY---------GDRQNISIIRAIIQTIASHYIIIHFDMISEMYKMFIK 235
>gi|239613289|gb|EEQ90276.1| exosome complex exonuclease Rrp4 [Ajellomyces dermatitidis ER-3]
Length = 384
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 147/301 (48%), Gaps = 65/301 (21%)
Query: 32 ILTPGETVEYLEGYMT-----------GHGTF--PDDEEIK---------------ASVG 63
I+TPGE V +M+ GHGTF P A+V
Sbjct: 49 IVTPGEVVTDDPQWMSLQLTAPLPKSRGHGTFTRPAHNPFHITTPSTSTSTSNTIIATVA 108
Query: 64 GVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPG 123
G V+K N+L+SV+ + +RY EIG++V+GR+ +QS++W VD + L + L L+++NLPG
Sbjct: 109 GTVQKTNKLLSVQPLRARYTPEIGDLVIGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPG 168
Query: 124 GEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV--- 180
G R+R+ DE +R F EGDL+ AE+ + +G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 GILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLAVGGM 228
Query: 181 ---------PPSLIRRSKSHFCNLACGA---QVILGCNGYVWVSA--------------- 213
+ R + + GA V+LG NGY+W+S
Sbjct: 229 SAAGGVVRGSGVVRSRRQVWTFPASHGAGEIDVVLGVNGYIWISKHVGDGAVGGAAGGDV 288
Query: 214 ----IDENKSGGFI--QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267
++E S QN E + L+ R I RL I+ L E V + + ++ AY SL
Sbjct: 289 SITRLEEMVSSAIYSSQNDE-IGLATRREIARLCGCIRVLVEGGVKVDEDTVMKAYRASL 347
Query: 268 K 268
+
Sbjct: 348 E 348
>gi|154413907|ref|XP_001579982.1| exonuclease [Trichomonas vaginalis G3]
gi|121914195|gb|EAY18996.1| exonuclease, putative [Trichomonas vaginalis G3]
Length = 253
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 21/245 (8%)
Query: 35 PGETV-EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGR 93
PG+ + E EG M G+G + +I A+V G ++ +NQLVSV M S Y +G++VVGR
Sbjct: 10 PGQVIFENSEGLMPGNGVVLSNGKIIATVRGFIKIINQLVSVTPMTSIYSPNVGDIVVGR 69
Query: 94 VTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQ 153
+ +Q Q+W V + + + L L+S+ LP GE RRR+ DE MR++ GDLI AE+
Sbjct: 70 IESIQKQRWRVQIGAAVLADLRLSSIFLPDGELRRRTTTDERNMRQYFDVGDLICAEVQN 129
Query: 154 ISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA---QVILGCNGYVW 210
IS G +LHTR KL GI++ VP LI+R +H LA V+ G NG +W
Sbjct: 130 IS--GGTSLHTREQHPKKLENGIVVDVPSRLIKRVPNHIVVLAFSGLRFNVVFGLNGSIW 187
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYS 270
+S D +++ I R+ N I LA + +++ ++ ++++ +
Sbjct: 188 ISP-DTDEA--------------YPLIPRIRNCILLLATYEQLVYSDNVCQVFDKTSEIP 232
Query: 271 TYDLL 275
D+L
Sbjct: 233 IADIL 237
>gi|320586714|gb|EFW99384.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
Length = 576
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 99/145 (68%), Gaps = 2/145 (1%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEE--IKASVGGVVEKVNQLVSVRAMNSRYIGEIG 87
D I+TPGE V +M GHGT+ D+ I +S+ G V + N+L+SVR + +RY E+G
Sbjct: 214 DEIVTPGEVVTEDAKWMRGHGTYADESGAGIVSSLAGTVMRTNRLLSVRPLRARYAPEVG 273
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
++VVGR+ +Q+++W VD + +AL L+++NLPGG R+R+ DE +R F EGDL+
Sbjct: 274 DLVVGRIVEVQARRWRVDVGAAQLAALPLSAINLPGGVLRKRTETDELQIRSFFAEGDLL 333
Query: 148 SAEIHQISTEGSLTLHTRSLKYGKL 172
AE+ QI +G+ LHTRSL+YGKL
Sbjct: 334 LAEVQQIFADGAAVLHTRSLRYGKL 358
>gi|389582211|dbj|GAB64766.1| exosome complex exonuclease rrp4 [Plasmodium cynomolgi strain B]
Length = 328
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 100/169 (59%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
++ G G + +DE+ A + G V +N+LV V + +Y G +G+++VG++ + + KWVV
Sbjct: 66 FLKGSGLYEEDEKYFACIAGTVNYINKLVYVEPLKGKYTGAVGDLLVGKIKDITNDKWVV 125
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
+ S ++ L ++ N+ QR R D M K D+I+ E+ +I +G + LHT
Sbjct: 126 EIGSYCKALLSISQTNISLFCQRIRLYNDVINMINIYKPNDIIACEVQRILADGCIILHT 185
Query: 165 RSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSA 213
RS YGKL GIL+TVP +LI+ K H C QVILG NG++WVS+
Sbjct: 186 RSTIYGKLSNGILITVPQTLIQNQKKHIFVFPCNVQVILGMNGFIWVSS 234
>gi|119195321|ref|XP_001248264.1| hypothetical protein CIMG_02035 [Coccidioides immitis RS]
Length = 293
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 13/162 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEE-------------IKASVGGVVEKVNQLVSVRAM 78
I+TPGE V +M GHGTF I A+V G V K N+L+SV +
Sbjct: 51 IVTPGEVVTDDPQWMRGHGTFTPAPPGFSSTAQSSLSSTIIATVAGTVLKTNKLLSVYPL 110
Query: 79 NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMR 138
+RY EIG++VVGR+ +QS++W VD + L + L L+++NLPGG R+R+ DE +R
Sbjct: 111 RARYNPEIGDLVVGRIVEVQSRRWKVDVAAPLLANLPLSAINLPGGILRKRTTADELQIR 170
Query: 139 EFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV 180
F EGDL+ AE+ + +GS +LHTRSLKYGKL GI L V
Sbjct: 171 SFFNEGDLVVAEVQSVHQDGSASLHTRSLKYGKLRNGIFLAV 212
>gi|156371056|ref|XP_001628582.1| predicted protein [Nematostella vectensis]
gi|156215562|gb|EDO36519.1| predicted protein [Nematostella vectensis]
Length = 214
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 52/219 (23%)
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREF 140
RY GEIG+VVVGR+T + ++W V+T S L+S L L+SVNLPGGE
Sbjct: 40 RYNGEIGDVVVGRITEVGQKRWKVETFSKLDSVLMLSSVNLPGGEL-------------- 85
Query: 141 LKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQ 200
L G L+ +PP++++R K+HF NL CGA
Sbjct: 86 -------------------------------LKHGTLVKIPPTMVKRCKTHFHNLPCGAT 114
Query: 201 VILGCNGYVWVSAIDENKSGGF-------IQNMEVVKLSDRETITRLNNVIKALAESKVM 253
VI+G NGY+++S I ++ G ++ ++ +DRE + RL N + LA ++
Sbjct: 115 VIIGNNGYIFLSTIITPEALGTDGMAEPDQPDISEIRAADREMLARLRNCVVLLAHESIL 174
Query: 254 LFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
LFD+S+ YAY+ESLK+S +LLKPE ++ Q+LQ
Sbjct: 175 LFDSSLMYAYDESLKFSVKELLKPEVIEEIGTMVRQRLQ 213
>gi|68073645|ref|XP_678737.1| exosome complex exonuclease rrp4 [Plasmodium berghei strain ANKA]
gi|56499299|emb|CAI04654.1| exosome complex exonuclease rrp4, putative [Plasmodium berghei]
Length = 326
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 107/187 (57%), Gaps = 7/187 (3%)
Query: 32 ILTPGETVEYLEG-----YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
++ PGE V LE ++ G G + ++E A + G V +N+LV V + +Y G +
Sbjct: 50 LVLPGEAV--LEKKDKPRFLKGSGLYEEEENFCACLLGSVNYINKLVYVEPLRGKYTGSV 107
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G+++VG++ + + KWVV+ S + L +T N+ QR R D M K D+
Sbjct: 108 GDLLVGKIKDINNDKWVVEIGSYCRALLSITQTNISLFSQRIRLYNDVINMINIYKPNDV 167
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCN 206
I+ E+ +I T+G + LHTRS YGKL GIL+TVP +L++ K H C Q+ILG N
Sbjct: 168 IACEVQRILTDGCIILHTRSSIYGKLSNGILITVPQTLVQNQKKHIFVFPCNVQIILGMN 227
Query: 207 GYVWVSA 213
G++W+S+
Sbjct: 228 GFIWISS 234
>gi|83286482|ref|XP_730181.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23489830|gb|EAA21746.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 326
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 107/187 (57%), Gaps = 7/187 (3%)
Query: 32 ILTPGETVEYLEG-----YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI 86
++ PGE V LE ++ G G + ++E A + G V +N+LV V + +Y G +
Sbjct: 50 LVLPGEAV--LEKKDKPRFLKGSGLYEEEENFCACLLGSVNYINKLVYVEPLRGKYTGSV 107
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G+++VG++ + + KWVV+ S + L +T N+ QR R D M K D+
Sbjct: 108 GDLLVGKIKDINNDKWVVEIGSYCRALLSITQTNISLFSQRIRLYNDVINMINIYKPNDV 167
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCN 206
I+ E+ +I T+G + LHTRS YGKL GIL+TVP +L++ K H C Q+ILG N
Sbjct: 168 IACEVQRILTDGCIILHTRSSIYGKLSNGILITVPQTLVQNQKKHIFVFPCNVQIILGMN 227
Query: 207 GYVWVSA 213
G++W+S+
Sbjct: 228 GFIWISS 234
>gi|449310616|gb|AGE92535.1| exosome complex exonuclease ribosomal RNA processing protein 4,
partial [Leishmania braziliensis]
Length = 296
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 142/247 (57%), Gaps = 16/247 (6%)
Query: 41 YLEGYMTGHGTFPDD--------EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
YL G+ T G P D EI A++ G +E ++++SV+ + RY EIG+VVVG
Sbjct: 22 YLRGFNTFAGNKPSDVALLHEGAGEIVAAINGYIEVTDRVISVKGLLPRYQPEIGDVVVG 81
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + KW VD NS + + L++V PGG RRR DE MR+ + DL++AE+
Sbjct: 82 RILEVTGNKWQVDVNSSQAAIMLLSNVTEPGGILRRRGRGDELGMRQLFDQDDLVAAEVQ 141
Query: 153 QISTEGSLTLHTRSL-KYGK-LGQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYV 209
+IS +G ++LHTR+ KYG+ LG GIL++V PSL++R+K F L Q+I+G NG +
Sbjct: 142 RISPDGVMSLHTRAAEKYGRLLGPGILVSVRPSLVKRAKHQFVELTDYNTQLIVGMNGNI 201
Query: 210 WVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK- 268
W+ ++ + ++ V + + R+ N IKAL ++V ++ SI+ SL+
Sbjct: 202 WICSMQSYATETEEKDHAV---DTYQNVARVANCIKALGAAQVQIYPASIKATVAASLEA 258
Query: 269 -YSTYDL 274
S +D+
Sbjct: 259 GLSAFDV 265
>gi|154334089|ref|XP_001562190.1| putative exosome complex exonuclease [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060312|emb|CAM37470.1| putative exosome complex exonuclease [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 303
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 142/247 (57%), Gaps = 16/247 (6%)
Query: 41 YLEGYMTGHGTFPDD--------EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
YL G+ T G P D EI A++ G +E ++++SV+ + RY EIG+VVVG
Sbjct: 29 YLRGFNTFAGNKPSDVALLHEGAGEIVAAINGYIEVTDRVISVKGLLPRYQPEIGDVVVG 88
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + KW VD NS + + L++V PGG RRR DE MR+ + DL++AE+
Sbjct: 89 RILEVTGNKWQVDVNSSQAAIMLLSNVTEPGGILRRRGRGDELGMRQLFDQDDLVAAEVQ 148
Query: 153 QISTEGSLTLHTRSL-KYGK-LGQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYV 209
+IS +G ++LHTR+ KYG+ LG GIL++V PSL++R+K F L Q+I+G NG +
Sbjct: 149 RISPDGVMSLHTRAAEKYGRLLGPGILVSVRPSLVKRAKHQFVELTDYNTQLIVGMNGNI 208
Query: 210 WVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK- 268
W+ ++ + ++ V + + R+ N IKAL ++V ++ SI+ SL+
Sbjct: 209 WICSMQSYATETEEKDHAV---DTYQNVARVANCIKALGAAQVQIYPASIKATVAASLEA 265
Query: 269 -YSTYDL 274
S +D+
Sbjct: 266 GLSAFDV 272
>gi|429327206|gb|AFZ78966.1| hypothetical protein BEWA_018090 [Babesia equi]
Length = 271
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 11/222 (4%)
Query: 32 ILTPGETVEY-LEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
++ PGE V ++ GHG + ++ +KAS G + +VNQL+ V +N RY+ ++G+++
Sbjct: 14 VVLPGEVVNPDASSWLQGHGIYTENNVLKASYLGKIRRVNQLIYVEPLNGRYMAQVGDII 73
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VG V + KW+++ S + L + VN RR+ +D M D+++ E
Sbjct: 74 VGTVDEISGNKWLLEVGSPERAQLSIFQVNSEDLANRRKVDEDVYEMSNSFAVNDVLACE 133
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ +IS G++ L TR+ ++G+LG G L+ V P+LI R H +L CG ++ILGCNGY+W
Sbjct: 134 VQRISPTGTIMLQTRTSRHGRLGNGTLVIVRPNLITRESKHIYDLDCGIRIILGCNGYIW 193
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
+++ ++ + RE I L ++I L+ +
Sbjct: 194 LTSCNDGS----------IDTPCRENIRTLRSIILGLSSRHI 225
>gi|400598530|gb|EJP66239.1| exosome complex exonuclease RRP4 [Beauveria bassiana ARSEF 2860]
Length = 327
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 134/251 (53%), Gaps = 30/251 (11%)
Query: 48 GHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
GHGT+ I +S+ G + + N+L+SVR + +RY EIG++VVGR+ +Q+++W VD
Sbjct: 50 GHGTYVPHGSTSITSSLAGTLTRTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWRVD 109
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
+ + L ++++NLPGG R+R+ DE +R F EGDL+ AE+ Q+ +G+ +LHTR
Sbjct: 110 VAASQLAILQISAINLPGGILRKRTETDELQIRSFFSEGDLVVAEVQQLHQDGAASLHTR 169
Query: 166 SLKYGKLGQGILLTVP-----PSLIRRSKSHF-------CNLACGAQVILGCNGYVWVSA 213
SLKYGKL G+ +V ++R + + A V+LG NGY+W+S
Sbjct: 170 SLKYGKLRNGVFASVSGTGGGAGVVRAKRQAWTMEPVEGAGAAHKMDVLLGVNGYIWISR 229
Query: 214 I---DENKSGGFIQNME-------------VVKLSDRETITRLNNVIKALAESKVMLFDT 257
D + ME V + I R+ +VI AL E+ + + +
Sbjct: 230 HVEGDAAAEAAGVNRMEETVSSKVYSSQNDPVDVPTMREIARVRSVILALVENGLRVDED 289
Query: 258 SIQYAYEESLK 268
++ Y E+++
Sbjct: 290 TVTRGYHEAVE 300
>gi|449310640|gb|AGE92547.1| exosome complex exonuclease ribosomal RNA processing protein 4
[Leishmania braziliensis]
Length = 303
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 142/247 (57%), Gaps = 16/247 (6%)
Query: 41 YLEGYMTGHGTFPDD--------EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
YL G+ T G P D EI A++ G +E ++++SV+ + RY EIG+VVVG
Sbjct: 29 YLRGFNTFAGNKPSDVALLHEGAGEIVAAIDGYIEVTDRVISVKGLLPRYQPEIGDVVVG 88
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + KW VD NS + + L++V PGG RRR DE MR+ + DL++AE+
Sbjct: 89 RILEVTGNKWQVDVNSSQAAIMLLSNVTEPGGILRRRGRGDELGMRQLFDQDDLVAAEVQ 148
Query: 153 QISTEGSLTLHTRSL-KYGK-LGQGILLTVPPSLIRRSKSHFCNLA-CGAQVILGCNGYV 209
+IS +G ++LHTR+ KYG+ LG GIL++V PSL++R+K F L Q+I+G NG +
Sbjct: 149 RISPDGVMSLHTRAAEKYGRLLGPGILVSVRPSLVKRAKHQFVELTDYNTQLIVGMNGNI 208
Query: 210 WVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK- 268
W+ ++ + ++ V + + R+ N IKAL ++V ++ SI+ SL+
Sbjct: 209 WICSMQSYATETEEKDHAV---DTYQNVARVANCIKALGAAQVQIYPASIKATVAASLEA 265
Query: 269 -YSTYDL 274
S +D+
Sbjct: 266 GLSAFDV 272
>gi|156094565|ref|XP_001613319.1| exosome complex exonuclease rrp4 [Plasmodium vivax Sal-1]
gi|148802193|gb|EDL43592.1| exosome complex exonuclease rrp4, putative [Plasmodium vivax]
Length = 345
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 107/185 (57%), Gaps = 3/185 (1%)
Query: 32 ILTPGETVEYLEG---YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
++ PGE + + ++ G G + +DE+ A + G V +N+LV V + +Y G +G+
Sbjct: 50 LVLPGEAILSKKDKGRFLKGSGLYEEDEKYFACIVGTVNYINKLVYVEPLRGKYTGAVGD 109
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
++VG++ + + KWVV+ S ++ L ++ N+ QR R D M K D+I+
Sbjct: 110 LLVGKIKDISNDKWVVEIGSYCKALLSISQTNISVFCQRIRLYNDVINMINIYKPNDIIA 169
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGY 208
E+ +I +G + LHTRS YGKL GIL+TVP +LI+ K H C QVILG NG+
Sbjct: 170 CEVQRILADGCIVLHTRSSIYGKLSNGILITVPQTLIQNQKKHIFVFPCNVQVILGMNGF 229
Query: 209 VWVSA 213
+WVS+
Sbjct: 230 IWVSS 234
>gi|223998216|ref|XP_002288781.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975889|gb|EED94217.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 403
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 138/275 (50%), Gaps = 56/275 (20%)
Query: 60 ASVGGVVEKVNQLVSVRAMN-SRYIGEIGEVVVGRVTGLQSQKWVVD-----------TN 107
ASV G VE+VN+L+SV ++ S Y+G++G+++VGR+ G+ +W V
Sbjct: 118 ASVAGTVERVNKLISVIPISPSIYVGQVGDLIVGRIVGVGGSRWKVSLTCSPLTSSASNG 177
Query: 108 SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSL 167
S+ E L L+ VNLPGG QR R+ +D MR KEGDL++ E+ + +G+L LHTRSL
Sbjct: 178 SMKEGQLPLSGVNLPGGVQRIRTSEDVLAMRSLFKEGDLLTCEVQNVQKDGTLILHTRSL 237
Query: 168 KYGKLGQGILLTVPPSLIRRSKSHFCNL----------------------ACGAQVILGC 205
+YGKL G+L+TVPPSL+ R K+HF L V LG
Sbjct: 238 RYGKLDNGVLVTVPPSLVGRRKNHFVTLKGMVAGKNTDDNGMDVDGEEEETGDVDVYLGL 297
Query: 206 NGYVWV---------SAI--DENKSGGFIQNMEV---------VKLSDRETITRLNNVIK 245
NG +W+ +AI D+++ + ++ V S RE I R+ N I+
Sbjct: 298 NGGIWIQRTVPPKWENAIRADQDERAPLAETLQKLRQRHATTRVSPSMREGIARVRNSIE 357
Query: 246 ALAESKVMLFDTSIQYAYEESL--KYSTYDLLKPE 278
L + +I+ S+ + ++L PE
Sbjct: 358 CLRLVHCQITPDTIEIVARASVDARVRVAEMLLPE 392
>gi|221052678|ref|XP_002261062.1| exosome complex exonuclease rrp4 [Plasmodium knowlesi strain H]
gi|194247066|emb|CAQ38250.1| exosome complex exonuclease rrp4, putative [Plasmodium knowlesi
strain H]
Length = 328
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 107/185 (57%), Gaps = 3/185 (1%)
Query: 32 ILTPGETVEYLEG---YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
++ PGE + + ++ G G + +DE+ A + G V +N+LV V + +Y G +G+
Sbjct: 50 LVLPGEAILSKKDKGRFLKGSGLYEEDEKYFACIVGTVNYINKLVYVEPLRGKYTGAVGD 109
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
++VG++ + + KWVV+ S ++ L ++ N+ QR R D M K D+I+
Sbjct: 110 LLVGKIKDISNDKWVVEIGSYCKALLSISQTNISLFCQRIRLYNDVINMINIYKPNDIIA 169
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGY 208
E+ +I +G + LHTRS YGKL GIL+TVP +LI+ K H C Q+ILG NG+
Sbjct: 170 CEVQRILPDGCIILHTRSSIYGKLSNGILITVPQTLIQNQKKHIFVFPCNVQIILGMNGF 229
Query: 209 VWVSA 213
+W+S+
Sbjct: 230 IWISS 234
>gi|398412770|ref|XP_003857703.1| hypothetical protein MYCGRDRAFT_32207 [Zymoseptoria tritici IPO323]
gi|339477588|gb|EGP92679.1| hypothetical protein MYCGRDRAFT_32207 [Zymoseptoria tritici IPO323]
Length = 311
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 121/190 (63%), Gaps = 10/190 (5%)
Query: 32 ILTPGETVEYLEGYMTGHGTF--P-DDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
+LTPG+ + YM GHGT+ P + I +++ G + K N+L+S+ + +RY EIG+
Sbjct: 18 LLTPGQPITSDPQYMRGHGTYLPPLSQQTITSTLAGTLLKTNKLLSILPLRARYTPEIGD 77
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
+V+GR+ +QS++W VD N+ L + L L+S+NLPGG RRR+ DE +R F +EG+L+
Sbjct: 78 LVIGRIYEVQSRRWKVDINAPLLANLLLSSINLPGGALRRRTSVDELNVRSFFQEGELLV 137
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVP----PSLIRRSKSHFC-NLACGAQ--V 201
AE+ + +GS +LHTRSLKYGKL G ++V ++R + F A G + V
Sbjct: 138 AEVQSLFGDGSASLHTRSLKYGKLRNGNFVSVSGMGGTGVVRSKRQIFSIQTARGGEVGV 197
Query: 202 ILGCNGYVWV 211
ILG NG+VWV
Sbjct: 198 ILGVNGFVWV 207
>gi|397628046|gb|EJK68717.1| hypothetical protein THAOC_10080 [Thalassiosira oceanica]
Length = 388
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 141/282 (50%), Gaps = 48/282 (17%)
Query: 56 EEIKASVGGVVEKVNQLVSVRAMNSR-YIGEIGEVVVGRVTGLQSQKWVVD--------- 105
+ + ASV G VE+VN+L+SV ++S Y G++G++VVGR+ G+ +W V
Sbjct: 107 QRLIASVAGTVERVNKLISVIPLSSSVYTGQVGDLVVGRIVGVGGSRWKVSLACSPPSSS 166
Query: 106 --TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLH 163
++ E L L+ VNLPGG QR R+ +D MR KEGDL++ EI Q+ +G+L LH
Sbjct: 167 GSNGAMKEGQLPLSGVNLPGGVQRIRTSEDVLAMRTLFKEGDLLTCEIQQVQNDGTLILH 226
Query: 164 TRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA--------------CGAQVILGCNGYV 209
TRSL+YGKL G+LLTVPPSL+ R K+HF L V LG NG +
Sbjct: 227 TRSLRYGKLENGVLLTVPPSLVGRRKNHFVTLKGLKTSADAVDEDGEGDVDVYLGLNGGI 286
Query: 210 WVSAI-----------DENKSGGFIQNMEV---------VKLSDRETITRLNNVIKALAE 249
W+ D+++ + ++ V S RE I R+ N ++ L
Sbjct: 287 WIQRTVPSEWEEAIRSDQDERAPLAETLQKLRHRHATTRVSRSMRERIARVRNAVECLRL 346
Query: 250 SKVMLFDTSIQYAYEESLKYSTY--DLLKPESKLDLVLCTAQ 289
+ SI+ SL D+L PE+ + L T Q
Sbjct: 347 VHCQISPDSIEAVARASLDAGVRVADMLLPENVVKLTEVTRQ 388
>gi|84995806|ref|XP_952625.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302786|emb|CAI74893.1| hypothetical protein, conserved [Theileria annulata]
Length = 293
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 108/183 (59%), Gaps = 7/183 (3%)
Query: 32 ILTPGETVEYLEGYM-TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
++ PG+ V ++ GHGT+ D++++AS G V+ VNQLV V +Y+G+IG++V
Sbjct: 7 VVVPGDVVSSDSSFLLQGHGTYVSDKQLRASYLGSVKHVNQLVYVEPFGGKYVGQIGDIV 66
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
+G V +Q KW++D NS+ + L + VN RR+ +D M D++S E
Sbjct: 67 IGVVDSIQGNKWLLDVNSVELAQLSILQVNTEELANRRKIDEDIYEMSNLFNVNDIVSCE 126
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
I +IS+ G++ L TR+ KYGKL GIL+ + P+L+ R H ++ CG +GY+W
Sbjct: 127 IQRISSTGTIMLQTRTSKYGKLENGILVKIRPNLVIRKGKHIYDMVCGF------SGYIW 180
Query: 211 VSA 213
+++
Sbjct: 181 LTS 183
>gi|116201531|ref|XP_001226577.1| hypothetical protein CHGG_08650 [Chaetomium globosum CBS 148.51]
gi|88177168|gb|EAQ84636.1| hypothetical protein CHGG_08650 [Chaetomium globosum CBS 148.51]
Length = 324
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 8/152 (5%)
Query: 32 ILTPGETVEYLEGYMTGHGTF-PDDEEIKA-------SVGGVVEKVNQLVSVRAMNSRYI 83
I+TPGE + +M GHGT+ P +A SV G V + N+L+SVR + +RY
Sbjct: 75 IVTPGEQITDDPQWMRGHGTYIPSTSTGRAAAGAIVSSVAGTVARTNKLLSVRPLRARYT 134
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
E+G++VVGR+ +Q+++W VD S +AL L+++NLPGG R+R+ DE +R F E
Sbjct: 135 PEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRSFFAE 194
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQG 175
GDL+ AE+ Q+ +G LHTRSLKYGKL G
Sbjct: 195 GDLLVAEVQQLFGDGGAVLHTRSLKYGKLRNG 226
>gi|440492276|gb|ELQ74858.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4
[Trachipleistophora hominis]
Length = 217
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 118/206 (57%), Gaps = 4/206 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVV 90
+ PGE V +E + H T+P + I +SV G + ++N+LV V + RYI G+++
Sbjct: 1 MFIPGEKVCDIEDNIYSHNTYPHNTSIHSSVLGTLTRINKLVMVEPCTTYRYIPLAGDII 60
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGRV+ L ++W ++ N+ LE L LT++ LP QRR+ QDE +M F GD++ AE
Sbjct: 61 VGRVSMLSVKRWKIEANAQLECILSLTTIALPDNVQRRKLEQDEMLMHSFFDVGDVLVAE 120
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
I +++ GS L TR+ KYGKL G+L VP ++ KS F + ++G NGY++
Sbjct: 121 IQKVNL-GSAVLSTRNEKYGKLTNGVLRVVPLRIVGSYKSSFVENE-HLKFVIGANGYIF 178
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRET 236
+ + N++ + + + + D+ T
Sbjct: 179 IQ-LRHNEAVNYAKMVAALHYFDKCT 203
>gi|384497408|gb|EIE87899.1| hypothetical protein RO3G_12610 [Rhizopus delemar RA 99-880]
Length = 161
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 87/125 (69%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PGETV + +M GHGT+ D E + +SV GVVEKVN+L+SVR + +RY EIG++VV
Sbjct: 30 LVNPGETVTVDQQFMRGHGTYTDGEGVISSVAGVVEKVNKLLSVRPLKTRYTAEIGDIVV 89
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T + ++W VD NS ++ L L+SV+LPGG QRR++ DE MR+F EGD + I
Sbjct: 90 GRITEVAMRRWKVDVNSRQDANLLLSSVSLPGGVQRRKNEADELQMRQFFAEGDALVKWI 149
Query: 152 HQIST 156
+ T
Sbjct: 150 FYMCT 154
>gi|297848234|ref|XP_002891998.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337840|gb|EFH68257.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 303
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 119/207 (57%), Gaps = 7/207 (3%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
+ GHGT D E+ A+V GVV V++LV +R + +RY E+ ++VVGRV + W ++
Sbjct: 51 LKGHGTSEVDGELMATVCGVVTHVDKLVYIRTLRARYKPEVKDIVVGRVIEVSKSCWRLE 110
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
NS + L L+S + QRR++ DE MR + E D++ AE+ I +G L L
Sbjct: 111 LNSTKDGILKLSS--MDNDVQRRKTYVDELNMRNIIVEDDVVCAEVGCIHRDGGLELRAT 168
Query: 166 SLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWVSAIDENKSGGFIQ 224
S KYGKL +G L V P L++RS HF + + G +I+G NG++WV + + +
Sbjct: 169 SYKYGKLEKGQHLMVDPYLVKRSNIHFHYIESLGIDLIIGRNGFIWVGEHVQAQDHMILD 228
Query: 225 NMEVVK---LSDRETITRLNNVIKALA 248
+ E++K L R++I R+ N I+ L+
Sbjct: 229 D-EMIKHTSLETRQSILRIGNAIRVLS 254
>gi|429965501|gb|ELA47498.1| hypothetical protein VCUG_01030 [Vavraia culicis 'floridensis']
Length = 237
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 117/204 (57%), Gaps = 4/204 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVR-AMNSRYIGEIGEVV 90
+ PGE V +E + H T+P + I +SV G + ++N+LV + RYI G+++
Sbjct: 21 MFIPGEKVCDIEDSIYSHNTYPHNTSIHSSVLGTLTRINKLVMIEPCTRYRYIPLAGDII 80
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VGRV L ++W ++ N+ LE L+LT++ LP QRR+ QDE +M F D++ AE
Sbjct: 81 VGRVAMLSVKRWKIEANAQLECILNLTTIALPDNAQRRKLEQDEMLMHSFFDVDDVLVAE 140
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
I +++ GS L TR+ +YGKL G+L VP + +S F + ++G NGYV+
Sbjct: 141 IQKVNV-GSAVLSTRNERYGKLTNGVLKIVPLCAVGSYRSSFVENE-QLRFVVGANGYVF 198
Query: 211 VSAIDENKSGGFIQNMEVVKLSDR 234
+ + +N++ G+ + + V+ D+
Sbjct: 199 IQ-LRKNEAVGYAKMVAAVQYLDK 221
>gi|167389149|ref|XP_001733444.1| exosome complex exonuclease RRP4 [Entamoeba dispar SAW760]
gi|165897725|gb|EDR24803.1| exosome complex exonuclease RRP4, putative [Entamoeba dispar
SAW760]
Length = 197
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 90/146 (61%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+TPG+ + Y EG + G+G +D E + V G VE++N+LV V + SRY G +G+VVVG
Sbjct: 12 VTPGDEIFYEEGCIPGNGIRIEDNEFISCVHGTVERINKLVCVNPIRSRYCGNVGDVVVG 71
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
R+ + W VD N L ++S+NLP G QRRR+ D ++ F +LI AE+
Sbjct: 72 RIVSVGVGFWKVDINGKNNGLLQISSINLPDGIQRRRTEIDNLNIKTFFDVNELICAEVQ 131
Query: 153 QISTEGSLTLHTRSLKYGKLGQGILL 178
++ + + LHTR+ +YGKL +GIL+
Sbjct: 132 SMNGQSCIQLHTRNERYGKLNEGILI 157
>gi|256052273|ref|XP_002569699.1| rrp4 [Schistosoma mansoni]
gi|350645156|emb|CCD60164.1| rrp4, putative [Schistosoma mansoni]
Length = 267
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 105/199 (52%), Gaps = 26/199 (13%)
Query: 94 VTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQ 153
V ++ ++W VD NS L + L L +V LPGGE RR+S DE MR F+KEGDLI AE+H+
Sbjct: 10 VIPVEQRRWRVDVNSALLANLALANVKLPGGELRRKSEDDERAMRSFMKEGDLIVAEVHE 69
Query: 154 ISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA----------------- 196
+ +G+L LH + GKLG G LL +PPSLI+R K H LA
Sbjct: 70 VYKDGTLQLHMPGTRTGKLGGGCLLRIPPSLIKRQKIHRHRLAIPRMDTLDGPITISNEV 129
Query: 197 CGAQVILGCNGYVWVSAIDENKSG-GFIQNMEV--------VKLSDRETITRLNNVIKAL 247
+ILGCNGY+W G G +E L++R + R+ N I AL
Sbjct: 130 ISVGLILGCNGYIWTGPARAMDIGLGLSAPVEADLNTANESELLAERIAVCRVRNCILAL 189
Query: 248 AESKVMLFDTSIQYAYEES 266
+ + +++TS+ A E S
Sbjct: 190 THNGMPVWETSVLTACEAS 208
>gi|323456334|gb|EGB12201.1| hypothetical protein AURANDRAFT_4556, partial [Aureococcus
anophagefferens]
Length = 170
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Query: 48 GHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
GHGT+ D + + G +E+VN+LVSV + RY GE+G++VVG V + + W VD
Sbjct: 3 GHGTYVCRGDTSLVSCGAGYLERVNKLVSVVPVRGRYGGEVGDLVVGTVVEIAHKAWKVD 62
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
+ + L L+SV LP QR R+ D MR EGD++ E+ + +GS+ LHTR
Sbjct: 63 VGASRLATLALSSVTLPNDAQRIRTHADALAMRALYAEGDVVCCEVMAVHGDGSVHLHTR 122
Query: 166 SLKYGKLGQGILLTVPPSLIRRSKSHFCNLA--CGAQVILGCNGYVWV 211
S +YGKLG G L+ V L+RR HF L ++ +G NG VWV
Sbjct: 123 SNRYGKLGNGRLVAVNSHLVRRLPRHFVALPRDVDVELAVGNNGVVWV 170
>gi|219363297|ref|NP_001136723.1| hypothetical protein [Zea mays]
gi|194696768|gb|ACF82468.1| unknown [Zea mays]
gi|414584979|tpg|DAA35550.1| TPA: hypothetical protein ZEAMMB73_729707 [Zea mays]
Length = 209
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 4/143 (2%)
Query: 43 EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKW 102
+ + GHGT D E+ A++ GVVE+VN+LV VR + +RY E+G+++VGRV + ++W
Sbjct: 48 DNILKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRW 107
Query: 103 VVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTL 162
++ N ++ L L+S+NLP G QRRR+ DE MR +E D+I AE+ +GSL L
Sbjct: 108 RLEINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGSLHL 167
Query: 163 HTRSLKYGK----LGQGILLTVP 181
RS KYGK L I TVP
Sbjct: 168 QARSEKYGKVHASLDDIICATVP 190
>gi|444519250|gb|ELV12688.1| Tyrosine-protein kinase ABL1 [Tupaia chinensis]
Length = 959
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 74/102 (72%), Gaps = 3/102 (2%)
Query: 171 KLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNME 227
+LGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+ E+K +GGF+ N+E
Sbjct: 90 ELGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEDDAGGFVANLE 149
Query: 228 VVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKY 269
V LSDRE I+RL N I +L +++L+DTSI Y YE SL +
Sbjct: 150 PVSLSDREVISRLRNCIVSLVTQRMLLYDTSILYCYEASLPH 191
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 51/66 (77%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGL 97
GR+T L
Sbjct: 86 GRITEL 91
>gi|156089551|ref|XP_001612182.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799436|gb|EDO08614.1| conserved hypothetical protein [Babesia bovis]
Length = 262
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 105/190 (55%), Gaps = 3/190 (1%)
Query: 32 ILTPGETVE-YLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
I PG+ V + G GT+ D+ ++AS G ++VNQL V ++ +Y ++G+VV
Sbjct: 6 ITLPGDVVNTRASSLLQGRGTYVDNGVLRASFLGTFKQVNQLAYVEPLHGKYFAQVGDVV 65
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
VG V + W +D S + L + VN RR+ +D MR G +IS E
Sbjct: 66 VGVVQRIGGNCWYIDIGSSMRVQLSIFQVNTEELATRRKLDEDVYEMRNLFGIGHVISCE 125
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ ++S G++ L TR+ KYG+L GIL+ V P+L+ R H L+CG +ILGCNG++W
Sbjct: 126 VQRVSPNGTVLLQTRTSKYGRLNNGILVKVKPNLMLRQSKHMQELSCGISMILGCNGFIW 185
Query: 211 VSAIDENKSG 220
+ I KSG
Sbjct: 186 LGPIQ--KSG 193
>gi|297852158|ref|XP_002893960.1| hypothetical protein ARALYDRAFT_891345 [Arabidopsis lyrata subsp.
lyrata]
gi|297339802|gb|EFH70219.1| hypothetical protein ARALYDRAFT_891345 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 26/236 (11%)
Query: 15 ASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVS 74
A+DR+ L I+ + + E + GHGT + E+ +V GVV V++LV
Sbjct: 9 ATDRLKSLSSTTN-NSVIVADSIPLNHKEAFFKGHGTSLINGELLTTVCGVVINVDKLVY 67
Query: 75 VRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE 134
VR + +RY E+G++VVGRV + W V+ NS + L L+S+N+
Sbjct: 68 VRTLRARYKPEVGDIVVGRVIKVAQSHWKVELNSSQDGVLKLSSINMH------------ 115
Query: 135 EMMREFLKEGDLISAEIHQISTEGSLT-LHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC 193
D + AE+ + +GSL L S KYGKL +G LL V P L++RS HF
Sbjct: 116 ----------DSVQAEVGETQRDGSLQLLLAGSHKYGKLDKGQLLKVDPYLVKRSNLHFH 165
Query: 194 NL-ACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALA 248
+ G +ILG NG++WV + + + + E++ L R++I R+ N I+ L+
Sbjct: 166 FIETLGIDLILGRNGFIWVGEHAQVQYPMVLDD-EIISLKTRQSILRIGNAIRVLS 220
>gi|378756023|gb|EHY66048.1| hypothetical protein NERG_00744 [Nematocida sp. 1 ERTm2]
Length = 209
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 109/188 (57%), Gaps = 9/188 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPD----DEEI-KASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
PGE +EY + + GHG + + +EEI +S+ G V++V++L++V A Y +G++
Sbjct: 6 PGEILEYTDDCLEGHGIYKELDSKNEEIFVSSIAGTVKQVDRLITVEANTYWYTPGVGDI 65
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVGRVTG+ +++W ++ NS E+ L L +++L G QRR+ DE MM E+ GD++ A
Sbjct: 66 VVGRVTGIANKRWYIEINSRQEAILLLNAISLIGNVQRRKGELDEIMMTEYYSIGDIVIA 125
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQV--ILGCNG 207
E+ ST + LHTRS +Y K+ G+L+ + + G +V ++G NG
Sbjct: 126 EVQ--STGNKIQLHTRSSRYRKISFGVLIKLENISSENGVQYHKEKINGKEVEIVIGKNG 183
Query: 208 YVWVSAID 215
Y V + D
Sbjct: 184 YAVVHSDD 191
>gi|308161988|gb|EFO64417.1| RRP4-related protein [Giardia lamblia P15]
Length = 267
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 33 LTPGETVEYLEGY-MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE--IGEV 89
+ PGE + + + G G DE AS G++++V ++VSV+ + +I E +V
Sbjct: 20 VVPGEELSGVPNTSLPGQGVVQVDESFVASAVGIMKRVGKIVSVQP-SCLHIYEPVTADV 78
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GRV L KWV+D +I + LH+ ++N+P G QR R DE MR++L LIS
Sbjct: 79 VLGRVVRLLPNKWVLDIGAIQHATLHIDNLNIP-GIQRVRDTADESNMRQWLDVDQLISC 137
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGY 208
EI Q L TRS ++G L GIL+ VPP + S + F NL VILG NG+
Sbjct: 138 EIKQ-----GYALLTRSAQFGVLNHGILVKVPPCAVGPSTTAFANLDPLNVHVILGRNGW 192
Query: 209 VWVS 212
+W+S
Sbjct: 193 IWLS 196
>gi|159113511|ref|XP_001706982.1| Hypothetical protein GL50803_33022 [Giardia lamblia ATCC 50803]
gi|157435083|gb|EDO79308.1| hypothetical protein GL50803_33022 [Giardia lamblia ATCC 50803]
Length = 262
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 11/184 (5%)
Query: 33 LTPGETVEYLEGY-MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE--IGEV 89
+ PGE + + + G G DE ASV G +++V ++VSV+ + +I E +V
Sbjct: 20 MVPGEELPGVPNTSLPGQGVVRVDESFVASVVGNMKQVGKIVSVQP-SCLHIYEPVTADV 78
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+GRV L KWV+D +I + LH+ ++N+P G QR R DE MR++L LIS
Sbjct: 79 VLGRVVRLLPNKWVLDIGAIQHATLHIDNLNIP-GIQRVRDTADESNMRQWLDVDQLISC 137
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGY 208
E+ Q L TRS ++G L G+L+ VPP + S + F NL + VILG NG+
Sbjct: 138 EVKQ-----GYALLTRSAQFGVLNHGVLVKVPPCAVGPSTTAFANLDSLNVHVILGRNGW 192
Query: 209 VWVS 212
+W+S
Sbjct: 193 IWIS 196
>gi|241569187|ref|XP_002402537.1| rrp4, putative [Ixodes scapularis]
gi|215502017|gb|EEC11511.1| rrp4, putative [Ixodes scapularis]
Length = 132
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 74/109 (67%), Gaps = 6/109 (5%)
Query: 171 KLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVK 230
KLGQG L+ V PSL++R K+HF NL CG +ILG NGY+W++ + + F+Q++EV
Sbjct: 18 KLGQGTLVLVSPSLVKRCKTHFHNLPCGVHLILGNNGYIWIAPLLSEEGTKFVQSLEVT- 76
Query: 231 LSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPES 279
RE + R+ N + ALA VMLFDTS+ YAY++ + ST +L +P+S
Sbjct: 77 ---REAVARVRNCVLALARHHVMLFDTSVVYAYDD--RSSTVELEEPKS 120
>gi|449533228|ref|XP_004173578.1| PREDICTED: exosome complex component rrp4-like, partial [Cucumis
sativus]
Length = 153
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 75/109 (68%)
Query: 39 VEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQ 98
+ Y +G + GHGT + E+ AS+ GVVE+VN+L+ VRA+ +RY E+G++VVGRVT +
Sbjct: 44 LNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVA 103
Query: 99 SQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
++W +D N ++ L L+S+NLP G QRRR+ DE MR +E D+I
Sbjct: 104 PKRWRLDINYCQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVI 152
>gi|253744947|gb|EET01073.1| Hypothetical protein GL50581_1653 [Giardia intestinalis ATCC 50581]
Length = 260
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 33 LTPGETVEYLEGY-MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSR-YIGEIGEVV 90
+ PGE + + + G G +E ASV G ++ V ++VSV+ Y +V+
Sbjct: 20 VVPGEELSGVSNTSLPGQGVVKAEESFIASVVGNMKHVGKIVSVQPSCLHIYEPATADVI 79
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
+GRV L KWV+D ++ + LH+ ++N+P G QR R DE MR++L LIS E
Sbjct: 80 LGRVIRLLPNKWVLDIGAVQNATLHIDNMNIP-GIQRVRDTADESNMRQWLDVDQLISCE 138
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYV 209
+ Q L TRS ++G L GIL+ VPP + S + F NL VILG NG++
Sbjct: 139 VKQ-----GYALLTRSAQFGVLNHGILVKVPPCAVGPSTNAFANLDPLNVHVILGRNGWI 193
Query: 210 WVS 212
W+S
Sbjct: 194 WLS 196
>gi|361124035|gb|EHK96159.1| putative Exosome complex component rrp4 [Glarea lozoyensis 74030]
Length = 222
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 77/115 (66%), Gaps = 1/115 (0%)
Query: 21 PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDD-EEIKASVGGVVEKVNQLVSVRAMN 79
P + + I+TPGE V + +M GHGT+ + EI A+V G V+K N+L+SVR +
Sbjct: 40 PSKRARHYREDIVTPGEVVTDEDQWMRGHGTYHNHAREIIATVAGTVQKTNKLLSVRPLR 99
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE 134
+RY EIG++VVGR+ +QS+KW VD + + ++L L+++NLPGG R+R+ DE
Sbjct: 100 ARYTPEIGDLVVGRIVEVQSKKWRVDVGAPVLASLPLSAINLPGGILRKRTETDE 154
>gi|269860951|ref|XP_002650192.1| exosome complex exonuclease RRP4 [Enterocytozoon bieneusi H348]
gi|220066366|gb|EED43850.1| exosome complex exonuclease RRP4 [Enterocytozoon bieneusi H348]
Length = 222
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 105/189 (55%), Gaps = 5/189 (2%)
Query: 35 PGETV--EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAM-NSRYIGEIGEVVV 91
PGE V + Y G G ++ + ++V G+ +K+N ++ R + +Y +G++++
Sbjct: 7 PGEKVVENHERKYNYGVGISNINQCLCSTVFGIPQKLNTIIISRPLFYFKYTPNVGDIII 66
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + ++KW VD NS ES L L ++ LPG QRR+S DE MR + DL+ E+
Sbjct: 67 GRIIEIFNKKWKVDCNSYYESTLSLGAIFLPGDIQRRKSKDDETSMRCLYQLNDLVICEV 126
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+I+ +TL+ KY L +GIL VP L++++KS C A I+G NGYVW+
Sbjct: 127 QKITKNNMVTLNPYMDKYSSLEEGILFKVPIMLMKKNKSVIELAECVA--IIGSNGYVWI 184
Query: 212 SAIDENKSG 220
+ + G
Sbjct: 185 KTTNYDIVG 193
>gi|387595692|gb|EIJ93315.1| hypothetical protein NEPG_01657 [Nematocida parisii ERTm1]
Length = 209
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 110/193 (56%), Gaps = 9/193 (4%)
Query: 35 PGETVEYLEGYMTGHGTFP-----DDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
PGE +EY + + GHG + ++E +S+ G V++V++L+++ A Y +G+V
Sbjct: 6 PGEILEYTDDCLEGHGIYKEMSGENEEMFISSIAGTVKQVDRLITIEADTYWYTPGVGDV 65
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVG VTG+ +++W V+ NS ++ L L S+NL G QRR+ DE MM E+ GD++ A
Sbjct: 66 VVGWVTGIANKRWYVEINSRQDTVLLLNSINLIGNVQRRKGELDEIMMSEYYSIGDIVIA 125
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA--QVILGCNG 207
E+ ST + LHTRS KY K+ G+L+ + ++ + G ++++G NG
Sbjct: 126 EVQ--STGNKIQLHTRSSKYRKISFGVLIKLEGAVTDNRGQYHKQTVNGKEIEIVIGKNG 183
Query: 208 YVWVSAIDENKSG 220
YV V + D G
Sbjct: 184 YVVVHSDDHTAHG 196
>gi|387594107|gb|EIJ89131.1| hypothetical protein NEQG_00950 [Nematocida parisii ERTm3]
Length = 209
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 9/193 (4%)
Query: 35 PGETVEYLEGYMTGHGTFP-----DDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
PGE +EY + + GHG + ++E +S+ G V++V++L+++ A Y +G+V
Sbjct: 6 PGEILEYTDDCLEGHGIYKEMSGENEEMFISSIAGTVKQVDRLITIEADTYWYTPGVGDV 65
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
VVG V G+ +++W V+ NS ++ L L S+NL G QRR+ DE MM E+ GD++ A
Sbjct: 66 VVGWVIGIANKRWYVEINSRQDTVLLLNSINLIGNVQRRKGELDEIMMSEYYSIGDIVIA 125
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA--QVILGCNG 207
E+ ST + LHTRS KY K+ G+L+ + ++ + G ++++G NG
Sbjct: 126 EVQ--STGNKIQLHTRSSKYRKISFGVLIKLEGAVTDNRGQYHKQTVNGKEIEIVIGKNG 183
Query: 208 YVWVSAIDENKSG 220
YV V + D G
Sbjct: 184 YVVVHSDDHTAHG 196
>gi|385303806|gb|EIF47857.1| exosome complex exonuclease rrp4 [Dekkera bruxellensis AWRI1499]
Length = 157
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE + +M GHGT+ E+ ++V GV+ +VN L+SV RY E G+ VV
Sbjct: 42 IVVPGELITDDPXWMRGHGTYYLGEKTYSAVAGVILRVNXLLSVIPFKGRYNPETGDHVV 101
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLK 142
GR+ + +++W VD + ++ L L +VNLPGG RR+S DE MR F K
Sbjct: 102 GRIVDVTNKRWKVDVGAEHDAVLMLGAVNLPGGVLRRKSETDELQMRSFFK 152
>gi|67609946|ref|XP_667071.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|126654521|ref|XP_001388431.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|54658162|gb|EAL36838.1| hypothetical protein Chro.80348 [Cryptosporidium hominis]
gi|126117371|gb|EAZ51471.1| hypothetical protein cgd8_2980 [Cryptosporidium parvum Iowa II]
Length = 144
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 137 MREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA 196
M+ L EGD+I E+ ++ +EG LHTRS KYGKL G+++ VP LI+R H L
Sbjct: 1 MKSILDEGDVICTEVQRVQSEGICHLHTRSAKYGKLANGMVVKVPNKLIQRQAQHIVKLK 60
Query: 197 CGAQVILGCNGYVWVSAIDE-------NKSGGFIQNMEVVKLSDRETITRLNNVIKALA 248
G Q+ILG NGYVW+S E N S ++ E+V + R++I L +IK
Sbjct: 61 YGIQLILGLNGYVWISLPFEHSHTDTLNYSSSSVKP-EIVNSNIRKSIVMLAFIIKLFG 118
>gi|255637128|gb|ACU18895.1| unknown [Glycine max]
Length = 199
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 127 RRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIR 186
RRR+ DE MR +E D++ AE+ +G L L RS KYGKL +G LLTVPP L++
Sbjct: 4 RRRTAVDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVK 62
Query: 187 RSKSHFCNL-ACGAQVILGCNGYVWV 211
R K HF +L G +ILGCN ++WV
Sbjct: 63 RQKQHFHHLEEFGIDLILGCNRFIWV 88
>gi|124504299|gb|AAI28446.1| EXOSC2 protein [Homo sapiens]
Length = 88
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 216 ENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLL 275
E ++GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL + D+L
Sbjct: 8 EEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDIL 67
Query: 276 KPESKLDLVLCTAQKL 291
KPE ++V+ T Q+L
Sbjct: 68 KPEIMEEIVMETRQRL 83
>gi|357453831|ref|XP_003597196.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
gi|355486244|gb|AES67447.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
Length = 387
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 128 RRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR 187
RR+ DE MR +E D+I AE+ + L L RS KYGKL G LLTV P L++R
Sbjct: 207 RRTALDELNMRCIFEEEDVICAEVVRDFQHDGLYLQARSQKYGKLSSGQLLTVAPYLVKR 266
Query: 188 SKSHFCNLA-CGAQVILGCNGYVWV 211
HF +L G +ILGCNG++WV
Sbjct: 267 QNQHFHHLEHYGIDLILGCNGFIWV 291
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 73 VSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ 126
V VR++ SRY + G++V+GRV + +W +D N + + L+++N+P G Q
Sbjct: 42 VFVRSLLSRYKPKAGDIVIGRVIEVGQNRWRLDINCGQNAYMMLSAMNMPDGLQ 95
>gi|269986357|gb|EEZ92655.1| KH type 1 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 224
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 21/205 (10%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTG-HGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS 80
+I + F I+TPGE L G +GT+ ++E++ + G+V+ ++ +SV +
Sbjct: 1 MINVKNFD--IVTPGEL---LSDERNGRNGTYEENEKVYSKFLGMVQLSDRGISVSPLAG 55
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREF 140
Y + G+ +VG VT + S+ WVVD ++ + L + VN V++ E+ R +
Sbjct: 56 NYYPKEGDDIVGEVTEISSKYWVVDISAPFYTRLDIRDVNF--------RVEESELSR-Y 106
Query: 141 LKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL-- 195
+ GDL+ A + ++ + + R +YGKL ++ + P + R + NL
Sbjct: 107 INIGDLVYARVFRVYPNNAADISMRGTRYGKLDSKMITRIDPVKLPRLIGKEGAMINLIK 166
Query: 196 -ACGAQVILGCNGYVWVSAIDENKS 219
+++G NG VWV D+N++
Sbjct: 167 EETKCDLVVGQNGIVWVDGEDKNRA 191
>gi|424819351|ref|ZP_18244460.1| KH type 1 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|326422443|gb|EGD71842.1| KH type 1 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 224
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 21/205 (10%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMTG-HGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS 80
+I + F I+TPGE L G +GT+ ++E++ + G+V+ ++ +SV +
Sbjct: 1 MINVKNFD--IVTPGEL---LSDERNGRNGTYEENEKVYSKFLGMVQLSDRGISVSPLAG 55
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREF 140
Y + G+ +VG VT + S+ WVVD ++ + L + VN V++ E+ R +
Sbjct: 56 NYYPKEGDDIVGEVTEISSKYWVVDISAPFYTRLDIRDVNF--------RVEESELSR-Y 106
Query: 141 LKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL-- 195
+ GDL+ A + ++ + + R +YGKL ++ + P + R + NL
Sbjct: 107 INIGDLVYARVFRVYPNNAADISMRGTRYGKLESKMITRIDPVKLPRLIGKEGAMINLIK 166
Query: 196 -ACGAQVILGCNGYVWVSAIDENKS 219
+++G NG VWV D+N++
Sbjct: 167 EETKCDLVVGQNGIVWVDGEDKNRA 191
>gi|242399327|ref|YP_002994751.1| Probable exosome complex RNA-binding protein 1 [Thermococcus
sibiricus MM 739]
gi|242265720|gb|ACS90402.1| Probable exosome complex RNA-binding protein 1 [Thermococcus
sibiricus MM 739]
Length = 251
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 14/180 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ G GTF + + +SV G+V N VSV + YI E+G+ V+G++ ++ W+V
Sbjct: 23 FKNGRGTFKEGNRLYSSVVGLVRVSNDTVSVVPLEGPYIPEVGDTVIGKIVDVKFSNWIV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + ++ L + V E R ++ + +R+ GD+I A+I + + L T
Sbjct: 83 DIGAPYQAGLRVQDVI----EGRVDVLKTD--LRKIFDIGDIIYAKIKAYNEINQIDLIT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDE 216
+ + + G L G L+ + PS + R S + G ++I+G NG+VWVS E
Sbjct: 137 KGMPFNGGPLKGGQLVKITPSKVPRLIGKGGSMINMIKNLTGTRIIVGQNGWVWVSGRKE 196
>gi|288560610|ref|YP_003424096.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
ruminantium M1]
gi|288543320|gb|ADC47204.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
ruminantium M1]
Length = 491
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 21/213 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PGE + + Y +G GTF DD +I + + G+V N+ +SV + S+YI + G+VV+
Sbjct: 14 LVVPGELLAE-DDYYSGRGTFEDDGKICSKLLGLVSLRNKKISVIPLKSKYIPKKGDVVI 72
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ ++ W VD NS L + V G +++ E+ R F GD++ I
Sbjct: 73 GKIDDVRFSMWGVDINSPYSGILPASEVF---GREKK------ELSRVF-DIGDVLFLRI 122
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILGC 205
+ + L + GK G+++ + P+ + R K N+ G ++++G
Sbjct: 123 VDVDEVKKVKLGLKGRGMGKFRGGVIVDIAPTKVPRLIGKKGSMINMIKDKTGCKIVVGQ 182
Query: 206 NGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT 238
NG VWV ++ + ++N +KL +RE T
Sbjct: 183 NGLVWVKGNEDMEQ--IVKN--TIKLIEREAHT 211
>gi|124359809|gb|ABN06127.1| Nucleic acid-binding, OB-fold, putative [Medicago truncatula]
Length = 164
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 137 MREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL- 195
MR +E D+I AE+ + L L RS KYGKL G LLTV P L++R HF +L
Sbjct: 1 MRCIFEEEDVICAEVVRDFQHDGLYLQARSQKYGKLSSGQLLTVAPYLVKRQNQHFHHLE 60
Query: 196 ACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALA 248
G +ILGCNG++WV E + + E I R + ++AL+
Sbjct: 61 HYGIDLILGCNGFIWVGEHVEARDDMIEDQINQSDPQTSEYICRAADAVRALS 113
>gi|389852858|ref|YP_006355092.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. ST04]
gi|388250164|gb|AFK23017.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. ST04]
Length = 264
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 112/223 (50%), Gaps = 30/223 (13%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GTF + I ++V G+V+ + V + YI E+G+ V+G++ ++ WVV
Sbjct: 23 YKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MREFLKEGDLISAEIHQISTEG 158
D + + L + + DE++ +R+F GD+I A++ I+
Sbjct: 83 DIGAPYPANLKI------------QDFTDEKIDLIRTDLRKFFDIGDIIYAKVKAINEVN 130
Query: 159 SLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVW 210
++ L T+ + + G L G ++ + PS + R S + +++I+G NG++W
Sbjct: 131 NIDLTTKGMPFNGGPLRGGQIVKITPSKVPRVIGKGGSMINMIKKLTMSRIIVGQNGWIW 190
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRETITR-LNNVIKALAESKV 252
V++ ++ I+ ++K+ DRE+ TR L + IKAL S++
Sbjct: 191 VNSKNDALEKLAIE--AILKI-DRESHTRGLTDRIKALLLSRL 230
>gi|14520825|ref|NP_126300.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus abyssi GE5]
gi|29337011|sp|Q9V120.1|ECR1_PYRAB RecName: Full=Probable exosome complex RNA-binding protein 1
gi|5458041|emb|CAB49531.1| Predicted exosome subunit, RNA-binding protein rrp4 [Pyrococcus
abyssi GE5]
gi|380741367|tpe|CCE70001.1| TPA: exosome complex RNA-binding protein Rrp4 [Pyrococcus abyssi
GE5]
Length = 265
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 110/223 (49%), Gaps = 30/223 (13%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GTF + I ++V G+V+ + V + YI E+G+ V+G++ ++ WVV
Sbjct: 23 YKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MREFLKEGDLISAEIHQISTEG 158
D + + L + + DE++ +R+F GD+I A++ I+
Sbjct: 83 DIGAPYPANLKI------------QDFTDEKIDLLRTDLRKFFDIGDIIYAKVKAITEVN 130
Query: 159 SLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVW 210
++ L T+ + + G L G ++ + PS + R S + ++I+G NG++W
Sbjct: 131 NIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIW 190
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRETITR-LNNVIKALAESKV 252
VS ++ I+ ++K+ D+E+ TR L + IKAL S++
Sbjct: 191 VSGKNDALEKLAIE--AILKI-DKESHTRGLTDRIKALLLSRL 230
>gi|57641570|ref|YP_184048.1| exosome complex RNA-binding protein Rrp4 [Thermococcus kodakarensis
KOD1]
gi|73919275|sp|Q5JIR5.1|ECR1_PYRKO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|57159894|dbj|BAD85824.1| exosome subunit Rrp4p homolog, RNA-binding protein [Thermococcus
kodakarensis KOD1]
Length = 257
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ G GTF + I ++V G+VE ++ V + YI E+G+ V+G++ ++ W V
Sbjct: 23 FKNGRGTFREGNAIYSTVIGLVEIRGNVIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + +++L + E+R ++ + +R+ GD+I A++ + + L T
Sbjct: 83 DIGAPYQASLRVQDAV----EERIDLLKTD--LRKIFDIGDIIYAKVKAFNEVNQIDLTT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSA 213
+ + + G L G L+T+ PS + R S + G ++I+G NG+VWVS
Sbjct: 137 KGMPFKGGPLRGGQLVTITPSKVPRLIGKGGSMINMIKTLTGTRIIVGQNGWVWVSG 193
>gi|223477967|ref|YP_002582205.1| putative exosome complex RNA-binding protein 1 [Thermococcus sp.
AM4]
gi|214033193|gb|EEB74021.1| Probable exosome complex RNA-binding protein 1 [Thermococcus sp.
AM4]
Length = 254
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ G GTF + I ++V G+VE L+ V + YI E+G+ V+G++ ++ W V
Sbjct: 23 FKNGRGTFREGNRIYSTVVGLVEVRGDLIRVIPLEGPYIPEVGDNVLGKIVDVRFSNWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + ++ L + E+R ++ + +R+ GD+I A+I + + L T
Sbjct: 83 DIGAPYQANLRVQDAV----EERIDLLKTD--LRKIYDIGDIIYAKIKAYNEVNQIDLTT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSA 213
+ + + G L G L+T+ PS + R S + G ++I+G NG+VWVS
Sbjct: 137 KGMPFKGGPLRGGQLVTITPSKVPRVIGKGGSMINMIKKLTGTRIIVGQNGWVWVSG 193
>gi|240104094|ref|YP_002960403.1| exosome complex RNA-binding protein Rrp4 [Thermococcus
gammatolerans EJ3]
gi|239911648|gb|ACS34539.1| Exosome complex RNA-binding protein 1, Rrp4p-like protein (Rrp4p)
[Thermococcus gammatolerans EJ3]
Length = 254
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ G GTF + I ++V G+VE L+ V + YI E+G+ V+G++ ++ W V
Sbjct: 23 FKNGRGTFREGNRIYSTVVGLVEIRGDLIRVIPLEGPYIPEVGDNVLGKIVDVRFSNWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + ++ L + E+R ++ + +R+ GD+I A+I + + L T
Sbjct: 83 DIGAPYQANLRVQDAV----EERIDLLKTD--LRKIYDIGDIIYAKIKAYNEVNQIDLTT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSA 213
+ + + G L G L+T+ PS + R S + G ++I+G NG+VWVS
Sbjct: 137 KGMPFKGGPLRGGQLVTITPSKVPRVIGKGGSMINMIKRLTGTRIIVGQNGWVWVSG 193
>gi|332157780|ref|YP_004423059.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. NA2]
gi|331033243|gb|AEC51055.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. NA2]
Length = 268
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 34/225 (15%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GTF + I ++V G+V+ + V + YI E+G+ V+G+V ++ WVV
Sbjct: 23 YKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKVVDVKFSSWVV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MREFLKEGDLISAEIHQISTEG 158
D + + L + + DE++ +R+F GD+I A++ I+
Sbjct: 83 DIGAPYPANLKI------------QDFTDEKIDLLRTDLRKFFDIGDIIYAKVKAITEVN 130
Query: 159 SLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVW 210
++ L T+ + + G L G ++ + PS + R S + ++I+G NG++W
Sbjct: 131 NIDLTTKGMPFNGGPLRGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIW 190
Query: 211 VSAIDENKSGGFIQNM--EVVKLSDRETITR-LNNVIKALAESKV 252
++ +E +++ + E + DRE+ T+ L + IK L S++
Sbjct: 191 INGKNE-----YLEKLAIEAILKIDRESHTKGLTDRIKNLLLSRL 230
>gi|375082089|ref|ZP_09729159.1| exosome complex RNA-binding protein Rrp4 [Thermococcus litoralis
DSM 5473]
gi|374743302|gb|EHR79670.1| exosome complex RNA-binding protein Rrp4 [Thermococcus litoralis
DSM 5473]
Length = 251
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ G GTF + I ++V G+V N VSV + YI E+G+ V+G++ ++ WVV
Sbjct: 23 FKNGRGTFKEGNRIYSTVVGLVRISNDTVSVVPLEGPYIPEVGDSVIGKIVDVKFSNWVV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + ++ L + E + ++ + +R+ GD+I A++ + + L T
Sbjct: 83 DIGAPYQATLRVQDAV----EGKIDILKTD--LRKLFDIGDIIYAKVKAFNEINQIDLIT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDE 216
+ + + G L G L+ + PS + R S + ++I+G NG+VWVS +E
Sbjct: 137 KGMPFNGGPLKGGQLVKITPSKVPRLIGKGGSMINMIKNLTNTRIIVGQNGWVWVSGRNE 196
>gi|48477467|ref|YP_023173.1| exosome complex RNA-binding protein Rrp4 [Picrophilus torridus DSM
9790]
gi|74568056|sp|Q6L222.1|ECR1_PICTO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|48430115|gb|AAT42980.1| 3'->5' exoribonuclease [Picrophilus torridus DSM 9790]
Length = 230
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE ++ LEG +G + +++E + GVV+K ++ + + N Y+ I + V+
Sbjct: 6 IVYPGEKID-LEGQKPRNGLYEENDEYYSEYFGVVQKSDKFIDIVPFNGPYMPRINDKVI 64
Query: 92 GRVTGLQSQKWVVDTNSILESALHL--TSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
G+V + + W VD NS S +H+ T ++ G+ +R++L GD I A
Sbjct: 65 GKVIDVSATMWTVDINSPYFSLMHMNDTPWHVTSGD-----------LRKYLNVGDYIYA 113
Query: 150 EIHQIS--TEGSLTLHTRSLKYGKLGQGILLTVP--PSLIRRSKS--HFCNLACGAQVIL 203
++ ++ E L+L +L+ + G I + P P +I ++ + + ++I+
Sbjct: 114 KVSILNEIKESWLSLKDVNLRKLEEGSIIYIKAPKVPRVIGKAGNMINMIKSETNTKIIV 173
Query: 204 GCNGYVWVSAIDEN 217
G NG +W+ EN
Sbjct: 174 GQNGLIWIDGEPEN 187
>gi|147919676|ref|YP_686580.1| exosome complex RNA-binding protein Rrp4 [Methanocella arvoryzae
MRE50]
gi|110621976|emb|CAJ37254.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 226
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVD 105
+ HGT+ D ++ A+ G+V++ N + V ++ RYI G++V+G+VT + W+VD
Sbjct: 19 LASHGTYVQDGKVYAANFGLVDRRNS-IKVIPLSGRYIPARGDLVIGKVTDVTFSNWIVD 77
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI--STEGSLTLH 163
NS E LH + E R D+ M ++L EG+LI A+I + S + LTL
Sbjct: 78 INSPYEGLLHAS-------EYPERV--DQNNMTKYLHEGELIIAKISDVDPSMKVELTLR 128
Query: 164 TRSLKYGKLGQGILLT--VPPSLIRRSKSH----FCNLACGAQVILGCNGYVWVSAIDE 216
LK K G+ I ++ P +I R+ S +L C + +G NG +W+ D+
Sbjct: 129 EEHLKILKDGRVIEISHVKIPRVIGRNGSMIKMLMKDLDC--SIFVGQNGRIWLKGDDK 185
>gi|390960834|ref|YP_006424668.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. CL1]
gi|390519142|gb|AFL94874.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. CL1]
Length = 256
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ +G GTF + I ++V G+VE + V + YI E+G+ V+G++ ++ W V
Sbjct: 23 FKSGRGTFREGNRIYSTVVGLVEIRGDTIRVIPLEGPYIPEVGDNVIGKIVDVRFSNWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + +++L + E+R + + +R+ GD+I A+I + + L T
Sbjct: 83 DIGAPYQASLRVQDAV----EERIDLAKTD--LRKIFDIGDIIYAKIKAYNEVNQIDLTT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDE 216
+ + + G L G ++ + PS + R S + G ++I+G NG+VWVS E
Sbjct: 137 KGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTRIIVGQNGWVWVSGKKE 196
>gi|212223174|ref|YP_002306410.1| exosome complex RNA-binding protein Rrp4 [Thermococcus onnurineus
NA1]
gi|212008131|gb|ACJ15513.1| RNA-binding protein [Thermococcus onnurineus NA1]
Length = 256
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ +G GTF + I ++V G+VE + V + YI E+G+ V+G++ ++ W V
Sbjct: 23 FKSGRGTFREGNRIYSTVVGLVEIRGDAIRVIPLEGPYIPEVGDNVIGKIVDVKFSNWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + ++ L + E+R ++ + +R+ GD+I A+I + + L T
Sbjct: 83 DIGAPYQANLRVQDAV----EERIDVLKTD--LRKIFDIGDIIYAKIKAYNEINQIDLTT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDE 216
+ + + G L G ++ + PS + R S + G ++I+G NG+VWVS E
Sbjct: 137 KGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTRIIVGQNGWVWVSGKKE 196
>gi|341582109|ref|YP_004762601.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. 4557]
gi|340809767|gb|AEK72924.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. 4557]
Length = 256
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ G GTF + I ++V G+VE + V + YI E+G+ V+G++ ++ W V
Sbjct: 23 FKNGRGTFREGNRIYSTVVGLVEIRGDTIRVIPLEGPYIPEVGDNVIGKIVDVRFSNWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + ++ L + E+R + + +R GD+I A I + + L T
Sbjct: 83 DIGAPYQAGLRVQDAT----EERIDLAKTD--LRRIFDIGDIIYARIKAYNEINQIDLTT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDE 216
+ + + G L G ++ + PS + R S + G ++I+G NG+VWVS +E
Sbjct: 137 KGMPFRGGPLRGGQIVEITPSKVPRLIGKGGSMINLIKKLTGTRIIVGQNGWVWVSGKNE 196
>gi|337283873|ref|YP_004623347.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus yayanosii CH1]
gi|334899807|gb|AEH24075.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus yayanosii CH1]
Length = 257
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 26/186 (13%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ G GTF + I ++V G+V+ L+ V + YI E+G+ V+G+V ++ W V
Sbjct: 23 FKNGRGTFREGSRIYSTVIGLVDIKGNLIRVIPLEGPYIPEVGDNVIGKVVDVKFSSWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MREFLKEGDLISAEIHQISTEG 158
D + ++ L + + DE++ +++F GD+I A++ I+
Sbjct: 83 DIGAPYQATLRI------------QDHTDEKIDLIKTDLKKFFDIGDIIYAKVKAINEVN 130
Query: 159 SLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVW 210
++ L T+ + + G L G ++ + PS + R S + ++I+G NG+VW
Sbjct: 131 NIDLTTKGMPFNGGPLRGGQIVKITPSKVPRLIGKGGSMINMIKRLTMTRIIVGQNGWVW 190
Query: 211 VSAIDE 216
+S E
Sbjct: 191 ISGKKE 196
>gi|408382266|ref|ZP_11179811.1| exosome complex RNA-binding protein Rrp4 [Methanobacterium
formicicum DSM 3637]
gi|407814922|gb|EKF85544.1| exosome complex RNA-binding protein Rrp4 [Methanobacterium
formicicum DSM 3637]
Length = 247
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 32 ILTPGETVEYLEG-YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
I+ PGE + EG Y +G GTF +++++ +S+ G+V ++ +SV + S+YI + G+VV
Sbjct: 9 IVIPGEILA--EGDYHSGRGTFKEEDKVCSSLVGLVAVRDKKISVIPLQSKYIPKRGDVV 66
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
+G+V+ ++ W +D NS L V G+++R ++ R F GD++
Sbjct: 67 IGKVSDIRFSMWNLDINSPYSGILPAAEVF---GKEKR------DLNRAF-NVGDVLFLR 116
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILG 204
+ + + L + GK GIL+ + P+ + R K N+ +V++G
Sbjct: 117 VVDVDEVKKVKLGLKGRGLGKFRGGILINITPTKVPRLIGKKGSMINMIKDQTRCEVVVG 176
Query: 205 CNGYVWVSAIDE 216
NG VWV E
Sbjct: 177 QNGVVWVKGKPE 188
>gi|410721459|ref|ZP_11360794.1| RNA-binding protein Rrp4 [Methanobacterium sp. Maddingley MBC34]
gi|410598916|gb|EKQ53479.1| RNA-binding protein Rrp4 [Methanobacterium sp. Maddingley MBC34]
Length = 248
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 32 ILTPGETVEYLEG-YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV 90
I+ PGE + EG Y +G GTF +++++ +S+ G+V ++ +SV + S+YI + G+VV
Sbjct: 9 IVVPGEILA--EGDYHSGRGTFTEEDKVCSSLVGLVAVRDKKISVIPLQSKYIPKRGDVV 66
Query: 91 VGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
+G+V+ ++ W +D NS L V G+++R ++ R F GD++
Sbjct: 67 IGKVSDIRFSMWNLDINSPYSGILPAAEVF---GKEKR------DLNRAF-NVGDVLFLR 116
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILG 204
+ + + L + GK GIL+ + P+ + R K N+ +V++G
Sbjct: 117 VVDVDEVKKVKLGLKGRGLGKFRGGILINITPTKVPRLIGKKGSMINMIKDQTRCEVVVG 176
Query: 205 CNGYVWVSAIDE 216
NG VWV E
Sbjct: 177 QNGVVWVKGKPE 188
>gi|14591334|ref|NP_143412.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus horikoshii
OT3]
gi|29336583|sp|O59221.1|ECR1_PYRHO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|3257980|dbj|BAA30663.1| 265aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 265
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 30/223 (13%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GTF + I ++V G+V+ + V + YI E+G+ V+G++ ++ WVV
Sbjct: 23 YKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MREFLKEGDLISAEIHQISTEG 158
D A +L ++ + + DE++ +R+F GD+I ++ I+
Sbjct: 83 DI-----GAPYLANLKI-------QDFTDEKIDLLRTDLRKFFDIGDIIYGKVKAITEVN 130
Query: 159 SLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVW 210
++ L T+ + + G L G ++ + PS + R S + ++I+G NG++W
Sbjct: 131 NIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIW 190
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRETITR-LNNVIKALAESKV 252
V+ +E I+ ++K+ DRE+ T+ L + IK+L S++
Sbjct: 191 VNGKNEALEKLAIE--AILKI-DRESHTKGLTDRIKSLLLSRL 230
>gi|424811891|ref|ZP_18237131.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756113|gb|EGQ39696.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalinarum
sp. J07AB56]
Length = 227
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 20/211 (9%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+ PG+TV + G+G + D E++++ G+V VSVR N RYI + G++V+G
Sbjct: 11 VAPGDTVFEGDTAEAGNGVYEDGEKLRSRYAGIVRYQEGTVSVRPSNGRYIPQEGDIVIG 70
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
V ++ W+VD NS E + + G DE+ + E+ GD I ++
Sbjct: 71 EVKAVRYSSWMVDLNSPYEGMMKVD------GAVDEYIDLDEDELTEYYDVGDAIVVKVS 124
Query: 153 QISTEG---SLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL------ACGAQVIL 203
+S EG +LT+ R + L G + + PS + N+ +I
Sbjct: 125 SVS-EGFDVNLTMDDRRCR--TLESGRIEEISPSKVSALIGKGGNIIRELKEETDTSMIA 181
Query: 204 GCNGYVWVSAIDENKSGGFIQNMEVVKLSDR 234
G NG VW+ + K+ ++N V +++DR
Sbjct: 182 GQNGRVWIQGGEHVKAAEALKN--VGEVADR 210
>gi|333986694|ref|YP_004519301.1| exosome complex RNA-binding protein 1 [Methanobacterium sp. SWAN-1]
gi|333824838|gb|AEG17500.1| exosome complex RNA-binding protein 1 [Methanobacterium sp. SWAN-1]
Length = 275
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + E Y +G GTF ++ I +S+ G+V ++ +SV + S+YI + G+VV+
Sbjct: 9 IVVPGDVLAD-EEYHSGRGTFRENSNICSSLVGLVAIRDKKISVIPLQSKYIPKRGDVVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G VT ++ W +D NS L + V G+++R E+ R F GD++ +
Sbjct: 68 GEVTDIRFSMWNLDVNSPYSGFLPASDVF---GKEKR------ELSRTF-DVGDVLFLRV 117
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLA---CGAQVILGC 205
+ + L + GK GIL+ + P+ + R K N+ V++G
Sbjct: 118 VDVDEVKKVKLGLKGRGLGKFRGGILINITPTKVPRLIGKKGSMINMIKDETRCDVVVGQ 177
Query: 206 NGYVWVSA 213
NG VWV
Sbjct: 178 NGVVWVKG 185
>gi|315229926|ref|YP_004070362.1| exosome complex RNA-binding protein 1 [Thermococcus barophilus MP]
gi|315182954|gb|ADT83139.1| exosome complex RNA-binding protein 1 [Thermococcus barophilus MP]
Length = 255
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ G GTF + I ++V G+V+ N + V + YI E+G+ V+G++ ++ W V
Sbjct: 23 FKNGRGTFKEGNRIYSTVVGLVDIRNDFIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + ++ L + E++ ++ + +R+ GD+I A++ + + L T
Sbjct: 83 DIGAPYQATLRIQDAV----EEKIDLLKTD--LRKIFDIGDIIYAKVKAFNEVNQIDLTT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDE 216
+ + + G L G ++ + PS + R S + ++I+G NG+VWVS E
Sbjct: 137 KGMPFNGGPLKGGQIVKITPSKVPRLIGKGGSMINLIKKMTQTRIIVGQNGWVWVSGRKE 196
>gi|18977941|ref|NP_579298.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus DSM
3638]
gi|397652062|ref|YP_006492643.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus COM1]
gi|29336821|sp|Q8U0L8.1|ECR1_PYRFU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|18893711|gb|AAL81693.1| hypothetical protein PF1569 [Pyrococcus furiosus DSM 3638]
gi|393189653|gb|AFN04351.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus COM1]
Length = 264
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 108/230 (46%), Gaps = 44/230 (19%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GTF + I ++V G+V+ + V + YI E+G+ V+G++ ++ W V
Sbjct: 23 YKNGRGTFKEGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MREFLKEGDLISAEIHQISTEG 158
D S + L + + DE++ +R+F GD+I A++ I+
Sbjct: 83 DIGSPYSATLKI------------QDYTDEKIDLLRTDLRKFFDIGDIIYAKVKGINEVN 130
Query: 159 SLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVW 210
++ L T+ + + G L G ++ + S + R S + +++I+G NG++W
Sbjct: 131 NIELTTKGMPFNGGPLRGGQIIKITSSKVPRVIGKGGSMINMIKKLTQSRIIVGQNGWIW 190
Query: 211 VSAIDENKSGGFIQNMEVVKLS-------DRETITR-LNNVIKALAESKV 252
+S+ +N E+ KL+ +RE+ TR L + IK + SK+
Sbjct: 191 ISS----------KNPELEKLAIEAILKIERESHTRGLTDRIKNMLLSKL 230
>gi|290559126|gb|EFD92490.1| KH type 1 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 217
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 21/190 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + + G+GT+ ++ ++ + G+ + + + V + Y G+ ++
Sbjct: 9 IVTPGELLS--DEKNGGNGTYEEENKVYSKFLGMAQVSEKRIDVTPLTGNYYPSEGDDII 66
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPG--GEQRRRSVQDEEMMREFLKEGDLISA 149
G VT + S+ WVVD N+ + L + VN GE R +++ GDLI A
Sbjct: 67 GEVTEIASKYWVVDINAPFYTRLDVRDVNFRAELGELDR-----------YIEIGDLIYA 115
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVIL 203
+ +I + + R +YGKL + + + P + R S + +++
Sbjct: 116 RVFRIYPNNAADISMRGTRYGKLEPKLTMKIDPVKLPRLIGKEGSMINMIKDQTKCDILV 175
Query: 204 GCNGYVWVSA 213
G NG +W+
Sbjct: 176 GQNGIIWIDG 185
>gi|424819694|ref|ZP_18244761.1| KH type 1 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422490|gb|EGD71887.1| KH type 1 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 224
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 21/190 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE + + G+GT+ ++ ++ + G+ + + + V + Y G+ ++
Sbjct: 9 IVTPGELLS--DEKNGGNGTYEEENKVYSKFLGMAQVSEKRIDVTPLTGNYYPSEGDDII 66
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPG--GEQRRRSVQDEEMMREFLKEGDLISA 149
G VT + S+ WVVD N+ + L + VN GE R +++ GDLI A
Sbjct: 67 GEVTEIASKYWVVDINAPFYTRLDVRDVNFRAELGELDR-----------YIEIGDLIYA 115
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVIL 203
+ +I + + R +YGKL + + + P + R S + +++
Sbjct: 116 RVFRIYPNNAADISMRGTRYGKLEPKLTMKIDPVKLPRLIGKEGSMINMIKDQTKCDILV 175
Query: 204 GCNGYVWVSA 213
G NG +W+
Sbjct: 176 GQNGIIWIDG 185
>gi|449527509|ref|XP_004170753.1| PREDICTED: uncharacterized protein LOC101227941, partial [Cucumis
sativus]
Length = 176
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNG 207
AE+ + +G L L RS KYGKL +G LLTV P LI+R K HF +L G +ILGCNG
Sbjct: 3 AEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNG 61
Query: 208 YVWV 211
++W+
Sbjct: 62 FIWI 65
>gi|327400937|ref|YP_004341776.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
SNP6]
gi|327316445|gb|AEA47061.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
SNP6]
Length = 231
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIG 87
T I+ PG+ V G+GT+ ++ ++ A + G+++K + V + + RYI G
Sbjct: 1 MTRKIVMPGDLVS-TNPRAAGYGTYVENGKVYAKILGLLDKSDTGVRIIPLKGRYIPSTG 59
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
++V+G V + + WVVD S ++ L L L E R R V E L GD +
Sbjct: 60 DIVIGIVREVTANGWVVDIYSPYQAFLPL----LEYPETRNRKVN------EILDIGDAV 109
Query: 148 SAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQV 201
A++ I + +TL + + G ++ + P+ + R S G Q+
Sbjct: 110 IAKVLNIDPKMKVTLTMKDKVCRPVRVGRIVAINPARVPRVIGKKGSMIRLLKSELGVQI 169
Query: 202 ILGCNGYVWVSA 213
I+G NG +W++
Sbjct: 170 IVGQNGLIWLNG 181
>gi|409096214|ref|ZP_11216238.1| exosome complex RNA-binding protein Rrp4 [Thermococcus zilligii
AN1]
Length = 258
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 28 FTDP--ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
F P ++ PG T+ + G GTF + + ++V G+VE + V + YI E
Sbjct: 5 FVKPRELVVPG-TLLAQGAFQAGKGTFREGNRVYSTVVGLVEIRGDTIKVIPLEGPYIPE 63
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MRE 139
+G+ V+G++ ++ W VD + ++ L R + +E++ +R+
Sbjct: 64 VGDNVLGKIVDVKFSSWTVDIGAPYQATL------------RAQDAVEEKIDLLKTDLRK 111
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSH 191
GD+I A++ + L T+ + + G L G L+T+ S + R S +
Sbjct: 112 IFDIGDIIYAKVKAFDEVNQIDLTTKGMPFNGGPLRGGQLVTITSSKVPRVIGKGGSMIN 171
Query: 192 FCNLACGAQVILGCNGYVWVSAID 215
G ++I+G NG+VWVS +
Sbjct: 172 MIKKLTGTRIIVGQNGWVWVSGTN 195
>gi|222444526|ref|ZP_03607041.1| hypothetical protein METSMIALI_00138 [Methanobrevibacter smithii
DSM 2375]
gi|261350935|ref|ZP_05976352.1| putative exosome complex RNA-binding protein 1 [Methanobrevibacter
smithii DSM 2374]
gi|222434091|gb|EEE41256.1| KH domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860273|gb|EFC92571.1| putative exosome complex RNA-binding protein 1 [Methanobrevibacter
smithii DSM 2374]
Length = 298
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PGE + E Y +G GTF ++ +I +S+ G+V N+ + V + S+Y+ + G+VV+
Sbjct: 9 LVIPGEVLADDE-YYSGRGTFKENGKICSSLMGLVSLRNKKIRVIPLKSKYVPKKGDVVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ ++ W VD NS LP E R +++ + + GD++ +
Sbjct: 68 GKIKDVRFSMWDVDINSPYSGI-------LPAFEVFGR---EKKELNKVFDVGDVLFLRV 117
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILGC 205
+ + L + GK GI++ + P+ + R K N+ ++I+G
Sbjct: 118 VDVDEVKKVKLGLKGRGMGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCKIIVGQ 177
Query: 206 NGYVWVSA 213
NG VWV
Sbjct: 178 NGLVWVKG 185
>gi|148642303|ref|YP_001272816.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
smithii ATCC 35061]
gi|166919579|sp|A5UJS0.1|ECR1_METS3 RecName: Full=Probable exosome complex RNA-binding protein 1
gi|148551320|gb|ABQ86448.1| RNA-binding protein Rrp4 [Methanobrevibacter smithii ATCC 35061]
Length = 298
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PGE + E Y +G GTF ++ +I +S+ G+V N+ + V + S+Y+ + G+VV+
Sbjct: 9 LVIPGEVLADDE-YYSGRGTFKENGKICSSLMGLVSLRNKKIRVIPLKSKYVPKKGDVVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ ++ W VD NS LP E R +++ + + GD++ +
Sbjct: 68 GKIKDVRFSMWDVDINSPYSGI-------LPAFEVFGR---EKKELNKVFDVGDVLFLRV 117
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILGC 205
+ + L + GK GI++ + P+ + R K N+ ++I+G
Sbjct: 118 VDVDEVKKVKLGLKGRGMGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCKIIVGQ 177
Query: 206 NGYVWVSA 213
NG VWV
Sbjct: 178 NGLVWVKG 185
>gi|435852005|ref|YP_007313591.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Methanomethylovorans hollandica DSM 15978]
gi|433662635|gb|AGB50061.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Methanomethylovorans hollandica DSM 15978]
Length = 270
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
+G GT+ + ++ + + GV V +SV + +YI ++V+G V S W+ D
Sbjct: 19 SGSGTYVKEGKVYSLLYGVA-NVKNRISVIPFSGKYIPSRKDLVIGTVFETTSSNWIFDI 77
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRS 166
S + LH++ E RR + MMRE GD I + + L R
Sbjct: 78 GSPYDGLLHVS-------EYPRRV--ESSMMREIFNIGDCAILRIKDVDASMKIELTLRE 128
Query: 167 LKYGKLGQGILLTVPPSLIRRSKSHFCNLAC------GAQVILGCNGYVWVSAIDEN 217
K+ G LL VPP+ + R H ++ ++ +G NG +W++ DEN
Sbjct: 129 KGLRKIKGGRLLEVPPTKVPRVIGHNGSMVSMLKKETDCEIFVGQNGRIWINGKDEN 185
>gi|47157015|gb|AAT12380.1| hypothetical protein [Antonospora locustae]
Length = 103
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA-QVILGCNG 207
AE+ +I G++ LH R+ KY KL G+LL VP +L+ R+K+ C + CG +VI+G NG
Sbjct: 2 AEVQKIGKSGNILLHARNEKYKKLTYGVLLAVPIALVTRTKT--CFVVCGQIEVIIGMNG 59
Query: 208 YVWVSAIDENKSG 220
YV++S+ K
Sbjct: 60 YVFISSCSNCKDA 72
>gi|424814252|ref|ZP_18239430.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalina sp.
J07AB43]
gi|339757868|gb|EGQ43125.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalina sp.
J07AB43]
Length = 231
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + + G + ++ +I + G V+ + V V+ M+ RYI E G+VV+
Sbjct: 10 IVVPGDVITEEDNVKPNSGVYTEEGKIYSQHIGTVKYGSGNVRVQPMDGRYIPEEGDVVI 69
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQ-DEEMMREFLKEGDLISAE 150
VT + +W +D +S E L ++ E + V DE+ + +F GD + A+
Sbjct: 70 AEVTRVSYSRWNLDMDSPYEGTLDIS-------EASDQYVDLDEDDLTDFYDVGDAVVAK 122
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILG 204
+ +S + L + KL +G ++ + P + R + N VI+G
Sbjct: 123 VTSVSESMDVDLTMLDDRCRKLEEGRIINISPHKVPRVIGRQGTMVQQINEKTNCHVIVG 182
Query: 205 CNGYVWVSA 213
NG VW++
Sbjct: 183 QNGLVWING 191
>gi|402469900|gb|EJW04455.1| hypothetical protein EDEG_01325 [Edhazardia aedis USNM 41457]
Length = 365
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 122/308 (39%), Gaps = 93/308 (30%)
Query: 29 TDPILTPGETVEYLEGYMTGHGTF--PDDEE--IKASVGGVVEKVNQLVSVRAM-NSRYI 83
TD + ++Y G + G F PD E I +S+ G +L+++ + N +YI
Sbjct: 64 TDCLNKKNTDLQYNPGCIEGLNGFYNPDTSEQIIVSSIYGTPNLTQKLLTMHCIYNLKYI 123
Query: 84 GEIGEVVVGRVTGLQSQKW---------------VVDTNSILESALHLTSV--------- 119
IG+ ++GRVT L ++W VDT + ++ L+ T+V
Sbjct: 124 PHIGDTIIGRVTSLGDKRWFLSINCAKHGILLLDAVDTYDLNQNHLNKTNVIRNSVSLHH 183
Query: 120 --------NLPGGEQ----------------RRRSVQDEEMMREFLKEGDLISAEIHQIS 155
N+ + RR+ +D MR+ DL+ E+ +I+
Sbjct: 184 KGVHKDMQNIKNHKSLQNTIEHGPSKMIHVARRKLHEDAMEMRKIYDINDLVVCEVSKIT 243
Query: 156 TEGSLTLHTRSLKYG----------------------------------KLGQGILLTVP 181
G++++HTRS+ G KL G++L VP
Sbjct: 244 --GAISVHTRSIITGSSSQFYSGIGTNSYQGNSAMNVLSNTSGFISPNRKLLGGVVLLVP 301
Query: 182 PSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLN 241
PSLI + KS L +VIL NG VWV + D S ++ VK +E
Sbjct: 302 PSLIEKKKSQIV-LLKNVRVILALNGIVWVHSDDPKDSVSIVK---YVKKCRKEFKIIDE 357
Query: 242 NVIKALAE 249
+VIK+L
Sbjct: 358 DVIKSLCN 365
>gi|156937006|ref|YP_001434802.1| exosome complex RNA-binding protein Rrp4 [Ignicoccus hospitalis
KIN4/I]
gi|156565990|gb|ABU81395.1| ribosomal RNA-processing protein RRP4 [Ignicoccus hospitalis
KIN4/I]
Length = 239
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 12/168 (7%)
Query: 56 EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALH 115
+ + A+V G+ E N VS+ YI + G++V+G V W VD NS LH
Sbjct: 39 DAVYAAVAGMAEITNGTVSLIPFEGTYIPKPGDLVIGVVENFVVTHWQVDINSPYIGILH 98
Query: 116 LTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQG 175
++ NL G R ++ ++E+L GD I A++ L+ + G++ +G
Sbjct: 99 VS--NLLG----RPYNPAKDNLKEYLDIGDYIIAKVESFDRTKDPILNVQGKGLGRVVEG 152
Query: 176 ILLTVPPSLIRR---SKSHFCNLA---CGAQVILGCNGYVWVSAIDEN 217
++ + PS + R K N+ G ++I+G NG +W+ +++
Sbjct: 153 KIVEIKPSRVPRVIGKKKSMLNVIKGDTGCEIIVGANGRIWIKCPNKD 200
>gi|254168272|ref|ZP_04875118.1| KH domain protein [Aciduliprofundum boonei T469]
gi|197622781|gb|EDY35350.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 230
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE ++ E G+G F ++ ++ ++ G+V+ V+V ++ Y+ + G+ V+
Sbjct: 10 IVVPGEEID--EKGKPGNGVFVENGKLYSAYLGIVDTRAGYVNVIPLSGCYVPKKGDKVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ L WVVD N+ + LH+ V R D +L GD+I A++
Sbjct: 68 GKIIDLAPMNWVVDINAPYYAPLHVNDV------PWRVDFGD---TGRYLSIGDVILAKV 118
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGC 205
++ G + + + KL G ++ + P + R S G ++ +G
Sbjct: 119 SNVNELGQVWITMKEQGLRKLEGGHIIKISPFKVPRVIGKGGSMIQMLKDYTGCRIYVGQ 178
Query: 206 NGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT 238
NG +W+S E G I ++ +++ + E T
Sbjct: 179 NGVIWISGPPE----GIITVIKAIRMIENEAHT 207
>gi|329766297|ref|ZP_08257844.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393796025|ref|ZP_10379389.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137199|gb|EGG41488.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 226
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 20/207 (9%)
Query: 54 DDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESA 113
D +I A+ G+ E + + V + +YI +I ++V+G+V S W +D NS
Sbjct: 28 DGNKIIATSIGISEIYDDSIKVIPLTGKYIPKIDDLVIGKVISHTSLSWELDINSCYVGF 87
Query: 114 LHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI--STEGSLTLHTRSLKYGK 171
L V R S +E+ + LK GDL++A I + + +T+ R L GK
Sbjct: 88 LPAQDVF-----GRDFSAHADELTSK-LKSGDLVAARIANFDRTRDPLVTIADRDL--GK 139
Query: 172 LGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQN 225
+ G L+ + PS + R + +A GA V +G NG++ VS G ++
Sbjct: 140 IDSGTLVKISPSKVPRLIGKRGTMIQMIEMATGAAVTIGQNGWIVVSC---ETPEGLLKA 196
Query: 226 MEVVKLSDRET-ITRLNNVIKALAESK 251
+ +++ D + + L + +K + ESK
Sbjct: 197 KKAIQMVDEKAHVANLTDQVKEMLESK 223
>gi|289595861|ref|YP_003482557.1| K-like, type 1, subgroup [Aciduliprofundum boonei T469]
gi|289533648|gb|ADD07995.1| K-like, type 1, subgroup [Aciduliprofundum boonei T469]
Length = 230
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE ++ E G+G F ++ ++ ++ G+V+ V+V ++ Y+ + G+ V+
Sbjct: 10 IVVPGEEID--EKGKPGNGVFVENGKLYSAYLGIVDIRAGYVNVIPLSGCYVPKKGDKVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ L WVVD N+ + LH+ V R D +L GD+I A++
Sbjct: 68 GKIIDLAPMNWVVDINAPYYAPLHVNDV------PWRVDFGD---TGRYLSIGDVILAKV 118
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGC 205
++ G + + + KL G ++ + P + R S G ++ +G
Sbjct: 119 SNVNELGQVWITMKEQGLRKLEGGHIIKISPFKVPRVIGKGGSMIQMLKDYTGCRIYVGQ 178
Query: 206 NGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT 238
NG +W+S E G I ++ +++ + E T
Sbjct: 179 NGVIWISGPPE----GIITVIKAIRMIENEAHT 207
>gi|167389161|ref|XP_001733446.1| rrp4 [Entamoeba dispar SAW760]
gi|165897731|gb|EDR24809.1| rrp4, putative [Entamoeba dispar SAW760]
Length = 116
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+TPG+ + Y EG + G+G +D E + V G VE++N+LV V + SRY G +G VVVG
Sbjct: 12 VTPGDEIFYEEGCIPGNGIRIEDNEFISCVHGTVERINKLVCVNPIRSRYCGNVGYVVVG 71
Query: 93 RVTGLQSQKW 102
R+ + W
Sbjct: 72 RIVSVGVGFW 81
>gi|15678711|ref|NP_275827.1| exosome complex RNA-binding protein Rrp4 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336574|sp|O26780.1|ECR1_METTH RecName: Full=Probable exosome complex RNA-binding protein 1
gi|2621769|gb|AAB85189.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 311
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E Y G GTF +D I +S G+V N+ ++V + S+YI + G+VV+
Sbjct: 9 LVVPGQVLAENE-YFPGRGTFKEDNRICSSFVGLVSVRNKKINVIPLQSKYIPKRGDVVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRR-RSVQDEEMMREFLKEGDLISAE 150
G +T ++ W +D NS L + V G ++R SV D + + L L+
Sbjct: 68 GEITDIRFSMWGLDINSPYTGLLPASEVF--GKDKRELESVFD---IVDVL----LLRVV 118
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLA---CGAQVILG 204
+ L L R L GK GIL+ + P+ + R + N+ +++G
Sbjct: 119 DVDEVKKVKLGLKGRGL--GKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVG 176
Query: 205 CNGYVWVSA 213
NG VW+
Sbjct: 177 QNGVVWIKG 185
>gi|304314831|ref|YP_003849978.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588290|gb|ADL58665.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 287
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 17/188 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + + Y G GTF + ++I +S G+V N+ ++V + S+YI + G+VV+
Sbjct: 9 LVVPGQVLAEND-YYPGRGTFKEGKKICSSFVGLVSVRNKKINVIPLQSKYIPKRGDVVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G +T ++ W +D NS L + V G+++R + GD++ +
Sbjct: 68 GEITDIRFSMWGLDINSPYSGLLPASEVF---GKEKRE-------LENVFDIGDVLLLRV 117
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLA---CGAQVILGC 205
+ + L + GK GIL+ + P+ + R + N+ +++G
Sbjct: 118 VDVDEVKKVKLGLKGRGLGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQ 177
Query: 206 NGYVWVSA 213
NG VW+
Sbjct: 178 NGVVWIKG 185
>gi|432328764|ref|YP_007246908.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Aciduliprofundum sp. MAR08-339]
gi|432135473|gb|AGB04742.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Aciduliprofundum sp. MAR08-339]
Length = 230
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE ++ E G+G F ++ ++ ++ G+V+ V+V ++ YI + G+ V+
Sbjct: 10 IVVPGEEID--ENGKPGNGVFVENGKMYSAYLGIVDLRAGYVNVIPLSGCYIPKKGDKVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ L WVVD N+ + LH+ V R D +L GD++ A++
Sbjct: 68 GKIIDLAPMNWVVDINAPYYAPLHVNDV------PWRVDFGD---TGRYLSIGDVVLAKV 118
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGC 205
++ G + + + KL G ++ + P + R S G ++ +G
Sbjct: 119 SNVNELGQVWITLKEPGLRKLEGGHIIKISPFKVPRVIGKGGSMIQMLKEYTGCRIYVGQ 178
Query: 206 NGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT 238
NG +W+S E G + ++ +++ + E T
Sbjct: 179 NGVIWISGSPE----GIVTVIKAIRMIESEAHT 207
>gi|254169371|ref|ZP_04876200.1| KH domain protein [Aciduliprofundum boonei T469]
gi|197621690|gb|EDY34276.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 203
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE ++ E G+G F ++ ++ ++ G+V+ V+V ++ Y+ + G+ V+
Sbjct: 10 IVVPGEEID--EKGKPGNGVFVENGKLYSAYLGIVDIRAGYVNVIPLSGCYVPKKGDKVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ L WVVD N+ + LH+ V R D +L GD+I A++
Sbjct: 68 GKIIDLAPMNWVVDINAPYYAPLHVNDV------PWRVDFGDTG---RYLSIGDVILAKV 118
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGC 205
++ G + + + KL G ++ + P + R S G ++ +G
Sbjct: 119 SNVNELGQVWITMKEQGLRKLEGGHIIKISPFKVPRVIGKGGSMIQMLKDYTGCRIYVGQ 178
Query: 206 NGYVWVSAIDE 216
NG +W+S E
Sbjct: 179 NGVIWISGPPE 189
>gi|257076443|ref|ZP_05570804.1| exosome complex RNA-binding protein Rrp4 [Ferroplasma acidarmanus
fer1]
Length = 222
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 28/220 (12%)
Query: 29 TDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
T I+ PG+ +E E +G + + E + GV+++ + + V NS Y+ +
Sbjct: 3 TKKIVYPGDKIEIAE-LKPRNGMYEYNSEFFSEYFGVIQESEKFIDVAPFNSPYLPRAND 61
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHL--TSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
++G++ + W VD NS S LH+ T ++ G+ R +L GD
Sbjct: 62 KIIGKIMDIGPTMWTVDINSPYYSLLHMNDTPWHVSSGDLER-----------YLNVGDY 110
Query: 147 ISAEIHQIS--TEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL------ACG 198
I A I + E ++L ++ KL G +++V P + R N+
Sbjct: 111 IYARISVSNEIKESWISLRDNGMR--KLESGRIISVKPPKVPRVIGRGGNMINIIKNYTD 168
Query: 199 AQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT 238
++I+G NG++W+ +N + ++ ++L ++E T
Sbjct: 169 TKIIVGQNGFIWLDGNVDNVK----KAIDAIRLVEKEAHT 204
>gi|405968050|gb|EKC33153.1| Exosome complex exonuclease RRP4 [Crassostrea gigas]
Length = 85
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 227 EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLC 286
E V+ SDRE + RL + ++ LA K+ L+DTS+ Y YE SL + D+LKPE L+++
Sbjct: 16 EPVQRSDREVVARLRHCVQLLAAQKMQLYDTSVLYTYEASLNFKIKDILKPEIGLEILEQ 75
Query: 287 TAQKLQTLG 295
T +L+ G
Sbjct: 76 TQHRLEIEG 84
>gi|145592133|ref|YP_001154135.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum arsenaticum
DSM 13514]
gi|379003149|ref|YP_005258821.1| RNA-binding protein Rrp4 and related proteins (containing S1 domain
and KH domain) [Pyrobaculum oguniense TE7]
gi|145283901|gb|ABP51483.1| ribosomal RNA-processing protein RRP4 [Pyrobaculum arsenaticum DSM
13514]
gi|375158602|gb|AFA38214.1| RNA-binding protein Rrp4 and related proteins (containing S1 domain
and KH domain) [Pyrobaculum oguniense TE7]
Length = 232
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 25/224 (11%)
Query: 28 FTDP--ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
F P ++ PG+ + + + G + D+ ++ V G+VE V + + Y +
Sbjct: 3 FVTPRQLIFPGDVIATADKKVEGP-VYLDNGRYRSLVVGLVEFREDSVVIVPLEGTYRPK 61
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEG 144
G+VVVG VT + + W VD S + + LP E + V E + FL G
Sbjct: 62 KGDVVVGYVTDVLATGWEVDVRSFMPAY-------LPVSEALHKHVDLETTPLTTFLNVG 114
Query: 145 DLISAEIHQI--STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCN--LAC 197
D+I A++ + + E + L R K GK+ G ++ + P I R K N L
Sbjct: 115 DVIVAKVKDVDLTDEYPIVLTLREEKVGKVESGTVVDIAPVKIPRVIGKKGTMLNTLLEL 174
Query: 198 GAQVILGCNGYVWVSAIDENKS---GGFIQNME----VVKLSDR 234
G +++G NG +W+ D I+ +E V+ L+DR
Sbjct: 175 GCDIVVGQNGRIWIKCGDPRDEVFLASLIRKIELESHVMGLTDR 218
>gi|218884636|ref|YP_002429018.1| exosome complex RNA-binding protein Rrp4 [Desulfurococcus
kamchatkensis 1221n]
gi|218766252|gb|ACL11651.1| exosome complex RNA-binding protein Rrp4 [Desulfurococcus
kamchatkensis 1221n]
Length = 239
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 23/235 (9%)
Query: 32 ILTPGETVEYLE-GYMTGH-GTFPD------DEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
++ PG+ + LE G ++ +PD D ++ + V G+V ++ ++V + S Y
Sbjct: 10 LVRPGDCLAILEEGIISNEIKRYPDKHIYVLDNKVYSDVLGIVYIEDKDINVIPLESVYY 69
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
+ V+G V + W +D + ++ L PG + +R +L
Sbjct: 70 PRKDDTVIGIVDSIGVTSWSIDIRAPYKAIL-------PGSDVIEGFNPITHNLRNYLDT 122
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---AC 197
GDLI A+I L T+ GK+ +G+++ + PS + R K NL
Sbjct: 123 GDLILAKIAIFDRTRDPMLTTKGKGLGKILEGVVVEIKPSKVARLVGKKGSMYNLLSSKS 182
Query: 198 GAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
G + + NGYVW+ DE + I+ + +++L + I L ++ ESK+
Sbjct: 183 GCDITIAQNGYVWLKCKDEYVTKVLIEAIRLIEL--KAHIRGLTEEVRVFLESKL 235
>gi|296243061|ref|YP_003650548.1| ribosomal RNA-processing protein RRP4 [Thermosphaera aggregans DSM
11486]
gi|380876881|sp|D5U396.1|ECR1_THEAM RecName: Full=Probable exosome complex RNA-binding protein 1
gi|296095645|gb|ADG91596.1| ribosomal RNA-processing protein RRP4 [Thermosphaera aggregans DSM
11486]
Length = 247
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 21/215 (9%)
Query: 32 ILTPGETVEYLE--GYMTGHGTFPD------DEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
++ PG+ + Y+E G + PD D +I + + GVV + + V + YI
Sbjct: 12 LVRPGDILAYIEEAGEVVKFKKIPDKHVYIFDNKIISDLVGVVNVSGEDIQVIPLEGVYI 71
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
++V+G V + W +D S L+ + V E + + +R +L
Sbjct: 72 PRKDDLVIGIVENVGVTAWTLDIRSPYPGVLNASEVI----EGFNPLIHN---LRNYLDT 124
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---AC 197
GD + I + + GK+ +G+++ V PS I R + NL
Sbjct: 125 GDFVIGRIALFDRTRDPVITVKGKGLGKITEGVVVDVKPSKIPRLIGKRGSMYNLLTSMS 184
Query: 198 GAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLS 232
G ++ + NG+VW+ DEN++ IQ +++++L
Sbjct: 185 GCEITIAQNGFVWLKCHDENRAKVLIQAIKLIELK 219
>gi|126459547|ref|YP_001055825.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum calidifontis
JCM 11548]
gi|126249268|gb|ABO08359.1| ribosomal RNA-processing protein RRP4 [Pyrobaculum calidifontis JCM
11548]
Length = 235
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 23/218 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ V + + G + D+ +I+++V G+VE +V + ++ Y + G++V+
Sbjct: 9 LIFPGDLVATADSRVEGP-VYVDNGKIRSAVVGLVEFREDVVVIVPLDGVYKPKKGDLVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEGDLISAE 150
G VT + + W VD + + + LP E + V E + FL GD+I A+
Sbjct: 68 GYVTDVLATGWEVDVRTFMPA-------YLPVSEALHKHVDLETTPLTTFLNIGDVIVAK 120
Query: 151 IHQI--STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR----SKSHFCNLA-CGAQVIL 203
+ + + E + L + + GK+ G ++ + P + R S LA G +++
Sbjct: 121 VKDVDLTDEYPVVLTLKEERVGKVESGTVVEIAPVKVPRVVGKKGSMLAVLAEVGCDIVV 180
Query: 204 GCNGYVWV---SAIDENKSGGFIQNME----VVKLSDR 234
G NG +WV S DE I+ +E V+ L+DR
Sbjct: 181 GQNGRIWVKCKSPRDEVFLTSLIKKIEAESHVMGLTDR 218
>gi|119872349|ref|YP_930356.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum islandicum
DSM 4184]
gi|119673757|gb|ABL88013.1| ribosomal RNA-processing protein RRP4 [Pyrobaculum islandicum DSM
4184]
Length = 231
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ V E + G + D+ + ++ V G+VE +V + + Y + G++VV
Sbjct: 9 LVFPGDVVATAESRVEGP-VYLDNGKYRSLVVGLVEFREDVVVIVPLEGTYRPKKGDLVV 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEGDLISAE 150
G VT + + W VD S + + LP E + V E + FL GD+I A+
Sbjct: 68 GYVTDVLATGWEVDVRSFMPAY-------LPVSEALHKHVDLETTPLTTFLNIGDVIVAK 120
Query: 151 IHQI--STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCN--LACGAQVIL 203
+ + + E + L + K GK+ +G ++ + P + R K N + G +I+
Sbjct: 121 VKDVDLTDEYPIILTLKEEKVGKVERGTVIEISPVKVPRVIGKKGSMLNTLMELGCDIIV 180
Query: 204 GCNGYVWVSAID 215
G NG +W+ D
Sbjct: 181 GQNGRIWIRCRD 192
>gi|336477104|ref|YP_004616245.1| K-like, type 1, subgroup [Methanosalsum zhilinae DSM 4017]
gi|335930485|gb|AEH61026.1| K-like, type 1, subgroup [Methanosalsum zhilinae DSM 4017]
Length = 257
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 21/194 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE + E G GT+ + ++ +S+ GV+ N+ V V + +YI + V+
Sbjct: 5 IVIPGELLSENE-QNAGLGTYVKEGKVYSSLYGVLNIKNK-VDVIPFSGKYIPRAKDYVI 62
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G V + S W D + LH++ +R S Q M + L GD +
Sbjct: 63 GTVVDITSSNWFFDVRAPYTGMLHVSEY-----PKRVESSQ----MSDLLDVGDSAILRV 113
Query: 152 HQI--STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLAC------GAQVIL 203
+ S + LTL R LK K+G+ ++ +PPS + R H ++ ++ +
Sbjct: 114 KDVDQSMKVELTLRERGLKRIKIGR--VIEIPPSKVPRIIGHGGSMVSMLKKETKCEIFV 171
Query: 204 GCNGYVWVSAIDEN 217
G NG +W++ +EN
Sbjct: 172 GQNGRIWINGPEEN 185
>gi|119719495|ref|YP_919990.1| exosome complex RNA-binding protein Rrp4 [Thermofilum pendens Hrk
5]
gi|380876882|sp|A1RXQ7.1|ECR1_THEPD RecName: Full=Probable exosome complex RNA-binding protein 1
gi|119524615|gb|ABL77987.1| ribosomal RNA-processing protein RRP4 [Thermofilum pendens Hrk 5]
Length = 237
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 16/237 (6%)
Query: 23 IEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVV--EKVNQLVSVRAMNS 80
+ IH I+ PGE V + F + + V GVV ++ N++V V +
Sbjct: 6 VTIHVKDRQIVAPGEFVGEQGRFRVEGQVFRVGRKYYSKVLGVVTVDEENRVVKVIPLKG 65
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREF 140
+Y G +VVG+V + W VD NS + L ++ V R ++ E+ R
Sbjct: 66 KYFPVEGHIVVGKVVDIGFTSWEVDINSPYVAVLPVSEVT-----SRPVTISRNELSR-I 119
Query: 141 LKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLAC--- 197
L GDLI A+I L + + GK+ +G L+ +PP + R ++
Sbjct: 120 LDVGDLILAKIVSFDLSKDPVLTIKESRLGKIPRGTLVEIPPQKVPRVIGRRGSMVSMIE 179
Query: 198 ---GAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESK 251
G ++I+G NG + V D + I + V K+ T L + IK E +
Sbjct: 180 DLLGVKLIVGQNGRIVVVGDDPQRVE--IAVLAVRKIEAEAHTTGLTDRIKQFIEER 234
>gi|297527573|ref|YP_003669597.1| K-like, type 1, subgroup [Staphylothermus hellenicus DSM 12710]
gi|297256489|gb|ADI32698.1| K-like, type 1, subgroup [Staphylothermus hellenicus DSM 12710]
Length = 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 92/212 (43%), Gaps = 20/212 (9%)
Query: 32 ILTPGETVEYLEG-------YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
I+ PG+ + +E Y+ + + I + V G+V ++ VSV + Y
Sbjct: 12 IVRPGDILAIIENSGEATPKYLPEKHVYIAENRIYSDVLGIVSITDKTVSVIPLEGVYFP 71
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
+ ++V+G VTG+ W++D + ++ L+ G E +R++L G
Sbjct: 72 KKDDLVIGLVTGVGITNWIIDIRAPYKAILN-------GSEVIEGFNPIIHNLRDYLDIG 124
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACG 198
+ I A+I L + GK+ +G ++ V PS + R K NL G
Sbjct: 125 EYILAKISVFDRTRDPILTIKGKGLGKITEGTVIEVKPSRVPRIIGKKGSMLNLLTSKTG 184
Query: 199 AQVILGCNGYVWVSAIDENKSGGFIQNMEVVK 230
+++ NG +W D ++ IQ +++++
Sbjct: 185 CNIVVAQNGMIWARCPDNHRLNILIQALKIIE 216
>gi|407464318|ref|YP_006775200.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
sp. AR2]
gi|407047506|gb|AFS82258.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
sp. AR2]
Length = 227
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 18/204 (8%)
Query: 56 EEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALH 115
++I ++ G+ E + V V + +YI +I ++V+G+V S W +D NS L
Sbjct: 30 DKIISTTIGISEIYDDSVKVIPLTGKYIPKINDLVIGKVISHSSLSWELDINSCYVGFLP 89
Query: 116 LTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI--STEGSLTLHTRSLKYGKLG 173
V R S +E+ + LK GDL++A I + + +T+ R L GK+
Sbjct: 90 AQDVF-----GRDFSAHADELTSK-LKSGDLVAARIANFDRTRDPLVTISDRDL--GKID 141
Query: 174 QGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNME 227
G L+ + PS + R S +A A V +G NG+V VS E G
Sbjct: 142 SGDLVKISPSKVPRLIGKRGSMIQMIEMATNAAVTIGQNGWVVVSC--ETPEGLLKAKKA 199
Query: 228 VVKLSDRETITRLNNVIKALAESK 251
+ ++++ + L + +K + E K
Sbjct: 200 IEMINEKAHVANLTDQVKEMLEIK 223
>gi|374724590|gb|EHR76670.1| exosome complex RNA-binding protein Rrp4 [uncultured marine group
II euryarchaeote]
Length = 243
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 18/195 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPG + + G G G ++ I A+ G ++ N VSV +NS Y+ G+++V
Sbjct: 24 LVTPGMAIGPVAGKRIGSGAIAQNDTIIATRLGWTKEFNNTVSVDPINSAYMPRSGDLIV 83
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
V +++ W ++ N + L ++ + R+ + GD++ A +
Sbjct: 84 AVVAEVRNNLWFMNINGPFQGLLPMSLAPWK---------VEFGAARQHMGIGDVVLARV 134
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKS------HFCNLACGAQVILGC 205
++ ++ L + + +L QG ++ VP + I R + A +++I+G
Sbjct: 135 QEVDECHNVVLTMKGVGLRRLNQGTIVNVPINHIDRLRGEGNATVQRLRDAADSRIIIGE 194
Query: 206 NGYVWVSAIDENKSG 220
NG VW ID N G
Sbjct: 195 NGRVW---IDGNAEG 206
>gi|312137047|ref|YP_004004384.1| ribosomal RNA-processing protein rrp4 [Methanothermus fervidus DSM
2088]
gi|380876879|sp|E3GZ90.1|ECR1_METFV RecName: Full=Probable exosome complex RNA-binding protein 1
gi|311224766|gb|ADP77622.1| ribosomal RNA-processing protein RRP4 [Methanothermus fervidus DSM
2088]
Length = 222
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE + + Y+ G GTF ++++I +SV G+V + + V + +YI + + V+
Sbjct: 9 IVVPGEKLAGND-YIAGRGTFIEEDKIYSSVVGLVSIKGKRIEVIPLQGKYIPKKNDSVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G+V ++ +W+VD S + L ++ V G ++ + E GD + +I
Sbjct: 68 GKVVDVKFARWIVDIRSPYSAILPVSEVIDKG----------KKNLEEIFGIGDTLFLKI 117
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGC 205
++ + L KL G L + PS + R S +++LG
Sbjct: 118 IEVDEVKKVKLGLHEGGPIKLEGGTLAYITPSKVPRVIGRKGSMIKMLKKLTNCEILLGQ 177
Query: 206 NGYVWVSA 213
NG +WV
Sbjct: 178 NGVIWVKG 185
>gi|84490038|ref|YP_448270.1| exosome complex RNA-binding protein Rrp4 [Methanosphaera stadtmanae
DSM 3091]
gi|121725485|sp|Q2NEX6.1|ECR1_METST RecName: Full=Probable exosome complex RNA-binding protein 1
gi|84373357|gb|ABC57627.1| putative exosome complex, RNA-binding subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 222
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GT+ ++ +I +S+ G+V ++ + V + Y G++V+GRVTG W +
Sbjct: 21 YKLGRGTYKENGKIYSSITGLVYFESEQIKVIPLKDTYSPNYGDLVIGRVTGSSYSSWSI 80
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D NS L T + + ++M+ + D EI+++ LTL +
Sbjct: 81 DINSTYHGFLPTTELYDKNEPNINNIINIKDMLLLRVANVD----EINRV----KLTLRS 132
Query: 165 RSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQ------VILGCNGYVWVSAI 214
R L GK QG ++ V I L Q VI+G NG +W++ +
Sbjct: 133 RGL--GKFNQGTIIKVKQPTIHFLSEENAFLTTMIQEYTYTDVIIGKNGLIWINGL 186
>gi|386876615|ref|ZP_10118714.1| KH domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386805577|gb|EIJ65097.1| KH domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 226
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 18/196 (9%)
Query: 64 GVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPG 123
G+ E + V V + +YI +I ++V+G+V S W +D NS L V
Sbjct: 38 GISEIYDDSVKVIPLTGKYIPKINDLVIGKVISHTSLSWELDINSCYVGFLPAQDVF--- 94
Query: 124 GEQRRRSVQDEEMMREFLKEGDLISAEIHQI--STEGSLTLHTRSLKYGKLGQGILLTVP 181
R S +E+ + LK GDL++A I + + +T+ R L GK+ G L+ +
Sbjct: 95 --GRDFSAHADELATK-LKSGDLVAARIANFDRTRDPLVTISDRDL--GKIDSGDLIKIS 149
Query: 182 PSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRE 235
PS + R + +A A + +G NG+V VS E+ G + ++++
Sbjct: 150 PSKVPRLIGKRGTMIQMIEMATDAAITIGQNGWVVVSC--ESPEGLLKAKKAIEMVNEKA 207
Query: 236 TITRLNNVIKALAESK 251
+ L + +K + ESK
Sbjct: 208 HVANLTDQVKEMLESK 223
>gi|386002839|ref|YP_005921138.1| Exosome complex RNA-binding protein RRP4 [Methanosaeta harundinacea
6Ac]
gi|357210895|gb|AET65515.1| Exosome complex RNA-binding protein RRP4 [Methanosaeta harundinacea
6Ac]
Length = 232
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 87/198 (43%), Gaps = 16/198 (8%)
Query: 26 HEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
H ++ PG+ + + +G GT+ D ++++ + G+ V V + +Y+
Sbjct: 9 HNNDRNVVVPGDLLSD-DPKASGEGTYVKDGKVRSLLYGMASSYKDKVRVIPLAGKYVPA 67
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
G+ V+G V + W+V+ NS E LH++ LP R ++ EM + +L+ G
Sbjct: 68 PGDTVIGTVQDIVFSNWIVNINSPYEGLLHISE--LP------RKIEMNEMSK-YLRIGS 118
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGA 199
+ + + + + L + G L +G + + P+ + R S +
Sbjct: 119 SVMTRVKDVDSTMKVELTMNDRRLGILTRGRVAEISPTRVPRLIGKGGSMINMLKKELNC 178
Query: 200 QVILGCNGYVWVSAIDEN 217
+ +G NG +WV D++
Sbjct: 179 NLFVGQNGRIWVDGNDDD 196
>gi|118576720|ref|YP_876463.1| exosome complex RNA-binding protein [Cenarchaeum symbiosum A]
gi|118195241|gb|ABK78159.1| exosome complex RNA-binding protein [Cenarchaeum symbiosum A]
Length = 225
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 18/215 (8%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y T + I A+V GV E + VSV + Y ++G++V+G+VT S W V
Sbjct: 18 YRPEQNTILEGRNIVATVVGVSEIADDAVSVIPLTGMYYPKVGDLVIGKVTSHSSLAWEV 77
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI--STEGSLTL 162
+ NS L + V R Q +E+ + K G+L++A + + + +T+
Sbjct: 78 EINSCYVGFLPASDVF-----GRGFDAQGDELSSKLAK-GELVAARVANFDRTRDPLVTV 131
Query: 163 HTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDE 216
R L GK+ G L+T+ PS + R + A GA V +G NG V VS E
Sbjct: 132 AERDL--GKIDTGDLVTISPSKVARLIGKRGAMIETIEKATGATVTIGQNGRVVVSC--E 187
Query: 217 NKSGGFIQNMEVVKLSDRETITRLNNVIKALAESK 251
+ G + + ++ ++ L + ++++ ES+
Sbjct: 188 SPDGLLKAKKAIQMVEEQAHMSNLTDRVRSMLESR 222
>gi|16082285|ref|NP_394746.1| exosome complex RNA-binding protein Rrp4 [Thermoplasma acidophilum
DSM 1728]
gi|29336950|sp|Q9HIP3.1|ECR1_THEAC RecName: Full=Probable exosome complex RNA-binding protein 1
gi|10640636|emb|CAC12414.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 236
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 29/233 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ +E ++G M D + G ++ +Q V V + +YI G+ V+
Sbjct: 10 IVLPGDPIE-VQGKMRNGVYRGQDNRYYSEYFGTLQVNDQFVDVVPFSGQYIPRKGDKVI 68
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G+V + W VD NS + LH+ R S D ++ +L GD I A+I
Sbjct: 69 GKVIEVGPSTWTVDINSPYFAMLHMNDTPW------RMSSGD---LKRYLNAGDYIYAKI 119
Query: 152 HQIS--TEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLA---CGAQVIL 203
++ E LTL LK KL G ++ + S + R N+ ++I+
Sbjct: 120 MSVNEIKESWLTLKEPGLK--KLEGGHMVLIHASRVPRVIGKGGGMVNMVKELTATRIII 177
Query: 204 GCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT-----RLNNVIKALAESK 251
G NG +W+ E G + +++ +RE T R+ + +K L K
Sbjct: 178 GQNGLIWIDGPIE----GVTMAIAAIEMIEREAHTEGLTARVESFLKELKGEK 226
>gi|282165298|ref|YP_003357683.1| putative exosome complex RNA-binding protein [Methanocella
paludicola SANAE]
gi|282157612|dbj|BAI62700.1| putative exosome complex RNA-binding protein [Methanocella
paludicola SANAE]
Length = 226
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 17/191 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + + + G GT+ D + ++ G+V++ + V ++ RYI G++V+
Sbjct: 7 IVVPGDMLGE-DPKLAGIGTYVQDGRVYSANYGLVDRRTN-IKVIPLSGRYIPARGDLVI 64
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ + W D NS E LH++ P D M ++L G+LI A +
Sbjct: 65 GKIVDMTFSNWFADINSPYEGMLHISE--FP-------ERVDPANMGKYLHIGELIIARV 115
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVP----PSLIRRSKSHFCNLA--CGAQVILGC 205
+ + L R L QG ++ + P +I R+ S L + +G
Sbjct: 116 EDVDPTMKVELTMRDEHLRILKQGRVIDISHVKIPRVIGRNGSMISMLKKDLNVSIFVGQ 175
Query: 206 NGYVWVSAIDE 216
NG +W+ D+
Sbjct: 176 NGRIWMKGDDK 186
>gi|52548651|gb|AAU82500.1| exosome complex RNA-binding protein 1 [uncultured archaeon
GZfos18B6]
Length = 223
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E G GT+ +D + A GVV+ + V A++ +Y+ G+VVV
Sbjct: 4 VVVPGDFIS-AEVNRAGEGTYVEDGNVYALKYGVVDD-RGTIKVVALSGKYMPVNGDVVV 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ + W+VD S E+ LH + E R D M E+L DLI A++
Sbjct: 62 GKIAEISFPYWIVDIASPYEARLHKS-------EFGRGEKIDFGNMCEYLDIDDLIVAKV 114
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPS----LIRRSKSHFCNL--ACGAQVILGC 205
+ + L ++ ++ G G L+ V P+ +I RS S L C + +
Sbjct: 115 MNVDVMMRIDLALKN-EFKMDGIGRLIEVSPTKVPRIIGRSGSMIRLLKDKCNCFIFVAK 173
Query: 206 NGYVWVSA 213
NG +W+
Sbjct: 174 NGRIWIKG 181
>gi|284161627|ref|YP_003400250.1| KH type 1 domain-containing protein [Archaeoglobus profundus DSM
5631]
gi|284011624|gb|ADB57577.1| KH type 1 domain protein [Archaeoglobus profundus DSM 5631]
Length = 281
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 25 IHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
+ E + I+ PG+ + G T+ + ++ A V G+++K +V V + RY+
Sbjct: 1 MAEVSRKIVLPGDLLST-NPKTAGPNTYVEGNKVYARVLGLLDKTETMVKVIPLKGRYVP 59
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
+G+ V+G V + + W+VD IL + V Q +++ + E L G
Sbjct: 60 SLGDTVIGIVKEVTANGWIVD---ILSPYVAFLPV------QENPAMRPNKKPNEVLDIG 110
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACG 198
D I A++ I + +TL + + G ++ + P+ + R S
Sbjct: 111 DAIIAKVMNIDPKMRVTLTMKDKLCRPIRVGRIVVINPTRVPRVIGKKGSMIKLLKSELD 170
Query: 199 AQVILGCNGYVWVSA 213
Q+I+G NG +W++
Sbjct: 171 VQIIVGQNGLIWING 185
>gi|40217445|emb|CAE46378.1| conserved hypothetical protein [uncultured archaeon]
gi|268323828|emb|CBH37416.1| putative exosome complex RNA-binding protein 1 [uncultured
archaeon]
Length = 223
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E G GT+ +D + A GVV+ + V A++ +Y+ G+VVV
Sbjct: 4 VVVPGDFIS-TEVNRAGEGTYVEDGNVYALKYGVVDD-RGTIKVVALSGKYMPVNGDVVV 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ + W+VD S E+ LH + E R D M E+L DLI A++
Sbjct: 62 GKIAEISFPYWIVDIASPYEARLHKS-------EFGRGEKIDFGNMCEYLDIDDLIVAKV 114
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPS----LIRRSKSHFCNL--ACGAQVILGC 205
+ + L ++ ++ G G L+ V P+ +I RS S L C + +
Sbjct: 115 MNVDVMMRIDLALKN-EFKMDGIGRLIEVSPTKVPRIIGRSGSMIRLLKDKCNCFIFVAK 173
Query: 206 NGYVWVSA 213
NG +W+
Sbjct: 174 NGRIWIKG 181
>gi|374325949|ref|YP_005084149.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum sp. 1860]
gi|356641218|gb|AET31897.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum sp. 1860]
Length = 235
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 18/198 (9%)
Query: 28 FTDP--ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
F P ++ PG+ + + + G + D+ ++ V G+VE V V + Y +
Sbjct: 3 FVTPRQLIFPGDVIATTDSKVEGP-VYVDNGRYRSLVVGLVEFREDGVVVVPLEGTYKPK 61
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEG 144
G+VVVG VT + + W +D S + + LP E R V E + FL G
Sbjct: 62 KGDVVVGYVTDVLATGWEIDVRSFMPAY-------LPVSEALHRHVDLETTPLTTFLNIG 114
Query: 145 DLISAEIHQI--STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCN--LAC 197
D++ A++ + + E + L + + GK+ G ++ + P + R + N +
Sbjct: 115 DVVIAKVKDVDLTDEYPIILTLKEERVGKVESGTVVEITPVKVPRLIGKRGSMLNTLMEV 174
Query: 198 GAQVILGCNGYVWVSAID 215
G +I+G NG VW+ D
Sbjct: 175 GCDIIVGQNGRVWIRCRD 192
>gi|390939122|ref|YP_006402860.1| Exosome complex RNA-binding protein Rrp4 [Desulfurococcus
fermentans DSM 16532]
gi|390192229|gb|AFL67285.1| Exosome complex RNA-binding protein Rrp4 [Desulfurococcus
fermentans DSM 16532]
Length = 239
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 23/235 (9%)
Query: 32 ILTPGETVEYLE-GYMTGH-GTFPD------DEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
++ PG+ + LE G+++ +PD D ++ + V G+V ++ ++V + S Y
Sbjct: 10 LVRPGDCLAILEEGFISNEIKRYPDKHIYVLDNKVYSDVLGIVYIEDKDINVIPLESVYY 69
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
+ V+G V + W +D + ++ L PG + +R +L
Sbjct: 70 PRKDDTVIGIVDSIGVTSWSIDIRAPYKAIL-------PGSDVIEGFNPITHNLRNYLDT 122
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---AC 197
GDLI A+I L T+ GK+ +G+++ V PS + R K NL
Sbjct: 123 GDLILAKIAVFDRTRDPVLTTKGKGLGKILEGVVVEVKPSKVARLVGKKGSMYNLLSSKS 182
Query: 198 GAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
G + + NGY+ + DE + I+ + +++L + + L ++ ESK+
Sbjct: 183 GCDITIAQNGYILLKCKDEYVTKVLIEAIRLIEL--KAHMRGLTEEVRVFLESKL 235
>gi|294495470|ref|YP_003541963.1| ribosomal RNA-processing protein RRP4 [Methanohalophilus mahii DSM
5219]
gi|292666469|gb|ADE36318.1| ribosomal RNA-processing protein RRP4 [Methanohalophilus mahii DSM
5219]
Length = 255
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 20/222 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + E +G GT+ D ++ + GV N+ V+V + +YI + V+
Sbjct: 5 IVYPGQMLSENEK-QSGIGTYVQDGKVYSLFYGVANDKNR-VTVVPFSGKYIPSPKDYVI 62
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G V + S W+ D S + LH++ E +R D MMR+ + D I
Sbjct: 63 GYVIEVTSSNWIFDIGSPYDGLLHVS-------EYPKRV--DSSMMRKEIDIWDCAILRI 113
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA------CGAQVILGC 205
++T + L + +L +G ++ V + + R H ++ + +G
Sbjct: 114 KDVNTSMKVELSMKDRGLRRLDEGRIIDVSTTKVPRIIGHNGSMVSMLKKESNCDIFIGQ 173
Query: 206 NGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKAL 247
NG +W+ DE+ + Q +E+++ ++ I+ L N I A
Sbjct: 174 NGRIWLKGKDEDMN-RLTQAIEIIE--NKSHISGLTNHISAF 212
>gi|340344303|ref|ZP_08667435.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519444|gb|EGP93167.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 226
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 54 DDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESA 113
D +I ++ G+ E + + V + +YI +I ++V+G+V S W +D NS
Sbjct: 28 DGNKIISTAIGISEIFDDSIKVIPLTGKYIPKIDDLVIGKVVSHTSLSWELDINSCYVGF 87
Query: 114 LHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI--STEGSLTLHTRSLKYGK 171
L V R S +E+ + LK GDL++A I + + +T+ R L GK
Sbjct: 88 LPAQDVF-----GRDFSAHADELSSK-LKAGDLVAARIANFDRTRDPLVTIADRDL--GK 139
Query: 172 LGQGILLTVP----PSLI--RRSKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQN 225
+ G L+++ P LI R + +A A + +G NG++ VS G ++
Sbjct: 140 IDSGHLVSISTSKVPRLIGKRGTMIQMIEMATNAAITIGQNGWIVVSC---ETPEGLLKA 196
Query: 226 MEVVKLSDRET-ITRLNNVIKALAESK 251
+ +K+ D + L + +K + ESK
Sbjct: 197 KKAIKMVDEMAHVANLTDQVKEMLESK 223
>gi|126465757|ref|YP_001040866.1| exosome complex RNA-binding protein Rrp4 [Staphylothermus marinus
F1]
gi|126014580|gb|ABN69958.1| ribosomal RNA-processing protein RRP4 [Staphylothermus marinus F1]
Length = 240
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 20/212 (9%)
Query: 32 ILTPGETVEYLEG-------YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
I+ PG+ + +E Y+ + I + V G+ ++ VSV + Y
Sbjct: 12 IVRPGDVLAIIENSGEVTPKYLPEKHIYIAGNRIYSDVLGIASITDKTVSVIPLEGVYFP 71
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
+ ++V+G +TG+ W+VD + ++ L+ + V E + + +R++L G
Sbjct: 72 KKDDLVIGLITGVGITNWIVDIRAPYKAILNGSEVI----EGFNPIIHN---LRDYLDIG 124
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACG 198
+ I A+I L + GK+ +G ++ V PS + R K NL G
Sbjct: 125 EYIVAKIAVFDRTRDPVLTVKGKGLGKITEGTVIEVKPSRVPRIIGKKGSMLNLLTSKTG 184
Query: 199 AQVILGCNGYVWVSAIDENKSGGFIQNMEVVK 230
+I+ NG VW + ++ IQ +++++
Sbjct: 185 CNIIVAQNGMVWARCPNNHRLNILIQALKIIE 216
>gi|320101500|ref|YP_004177092.1| ribosomal RNA-processing protein RRP4 [Desulfurococcus mucosus DSM
2162]
gi|319753852|gb|ADV65610.1| ribosomal RNA-processing protein RRP4 [Desulfurococcus mucosus DSM
2162]
Length = 238
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Query: 57 EIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHL 116
+ + V GVV ++ V+V + S Y ++V+G V G+ W VD + ++ L
Sbjct: 42 RVYSDVLGVVYIEDKDVNVIPLESIYYPRKDDLVIGVVNGVGITAWSVDIRAPYKAVL-- 99
Query: 117 TSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGI 176
PG + +R +L GD I A+I L + GK+ G+
Sbjct: 100 -----PGSDVIEGFNPIMHNLRNYLDVGDFILAKIAVFDRSRDPVLTMKGKGLGKIVDGV 154
Query: 177 LLTVPPSLIRR---SKSHFCNL---ACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVK 230
++ V PS + R K N+ G + + NGYVW+ DE+ + IQ + +++
Sbjct: 155 VVEVKPSKVARLVGRKGSMYNILTSTSGCDITIAQNGYVWLKCRDEHTTKVLIQAIRLIE 214
Query: 231 LSDRETITRLNNVIKALAESKV 252
+ + L ++ ESK+
Sbjct: 215 --SKAHMRGLTEEVRGFLESKL 234
>gi|167044980|gb|ABZ09645.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG8G2]
Length = 228
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 73 VSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQ 132
V V ++N YI +I ++V+G + + W D NS + L V R S
Sbjct: 50 VRVISLNGIYIPKIDDLVIGTIQSIFGNSWFADINSCYQGMLLGQDVF------GRGSYP 103
Query: 133 DEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR----- 187
M+E L +GD+I A I + + GK+ G L+ +PP+ I R
Sbjct: 104 TTSEMKERLDKGDIIFARIANSDRQREPLISIADKNLGKIDSGELIKIPPTKIPRLIGKH 163
Query: 188 -SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRET-ITRLNNVIK 245
S + A + +G NG++ VS + N G ++ + +++ D + + L + +K
Sbjct: 164 GSMIQTIEASTNATITVGQNGFIVVSCDETN---GLLKALAAIRMIDEQAHLVDLTDKVK 220
Query: 246 ALAE 249
+ E
Sbjct: 221 KMLE 224
>gi|20093820|ref|NP_613667.1| exosome complex RNA-binding protein Rrp4 [Methanopyrus kandleri
AV19]
gi|29336818|sp|Q8TYC0.1|ECR1_METKA RecName: Full=Probable exosome complex RNA-binding protein 1
gi|19886743|gb|AAM01597.1| Predicted exosome subunit, RNA-binding protein Rrp4 (contain S1
domain and KH domain) [Methanopyrus kandleri AV19]
Length = 239
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 21 PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS 80
P E++ ++TPGE + + + GT+ +E+ + V G+V+ + + V +
Sbjct: 2 PEFELYVEDRQVVTPGELLARGQ-VIASEGTYTSGDEVYSKVTGLVDIDGRRIRVIPLAG 60
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM---- 136
Y G+ VVG V ++ W++D + L + LH++ + +EE+
Sbjct: 61 PYRPSPGDFVVGIVEEVKFSSWLIDVRAPLPAILHVS------------NALEEEVDLIE 108
Query: 137 --MREFLKEGDLISAEIHQIS----TEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR--- 187
+ + + GD+I+A + ++ E SL + G+L G ++ + P + R
Sbjct: 109 TDLSRYYRPGDVITAVVREVDPVQRVELSLLEDDAPTRLGRLQGGQVVEIDPVKVPRVIG 168
Query: 188 ---SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITR-LNNV 243
S G +++G NG ++V A +E K + + ++ +R + R L +
Sbjct: 169 RKGSMIKMLKRVLGCDIVVGANGRIYVRAREEPKKERELLAVRAIREIERRSHLRGLTDW 228
Query: 244 IKA 246
+KA
Sbjct: 229 LKA 231
>gi|116754660|ref|YP_843778.1| exosome complex RNA-binding protein Rrp4 [Methanosaeta thermophila
PT]
gi|116666111|gb|ABK15138.1| ribosomal RNA-processing protein RRP4 [Methanosaeta thermophila PT]
Length = 221
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 93/192 (48%), Gaps = 17/192 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + + G GT+ + ++ + + G+ ++ +SV + +YI +G+ V+
Sbjct: 5 IVIPGDLLSE-DTRRAGEGTYVRNGKVYSLLYGIASFRDR-ISVIPLAGKYIPAVGDNVI 62
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G V + W++D NS + LH++ ++ V+D M ++L+ G + A +
Sbjct: 63 GVVKDITFSNWILDINSPYDGLLHISEF------PKKIDVED---MSKYLRIGSSVMARV 113
Query: 152 HQI--STEGSLTLHTRSLKYGKLGQGILL--TVPPSLIRRSKSHFCNLA--CGAQVILGC 205
+ + + LTL+ R L K G+ + + T P LI + S L + +G
Sbjct: 114 KDVDPAMKVELTLNDRRLGVIKTGRVVEISHTRVPRLIGKGGSMISMLKKELNCNIFVGQ 173
Query: 206 NGYVWVSAIDEN 217
NG +WVS +E+
Sbjct: 174 NGRIWVSGNEED 185
>gi|52549120|gb|AAU82969.1| exosome complex RNA-binding protein 1 [uncultured archaeon
GZfos24D9]
Length = 223
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E G GT+ +D + A GV++ + V A++ +Y+ G+VVV
Sbjct: 4 VVVPGDFIS-TEVNRAGEGTYVEDGNVYALKYGVLDD-RGTIKVVALSGKYMPVNGDVVV 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ + W+VD + E+ LH + E R D M E+L DLI A++
Sbjct: 62 GKIAEISFPFWIVDIAAPYEARLHKS-------EFGRGEKIDFGNMCEYLDIDDLIVAKV 114
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPS----LIRRSKSHFCNL--ACGAQVILGC 205
+ + L ++ ++ G G L+ V P+ +I RS S L C + +
Sbjct: 115 MNVDVMMRIDLALKN-EFKMDGVGRLIEVSPTKVPRIIGRSGSMIRLLKDKCNCFIFVAK 173
Query: 206 NGYVWVSA 213
NG +W+
Sbjct: 174 NGRIWIKG 181
>gi|13541137|ref|NP_110825.1| exosome complex RNA-binding protein Rrp4 [Thermoplasma volcanium
GSS1]
gi|29336900|sp|Q97BZ6.1|ECR1_THEVO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|14324524|dbj|BAB59451.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 236
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 29/233 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ VE G PD++ G ++ +Q V V + +YI G+ V+
Sbjct: 10 IVLPGDPVEVQGKIRNGIYRGPDNKYYSEYFG-TLQVSDQYVDVVPFSGQYIPRKGDKVI 68
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ + W VD NS + LH+ R S D ++ +L GD + A+I
Sbjct: 69 GKIIEVGPSTWTVDINSPYFAMLHMNDTPW------RISSGD---LKRYLNSGDYVYAKI 119
Query: 152 HQIS--TEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLA---CGAQVIL 203
++ E LTL LK KL G ++ + S + R N+ ++I+
Sbjct: 120 MSVNEIKESWLTLKEPGLK--KLEGGHMVLIHASRVPRVIGKGGGMVNMVKELTSTRIII 177
Query: 204 GCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT-----RLNNVIKALAESK 251
G NG +W+ E G + +++ +RE T R+ + +K L K
Sbjct: 178 GQNGLIWIDGPIE----GVTMAIAAIEMIEREAHTEGLTVRVESFLKELRGDK 226
>gi|429216661|ref|YP_007174651.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Caldisphaera lagunensis DSM 15908]
gi|429133190|gb|AFZ70202.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Caldisphaera lagunensis DSM 15908]
Length = 230
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+L PGE +E ++ + + E + ++ GVV+ + +S +N YI + G++V+
Sbjct: 7 VLVPGEKIEGTIN-ISDYYIYDYKNEKRVAIIGVVDYKQEGISYSPLNGIYIPKEGDIVI 65
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G VT W VD NS ++ L + + G +Q S Q E ++L+ G+ I A+I
Sbjct: 66 GLVTSHGVANWFVDINSPYQAILSVQ--DFFGTKQ---SSQFPEDPFKYLQVGEYIKAKI 120
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGC 205
+ L + GK+ +GI+++V P+ + R S G + +
Sbjct: 121 AAFDRIRNPLLTVQDKGLGKIAEGIVVSVHPTRVPRIIGKKGSMIEMLKNETGCEFFVAV 180
Query: 206 NGYVWVSAIDE 216
NG + + +E
Sbjct: 181 NGMINIKCQNE 191
>gi|161527939|ref|YP_001581765.1| exosome complex RNA-binding protein Rrp4 [Nitrosopumilus maritimus
SCM1]
gi|380876880|sp|A9A5C8.1|ECR1_NITMS RecName: Full=Probable exosome complex RNA-binding protein 1
gi|160339240|gb|ABX12327.1| KH type 1 domain protein [Nitrosopumilus maritimus SCM1]
Length = 226
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 14/194 (7%)
Query: 64 GVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPG 123
G+ E + V V + +YI +I ++V+G+V S W +D NS L V
Sbjct: 38 GISEIYDDSVRVIPLTGKYIPKINDLVIGKVNSHTSLSWELDINSCYVGFLPAQDVF--- 94
Query: 124 GEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPS 183
R S +E+ + L+ GDL++A I + GK+ G+L+ + PS
Sbjct: 95 --GRDFSAHADELATK-LRTGDLVAARIANFDRTRDPLVSISDRDLGKIDSGVLMEISPS 151
Query: 184 LIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETI 237
+ R S A A V +G NG+V VS E+ G + ++++ +
Sbjct: 152 KVPRLIGKKGSMIQMIEEATDAAVTIGQNGWVVVSC--ESPEGLLKAKKAIQMVNEQAHV 209
Query: 238 TRLNNVIKALAESK 251
L + +K + + K
Sbjct: 210 ANLTDQVKEMLDKK 223
>gi|91772266|ref|YP_564958.1| exosome complex RNA-binding protein Rrp4 [Methanococcoides burtonii
DSM 6242]
gi|121684520|sp|Q12ZB8.1|ECR1_METBU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|91711281|gb|ABE51208.1| Archaeal exosome complex RNA-binding protein 4 [Methanococcoides
burtonii DSM 6242]
Length = 263
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 84/192 (43%), Gaps = 17/192 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + + M G GT+ + I + + G+ VSV + +YI + ++
Sbjct: 5 IVIPGQLLSE-KKEMAGPGTYVKNGNIYSLLYGIA-NFKGRVSVVPFSGKYIPSRKDFII 62
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
V + W+++T S + LH++ E +R D MR+F+ GD + +
Sbjct: 63 VNVIDVTPSNWIMETGSPYDGLLHVS-------EFPKRV--DSSEMRKFMDVGDCVIVRV 113
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA------CGAQVILGC 205
+S + L R L +G ++ V PS + R H ++ V +G
Sbjct: 114 KDVSKAMKVELSMREQGSRALSKGRIIEVVPSKVPRVIGHGGSMVSILKKESNCDVFVGK 173
Query: 206 NGYVWVSAIDEN 217
NG +W++ D++
Sbjct: 174 NGRIWINGKDKD 185
>gi|383319306|ref|YP_005380147.1| RNA-binding protein Rrp4 and related protein [Methanocella conradii
HZ254]
gi|379320676|gb|AFC99628.1| RNA-binding protein Rrp4 and related protein [Methanocella conradii
HZ254]
Length = 224
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 18/193 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + + + G GT+ + ++ G+V++ + V ++ RYI G++V+
Sbjct: 5 IVVPGDLLGE-DPKLAGSGTYVQGGRVYSANYGLVDRRTN-IRVIPLSGRYIPARGDLVI 62
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G+V + W++D NS E LH++ E R D M + L G+LI A +
Sbjct: 63 GKVVDVTFSNWIIDINSPYEGLLHVS-------EYPERV--DPANMSKCLHVGELIIARV 113
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVP----PSLIRRSKSHFCNLA--CGAQVILGC 205
+ + L R L QG ++ + P +I R+ S L + +G
Sbjct: 114 ADVDPSMKVELTMRDEHLKVLKQGRVVDISHVKIPRVIGRNGSMISMLKKDLNVSIFVGQ 173
Query: 206 NGYVWVSAIDENK 218
NG +W+ DE +
Sbjct: 174 NGRIWLKG-DEKR 185
>gi|167044149|gb|ABZ08831.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG5E24]
Length = 228
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 73 VSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQ 132
V V ++N Y+ +I ++V+G + + W D NS + L V R S
Sbjct: 50 VRVISLNGIYMPKIDDLVIGTIQSIFGNSWFADINSCYQGMLLGQDV------FGRGSYP 103
Query: 133 DEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR----- 187
M+E L +GD+I A I + + GK+ G L+ +PP+ I R
Sbjct: 104 TTSEMKERLDKGDIIFARIANSDRQREPLISIADKNLGKIDSGELIKIPPTKIPRLIGKH 163
Query: 188 -SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRET-ITRLNNVIK 245
S + A + +G NG++ VS + N G ++ + +++ D + + L + +K
Sbjct: 164 GSMIQTIEASTNATITVGQNGFIVVSCDETN---GLLKALAAIRMVDEQAHLVDLTDKVK 220
Query: 246 ALAE 249
+ E
Sbjct: 221 KMLE 224
>gi|227827676|ref|YP_002829456.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
M.14.25]
gi|227830373|ref|YP_002832153.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
L.S.2.15]
gi|229579191|ref|YP_002837589.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
Y.G.57.14]
gi|229582057|ref|YP_002840456.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
Y.N.15.51]
gi|229584880|ref|YP_002843382.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
M.16.27]
gi|238619847|ref|YP_002914673.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus islandicus
M.16.4]
gi|284997879|ref|YP_003419646.1| KH, type 1, domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|227456821|gb|ACP35508.1| RNA binding S1 domain protein [Sulfolobus islandicus L.S.2.15]
gi|227459472|gb|ACP38158.1| KH type 1 domain protein [Sulfolobus islandicus M.14.25]
gi|228009905|gb|ACP45667.1| KH type 1 domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012773|gb|ACP48534.1| KH type 1 domain protein [Sulfolobus islandicus Y.N.15.51]
gi|228019930|gb|ACP55337.1| KH type 1 domain protein [Sulfolobus islandicus M.16.27]
gi|238380917|gb|ACR42005.1| KH type 1 domain protein [Sulfolobus islandicus M.16.4]
gi|284445774|gb|ADB87276.1| KH, type 1, domain protein [Sulfolobus islandicus L.D.8.5]
Length = 247
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
S Y ++ +VV+G V ++ WVVD S ++ +L + NL G RSV E +R
Sbjct: 64 SFYYPKVNDVVIGLVEDVEIYGWVVDIKSPYKA--YLPASNLLG-----RSVNVGEDLRR 116
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV-P---PSLIRRSKSHFCNL 195
+L GD + A I L + G++ GI++ + P P +I ++KS + L
Sbjct: 117 YLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVNNGIVIDIMPVKVPRVIGKNKSMYETL 176
Query: 196 A--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
G + + NG +W + I+ + K+ + I L + IK E K+
Sbjct: 177 TSKSGCSMFVANNGRIWATCPSRFSEEILIEAIR--KIENESHIKGLTDRIKQFIEEKL 233
>gi|385773348|ref|YP_005645914.1| KH type 1 domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|385775986|ref|YP_005648554.1| KH type 1 domain-containing protein [Sulfolobus islandicus REY15A]
gi|323474734|gb|ADX85340.1| KH type 1 domain protein [Sulfolobus islandicus REY15A]
gi|323477462|gb|ADX82700.1| KH type 1 domain protein [Sulfolobus islandicus HVE10/4]
Length = 247
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
S Y ++ +VV+G V ++ WVVD S ++ +L + NL G RSV E +R
Sbjct: 64 SFYYPKVNDVVIGLVEDVEIYGWVVDIKSPYKA--YLPASNLLG-----RSVNVGEDLRR 116
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV-P---PSLIRRSKSHFCNL 195
+L GD + A I L + G++ GI++ + P P +I ++KS + L
Sbjct: 117 YLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVNNGIVIDIMPVKVPRVIGKNKSMYETL 176
Query: 196 A--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
G + + NG +W + I+ + K+ + I L + IK E K+
Sbjct: 177 TSKSGCSMFVANNGRIWATCPSRFSEEILIEAIR--KIENESHIKGLTDRIKQFIEEKL 233
>gi|284174963|ref|ZP_06388932.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus solfataricus
98/2]
gi|384434252|ref|YP_005643610.1| K-like, type 1, subgroup [Sulfolobus solfataricus 98/2]
gi|261602406|gb|ACX92009.1| K-like, type 1, subgroup [Sulfolobus solfataricus 98/2]
Length = 247
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
S Y +I ++V+G V ++ WVVD + ++ +L + NL G RS+ E +R
Sbjct: 64 SFYYPKINDIVIGLVEDVEIYGWVVDIKAPYKA--YLPASNLLG-----RSINVGEDLRR 116
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV-P---PSLIRRSKSHFCNL 195
+L GD + A I L + G++ GI++ + P P +I ++KS + L
Sbjct: 117 YLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVSNGIVIDIMPVKVPRVIGKNKSMYETL 176
Query: 196 A--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
G + + NG +W + I+ + K+ + I L + IK E K+
Sbjct: 177 TSKSGCSIFVANNGRIWATCPSRFSEEILIEAIR--KIENESHIKGLTDRIKQFIEEKL 233
>gi|15897637|ref|NP_342242.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus solfataricus
P2]
gi|29337008|sp|Q9UXC4.1|ECR1_SULSO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|299689090|pdb|3L7Z|C Chain C, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689093|pdb|3L7Z|F Chain F, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689096|pdb|3L7Z|I Chain I, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|6015740|emb|CAB57567.1| hypothetical protein [Sulfolobus solfataricus P2]
gi|13813904|gb|AAK41032.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
Length = 249
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
S Y +I ++V+G V ++ WVVD + ++ +L + NL G RS+ E +R
Sbjct: 66 SFYYPKINDIVIGLVEDVEIYGWVVDIKAPYKA--YLPASNLLG-----RSINVGEDLRR 118
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV-P---PSLIRRSKSHFCNL 195
+L GD + A I L + G++ GI++ + P P +I ++KS + L
Sbjct: 119 YLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVSNGIVIDIMPVKVPRVIGKNKSMYETL 178
Query: 196 A--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
G + + NG +W + I+ + K+ + I L + IK E K+
Sbjct: 179 TSKSGCSIFVANNGRIWATCPSRFSEEILIEAIR--KIENESHIKGLTDRIKQFIEEKL 235
>gi|52550029|gb|AAU83878.1| conserved hypothetical protein [uncultured archaeon GZfos34H10]
Length = 223
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 19/225 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E G GT+ +D + A GVV+ + V A++ +Y+ G+VV+
Sbjct: 4 VVVPGDFIS-TEVNRAGGGTYVEDGNVYALKYGVVDD-RGTIKVVALSGKYMPVNGDVVI 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ + W+VD S E+ L + E R D M E+L DLI A++
Sbjct: 62 GKIVEISFPYWIVDIASPYEARLRKS-------EFGRGENIDFGNMCEYLDIDDLIVAKV 114
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPS----LIRRSKSHFCNL--ACGAQVILGC 205
+ + L ++ ++ G G L+ V P+ +I RS S L C + +
Sbjct: 115 MNVDVMMRIDLALKN-EFKMDGVGRLIEVSPTKVPRIIGRSGSMIRLLKDKCNCFIFVAK 173
Query: 206 NGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAES 250
NG +W+ + I + V+K+++ + L + I +S
Sbjct: 174 NGRIWIKGSSADMD---IASQTVMKIANEAHTSGLTDRIALFLDS 215
>gi|15920656|ref|NP_376325.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus tokodaii str.
7]
gi|29336895|sp|Q975G7.1|ECR1_SULTO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|15621439|dbj|BAB65434.1| exosome RNA-binding subunit Rrp4 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 14/157 (8%)
Query: 60 ASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTS 118
+S+ G++E L + + RYI ++G+ V+G + ++ WV+D S S
Sbjct: 42 SSITGLIEVKENLFEIVPLEGHRYIPKVGDTVIGLIEDVEIYGWVLDIKSPY-------S 94
Query: 119 VNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILL 178
LP R V E +R +L GD + A+I + L + G++ GI++
Sbjct: 95 AYLPASSFLGRPVSPGEDLRRYLNLGDYVIAKIETYDRTINPILSIKGKGLGRVSSGIVI 154
Query: 179 TVP----PSLIRRSKSHFCNLA--CGAQVILGCNGYV 209
+P P +I +++S L G ++++ NG +
Sbjct: 155 DIPPVKVPRVIGKNRSMLDTLTSETGCEILVAQNGRI 191
>gi|145579806|pdb|2JEB|I Chain I, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
Length = 251
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
S Y +I ++V+G V ++ WVVD + ++ +L + NL G RS+ E +R
Sbjct: 68 SFYYPKINDIVIGLVEDVEIYGWVVDIKAPYKA--YLPASNLLG-----RSINVGEDLRR 120
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV-P---PSLIRRSKSHFCNL 195
+L GD + A I L + G++ GI++ + P P +I ++KS + L
Sbjct: 121 YLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVSNGIVIDIMPVKVPRVIGKNKSMYETL 180
Query: 196 A--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
G + + NG +W + I+ + K+ + I L + IK E K+
Sbjct: 181 TSKSGCSIFVANNGRIWATCPSRFSEEILIEAIR--KIENESHIKGLTDRIKQFIEEKL 237
>gi|126031139|pdb|2JE6|I Chain I, Structure Of A 9-Subunit Archaeal Exosome
gi|145579803|pdb|2JEA|I Chain I, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|407943803|pdb|4BA1|I Chain I, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943806|pdb|4BA2|I Chain I, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 251
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
S Y +I ++V+G V ++ WVVD + ++ +L + NL G RS+ E +R
Sbjct: 68 SFYYPKINDIVIGLVEDVEIYGWVVDIKAPYKA--YLPASNLLG-----RSINVGEDLRR 120
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV-P---PSLIRRSKSHFCNL 195
+L GD + A I L + G++ GI++ + P P +I ++KS + L
Sbjct: 121 YLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVSNGIVIDIMPVKVPRVIGKNKSMYETL 180
Query: 196 A--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
G + + NG +W + I+ + K+ + I L + IK E K+
Sbjct: 181 TSKSGCSIFVANNGRIWATCPSRFSEEILIEAIR--KIENESHIKGLTDRIKQFIEEKL 237
>gi|83754322|pdb|2BA0|A Chain A, Archaeal Exosome Core
gi|83754323|pdb|2BA0|B Chain B, Archaeal Exosome Core
gi|83754324|pdb|2BA0|C Chain C, Archaeal Exosome Core
Length = 229
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
G+GT+ + ++ A + G+ ++ V V + RY +G+VV+G + + + W VD
Sbjct: 18 AGYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDI 77
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLH--- 163
S ++ L ++ ++ + E L GD I A++ I + +TL
Sbjct: 78 YSPYQAFLPVSE---------NPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD 128
Query: 164 --TRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILGCNGYVWVSA 213
R +++G+ ++ + P+ + R K L Q+++G NG +WV+
Sbjct: 129 RICRPIRFGR-----IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNG 181
>gi|11498103|ref|NP_069328.1| exosome complex RNA-binding protein Rrp4 [Archaeoglobus fulgidus
DSM 4304]
gi|29336577|sp|O29758.1|ECR1_ARCFU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|2650134|gb|AAB90745.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 223
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
G+GT+ + ++ A + G+ ++ V V + RY +G+VV+G + + + W VD
Sbjct: 18 AGYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDI 77
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLH--- 163
S ++ L ++ ++ + E L GD I A++ I + +TL
Sbjct: 78 YSPYQAFLPVSE---------NPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD 128
Query: 164 --TRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILGCNGYVWVSA 213
R +++G+ ++ + P+ + R K L Q+++G NG +WV+
Sbjct: 129 RICRPIRFGR-----IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNG 181
>gi|330508836|ref|YP_004385264.1| exosome complex RNA-binding protein RRP4 [Methanosaeta concilii
GP6]
gi|328929644|gb|AEB69446.1| exosome complex RNA-binding protein RRP4 [Methanosaeta concilii
GP6]
Length = 221
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 26/231 (11%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + + +G GT+ D + + + G+ ++ ++V + +Y+ G+ V+
Sbjct: 5 VVVPGDLLSE-DAKRSGEGTYIKDGSVYSLLYGLANYRDK-INVIPLAGKYMPAPGDNVI 62
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G V + W+VD NS + LH++ E +R DE M ++L+ G I +
Sbjct: 63 GVVKDITFSNWIVDINSPYDGLLHIS-------EFPKRIESDE--MSKYLRIGSSIMTRV 113
Query: 152 HQI--STEGSLTLHTRSLKYGKLGQGILL--TVPPSLIRRSKSHFCNLA--CGAQVILGC 205
+ + + LTL+ R L + GQ I + T P LI + S L + +G
Sbjct: 114 KDVDPTMKVELTLNDRKLGPIRTGQVIEISHTRVPRLIGKGGSMISMLKKEVNCSIFVGQ 173
Query: 206 NGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT-----RLNNVIKALAESK 251
NG +W++ ++ ++ + L +RE T R+ + +KA E++
Sbjct: 174 NGRIWINGCADDTD----LALKTIALIEREAHTNGLTDRIVSFLKAEKEAR 220
>gi|407461956|ref|YP_006773273.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045578|gb|AFS80331.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
koreensis AR1]
Length = 226
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 64 GVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPG 123
G+ E + V V + +YI +I ++V+G+V S W +D NS L V
Sbjct: 38 GISEIYDDSVRVIPLTGKYIPKINDLVIGKVNSHTSLSWELDINSCYVGFLPAQDVF--- 94
Query: 124 GEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPS 183
R S +E+ + LK GDL++A I + GK+ G L+ + PS
Sbjct: 95 --GRDFSAHADELATK-LKTGDLVAARIANFDRTRDPLVSISDRDLGKIDSGDLVEISPS 151
Query: 184 LIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETI 237
+ R S A A + +G NG+V VS E+ G + ++++ +
Sbjct: 152 KVPRLIGKKGSMIQMIEEATDAAITIGQNGWVVVSC--ESPEGLLKAKKAIQMVNEQAHV 209
Query: 238 TRLNNVIKALAESK 251
L + +K + + K
Sbjct: 210 ANLTDQVKEMLDKK 223
>gi|302348937|ref|YP_003816575.1| exosome complex RNA-binding protein 1 [Acidilobus saccharovorans
345-15]
gi|302329349|gb|ADL19544.1| Probable exosome complex RNA-binding protein 1 [Acidilobus
saccharovorans 345-15]
Length = 234
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 12/191 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ VE ++ + F + E +A+V G+++ ++ S + Y G++V+
Sbjct: 11 LVLPGDKVEGIKQAQNIY-LFDYNGEKRAAVAGLLDIKDEGASFVPLKGFYFPNEGDIVI 69
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G VT + W +D NS ++ L + G ++ V D+ +LK GD + A I
Sbjct: 70 GLVTSHAAANWFLDINSPYQATLSIQDFF---GVKQGGQVPDDPFT--YLKIGDYVKARI 124
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGC 205
S L + G++ +G ++TV P + R S A G V +
Sbjct: 125 VAFDRVRSPALTVQDKGLGRITEGTVVTVRPVKVPRIIGKKGSMIETIKSASGCDVFVAV 184
Query: 206 NGYVWVSAIDE 216
NG V ++ +E
Sbjct: 185 NGRVHITCQNE 195
>gi|389860734|ref|YP_006362974.1| ribosomal RNA-processing protein RRP4 [Thermogladius cellulolyticus
1633]
gi|388525638|gb|AFK50836.1| ribosomal RNA-processing protein RRP4 [Thermogladius cellulolyticus
1633]
Length = 241
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 32 ILTPGETV-EYLEGYMTGHGTFPD------DEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
I+ PG+T+ E E G P+ + +I + GV ++V N+ Y
Sbjct: 15 IVRPGDTLAEIEEDGNQGFKRLPEKHVYLVNNKIYSDAYGVASVSENDIAVIPFNTVYYP 74
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
+VV+G + G+ W V+ S ++ L+ + E D ++ +L G
Sbjct: 75 RRDDVVIGVIEGIGITAWEVNIRSPYKAYLNASDAI----ENFNPLYHD---LKSYLDVG 127
Query: 145 DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACG 198
D++ A+I L R GK+ +GI++ V PS I R K NL G
Sbjct: 128 DMVLAKIVAFDRTRDPLLTIRGKGLGKIIEGIVIEVKPSRIPRIIGKKGSMFNLLTTKTG 187
Query: 199 AQVILGCNGYVWVSAIDENKSGGFIQNMEVVK 230
+ + NG++W DE + Q +++++
Sbjct: 188 CDITVAQNGFIWAKCPDEYRGEVLTQAIKIIE 219
>gi|52549529|gb|AAU83378.1| RNA-binding protein Rrp4 [uncultured archaeon GZfos27G5]
Length = 228
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 95/195 (48%), Gaps = 20/195 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E G GT+ ++ ++ AS G+V V + V ++ +YI G+V++
Sbjct: 4 VVVPGDFLSE-ETKRAGEGTYVEEGKVYASQYGIV-NVRGEIKVVPLSGKYIPSNGDVII 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++T + W+VD S E+ LH+++ L G + + + M E+L DL+ ++
Sbjct: 62 GKITEISFPFWIVDLASPYEARLHVSA--LSGIAREKIEFGN---MSEYLNVDDLVVVKV 116
Query: 152 HQISTEGSLTLHTR---SLKYGKLGQGILLTVP----PSLIRRSKSHFCNL--ACGAQVI 202
++ + L + L+ G G L+ +P P +I RS S L C +
Sbjct: 117 MDVNVLMKIELALQEDFELRRG----GRLIEIPHTKVPRVIGRSGSMITMLKEKCNCFIF 172
Query: 203 LGCNGYVWVSAIDEN 217
+ NG +W+ +++
Sbjct: 173 IAKNGRIWIRGKEDD 187
>gi|408404986|ref|YP_006862969.1| exosome complex RNA-binding protein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365582|gb|AFU59312.1| exosome complex RNA-binding protein [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 263
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 24/224 (10%)
Query: 64 GVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPG 123
G+ E V V ++ YI + ++V+G+V S W VD NS + HL + ++ G
Sbjct: 36 GIAETGRDGVKVIPLSGVYIPRVNDLVIGKVIDHSSLSWEVDINSCFSA--HLPAQDVFG 93
Query: 124 GEQRRRSVQDEEMMREFLKEGDLISAEIHQI--STEGSLTLHTRSLKYGKLGQGILLTVP 181
R S ++M R F GD+I+A I + + LT+ R L GK+ +G +L +
Sbjct: 94 ---RDFSPARDDMSRHFAI-GDMITARIMAFDRTRDPMLTVQDRDL--GKIPRGEVLKIS 147
Query: 182 ----PSLIRRSKSHFCNL--ACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRE 235
P LI + S + A +V++G NG V V+ G + +K+ + E
Sbjct: 148 ATRVPRLIGKRGSMIQTIEQATQTRVLIGQNGIVVVTG---RTPEGIKLAVRAIKMVEEE 204
Query: 236 TIT-RLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPE 278
T L IK L + + DT Q E SL+ +PE
Sbjct: 205 AHTANLTQRIKVL----LNVPDTPPQQQQETSLRSPVGGASQPE 244
>gi|384245743|gb|EIE19236.1| exonuclease component of the exosome [Coccomyxa subellipsoidea
C-169]
Length = 227
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 27/198 (13%)
Query: 32 ILTPGETVEYL--EGYM-TGHGTFPDDEEIKASVGGVVEKVNQ-LVSVRAMNSRYIGEIG 87
++ PG+ V L +G + G G + D + S G++ + + V RYI G
Sbjct: 4 VVGPGDVVAVLPEQGQVKVGAGLYADGTNLHTSRAGLLRQTKAGKLWVEGRQKRYISSTG 63
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
+ VVG V ++ +VVD + + L++ S G RR R L EGDL+
Sbjct: 64 DDVVGVVLERHAENFVVDIGAPFPAVLNILSFE---GATRRN--------RPKLAEGDLV 112
Query: 148 SAEI----HQISTEGSLT-LHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLACGA 199
A + I TE S T ++ YG L +G L++ +L RR S + A G
Sbjct: 113 YARVVLAHRDIDTELSCTDTGGKASGYGPLKEGHLISCSTALARRLLASPTAPVLEALGN 172
Query: 200 ----QVILGCNGYVWVSA 213
++ +G NG VW+ A
Sbjct: 173 SLQFEIAIGQNGRVWIDA 190
>gi|327310390|ref|YP_004337287.1| exosome complex RNA-binding protein Rrp4 [Thermoproteus uzoniensis
768-20]
gi|326946869|gb|AEA11975.1| exosome complex RNA-binding protein Rrp4 [Thermoproteus uzoniensis
768-20]
Length = 236
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 21/228 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ V + + G + DD + +AS G+VE + + V + Y + G+VV+
Sbjct: 9 VIFPGDLVATSDESVEG-AVYIDDGKYRASSVGLVEFRDNKIVVVPLEGSYRPKPGDVVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEGDLISAE 150
G VT + + W VD + L + LP E + + E+ + L GD + A
Sbjct: 68 GYVTDVLASGWEVDVRAPLAAW-------LPVSEATAKYIDLEKTSLTSLLNIGDAVIAV 120
Query: 151 IHQI--STEGSLTLHTR-SLKYGKLGQGILLTVP----PSLIRRSKSHFCNLA-CGAQVI 202
+ + + E + L R + GK+ G ++ + P +I + S ++ G +I
Sbjct: 121 VKDVDLTDEFPVMLTLREGERLGKIESGFVVELSPVKVPRVIGKKGSMISTISELGCDII 180
Query: 203 LGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRET-ITRLNNVIKALAE 249
+G NG +W + +Q +E + DRE+ + L + +KAL E
Sbjct: 181 VGQNGRLWAKCPGPDAEFVLLQIIEKI---DRESHVAGLTDRVKALVE 225
>gi|167044509|gb|ABZ09184.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG6J21]
Length = 228
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 73 VSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQ 132
V V ++N Y+ +I ++V+G + + W D NS + L V R S
Sbjct: 50 VRVISLNGIYMPKIDDLVIGTIQSIFGNSWFADINSCYQGMLLGQDV------FGRGSYP 103
Query: 133 DEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR----- 187
M+E L +GD+I A I + + GK+ G L+ + P+ I R
Sbjct: 104 TTSEMKERLDKGDIIFARIANSDRQREPLISIADKNLGKIDSGELIKISPTKIPRLIGKH 163
Query: 188 -SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRET-ITRLNNVIK 245
S + A + +G NG++ VS + N G ++ + +++ D + + L + +K
Sbjct: 164 GSMIQTIEASTNATITVGQNGFIVVSCDETN---GLLKTLAAIRMVDEQAHLVDLTDKVK 220
Query: 246 ALAE 249
+ E
Sbjct: 221 KMLE 224
>gi|18313179|ref|NP_559846.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum aerophilum
str. IM2]
gi|29336867|sp|Q8ZVM8.1|ECR1_PYRAE RecName: Full=Probable exosome complex RNA-binding protein 1
gi|18160693|gb|AAL64028.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 235
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 23/218 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + + + G + D+ + ++ V G+VE +V V + Y + G++V+
Sbjct: 9 LVFPGDVIATADSKVEGP-VYLDNGKYRSLVVGLVEFREDVVVVVPLEGTYKPKKGDLVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEG--DLIS 148
G VT + + W VD S + + LP GE R V E + FL G +
Sbjct: 68 GYVTDVLATGWEVDVRSFMPAY-------LPVGEALHRHVDLETTPLTTFLNIGDVVVAK 120
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCN--LACGAQVIL 203
+ ++ E + L + K GK+ G ++ + P + R + N + G +++
Sbjct: 121 VKDVDLTDEYPIILTLKDEKVGKVESGTVVEITPVKVPRVIGKRGSMLNTLMELGCDIVV 180
Query: 204 GCNGYVWVSAIDENKS---GGFIQNME----VVKLSDR 234
G NG +WV D I+ +E V+ L+DR
Sbjct: 181 GQNGRIWVKCKDPRDEVFLASLIRKIEAESHVMGLTDR 218
>gi|156543108|ref|XP_001605422.1| PREDICTED: exosome complex component RRP40-like [Nasonia
vitripennis]
Length = 236
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 29/200 (14%)
Query: 32 ILTPGETVEYLEG------YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
I+ PG+ ++ +E + G G D E + A G+++K + V + RYI
Sbjct: 8 IVMPGDRIQGIESADKNQKVILGPGLRTDGETVYACKAGILKKRISIYYVDSYQKRYIPS 67
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
GE VVG VT + VD + +A L+ + G +R R ++ GD
Sbjct: 68 QGENVVGVVTQKAGDIFRVDIGANEPAA--LSYLGFEGASKRNRP---------DVQVGD 116
Query: 146 LISAEIHQIST--EGSLTLHTRSLKYGKLG----QGILLTVPPSLIRRSKSHFCNL---- 195
++ A++ S E L K GKLG G+LLT SL+R+ C L
Sbjct: 117 IVYAKLIVASKDMESELVCVDSFGKKGKLGVLSPNGMLLTCSLSLVRKILKANCPLLRLL 176
Query: 196 --ACGAQVILGCNGYVWVSA 213
++ +G NG +W+ +
Sbjct: 177 SEELKYEIAVGMNGKIWIKS 196
>gi|21228724|ref|NP_634646.1| exosome complex RNA-binding protein Rrp4 [Methanosarcina mazei Go1]
gi|29336796|sp|Q8PTT9.1|ECR1_METMA RecName: Full=Probable exosome complex RNA-binding protein 1
gi|20907233|gb|AAM32318.1| hypothetical protein MM_2622 [Methanosarcina mazei Go1]
Length = 260
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
+G+GT+ +++I +S+ G+ V V + YI + +VV+G V + W++D
Sbjct: 19 SGYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSVNDVVIGVVIVVTPSNWILDI 78
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRS 166
+ + LH++ + R V+ EM E L GD + + + + + L R
Sbjct: 79 AAPYDGLLHVS--------EYPRRVESREMP-EILDVGDSVILRVRDVDSSMKIELALRD 129
Query: 167 LKYGKLGQGILLTVPPSLIRRSKSHFCNL------ACGAQVILGCNGYVWVSAIDEN 217
KL G ++ V P + R H ++ + +G NG +W+ DE+
Sbjct: 130 PNLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWIDGKDED 186
>gi|148643417|ref|YP_001273930.1| exosome complex RNA-binding protein Csl4 [Methanobrevibacter
smithii ATCC 35061]
gi|222445659|ref|ZP_03608174.1| hypothetical protein METSMIALI_01300 [Methanobrevibacter smithii
DSM 2375]
gi|261349793|ref|ZP_05975210.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
2374]
gi|148552434|gb|ABQ87562.1| predicted RNA-binding protein [Methanobrevibacter smithii ATCC
35061]
gi|222435224|gb|EEE42389.1| putative exosome complex RNA-binding protein Csl4
[Methanobrevibacter smithii DSM 2375]
gi|288860577|gb|EFC92875.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
2374]
Length = 190
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 76/126 (60%), Gaps = 7/126 (5%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQL--VSVRAMNSR-YIGEIGEVVV 91
PG+ + +E Y+ G GT+ D+ EIK+SV G V+ +++ ++V+A +S+ + ++G+ V
Sbjct: 11 PGDKLGIIEQYLLGKGTYEDNGEIKSSVLGNVQIDSKMRTITVKAKSSQPALLKLGDTVY 70
Query: 92 GRVTGLQSQKWVVDTNSILESA--LHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
G++T +++Q+ V+ + + +S+ L L + Q + D+ + + + GD++ A
Sbjct: 71 GQITDIKTQRANVNIDCLTDSSRPLALPYMGAIHISQAKSGYLDK--LTDAFRIGDIVKA 128
Query: 150 EIHQIS 155
++ +I+
Sbjct: 129 KVVKIT 134
>gi|452211129|ref|YP_007491243.1| Exosome complex RNA-binding protein 1 [Methanosarcina mazei Tuc01]
gi|452101031|gb|AGF97971.1| Exosome complex RNA-binding protein 1 [Methanosarcina mazei Tuc01]
Length = 247
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
+G+GT+ +++I +S+ G+ V V + YI + +VV+G V + W++D
Sbjct: 19 SGYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSMNDVVIGVVIVVTPSNWILDI 78
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRS 166
+ + LH++ + R V+ E M E L GD + + + + + L R
Sbjct: 79 AAPYDGLLHVS--------EYPRRVESRE-MPEILDVGDSVILRVRDVDSSMKIELALRD 129
Query: 167 LKYGKLGQGILLTVPPSLIRRSKSHFCNL------ACGAQVILGCNGYVWVSAIDEN 217
KL G ++ V P + R H ++ + +G NG +W+ DE+
Sbjct: 130 PNLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWIDGKDED 186
>gi|171185835|ref|YP_001794754.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum neutrophilum
V24Sta]
gi|170935047|gb|ACB40308.1| RNA binding S1 domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 238
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 29/226 (12%)
Query: 28 FTDP--ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE 85
F P ++ PG+ V + + G F D+ ++ V G+VE + +V + + Y +
Sbjct: 3 FVTPRQLIFPGDVVATADSKVEGP-VFLDNGRYRSLVVGLVEFRDDVVVIVPLEGTYRPK 61
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEG 144
G++VVG VT + + W VD S + + LP E R V E + FL G
Sbjct: 62 KGDLVVGYVTDVLATGWEVDIRSFMPA-------YLPVSEALHRHVDLETTPLTTFLNIG 114
Query: 145 --DLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCN----L 195
+ + ++ E + L + + GK+ +G ++ + P + R K N L
Sbjct: 115 DVVVAKVKDVDLTDEYPVILTLKEERVGKVERGTVVEISPVKVPRVIGKKGSMLNTLMEL 174
Query: 196 ACGAQVILGCNGYVWV---SAIDENKSGGFIQNME----VVKLSDR 234
+C +++G NG +W A DE I+ +E V+ L+DR
Sbjct: 175 SC--DIVVGQNGRIWARCKDARDEVFLASLIKKIETESHVMGLTDR 218
>gi|330835839|ref|YP_004410567.1| exosome complex RNA-binding protein Rrp4 [Metallosphaera cuprina
Ar-4]
gi|329567978|gb|AEB96083.1| exosome complex RNA-binding protein Rrp4 [Metallosphaera cuprina
Ar-4]
Length = 247
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 14/160 (8%)
Query: 60 ASVGGVVEKVNQLVSVRAM-NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTS 118
ASV G++E + V + S Y IG+ V+ V ++ W+VD + S
Sbjct: 43 ASVVGILEIKEPVFEVIPLEGSHYYPRIGDTVIALVKDVEQYGWIVDIKAPY-------S 95
Query: 119 VNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILL 178
LP R E +R ++ GD + A++ TL + G++ G ++
Sbjct: 96 AYLPAASLLGRPANVGEDLRRYIDVGDFVIAKLESFDRTSDPTLSVKGKGLGRVSTGTVI 155
Query: 179 TV-P---PSLIRRSKSHFCNLA--CGAQVILGCNGYVWVS 212
V P P ++ + +S L+ G +I+ NG VW +
Sbjct: 156 DVLPVKVPRIVGKGRSMMDTLSTETGCDLIVAQNGRVWAN 195
>gi|167043478|gb|ABZ08175.1| putative KH domain protein [uncultured marine microorganism
HF4000_APKG2H5]
Length = 223
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 27/194 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PGE + EG+ GHG D ++A+ G V VS+ + + Y ++V+
Sbjct: 19 LVAPGEDLGESEGHAAGHGVLVMDGRLRATKQGRVMTNENTVSIEPLRTAYTPRPSDLVI 78
Query: 92 GRVTGLQSQKWVVDT----NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
G V G + W +D N+IL +L G R + G+ +
Sbjct: 79 GFVEGCTNNIWFIDIGAPFNAILPMSLGPGKAAFGG-------------TRSLMDIGEAV 125
Query: 148 SAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFC--------NLACGA 199
+ ++ S L + + K+ G + + P L+ R K + C
Sbjct: 126 ICRVQEVEETHSSVLTMKGMGLRKIRSGTIEEIDPHLLGRLKGKAGRSLRQLKEDTDC-- 183
Query: 200 QVILGCNGYVWVSA 213
++I+ NG +W+
Sbjct: 184 RIIVADNGRLWIDG 197
>gi|332796514|ref|YP_004458014.1| KH type 1 domain-containing protein [Acidianus hospitalis W1]
gi|332694249|gb|AEE93716.1| KH type 1 domain protein [Acidianus hospitalis W1]
Length = 247
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 95/200 (47%), Gaps = 18/200 (9%)
Query: 60 ASVGGVVEKVNQLVSVRAM-NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTS 118
++V G+V+ + + + S Y +G+ V+G + ++ W+VD + + +L +
Sbjct: 47 STVIGIVDPKDSTFEIIPLEGSHYYPRVGDTVIGLIEDVELYGWIVDIKA--PYSAYLPA 104
Query: 119 VNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILL 178
++L G R V E +R++L GD + A + + L + G+L G ++
Sbjct: 105 LSLLG-----RPVNIGEDLRKYLDIGDYVIARVESFDRTINPVLTVKGKGLGRLNNGKII 159
Query: 179 TV-P---PSLIRRSKSHFCNLA--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLS 232
+ P P +I ++KS + L G ++I+ NG +W + ++ +++ +
Sbjct: 160 DIMPVKVPRVIGKNKSMYELLTSETGCEMIVAQNGRIWANCPSKDMEEVLFLSIKTI--- 216
Query: 233 DRET-ITRLNNVIKALAESK 251
+RE+ I L + IK L E K
Sbjct: 217 ERESHIKGLTDRIKELIEKK 236
>gi|410671926|ref|YP_006924297.1| exosome complex RNA-binding protein Rrp4 [Methanolobus
psychrophilus R15]
gi|409171054|gb|AFV24929.1| exosome complex RNA-binding protein Rrp4 [Methanolobus
psychrophilus R15]
Length = 267
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 16/177 (9%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
G GT+ D ++ + + GV N+ +SV + +YI + V+G V + W+ +
Sbjct: 19 AGSGTYVRDGKVYSLLYGVRNAKNR-ISVIPFSGKYIPTSKDFVIGTVIDVTPSNWIFNI 77
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRS 166
S + LH + E RR D M + GD + +S + L R
Sbjct: 78 GSPYDGLLHAS-------EYPRRV--DSSQMAAIMDVGDSALLRVQDVSPAMKVELSMRE 128
Query: 167 LKYGKLGQGILLTVPPSLIRRSKSHFCNLAC------GAQVILGCNGYVWVSAIDEN 217
L G L+ V P+ + R H ++ ++ +G NG VW++ D +
Sbjct: 129 RGLRPLKIGRLIEVVPAKVPRVIGHGGSMVSMLKKETNCEIFVGQNGRVWINGKDND 185
>gi|170290984|ref|YP_001737800.1| exosome complex RNA-binding protein Rrp4 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|380876878|sp|B1L6N8.1|ECR1_KORCO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|170175064|gb|ACB08117.1| KH type 1 domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 228
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 28/185 (15%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+ PG+ V Y+ GT I++ G+V + +S+ + YI + ++V+G
Sbjct: 25 VKPGKDV-----YVDESGT------IRSKKLGLVSLKDDEISIVPLVGAYIPKEDDLVIG 73
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
V+ + +VD S + AL + QRR D + + LK GD+I A++
Sbjct: 74 IVSKISGNTILVDIRSPYQGALPI---------QRRAERVD--LKKYDLKIGDVILAKVR 122
Query: 153 QISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI------RRSKSHFCNLACGAQVILGCN 206
SL L + GKL G LL V P+ + R+S A +++I+ N
Sbjct: 123 SFDGASSLILTIDAEGLGKLEGGYLLEVDPAKVPRVIGKRQSMLSMLKEATRSEIIVANN 182
Query: 207 GYVWV 211
G +WV
Sbjct: 183 GRIWV 187
>gi|167045223|gb|ABZ09883.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG8O8]
Length = 225
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 16/210 (7%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEV 89
D + PG+ + Y DD+ + A+ G E + V+V + Y + ++
Sbjct: 6 DRFVLPGDVI-VTGTYRPEQNVVLDDDRVTATAVGFYEIEDNAVNVIPLTGFYTPKPDDL 64
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
V+G++T S W V+ NS S L + G+ S +DE + LK GDLI
Sbjct: 65 VIGKITSHTSFSWEVNINSFCVSILPAFDI---FGKDYSPS-KDE--LSSKLKTGDLIVG 118
Query: 150 EIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVIL 203
I ++ + GK+ G L+ + P+ I R S A A + +
Sbjct: 119 RIVNVNPGRDPLMTINGENLGKIDSGELVKISPTKIPRLIGKDGSMIQTIEAATNATITV 178
Query: 204 GCNGYVWVSAIDENKSGGFIQNMEVVKLSD 233
G NG V + + S + +E VK+ D
Sbjct: 179 GQNGLVVLKC---DNSTSLKKAIEAVKIMD 205
>gi|52352384|gb|AAU43673.1| conserved hypothetical protein [uncultured archaeon GZfos26D8]
Length = 225
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E G GT+ ++ ++ AS G+V V + V ++ +Y+ G+VV+
Sbjct: 4 VVVPGDFLSE-ETKRAGEGTYVEEGKVYASQYGIV-NVRGEIKVVPLSGKYMPSKGDVVI 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ 126
GR+T + W+VD S E+ LH+++++ EQ
Sbjct: 62 GRITEISFPFWIVDLASPYEARLHVSALSGIAREQ 96
>gi|352682027|ref|YP_004892551.1| exosome complex RNA-binding protein [Thermoproteus tenax Kra 1]
gi|350274826|emb|CCC81472.1| exosome complex RNA-binding protein [Thermoproteus tenax Kra 1]
Length = 236
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 103/235 (43%), Gaps = 21/235 (8%)
Query: 27 EFTDP--ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIG 84
+F P I+ PG+ V + + G + D+ + +AS G+VE + + + Y
Sbjct: 2 KFVAPRQIIFPGDLVASEDENVEG-AVYLDNGKYRASSVGLVEFRENKIVIVPLEGVYRP 60
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKE 143
+ G++V+G +T + + W VD + + L L E + + E + + L
Sbjct: 61 KQGDIVIGYITDVLASGWEVDIRAPFPAWLPLN-------EAVTKYIDLERIALTSLLNI 113
Query: 144 GDLISAEIHQI--STEGSLTLHTR-SLKYGKLGQGILLTVP----PSLIRRSKSHFCNLA 196
GD++ A++ I + E +TL R + GK+ G + + P +I + S ++
Sbjct: 114 GDVVIAQVKDIDLTDEYPVTLTLREGERLGKIESGFIAEISPVKVPRVIGKKGSMLATIS 173
Query: 197 -CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAES 250
G ++ +G NG +W D ++ + K+ + L + +KA ES
Sbjct: 174 ELGCELTIGQNGRIWAKCRDTEAELALLKVL--AKIERESHVAGLTDRVKAFIES 226
>gi|288930696|ref|YP_003434756.1| RNA binding S1 domain protein [Ferroglobus placidus DSM 10642]
gi|288892944|gb|ADC64481.1| RNA binding S1 domain protein [Ferroglobus placidus DSM 10642]
Length = 226
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + + GHGT+ ++ ++ A G+++K V V + +YI +G+VVV
Sbjct: 4 IVLPGDLLA-TNPKVAGHGTYVENGKVYAKFLGLLDKTETSVRVIPLRGKYIPSVGDVVV 62
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G V + WVV+ NS + L Q ++ + E L GD+I A+I
Sbjct: 63 GVVKEVTVNGWVVEINSPYMAFLP---------AQENPEMKPNKKPNEVLDIGDIIVAKI 113
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILGC 205
I + TL + + G ++ + P+ + R K L G VI+G
Sbjct: 114 INIDPKMKATLTMKDKMCRPIRFGRIVAINPARVPRVIGKKGSMIKLFKNELGVNVIVGQ 173
Query: 206 NGYVWVSA 213
NG +W++
Sbjct: 174 NGLIWLNG 181
>gi|167389389|ref|XP_001738942.1| exosome complex exonuclease RRP40 [Entamoeba dispar SAW760]
gi|165897609|gb|EDR24707.1| exosome complex exonuclease RRP40, putative [Entamoeba dispar
SAW760]
Length = 233
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 26/190 (13%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMN--SRYIGEIGEVVVG 92
PGET EY++G G G + S G+++ Q + +Y I +V VG
Sbjct: 15 PGETFEYVQGARFGDGIIKRNGVPTISRAGILKYQQQTKYYHVFSDLKKYHPSIEDVCVG 74
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
++ K++VD S + L + ++S + L +GD + +
Sbjct: 75 KIVKRVKDKYLVDIGSYCYAELDFLAFE----NATKKS-------KPNLLDGDYVYCRV- 122
Query: 153 QISTEG---SLTLHTRSLK--YGKLGQGILLTVPPSLIRRSKSH-FCNLACGAQ-----V 201
+S E + + R ++ +G+L G +VP S+ RR S C L C Q +
Sbjct: 123 -VSKEKVPQVVCVSQRKMEDGFGELQGGWAFSVPQSMCRRIMSDGCCVLTCIGQYTPFEI 181
Query: 202 ILGCNGYVWV 211
+G NG VWV
Sbjct: 182 AVGVNGMVWV 191
>gi|52548822|gb|AAU82671.1| conserved hypothetical protein [uncultured archaeon GZfos19A5]
Length = 228
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E G GT+ ++ ++ AS G+V + + + V +++ +Y+ G+VV+
Sbjct: 4 VVVPGDFLSE-ETKRAGEGTYVEEGKVYASQYGIVSERGE-IKVVSLSGKYMPSNGDVVI 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++T + W+V+ S E+ LH+++ L G + + + M E+L DL+ ++
Sbjct: 62 GKITAISFPFWIVNLASPYEARLHVSA--LSGIAREKIEFGN---MSEYLDVDDLVVVKV 116
Query: 152 HQISTEGSLTLHTR---SLKYGKLGQGILLTVP----PSLIRRSKSHFCNL--ACGAQVI 202
++ + L + L+ G G L+ +P P +I RS S L C +
Sbjct: 117 MDVNVLMKIDLALQEDVELRRG----GRLIEIPHTKVPRVIGRSGSMIKMLKEKCNCFIF 172
Query: 203 LGCNGYVWVSAIDEN 217
+ NG +W+ +E+
Sbjct: 173 IAKNGRIWIRGKEED 187
>gi|385806379|ref|YP_005842777.1| exosome complex RNA-binding protein Rrp4 [Fervidicoccus fontis
Kam940]
gi|383796242|gb|AFH43325.1| exosome complex RNA-binding protein Rrp4 [Fervidicoccus fontis
Kam940]
Length = 242
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
Query: 60 ASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSV 119
+S+ G+VE + + YI + ++V+G +T + W VD NS E L ++
Sbjct: 41 SSIIGMVEIKDDKLFFYPKEQIYIPKPNDLVIGLITDVGPTYWDVDLNSPYEGQLPVSET 100
Query: 120 NLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLT 179
L R++ + MR+FL GD ++ ++ L R GK+ G ++
Sbjct: 101 PL------RQTHATVDTMRKFLSIGDFVALKVLSFDRLRDPLLTMRGKGLGKIYGGKVID 154
Query: 180 VPP----SLIRRSKSHFCNLA--CGAQVILGCNGYVWVSAID 215
+ SLI R ++ + ++++ NG VW+ D
Sbjct: 155 IAQHAVNSLINRKRALVEAIVKETKTEILISNNGRVWIKGTD 196
>gi|414879735|tpg|DAA56866.1| TPA: hypothetical protein ZEAMMB73_993215 [Zea mays]
Length = 241
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 171 KLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVWVSAI----DENKSGGFIQN 225
+L +G LL V P L++R K HF +L +IL CNG++WV ++ K+ G Q
Sbjct: 98 ELERGQLLMVAPYLVKRKKQHFHHLEKYNVDLILDCNGFIWVGEHVVVGEKPKTTGGQQG 157
Query: 226 M-----EVVKLSDRETITRLNNVIKALA 248
L R+ I RL N ++ L+
Sbjct: 158 FSTEAENFTPLETRKHICRLANSVRVLS 185
>gi|307594972|ref|YP_003901289.1| K-like, type 1, subgroup [Vulcanisaeta distributa DSM 14429]
gi|307550173|gb|ADN50238.1| K-like, type 1, subgroup [Vulcanisaeta distributa DSM 14429]
Length = 245
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 24/245 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + + ++G + D A VG + + + V V ++ Y +G++V+
Sbjct: 10 IVLPGDAIATKDYNVSGSIYWDGDVAYSAVVGLINIRGERDVEVIPLSGIYKPRVGDIVI 69
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEGDLISAE 150
G V + WV+D S S LP E + V + ++ L GD++ A
Sbjct: 70 GYVIDIGLTGWVIDIKSPY-------SAYLPIQEATLKPVDLMTVDLKSLLGIGDIVLAR 122
Query: 151 I--HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVI 202
I ++ + +TL + + G++ G L+ + S + R S + G V
Sbjct: 123 IIDFNLTKDYPVTLTLKEARLGRIEGGTLVEIDASKVARVIGRRGSMVSIFSEELGCDVT 182
Query: 203 LGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT-----RLNNVIKALAESKVMLFDT 257
+G NG VW+ D F+ V+KL + E+ T R+ +++ KV +
Sbjct: 183 VGQNGRVWIRCRDPGDE-SFVA--RVIKLIESESHTSGLTDRVRSIVTQYKARKVSIKSQ 239
Query: 258 SIQYA 262
S+ A
Sbjct: 240 SLTTA 244
>gi|52550473|gb|AAU84322.1| conserved hypothetical protein [uncultured archaeon GZfos9D1]
Length = 228
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E G GT+ ++ ++ AS G+V + + + V +++ +Y+ G+VV+
Sbjct: 4 VVVPGDFLSE-ETKRAGEGTYVEEGKVYASQYGIVSERGE-IKVVSLSGKYMPSNGDVVI 61
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVN 120
G++T + W+V+ S E+ LH+++++
Sbjct: 62 GKITAISFPFWIVNLASPYEARLHVSALS 90
>gi|70606426|ref|YP_255296.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
DSM 639]
gi|449066638|ref|YP_007433720.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
N8]
gi|449068912|ref|YP_007435993.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364177|sp|Q4JB26.1|ECR1_SULAC RecName: Full=Probable exosome complex RNA-binding protein 1
gi|68567074|gb|AAY80003.1| conserved Archaeal KH domain protein [Sulfolobus acidocaldarius DSM
639]
gi|449035146|gb|AGE70572.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
N8]
gi|449037420|gb|AGE72845.1| exosome complex RNA-binding protein Rrp4 [Sulfolobus acidocaldarius
Ron12/I]
Length = 249
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 13/158 (8%)
Query: 79 NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMR 138
+SRY ++G+ ++G V ++ WV+D S S LP R + E +R
Sbjct: 64 SSRYYPKVGDTIIGLVEDIEIYGWVIDIKS-------FYSAYLPASSLLGRPISPGEDVR 116
Query: 139 EFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI------RRSKSHF 192
+L GD + A+I S L + G++ G ++ + P + RS
Sbjct: 117 RYLDVGDYVIAKIEAFDRTISPVLTVKGKGLGRIPLGTVMDIMPVKVPRVIGKNRSMIEV 176
Query: 193 CNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVK 230
G ++ + NG + + + I+ + +++
Sbjct: 177 LTSESGCEIFVAQNGRIHIKCANNLIEEALIEAINIIQ 214
>gi|255717512|ref|XP_002555037.1| exosome complex component RRP40 [Lachancea thermotolerans CBS 6340]
gi|238936420|emb|CAR24600.1| KLTH0F19558p [Lachancea thermotolerans CBS 6340]
Length = 236
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 31/205 (15%)
Query: 32 ILTPGETVEYL--EGYMTGHGTF--PDDEEIKASVGG--VVEKVNQLVSVRAMNS--RYI 83
++ PG+ ++ E + G G + P +EI+ G V+ + +S+R ++ RYI
Sbjct: 4 LIAPGDKLDIADKENVVIGPGVYCDPRTQEIRPVNAGFEVIGSTKKNLSIRVDHNSKRYI 63
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
+G++VVG +TG S + V S S + L+ + P ++ R LK
Sbjct: 64 PAVGDLVVGLITGSFSDSYRVSLAS-FSSPVTLSYMAFPNASKKNRPS---------LKV 113
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGK-LGQGIL---LTVPPSLIRRSKSHFCN----- 194
GDL+ A + + E + GK G G+L + SL + F N
Sbjct: 114 GDLVYARVCKADKELEAEIECVDSTTGKDAGFGLLDGGMVADVSLAFSRELTFNNEYPLL 173
Query: 195 --LACGAQ--VILGCNGYVWVSAID 215
LA AQ + +G NG VW+ D
Sbjct: 174 TLLAKNAQFEIAIGINGKVWIKCDD 198
>gi|340711298|ref|XP_003394215.1| PREDICTED: exosome complex component RRP40-like isoform 1 [Bombus
terrestris]
Length = 257
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 30/201 (14%)
Query: 32 ILTPGE------TVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVS-VRAMNSRYIG 84
++ PG+ T+ E + G G + + + A GV++K V V + RYI
Sbjct: 24 VVMPGDIIKDITTINKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKRYIP 83
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
GE VVG VT S + VD + +++L + G ++ R ++ G
Sbjct: 84 NRGENVVGIVTQRSSDIFKVDIGASEQASLSYLA--FEGATKKNRP---------DIQVG 132
Query: 145 DLISAEIHQISTEGSLTL-----HTRSLKYGKL-GQGILLTVPPSLIR----RSKSHFCN 194
DL+ A++ S + L H + K G L +G+L T SL+R R+ F
Sbjct: 133 DLVFAKLLVASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLVRKILNRNSLLFNT 192
Query: 195 LA--CGAQVILGCNGYVWVSA 213
LA +V +G NG VWV A
Sbjct: 193 LARSQAYEVAVGMNGRVWVKA 213
>gi|84490314|ref|YP_448546.1| exosome complex RNA-binding protein Csl4 [Methanosphaera stadtmanae
DSM 3091]
gi|84373633|gb|ABC57903.1| predicted RNA-binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 193
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGG--VVEKVNQLVSVRAMNSRYIGEIG 87
+ I+ PGE + E Y T+ D+ +K+S+ G V+ V + +SV + N+ ++G
Sbjct: 6 NEIVLPGEILCTYEEYTPFDWTYVDEGYVKSSIYGRVSVDDVEKTISVISRNAPKQIKVG 65
Query: 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE--EMMREFLKEGD 145
+ V+G VT +++ K ++ I+ S L V G V DE + + K GD
Sbjct: 66 DTVIGYVTDVKAHKVLITIKKIVGSNREL--VAAYKGYIHISKVSDEYNSTVYDLFKIGD 123
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGA 199
++ AE++ I + L T G + + ++ +K H CG
Sbjct: 124 IVEAEVNSILGPEYIELSTLQDNLGVIKA--MCVNCRKYMKLNKKHVLECECGT 175
>gi|350411956|ref|XP_003489500.1| PREDICTED: exosome complex component RRP40-like [Bombus impatiens]
Length = 269
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 30/201 (14%)
Query: 32 ILTPGETVEYL------EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVS-VRAMNSRYIG 84
++ PG+T++ + E + G G + + + A GV++K V V + RY+
Sbjct: 36 VVMPGDTIKDITTITKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKRYVP 95
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
GE VVG VT S + VD + +++ L+ + G ++ R ++ G
Sbjct: 96 NRGENVVGIVTQRSSDIFKVDIGASEQAS--LSYLAFEGATKKNRPD---------IQVG 144
Query: 145 DLISAEIHQISTEGSLTL-----HTRSLKYGKL-GQGILLTVPPSLIR----RSKSHFCN 194
DL+ A++ S + L H + K G L +G+L T SL+R R+ F
Sbjct: 145 DLVFAKLLVASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLVRKILNRNSLLFKT 204
Query: 195 L--ACGAQVILGCNGYVWVSA 213
L + +V +G NG VWV A
Sbjct: 205 LSRSQAFEVAVGMNGRVWVKA 225
>gi|73669983|ref|YP_305998.1| exosome complex RNA-binding protein Rrp4 [Methanosarcina barkeri
str. Fusaro]
gi|121731980|sp|Q469M4.1|ECR1_METBF RecName: Full=Probable exosome complex RNA-binding protein 1
gi|72397145|gb|AAZ71418.1| ribosomal RNA-processing protein RRP4 [Methanosarcina barkeri str.
Fusaro]
Length = 260
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 16/192 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + G+GT+ +++I + G+ V V + YI +VV+
Sbjct: 5 IVIPGDLISE-NSKKAGYGTYVKNDKIYSLFCGIENLKEDKVGVIPLAGVYIPSANDVVI 63
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G V + W++D S + H++ + R ++ E M E L GD I +
Sbjct: 64 GIVIVVTPSNWIMDIASPYDGLFHVS--------EYPRRIESRE-MHEVLNVGDSIILRV 114
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL------ACGAQVILGC 205
+ + L R + KL G ++ V P + R H ++ + +G
Sbjct: 115 KDVDNSMKVELALRDSSFHKLKTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQ 174
Query: 206 NGYVWVSAIDEN 217
NG +W+ D++
Sbjct: 175 NGRIWIDGKDDD 186
>gi|254566955|ref|XP_002490588.1| exosome complex component RRP40 [Komagataella pastoris GS115]
gi|238030384|emb|CAY68307.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328350975|emb|CCA37375.1| exosome complex component RRP40 [Komagataella pastoris CBS 7435]
Length = 232
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 34/207 (16%)
Query: 29 TDPILTPGETVEYL-EGYMTGHGTF--PDDEEIKASVGGVVE---KVNQLVSVRAMNSR- 81
T+ ++ PG+ ++ E + G G + P +EI + G++E K N+ V V S+
Sbjct: 2 TESLIVPGDRLDIKSENIILGPGFYVDPKTDEILPTNAGILEVSQKQNKTVYVIDSKSKT 61
Query: 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFL 141
YI + + V+G +TG + + V + ++A ++ P ++ R L
Sbjct: 62 YIPKTNDFVIGIITGTFGELYKVGLSEFTQAA-QMSVYAFPNASKKNRP---------HL 111
Query: 142 KEGDLISAEIHQISTEGSLTLHTRSLK--------YGKLGQGILLTVPPS-----LIRRS 188
K GD+I A + +S E + + + +G+L G L TV + L +
Sbjct: 112 KVGDVIYARV--LSAERDIEVELECIDPTTGKEGGFGQLEDGYLFTVNLAYARYLLFNEN 169
Query: 189 KSHFCNLA--CGAQVILGCNGYVWVSA 213
L C ++ +GCNG +W+ +
Sbjct: 170 AEILTELVKKCKFELAVGCNGRIWIKS 196
>gi|340711300|ref|XP_003394216.1| PREDICTED: exosome complex component RRP40-like isoform 2 [Bombus
terrestris]
Length = 244
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 30/201 (14%)
Query: 32 ILTPGE------TVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVS-VRAMNSRYIG 84
++ PG+ T+ E + G G + + + A GV++K V V + RYI
Sbjct: 11 VVMPGDIIKDITTINKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKRYIP 70
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
GE VVG VT S + VD + +++L + G ++ R ++ G
Sbjct: 71 NRGENVVGIVTQRSSDIFKVDIGASEQASLSYLA--FEGATKKNRP---------DIQVG 119
Query: 145 DLISAEIHQISTEGSLTL-----HTRSLKYGKL-GQGILLTVPPSLIR----RSKSHFCN 194
DL+ A++ S + L H + K G L +G+L T SL+R R+ F
Sbjct: 120 DLVFAKLLVASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLVRKILNRNSLLFNT 179
Query: 195 LA--CGAQVILGCNGYVWVSA 213
LA +V +G NG VWV A
Sbjct: 180 LARSQAYEVAVGMNGRVWVKA 200
>gi|403213304|emb|CCK67806.1| hypothetical protein KNAG_0A01170 [Kazachstania naganishii CBS
8797]
Length = 236
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 47/220 (21%)
Query: 11 EIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGV---VE 67
E++L D + IH+ IL PG + + P +E+ GV +E
Sbjct: 3 ELVLPGDSLG----IHDGVPVILGPGVSCD------------PMTQEVIPVNAGVRHYIE 46
Query: 68 KVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQR 127
K N V V RYI +G++V+G + + + V S +++ L+ ++ P ++
Sbjct: 47 KKNT-VYVDYNAKRYIPAVGDLVIGTIVSTFADSYKVSL-SDFSASVSLSYMSFPNATKK 104
Query: 128 RRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLK--------YGKLGQGILLT 179
R L+ GDL+ A + ++ E L + +G L G++++
Sbjct: 105 NRPT---------LQVGDLVYARV--LTAEKELEAEIECMDSVTGVHAGFGLLENGMVIS 153
Query: 180 VPPSLIRR-----SKSHFCNLA--CGAQVILGCNGYVWVS 212
VP S R + LA C ++ +G NG +WVS
Sbjct: 154 VPLSFARTLLFNDTFPLLSTLAQSCQFEIAIGINGRIWVS 193
>gi|374633083|ref|ZP_09705450.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Metallosphaera yellowstonensis MK1]
gi|373524567|gb|EHP69444.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Metallosphaera yellowstonensis MK1]
Length = 244
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
S Y ++G+ VVG V ++ W+ D + S LP R E +R
Sbjct: 65 SFYYPKVGDTVVGLVEDVELYGWMTDIKAPY-------SAYLPASSLLGRPANVGEDLRR 117
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV-P---PSLIRRSKSHFCNL 195
++ GD I A++ L + G++ GI++ + P P ++ + KS L
Sbjct: 118 YIDVGDYIIAKVDSFDRTTDPVLSVKGKGLGRVSSGIVIDIMPVKVPRVVGKGKSMLEML 177
Query: 196 AC--GAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITR-LNNVIKAL 247
G ++++ NG VW + + K I + + ++E+ T+ L + IK L
Sbjct: 178 ISETGCEILVAQNGRVWANCPSKEKENILIMAIRTI---EKESHTKGLTDRIKKL 229
>gi|444322370|ref|XP_004181828.1| hypothetical protein TBLA_0H00160 [Tetrapisispora blattae CBS 6284]
gi|387514874|emb|CCH62309.1| hypothetical protein TBLA_0H00160 [Tetrapisispora blattae CBS 6284]
Length = 240
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 31/221 (14%)
Query: 46 MTGHGTFPDDE-EIKASVGGVVEKVNQLVSVRAMN-----SRYIGEIGEVVVGRVTGLQS 99
+ G G D + +I V +E V Q +N +RYI +G+ V+G +TG
Sbjct: 23 LLGPGVVEDPQTQIITPVNAGIEVVTQTRKATTINIDYDSTRYIPAVGDYVIGIITGAFG 82
Query: 100 QKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGS 159
+ V S + + L+ + P ++ R LK GDL+ A + E
Sbjct: 83 DSYKVSLAS-FSNGVSLSYMAFPNATKKNRPT---------LKVGDLVYARVCSAEKELE 132
Query: 160 LTLHT------RSLKYGKLGQGILLTVPPSLIR-----RSKSHFCNLACGAQ--VILGCN 206
+ + +G L G+++ V S R S LA Q + +G N
Sbjct: 133 AEIECVDSTTGKDTGFGHLAGGMVIDVTLSFARNLLFNNDSSMLKILAKHTQFEIAIGVN 192
Query: 207 GYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKAL 247
G +WV A D + +++E + S + + ++IKA+
Sbjct: 193 GKIWVKAPDIKNTLACYKSIE--ECSKSKNSSEFPSIIKAI 231
>gi|380030285|ref|XP_003698781.1| PREDICTED: exosome complex component RRP40-like [Apis florea]
Length = 241
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 32 ILTPGETVEYL------EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVS-VRAMNSRYIG 84
++ PG+TV+ + E + G G + + + A G+++K V V + RY+
Sbjct: 8 VVMPGDTVKDITTINKKETIILGPGLRREADTVFAYKAGILKKTEPAVYYVDSYQKRYVP 67
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
GE VVG VT + VD + +++ L+ + G ++ R ++ G
Sbjct: 68 NRGEHVVGIVTQKGGDIFKVDIGASEQAS--LSYLAFEGATKKNRP---------DIQVG 116
Query: 145 DLISAEIHQISTEGSLTL-----HTRSLKYGKL-GQGILLTVPPSLIR----RSKSHFCN 194
DL+ A++ S + L H + K G L +G+L T SLIR R+ F
Sbjct: 117 DLVFAKLLVASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLIRKILNRNSPLFKT 176
Query: 195 LACGA--QVILGCNGYVWVSA 213
LA +V G NG VWV A
Sbjct: 177 LAHNQAFEVAAGMNGRVWVKA 197
>gi|124359808|gb|ABN06126.1| Nucleic acid-binding, OB-fold [Medicago truncatula]
Length = 138
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 73 VSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ 126
V VR++ SRY + G++V+GRV + +W +D N + + L+++N+P G Q
Sbjct: 42 VFVRSLLSRYKPKAGDIVIGRVIEVGQNRWRLDINCGQNAYMMLSAMNMPDGLQ 95
>gi|20090628|ref|NP_616703.1| exosome complex RNA-binding protein Rrp4 [Methanosarcina
acetivorans C2A]
gi|29336814|sp|Q8TPX7.1|ECR1_METAC RecName: Full=Probable exosome complex RNA-binding protein 1
gi|19915671|gb|AAM05183.1| RNA-binding protein [Methanosarcina acetivorans C2A]
Length = 260
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 15/177 (8%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
G+GT+ +++I +S+ G+ V V + YI +VV+G V + W+ D
Sbjct: 19 AGYGTYVKNDKIYSSLCGIENLKEDKVGVIPLAGAYIPSANDVVIGIVIVVTPSNWIFDI 78
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRS 166
+ + LH++ + R V+ EM E L GD + + + + + L R
Sbjct: 79 AAPYDGLLHVS--------EYPRRVESREMP-EILNVGDSVILRVKDVDSSMKVELALRD 129
Query: 167 LKYGKLGQGILLTVPPSLIRRSKSHFCNL------ACGAQVILGCNGYVWVSAIDEN 217
KL G ++ V + R H ++ + +G NG +W+ DE+
Sbjct: 130 PSLHKLKTGQIIKVESVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWIDGKDED 186
>gi|48135934|ref|XP_396758.1| PREDICTED: exosome complex exonuclease RRP40 [Apis mellifera]
Length = 241
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 32 ILTPGETVEYL------EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVS-VRAMNSRYIG 84
++ PG+T++ + E + G G + + + A G+++K V V + RY+
Sbjct: 8 VVMPGDTIKDITIINKKETIILGPGLRREADTVFAYKAGILKKTEPAVYYVDSYQKRYVP 67
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
GE VVG VT + VD + +++ L+ + G ++ R ++ G
Sbjct: 68 NRGEHVVGIVTQKGGDIFKVDIGASEQAS--LSYLAFEGATKKNRPD---------IQVG 116
Query: 145 DLISAEIHQISTEGSLTL-----HTRSLKYGKL-GQGILLTVPPSLIR----RSKSHFCN 194
DL+ A++ S + L H + K G L +G+L T SLIR R+ F
Sbjct: 117 DLVFAKLLVASKDMEPELVCVDSHGKEKKLGALSSEGMLFTCSLSLIRKILNRNSPLFKT 176
Query: 195 LACGA--QVILGCNGYVWVSA 213
LA +V G NG VWV A
Sbjct: 177 LAHNQAFEVAAGMNGRVWVKA 197
>gi|146302861|ref|YP_001190177.1| exosome complex RNA-binding protein Rrp4 [Metallosphaera sedula DSM
5348]
gi|145701111|gb|ABP94253.1| ribosomal RNA-processing protein RRP4 [Metallosphaera sedula DSM
5348]
Length = 247
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 18/196 (9%)
Query: 60 ASVGGVVEKVNQLVSVRAM-NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTS 118
ASV GVVE + + V + S Y IG+ V+ V ++ W D + S
Sbjct: 43 ASVIGVVEVKDSIFEVIPLEGSHYYPRIGDTVIALVEDVELYGWTTDIKAPY-------S 95
Query: 119 VNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILL 178
LP R E +R ++ GD + A++ L + G++ G ++
Sbjct: 96 AYLPASSLLGRPANVGEDLRRYIDVGDYVIAKVESFDRTSDPVLSVKGKGLGRVSSGTVI 155
Query: 179 TV-P---PSLIRRSKSHFCNLA--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLS 232
+ P P ++ + KS L+ G +++ NG V + + K I + +
Sbjct: 156 DILPVKVPRVVGKGKSMLETLSTETGCDILVAQNGRVLANCPSKEKENVLIMAIRTI--- 212
Query: 233 DRETITR-LNNVIKAL 247
+RE+ T+ L + IK L
Sbjct: 213 ERESHTKGLTDRIKKL 228
>gi|410083256|ref|XP_003959206.1| hypothetical protein KAFR_0I02920 [Kazachstania africana CBS 2517]
gi|372465796|emb|CCF60071.1| hypothetical protein KAFR_0I02920 [Kazachstania africana CBS 2517]
Length = 236
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 31/205 (15%)
Query: 32 ILTPGET--VEYLEGYMTGHGTF--PDDEEIKASVGGV----VEKVNQLVSVRAMNSRYI 83
++ PG+ ++ + G G + P + I+ G+ V K Q+V + + RY+
Sbjct: 4 LIVPGDKLDIDLTKNVSLGPGVYCDPRTQIIQPVNAGIENIQVGKRGQIVHIDYDSKRYV 63
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
+G+ VVG +TG + + V S S + L+ + P ++ R LK
Sbjct: 64 PAVGDFVVGIITGAFADSYRVSLAS-FSSPVSLSYMAFPNASKKNRPT---------LKI 113
Query: 144 GDLISAEIHQISTEGSLTLHT------RSLKYGKLGQGILLTVPPSLIRR----SKSHFC 193
GDL+ A + E + +S +G L G+++ V R K
Sbjct: 114 GDLVYARVCTAEKELEAEIECVDSTTGQSSGFGLLEGGMVMDVSLKFARNLLFDEKFPLL 173
Query: 194 NL---ACGAQVILGCNGYVWVSAID 215
L C ++ +G NG +W+ D
Sbjct: 174 RLLSQHCKFEIAIGVNGKIWIKTED 198
>gi|167045224|gb|ABZ09884.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG8O8]
Length = 228
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 17/222 (7%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRV 94
PG+ + + G+ D + I A+ G+ + + V V + Y+ +I ++V+ +
Sbjct: 13 PGDVITTAPLRLEGNVVL-DGKRIMATCMGLSDVSSDSVRVIPLAGVYLPKIDDLVLCTI 71
Query: 95 TGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154
+ + W D NS + L V R S E M+ L +GDL+ A I
Sbjct: 72 SLVSGNSWFADMNSCYQGMLLGQDVF------GRGSYPTMEEMKARLDKGDLVYARIANS 125
Query: 155 STEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGY 208
L GK+ G L+ + P+ I R S A A + +G NG
Sbjct: 126 DRMREPLLSIMGENLGKIDSGELIKISPTKIPRLIGKRGSMIQTIEAATNATITVGQNGL 185
Query: 209 VWVSAIDENKSGGFIQNMEVVKLSDRET-ITRLNNVIKALAE 249
V +D +S G ++ + +++ + + + L + +K + E
Sbjct: 186 V---VVDCEESDGLLKAVTAIRMVEEQAHLVDLTDKVKKMLE 224
>gi|167044150|gb|ABZ08832.1| hypothetical protein ALOHA_HF4000APKG5E24ctg1g3 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 219
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 60 ASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSV 119
++ G E + LV+V + Y + ++V+G++ + W VD NS L + +
Sbjct: 33 STATGFSEIKDDLVTVTPLTGLYTPKTDDLVIGKIVSHNALSWEVDINSYYSGILTASDI 92
Query: 120 NLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLT 179
G+ S D + LK GD+I A I +++ L T G++ G L+
Sbjct: 93 ---FGKDYSPSRDDLSLK---LKTGDIILARIANVNSRDPLITITGE-NLGRIDSGELIK 145
Query: 180 VPPSLIRR---SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKL 231
+ P+ I R S + A + +G NG + + + S G +++ +K+
Sbjct: 146 ISPTKIPRLTGSVIQTIEASTNATITVGQNGLIILKC---DNSTGLKKSIASIKM 197
>gi|67469469|ref|XP_650713.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56467363|gb|EAL45326.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 233
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 26/190 (13%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMN--SRYIGEIGEVVVG 92
PG+T EY++G G G + S G+++ Q + +Y + +V VG
Sbjct: 15 PGDTFEYVQGARFGDGIIKRNGVPTVSRAGILKYQQQTKYYHVFSDLKKYHPSVEDVCVG 74
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
++ K++VD S + L + ++S + L +GD + +
Sbjct: 75 KIVKRVKDKYLVDIGSYCYAELDFLAFE----NATKKS-------KPNLLDGDYVYCRV- 122
Query: 153 QISTEG---SLTLHTRSLK--YGKLGQGILLTVPPSLIRRSKSH-FCNLAC-----GAQV 201
+S E + + R ++ +G+L G +VP S+ RR C L C ++
Sbjct: 123 -VSKENVPQVVCVSQRKMEDGFGELQGGWAFSVPQSMCRRIMGDGCCVLTCIGEYTPFEI 181
Query: 202 ILGCNGYVWV 211
+G NG VWV
Sbjct: 182 AVGINGMVWV 191
>gi|167044508|gb|ABZ09183.1| hypothetical protein ALOHA_HF4000APKG6J21ctg1g48 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 219
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 70 NQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
+ LV+V + Y + ++V+G++ + W VD NS L + + G+
Sbjct: 43 DDLVTVTPLTGLYTPKTDDLVIGKIVSHNALSWEVDINSYYSGILTASDI---FGKDYSP 99
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR-- 187
S D + LK GD+I A I +++ L T GK+ G L+ + P+ I R
Sbjct: 100 SRDDLSLK---LKTGDIILARIANVNSRDPLITITGE-NLGKIDSGELIKISPTKIPRLT 155
Query: 188 -SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKL 231
S + A + +G NG + + + S G +++ +K+
Sbjct: 156 GSVIQTIEASTNATITVGQNGLIILKC---DNSTGLKKSIASIKM 197
>gi|449703223|gb|EMD43711.1| exosome complex exonuclease RRP40, putative [Entamoeba histolytica
KU27]
Length = 233
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 26/190 (13%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMN--SRYIGEIGEVVVG 92
PG+T EY++G G G + S G+++ Q + +Y + +V VG
Sbjct: 15 PGDTFEYVQGARFGDGIIKRNGVPTVSRAGILKYQQQTKYYHVFSDLKKYHPSVEDVCVG 74
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
++ K++VD S + L + ++S + L +GD + +
Sbjct: 75 KIVKRVKDKYLVDIGSYCYAELDFLAFE----NATKKS-------KPNLLDGDYVYCRV- 122
Query: 153 QISTEG---SLTLHTRSLK--YGKLGQGILLTVPPSLIRRSKSH-FCNLAC-----GAQV 201
+S E + + R ++ +G+L G +VP S+ RR C L C ++
Sbjct: 123 -VSKENVPQVVCVSQRKMEDGFGELQGGWAFSVPQSMCRRIMGDGCCVLTCIGEYTPFEI 181
Query: 202 ILGCNGYVWV 211
+G NG VWV
Sbjct: 182 AVGINGMVWV 191
>gi|255730389|ref|XP_002550119.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132076|gb|EER31634.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 270
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 106/271 (39%), Gaps = 50/271 (18%)
Query: 32 ILTPGET--VEYLEGYMT--GHGTF--PDDEEIKASVGGVVEKVN------QLVSVRAMN 79
I+TPG+ +E + T G G + P +E+ S G+ K++ QL+ + + +
Sbjct: 6 IITPGDNLPIEDITSVKTTIGPGIYKKPKTQELIPSTSGIFHKISNNSKNSQLIYIESNS 65
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
RYI + V+G + G + + V +L S+ + G V + R
Sbjct: 66 KRYIPHNNDFVIGLIIGTIGENYKV--------SLQANSIPILLG--FYSFVNASKKNRP 115
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGIL----------LTVPPSLIRRSK 189
LK GDL+ I E + + G G+L + L+
Sbjct: 116 ILKNGDLVYGRIINDIIEIDNEMECIDSSGKESGFGLLDDSGFLFDVNMNFARELLFNKN 175
Query: 190 SHFCN---LACGAQVILGCNGYVWV---------SAIDENKSGGFIQNMEVVKLSDRETI 237
S F L C ++ +G NG +W+ + + N + G ++ E+ + + + +
Sbjct: 176 SIFLELLALKCKFEIAIGINGKIWIKCGNGIQKKDSDNNNNTNGDEEDQEMKDVGEDDVV 235
Query: 238 TRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
L N + A+ F T QY ++ LK
Sbjct: 236 KDLKNTMAAVK------FLTRCQYVTQDKLK 260
>gi|367008036|ref|XP_003688747.1| exosome complex component RRP40 [Tetrapisispora phaffii CBS 4417]
gi|357527057|emb|CCE66313.1| hypothetical protein TPHA_0P01550 [Tetrapisispora phaffii CBS 4417]
Length = 237
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 58 IKASVGGVVE-KVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHL 116
+ A + VVE K Q V V RYI +G+ V+G +TG ++ V ++ +++ L
Sbjct: 37 VAAGMLNVVETKRGQTVYVDYNTKRYIPAVGDFVIGTITGAYGDRYKVSLSN-FSNSVSL 95
Query: 117 TSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLK-------- 168
+ + P ++ R LK GDL A I S E L +
Sbjct: 96 SYMAFPNASKKNRPT---------LKVGDLAYARI--CSAEKELEAEIECMDSSTGVDSG 144
Query: 169 YGKLGQGILLTVPPSLIRR--SKSHFCNLACGA-----QVILGCNGYVWV 211
+G L G+++ RR + F L A ++ +G NG VWV
Sbjct: 145 FGSLENGMVIETKLPFARRLLFDNDFPLLQLLAKHTKFEIAIGLNGVVWV 194
>gi|32476921|ref|NP_869915.1| regulatory protein afsR [Rhodopirellula baltica SH 1]
gi|32447469|emb|CAD79058.1| probable regulatory protein afsR [Rhodopirellula baltica SH 1]
Length = 1146
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIG---EV 89
L PGE + + Y+ H F D++ K +Q + + G++ EV
Sbjct: 245 LYPGEPIHAI--YIQEHADFDRDDDHPQRSWFETLKRHQFLDAKPWWPD--GQVALQREV 300
Query: 90 VVGRVTGLQSQKW--VVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLI 147
V GR+ GL+ + W V D SI S +LT+ N+ + R S Q M+R + I
Sbjct: 301 VTGRLQGLRKKIWNQVCDVRSIQNSPTNLTAFNINFVGRERESTQLWNMLR--MDHVTAI 358
Query: 148 SAEIHQISTEGSLTL-----HTRSLKY--GKLGQGILLTVPPSLIRRSKSHFCNLACGAQ 200
SA I + G L HTR +Y G+ G+ +R NL GA
Sbjct: 359 SA-IQGVGGLGKTALARAFAHTRRREYLGGQFEIGMEKVTSADQLRLEIVQLANLYLGAS 417
Query: 201 V 201
+
Sbjct: 418 I 418
>gi|190344709|gb|EDK36442.2| hypothetical protein PGUG_00540 [Meyerozyma guilliermondii ATCC
6260]
Length = 249
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 42/235 (17%)
Query: 55 DEEIKASVGGVVEKVNQ-----LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSI 109
D + S G V +K+N+ L+ V + + RYI ++ + V+G VTG+ + + V
Sbjct: 30 DNVVPVSAGIVHDKINKQGTNRLLYVDSNSKRYIPQVNDFVIGIVTGVIGEAYKVSLQG- 88
Query: 110 LESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST--EGSLTLHTRSL 167
S++ L+ + P ++ R LK G + A + + + E + S
Sbjct: 89 FSSSVSLSMMAFPNANKKNRPN---------LKNGQAVYARVTKAMSEIESEIECMDSSG 139
Query: 168 KYGKLG----QGILLTVPPSLIRR-SKSHFCNL------ACGAQVILGCNGYVW------ 210
K G G G++ V R SH + C ++ +G NG +W
Sbjct: 140 KEGGFGVLSESGLIFEVNLHYARDLLFSHNSPILEKLSSKCKFEIAIGINGKIWIKCGEG 199
Query: 211 -VSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYE 264
V ++E++ E + D +T + IK A+S FD ++ A++
Sbjct: 200 LVDVVNEDQD-------EATMIHDMKTTLAASRYIKNCAKSAPEDFDRQLKEAFK 247
>gi|406602832|emb|CCH45608.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 232
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 25/194 (12%)
Query: 35 PGETVEYLEGYMTGHGTF--PDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
P + + + G G + P ++ I G++ + + + + RYI + + V+G
Sbjct: 12 PSHSTDQNSQLIIGPGIYVNPINKSIIPINSGLLNHQANSLYIESNSRRYIPQQNDFVIG 71
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
+V G + V S +++ L+S+ P ++ R +K G+L+ A +
Sbjct: 72 KVIGSFGDVFKVSL-SNFSNSVSLSSMAFPNATKKNRPN---------IKNGNLVYARVS 121
Query: 153 QISTEGSLTLHT------RSLKYGKLGQGILLTVPPSLIR----RSKSHFCN---LACGA 199
+ E L + +G L G LL V S R + N C
Sbjct: 122 NANKEIDTELECIDPTTGKDGGFGLLEGGYLLEVSLSFARFLLFNPQCQILNELVKKCKF 181
Query: 200 QVILGCNGYVWVSA 213
++ +GCNG +W+ +
Sbjct: 182 EIAIGCNGLIWIKS 195
>gi|146422450|ref|XP_001487163.1| hypothetical protein PGUG_00540 [Meyerozyma guilliermondii ATCC
6260]
Length = 249
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 42/235 (17%)
Query: 55 DEEIKASVGGVVEKVNQ-----LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSI 109
D + S G V +K+N+ L+ V + + RYI ++ + V+G VTG+ + + V
Sbjct: 30 DNVVPVSAGIVHDKINKQGTNRLLYVDSNSKRYIPQVNDFVIGIVTGVIGEAYKVSLQGF 89
Query: 110 LESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST--EGSLTLHTRSL 167
S L L+ + P ++ R LK G + A + + + E + S
Sbjct: 90 SSSVL-LSMMAFPNANKKNRPN---------LKNGQAVYARVTKAMSEIESEIECMDSSG 139
Query: 168 KYGKLG----QGILLTVPPSLIRR-SKSHFCNL------ACGAQVILGCNGYVW------ 210
K G G G++ V R SH + C ++ +G NG +W
Sbjct: 140 KEGGFGVLSESGLIFEVNLHYARDLLFSHNSPILEKLSSKCKFEIAIGINGKIWIKCGEG 199
Query: 211 -VSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYE 264
V ++E++ E + D +T + IK A+S FD ++ A++
Sbjct: 200 LVDVVNEDQD-------EATMIHDMKTTLAASRYIKNCAKSAPEDFDRQLKEAFK 247
>gi|401623722|gb|EJS41810.1| rrp40p [Saccharomyces arboricola H-6]
Length = 240
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 53 PDDEEIKASVGGVVEKVN------QLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
P+ +E++ G++ Q + + RY+ +G+ V+G +TG S + V
Sbjct: 29 PNSQEVRPVNTGILHVSTKGKSGVQAAYIDYSSKRYVPSVGDFVIGTITGTFSDSYKVSL 88
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT-- 164
+ S++ L+ + P ++ R L+ GDL+ A ++ E +
Sbjct: 89 QN-FSSSVSLSYMAFPNASKKNRPT---------LQVGDLVYARVYTAEKELEAEVECVD 138
Query: 165 ----RSLKYGKLGQGILLTVPPSLIRR--SKSHFCNLACGA-----QVILGCNGYVWV 211
R +G L GI++ V + R+ F L A ++ +G NG +W+
Sbjct: 139 STTGRDAGFGLLEDGIIIDVSLNFARQLLFNDEFPLLKVLAAHAKFEIAIGLNGKIWI 196
>gi|305663456|ref|YP_003859744.1| RNA-binding S1 domain-containing protein [Ignisphaera aggregans DSM
17230]
gi|304378025|gb|ADM27864.1| RNA-binding S1 domain-containing protein [Ignisphaera aggregans DSM
17230]
Length = 187
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 70/131 (53%), Gaps = 21/131 (16%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEK--VNQLVSVRAMNSRYIGEIGEV 89
I+ PGE + E YM GT+ ++ ++A++ G V+ +N+ + ++++ S I + G++
Sbjct: 8 IVLPGEKLCVEEEYMPSIGTYSEEGIVRAAIIGRVQYDIINRRIYIKSIKSPVIPKAGDI 67
Query: 90 VVGRVTGLQSQKWVV-----DTNSILESA----LHLTSVNLPGGEQRRRSVQDEEMMREF 140
V+G V ++ + + DTN++ + + LH++ + E R ++ D
Sbjct: 68 VIGVVEQMRDELATINIIGYDTNNLFKHSFTGILHISQAS----ETRIPTLYD------V 117
Query: 141 LKEGDLISAEI 151
++ GD+I A++
Sbjct: 118 IRVGDIIRAKV 128
>gi|50554611|ref|XP_504714.1| YALI0E33121p [Yarrowia lipolytica]
gi|49650583|emb|CAG80318.1| YALI0E33121p [Yarrowia lipolytica CLIB122]
Length = 295
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 49 HGTFPDDEEIKASVGGVVEKVNQ-LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTN 107
H T P+D++ K NQ LV + + RYI + + V+G VT ++ + V
Sbjct: 103 HRTDPEDKKTK----------NQNLVYIDSDTRRYIPAVNDNVIGTVTTRHAEGYKVSV- 151
Query: 108 SILESALHLTSVNLPGGEQRRRS--VQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
S L + L ++ P ++ R D + + AEI I + +
Sbjct: 152 SDLSPGVQLNAMAFPNASKKNRVNLANDALVYARVSSASREVEAEIECIDPQSG-----K 206
Query: 166 SLKYGKLGQGILLTVPPSLIRR--SKSHFCNLACGA----QVILGCNGYVWVSAID 215
+ YG+L G P + R+ K H G ++ +G NG +WV + D
Sbjct: 207 AGGYGELKDGFCFDAPIAFTRQLLFKGHTVLDTIGELVPFEIAIGVNGKIWVKSED 262
>gi|17507825|ref|NP_492751.1| Protein EXOS-3 [Caenorhabditis elegans]
gi|3877902|emb|CAB01875.1| Protein EXOS-3 [Caenorhabditis elegans]
Length = 226
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 60 ASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSV 119
A+ G + V + + RYI + G+ V+ VT + +D + + ++ T
Sbjct: 34 ATQPGAFHNDDGKVWLNVHSKRYIPQEGDRVIAIVTSKTGDFFRLDIGTAEYAMINFT-- 91
Query: 120 NLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIS--TEGSLTL---HTRSLKYGKLGQ 174
N G +R R LK GD+I A + + TE LT R+ G+L
Sbjct: 92 NFEGATKRNRPN---------LKTGDIIYATVFDTTPRTEAELTCVDDEKRARGMGQLNG 142
Query: 175 GILLTVPPSLIRRSKSHFCNL--ACGA----QVILGCNGYVWVSA 213
G + V + RR + C + G ++ +G NG +W+SA
Sbjct: 143 GFMFKVSLNHCRRLINPSCKILQTVGKFFKFEITVGMNGRIWISA 187
>gi|159485988|ref|XP_001701026.1| 3'-5' exonuclease component of the exosome [Chlamydomonas
reinhardtii]
gi|158281525|gb|EDP07280.1| 3'-5' exonuclease component of the exosome [Chlamydomonas
reinhardtii]
Length = 231
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 55 DEEIKASVGGVVE--KVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILES 112
D + + GGV++ + QL + RYI G+VVVG ++ S+ + VD +
Sbjct: 35 DGAVTSLKGGVLKSTRTGQLF-LEGRQKRYIPAEGDVVVGVISDKHSENFTVDIGGPFNA 93
Query: 113 ALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT-----RSL 167
L S G RR R L GDL+ A + + L R+
Sbjct: 94 VLPQLSFE---GATRRN--------RPNLHPGDLVYARVVTAHRDTDPVLSCMDSAGRAS 142
Query: 168 KYGKLGQGILLTVPPSLIRR-----SKSHFCNLACGAQ--VILGCNGYVWVSA 213
+G L +G++L+ +L R+ + L G Q + +G NG VW+SA
Sbjct: 143 GFGHLKEGMVLSCSSALARQLLGSPTAPVLEALGSGLQFELAVGLNGRVWLSA 195
>gi|312385541|gb|EFR30016.1| hypothetical protein AND_00665 [Anopheles darlingi]
Length = 234
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 19/192 (9%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKAS-VGGVVEKVNQLVSVRAMNSRYIGEIGE 88
D I+ P E ++ + + G G D + ++AS G + K V A RY+ GE
Sbjct: 10 DVIIEPMEMIKTSKKVILGPGLRMDQDVVRASKCGQLKTKPPNTFWVDAHQKRYVPTRGE 69
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR---SVQDEEMMREFLKEGD 145
+VVG V + VD S L+ V G ++ R ++ D R + D
Sbjct: 70 LVVGVVMAKAGDIFRVDIGS--SETASLSYVAFEGATKKNRPDVNIGDIVYARLLIAHPD 127
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLACGA--- 199
+ E+ + + H + K G L G LL+ +LIR+ K F +L
Sbjct: 128 -VEPELVCVDS------HGKKGKLGILHDGFLLSCSLNLIRKILNPKCTFLSLLSKELKF 180
Query: 200 QVILGCNGYVWV 211
++ G NG +W+
Sbjct: 181 ELAAGMNGRLWI 192
>gi|383865315|ref|XP_003708120.1| PREDICTED: exosome complex component RRP40-like [Megachile
rotundata]
Length = 241
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 30/201 (14%)
Query: 32 ILTPGETVEYL------EGYMTGHGTFPDDEEIKASVGGVVEKVNQLVS-VRAMNSRYIG 84
++ PG+TV+ + E + G G + + + A G+++K V V RYI
Sbjct: 8 VVMPGDTVKDITTVNKKETIILGPGLRREADTVFAYKAGILKKAEPAVYYVDTYQKRYIP 67
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
GE VVG VT + VD + +++L + G ++ R ++ G
Sbjct: 68 NRGENVVGIVTQKGGDIFKVDIGASDQASLSYLA--FEGATKKNRP---------DIQVG 116
Query: 145 DLISAEIHQISTEGSLTL-----HTRSLKYGKLGQ-GILLTVPPSLIRR---SKSHFCNL 195
DL+ A++ S + L H + G L G+L T SLIR+ KS
Sbjct: 117 DLVYAKLLVASKDMESELVCVDSHGKEKNLGVLSNDGMLFTCSLSLIRKILNQKSPLFKT 176
Query: 196 ACGAQ---VILGCNGYVWVSA 213
+Q V G NG VWV A
Sbjct: 177 LANSQAFEVAAGMNGRVWVKA 197
>gi|321469195|gb|EFX80176.1| hypothetical protein DAPPUDRAFT_304185 [Daphnia pulex]
Length = 242
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 79 NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMR 138
+ RY+ G+ V+G VT + + V+ S E++ L+S+ PG ++ +
Sbjct: 69 HKRYVPARGDDVIGVVTNKVGESYKVNIGSSEEAS--LSSIAFPGATKKN---------K 117
Query: 139 EFLKEGDLISAE--IHQISTEGSLTLHTRSLKYGKLG----QGILLTVPPSLIRRSKSHF 192
++ GDL+ A+ I I E L + LG G L TVP IR+ +
Sbjct: 118 PNIQIGDLVFAKLLIASIDMEPELVCVNSLGENVGLGVLSTSGFLFTVPLHHIRKLLNPE 177
Query: 193 CNL------ACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRL 240
C L A ++ +G NG +W+ A ++ + + + + ++E + +L
Sbjct: 178 CTLLKSLGKALSFEIAVGMNGKIWIKAKSVKQTIALARAISISEHMNKEEMNKL 231
>gi|124511936|ref|XP_001349101.1| 3'-5' exoribonuclease Csl4 homolog, putative [Plasmodium falciparum
3D7]
gi|23498869|emb|CAD50947.1| 3'-5' exoribonuclease Csl4 homolog, putative [Plasmodium falciparum
3D7]
Length = 195
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGG--VVEKVNQ---LVSVRAMN--SRY 82
D I+ PGE + Y+ G+ T+ +EI++S+ G ++ K N ++SV + S Y
Sbjct: 7 DDIVIPGEFLGLQAEYINGNNTYLLKDEIRSSILGQKIINKNNDKKTIISVYNLKPPSLY 66
Query: 83 IGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR-SVQDEEMMREFL 141
+ +IG++V+ +V Q + + IL S T L G + + + E+ F+
Sbjct: 67 LPKIGDIVICKV---QRVSFHMIYCYILSSHNIFTKNALKGFILKSDIHINEGELGDNFI 123
Query: 142 --KEGDLISAEIHQISTEGSLTLHT 164
K+GD+I A++ I S L T
Sbjct: 124 CFKQGDIIKAKVLSIGQYSSYKLST 148
>gi|341883776|gb|EGT39711.1| hypothetical protein CAEBREN_17988 [Caenorhabditis brenneri]
Length = 226
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 32 ILTPGETVE---YLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
+ PG+ ++ + +TG+G ++ ++ G V + + RYI + G+
Sbjct: 3 VYLPGDVIDEPSSSDSLITGYGINLRGQQKVSTQPGAFRNDGGKVWLNVHSKRYIPQEGD 62
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
V+ VT + +D + + ++ T N G +R R LK GD+I
Sbjct: 63 RVIAIVTSKTGDFFRLDIGTAEFAIINFT--NFEGATKRNRPN---------LKTGDIIY 111
Query: 149 AEIHQIS--TEGSLTL---HTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL--ACGA-- 199
A + + TE LT R+ G+L G + V + RR + C + G
Sbjct: 112 ATVFDTTPRTEAELTCVDDEKRARGMGQLNGGYMFKVSLNHCRRLINPSCKILQTTGKFF 171
Query: 200 --QVILGCNGYVWVSA 213
++ +G NG +W++A
Sbjct: 172 KFEITVGMNGRIWINA 187
>gi|410722285|ref|ZP_11361591.1| putative RNA-binding protein (consists of S1 domain and a Zn-ribbon
domain) [Methanobacterium sp. Maddingley MBC34]
gi|410597320|gb|EKQ51947.1| putative RNA-binding protein (consists of S1 domain and a Zn-ribbon
domain) [Methanobacterium sp. Maddingley MBC34]
Length = 189
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVV---EKVNQLVSVRAMNSRYIGEIGEVVV 91
PG+ + E ++ T+ D EI++ V G V +K ++ + S I + G+VV+
Sbjct: 11 PGDALGVTEEFLPSEWTYDDHGEIRSLVAGTVTIDQKNKKISIIPKAKSPAILKKGDVVL 70
Query: 92 GRVTGLQSQKWVVDTNSILES--ALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
G++ ++ Q+ +VD I +S +L +T + Q R+ D+ + + GDLI A
Sbjct: 71 GQIRDVRGQRALVDVEGIKDSKRSLPVTFLGAIHISQARKGYVDK--LTDDFHIGDLIQA 128
Query: 150 EIHQISTEGSLTLHTRSLKYGKL 172
+ ++ + L T + G L
Sbjct: 129 RVTKVMGVDNADLTTAETELGVL 151
>gi|340052148|emb|CCC46419.1| putative protein kinase [Trypanosoma vivax Y486]
Length = 1801
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 20/116 (17%)
Query: 55 DEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESAL 114
+E ++ +G ++VN+L +A N R E GE + G V N ++E L
Sbjct: 921 NEVLRPQLGAFQKRVNEL---KAKNWRMSAEDGETLSGHVEAC---------NQLMERYL 968
Query: 115 HLTSVNLPGGEQRRRSVQDEEMMREFLKE--------GDLISAEIHQISTEGSLTL 162
LTS+N+ + + + V+ ++R+F +E G+ IS ++ T+G L +
Sbjct: 969 RLTSLNMESMDTQWKPVRLRNVIRQFSREVIQQVQKSGNTISTDVDSSVTKGELFM 1024
>gi|341883788|gb|EGT39723.1| CBN-EXOS-3 protein [Caenorhabditis brenneri]
Length = 226
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 25/196 (12%)
Query: 32 ILTPGETVE---YLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGE 88
+ PG+ ++ + +TG+G ++ ++ G V + + RYI + G+
Sbjct: 3 VYLPGDVIDEPSSSDSLITGYGINLRGQQKVSTQPGAFRNDGGKVWLNVHSKRYIPQEGD 62
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
V+ VT + +D + + ++ T N G +R R LK GD+I
Sbjct: 63 RVIAIVTSKTGDFFRLDIGTAEFAIINFT--NFEGATKRNRPN---------LKTGDIIY 111
Query: 149 AEIHQIS--TEGSLTL---HTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL------AC 197
A + + TE LT R+ G+L G + V + RR + C +
Sbjct: 112 ATVFDTTPRTEAELTCVDDEKRARGMGQLNGGYMFKVSLNHCRRLINPSCKILQTIGKFF 171
Query: 198 GAQVILGCNGYVWVSA 213
++ +G NG +W++A
Sbjct: 172 KFEITVGMNGRIWINA 187
>gi|414584981|tpg|DAA35552.1| TPA: hypothetical protein ZEAMMB73_927289 [Zea mays]
Length = 526
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS--RYIGEIGEVVVGRVTGLQSQKWV 103
+ GHGT D E+ A++ GVVE+VN+LV VR + + R+ E+ G + ++ WV
Sbjct: 47 LKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRASCRFSMEMN----GVLQAADAKYWV 102
>gi|308081851|ref|NP_001183320.1| uncharacterized protein LOC100501721 [Zea mays]
gi|238010760|gb|ACR36415.1| unknown [Zea mays]
Length = 526
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS--RYIGEIGEVVVGRVTGLQSQKWV 103
+ GHGT D E+ A++ GVVE+VN+LV VR + + R+ E+ G + ++ WV
Sbjct: 47 LKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRASCRFSMEMN----GVLQAADAKYWV 102
>gi|305663897|ref|YP_003860185.1| exosome complex RNA-binding protein Rrp4 [Ignisphaera aggregans DSM
17230]
gi|380876877|sp|E0SQX5.1|ECR1_IGNAA RecName: Full=Probable exosome complex RNA-binding protein 1
gi|304378466|gb|ADM28305.1| exosome complex RNA-binding protein Rrp4 [Ignisphaera aggregans DSM
17230]
Length = 253
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 75 VRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQD- 133
V + RYI G++V+G V + W++D NS S L+ + RS
Sbjct: 68 VIPLKGRYIPREGDIVIGIVVDVTLSSWIIDINSPYLSVLN-------ASDYLGRSFNPL 120
Query: 134 EEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKS 190
+ +R++L+ GD++ +I L + GK+ G L+ + P + R K
Sbjct: 121 TDNIRKYLEIGDVVVGKIATFDRSRGPILTVQDKGLGKVVDGSLIEIEPIKVARVIGKKK 180
Query: 191 HFCNL---ACGAQVILGCNGYV 209
N+ +++G NG +
Sbjct: 181 SMLNMLIEQTKCDILVGNNGRI 202
>gi|340345569|ref|ZP_08668701.1| RNA-binding protein (Consists of S1 domain and a Zn-ribbon
domain)-like protein [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520710|gb|EGP94433.1| RNA-binding protein (Consists of S1 domain and a Zn-ribbon
domain)-like protein [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 183
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVE--KVNQLVSVRAMNSRYIGEIGEVVVG 92
PG+ + +E Y TG+ TF D + ++AS G E K ++ +++ I ++G++++G
Sbjct: 8 PGDKIASIEEYETGYNTFDDGDMVRASTVGKTELDKEARVANIKHPKMISIPKVGDIIIG 67
Query: 93 RVTGLQSQKWVVDTNSI 109
V + S V + I
Sbjct: 68 TVAAVMSSMIAVSIDYI 84
>gi|156937370|ref|YP_001435166.1| RNA-binding protein [Ignicoccus hospitalis KIN4/I]
gi|156566354|gb|ABU81759.1| RNA-binding protein (consists of S1 domain and a Zn-ribbon
domain)-like protein [Ignicoccus hospitalis KIN4/I]
Length = 192
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 28/145 (19%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVV--EKVNQLVSVRAMNS-RYIGEIGE 88
++ PG+ + +E Y G GT+ DD ++AS+ G V + VN ++ VR ++ + + E
Sbjct: 9 VVAPGDPLCVIEEYAPGPGTYEDDGIVRASIPGTVRIDTVNYVIEVRGPSAEKKVLSPKE 68
Query: 89 VVVGRVTGLQSQ----KWVVDTNSILE-----SALHLTSVNLPGGEQRRRSVQDEEMMRE 139
VV G V ++++ K + + + LH++ P + + +
Sbjct: 69 VVYGEVVSMRNELAQLKVARSFDEVFRARAFSAVLHISQAGKP-----------VDSLYD 117
Query: 140 FLKEGDLISAEI-----HQISTEGS 159
++ GD++ A++ +Q+S +G
Sbjct: 118 VVRPGDVVKAKVLSSPPYQLSLKGP 142
>gi|159040950|ref|YP_001540202.1| exosome complex RNA-binding protein Rrp4 [Caldivirga maquilingensis
IC-167]
gi|157919785|gb|ABW01212.1| KH type 1 domain protein [Caldivirga maquilingensis IC-167]
Length = 240
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 73 VSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQ 132
V V +N Y G++V+G V + W +D S + L + L + V
Sbjct: 55 VQVIPLNGAYKPRQGDIVIGYVIDILVNGWEIDIKSPYSAYLPINEATL-----KPVDVV 109
Query: 133 DEEMMREFLKEGDLISAEI--HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR--- 187
+ +R L GD++ A+I ++ + +TL + + G++ G ++ + P + R
Sbjct: 110 TAD-LRNILNIGDIVLAKISDFNLAKDYPVTLTIKESRLGRIEDGTVIEIDPVKVPRVIG 168
Query: 188 SKSHFCNL---ACGAQVILGCNGYVWV 211
+ N+ V +G NG +WV
Sbjct: 169 KRGSMVNMFKDELNCDVTVGQNGRIWV 195
>gi|347524280|ref|YP_004781850.1| KH domain containing protein [Pyrolobus fumarii 1A]
gi|343461162|gb|AEM39598.1| KH domain protein [Pyrolobus fumarii 1A]
Length = 238
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 19/227 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+L G VE Y+ G + + +++ G+ + + V + YI + G++V+
Sbjct: 17 LLAEGPDVEPASPYVEKRG-----DRLYSTILGLADVQENKIGVIPLEGPYIPKPGDIVI 71
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G + + W VD + + L R + ++++R + + GD I A++
Sbjct: 72 GLIVDVGVTHWEVDIRAPYTAILTAQE-----ALDRPFNPATDDLLR-YYQIGDYIVAKV 125
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLAC---GAQVILGC 205
L + GK+ G ++ + PS + R K+ N+ G +++G
Sbjct: 126 TSFDRTHDPYLTVKGKGLGKIVTGSIVEIKPSRVPRVIGKKASMVNMLVSLTGCNIVVGQ 185
Query: 206 NGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
NG + V D++ + + + K+ I L + ++A E ++
Sbjct: 186 NGRILVQCRDKDLEEVLV--LAIKKIEREAHIPGLTDRVRAFIEEEL 230
>gi|327401580|ref|YP_004342419.1| RNA-binding domain, S1 [Archaeoglobus veneficus SNP6]
gi|327317088|gb|AEA47704.1| RNA-binding domain, S1 [Archaeoglobus veneficus SNP6]
Length = 182
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
+ PG+ + +E Y+TG G + ++ EI A+V G V ++ VSV + G+VV+
Sbjct: 5 FVMPGDRIGLVEEYVTGSGVYEENGEIFAAVAGKVVVKDRTVSVEPVKRIPHINKGDVVL 64
Query: 92 GRVTGLQSQKWVVD---TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
GRV +++ +++ S +H L +R ++D + E ++ D+I
Sbjct: 65 GRVVDVRNSMALIELARKKGFDRSLMHTGIAALHVSNVQRDYLKD---INEAIRYMDIIK 121
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACG 198
A + I E +L L T+ + G L + + L+R + C CG
Sbjct: 122 ARV--IDAE-NLKLSTKEPEMGVL-KSLCSVCKHELVREGNTLKCP-NCG 166
>gi|408380976|ref|ZP_11178526.1| RNA-binding protein [Methanobacterium formicicum DSM 3637]
gi|407816241|gb|EKF86803.1| RNA-binding protein [Methanobacterium formicicum DSM 3637]
Length = 189
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVV---EKVNQLVSVRAMNSRYIGEIGEVVV 91
PG+ + E ++ T+ D EI++ V G V +K ++ + S I + G+VV+
Sbjct: 11 PGDALGVTEEFLPSEWTYDDHGEIRSLVAGTVTIDQKNKKISIIPKTKSPAILKKGDVVL 70
Query: 92 GRVTGLQSQKWVVDTNSILES--ALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
G++ ++ Q+ +VD I S +L +T + Q R+ D+ + + GDLI A
Sbjct: 71 GQIRDVRGQRALVDVEGIKNSKRSLPITFLGAIHISQARKGYVDK--LTDDFHIGDLIQA 128
Query: 150 EIHQISTEGSLTLHTRSLKYGKL 172
+ ++ + L T + G L
Sbjct: 129 RVTKVMGVDNADLTTAETELGVL 151
>gi|344232284|gb|EGV64163.1| hypothetical protein CANTEDRAFT_114211 [Candida tenuis ATCC 10573]
Length = 247
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 33/206 (16%)
Query: 33 LTPGETVEYLEGYMT-GHGTF--PDDEEIKASVGGVV------EKVNQLVSVRAMNSRYI 83
+ PG+ ++ + T G G + P + I + G + + NQL + + + RYI
Sbjct: 3 IVPGDALDIQQMKTTIGPGVYKNPKTQNIIPAAAGYLNVKINKKNTNQLAYIESKSKRYI 62
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
+ + VVG VTG + + V + L L+ + P ++ R LK
Sbjct: 63 PKANDFVVGIVTGTIGESYKVSLQDFSANVL-LSMMAFPNATKKNRPN---------LKV 112
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLG-------QGILLTVPPS-----LIRRSKSH 191
G ++ A + Q E + + GK G G + V + L S +
Sbjct: 113 GQVVYARVSQDIPEIDIEIECIDPATGKEGGFGMLDESGYIFEVGLNYANELLFNPSSVY 172
Query: 192 FCNLA--CGAQVILGCNGYVWVSAID 215
LA C +V +G NG +W+ D
Sbjct: 173 LEKLASKCKFEVAIGLNGKIWIKCGD 198
>gi|124027455|ref|YP_001012775.1| exosome complex RNA-binding protein Rrp4 [Hyperthermus butylicus
DSM 5456]
gi|123978149|gb|ABM80430.1| predicted RNA binding protein Rrp4 [Hyperthermus butylicus DSM
5456]
Length = 239
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 12/147 (8%)
Query: 73 VSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQ 132
VS+ + YI G++V+G V + W VD S + L + V R
Sbjct: 57 VSIIPLEGAYIPRPGDIVIGLVRDIGLTHWEVDIASPYKGILTVQEV------LDRPFNP 110
Query: 133 DEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SK 189
+ ++++L GD I A+I L + G++ +G ++ + PS + R K
Sbjct: 111 ATDSLKKYLDVGDYIVAKIVAFDRARDPLLTIKGKGLGRIVEGSIVEIKPSRVPRVIGKK 170
Query: 190 SHFCNLA---CGAQVILGCNGYVWVSA 213
N+ G +V++G NG + V
Sbjct: 171 GSMVNMIMQETGCEVLVGQNGRILVKC 197
>gi|384501277|gb|EIE91768.1| hypothetical protein RO3G_16479 [Rhizopus delemar RA 99-880]
Length = 189
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVV----EKVNQLVSVRAMNSR---YIGE 85
+TPG+ + Y Y+ G GT+ D + ASV G K QL ++R + + E
Sbjct: 8 VTPGQRLGYAADYIQGPGTYERDGLLYASVVGHKYIDQSKNEQLPTIRVSKEKEQSAVPE 67
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
+G V+ G+V + + + + E+ + + + R + +D+ + + GD
Sbjct: 68 VGSVITGKVIRVAPHQATIAIMVVGETPCKEDFMGVIRTQDVRAAEKDKVKIYNSFRPGD 127
Query: 146 LISAEIHQISTEGSLTLHT 164
++ A++ + S L T
Sbjct: 128 IVKADVISLGDARSYVLST 146
>gi|158297117|ref|XP_317396.3| AGAP008063-PA [Anopheles gambiae str. PEST]
gi|157015041|gb|EAA12694.3| AGAP008063-PA [Anopheles gambiae str. PEST]
Length = 214
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 32 ILTPGETV-EYLEGYMTGHGTFPDDEEIKASVGGVVE----KVNQLVSVRAMNS-RYIGE 85
I PG+ + E + G GT+ I A++ G+V+ + N +SV + +
Sbjct: 14 ICVPGQILCAASEFTVAGQGTYEKLGYIHATLAGIVQMKKREKNTFISVVSFGGGATVPV 73
Query: 86 IGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
IG++V R+T +Q++ I ++AL+ T + E R + D M + + GD
Sbjct: 74 IGDIVTARITAVQNRMARCRILCIGKTALNRTLRGIIRKEDVRATEVDRVEMHKCFRPGD 133
Query: 146 LISAEI-HQI 154
+I A + HQI
Sbjct: 134 IILARVLHQI 143
>gi|321468012|gb|EFX78999.1| hypothetical protein DAPPUDRAFT_319933 [Daphnia pulex]
Length = 188
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 23/172 (13%)
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREF 140
+Y+ G+ V+G VT + + V+ S E++L +S+ PG ++ +
Sbjct: 17 KYVPARGDDVIGVVTNKVGESYKVNIGSSEEASL--SSIAFPGATKKNKP---------N 65
Query: 141 LKEGDLISAE--IHQISTEGSLTLHTRSLKYGKLG----QGILLTVPPSLIRRSKSHFCN 194
++ GDL+ A+ I I E L + LG G L TVP IR+ + C
Sbjct: 66 IQIGDLVFAKLLIASIDMEPELVCVNSLGENVGLGVLSTSGFLFTVPLHHIRKLLNPECT 125
Query: 195 L------ACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRL 240
L A ++ +G NG +W+ A ++ + + + + ++E + +L
Sbjct: 126 LLKSLGKALSFEIAVGMNGKIWIKAKSVKQTIALARAISISEHMNKEEMNKL 177
>gi|194332723|ref|NP_001123851.1| exosome component 1 [Xenopus (Silurana) tropicalis]
gi|189441871|gb|AAI67725.1| LOC100170616 protein [Xenopus (Silurana) tropicalis]
Length = 194
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGG-VVEKVNQ-----LVSVRAMNSRYIGEIGE 88
PGE + E G+GTF I AS+ G +V+K + + VR +S + ++G
Sbjct: 9 PGERLCSTEDCAPGYGTFCRHGYIFASLAGYIVKKTDNGLMPVISVVRETDSHLLPDVGS 68
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
VV +VT + S+ V I + L T E R + +D+ + + + GD++
Sbjct: 69 VVTCKVTSINSRFAKVQIMYIGSTPLSNTFRGTIRKEDIRATEKDKVEVYKSFRPGDIVM 128
Query: 149 AEI 151
A++
Sbjct: 129 AKV 131
>gi|326428875|gb|EGD74445.1| hypothetical protein PTSG_05810 [Salpingoeca sp. ATCC 50818]
Length = 264
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 62 VGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNL 121
V G + + +V V ++ R + G+ V+G +TG + + VD + LH ++
Sbjct: 76 VPGDLRRKGNMVWVDGVHKRALPAEGDYVIGIITGTPGENYNVDIGGSCNATLH--NLAF 133
Query: 122 PGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST--EGSLT-LHT--RSLKYGKLGQGI 176
G +R R LK GDL+ A + + E LT +H ++ G L G
Sbjct: 134 EGATKRNRP---------RLKVGDLVYARVQLMHKYMEPELTCVHASGKAQGMGLLEGGF 184
Query: 177 LLTVPPSLIRRSKSHFCNL--ACGA----QVILGCNGYVWVSAIDENKSGGFIQNMEVVK 230
L + L R S C + A GA ++ +G NG VW A ++ + + ++
Sbjct: 185 LFEISLGLSRTLLSRGCAVLHALGAELPFEITIGRNGRVWAKAARACET---MLVVNAIR 241
Query: 231 LSDRETITRLNNVIKALAE 249
S+R + ++K +A
Sbjct: 242 ASERLSAKHTRELVKEMAR 260
>gi|68475021|ref|XP_718396.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|68475558|ref|XP_718127.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|46439883|gb|EAK99195.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|46440161|gb|EAK99470.1| likely exosome component Rrp40p [Candida albicans SC5314]
Length = 270
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 41/212 (19%)
Query: 29 TDPILTPGETVEYLEGYMT-----GHGTF--PDDEEIKASVGGVVE------KVNQLVSV 75
+D I+ PG+ + E T G G + P +E+ S G++ QL+ +
Sbjct: 2 SDTIILPGDKLPIDEDIFTVKTTIGPGIYKKPKTQELIPSAAGILHYERAKSSSQQLIYI 61
Query: 76 RAMNSRYIGEIGEVVVGRVTGL--QSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQD 133
+ + RYI + V+G +TG +S K + +NS + + L+ P ++ R
Sbjct: 62 ESNSKRYIPHTNDYVIGIITGAIGESYKVSLQSNS---TPVLLSFWAFPNASKKNRPN-- 116
Query: 134 EEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQ-GIL----------LTVPP 182
LK G + A + Q E L GK G G+L L
Sbjct: 117 -------LKNGQAVYARVSQDIPEIETELECIDPTSGKEGGFGVLDESGYIFDVHLNFAR 169
Query: 183 SLIRRSKSHFC-NLA--CGAQVILGCNGYVWV 211
L+ K+ F LA C ++ +G NG +W+
Sbjct: 170 ELLFNPKTIFLETLATRCQFEIAIGINGKIWI 201
>gi|297184126|gb|ADI20245.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 711
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 24/149 (16%)
Query: 27 EFTDPILTPGETVEYLEGYMTGHGTFP-----DDE---EIKASVGGVVEKVNQLVSVRAM 78
EF PI+ PG + ++G GT DD EI +++K +++ A
Sbjct: 566 EFIGPIIGPGG--KNIQGIQADTGTTVTISEVDDRGHVEISGKDAAMMDKALEMIRAIAF 623
Query: 79 NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMR 138
EIGEV G V G+Q+ V+ ++ LH++ ++ R ++V+D
Sbjct: 624 EP----EIGEVYEGIVRGVQTYGAFVEIAPKVQGLLHISEIDW----TRIKNVED----- 670
Query: 139 EFLKEGDLISAEIHQISTEGSLTLHTRSL 167
LKEGD + ++ ++ G + L + L
Sbjct: 671 -VLKEGDTVKVKLLEVDKAGKMKLSRKVL 698
>gi|442759049|gb|JAA71683.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp40
[Ixodes ricinus]
Length = 227
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 29/200 (14%)
Query: 32 ILTPGETVEY----LEGYMTGHGTFPDDEEIKASVGGVVEKVNQ-LVSVRAMNSRYIGEI 86
++ PG+TV+ + Y+ G G D E I A+ G++++ + V RY+
Sbjct: 6 LVLPGDTVDISASDKKKYVLGPGLRKDGERIIATRAGILKQRSPGTYWVEGRQKRYVPAR 65
Query: 87 GEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
G+ V+G VT ++ V+ S + +L + + G +R R ++ GDL
Sbjct: 66 GDCVIGIVTAKSAENIRVNIGSSEQGSLSMFA--FEGATKRN---------RPDVQVGDL 114
Query: 147 ISAEIHQIS--TEGSLTLHTRSLKYGKLG-----QGILLTVPPSLIRRSKSHFCNL--AC 197
+ A++ + E L K G LG + +P L+ R C L +
Sbjct: 115 VMAQVLTANRDMEPELVCVNSYGKKGILGVLRSPTAFWMRLPIDLVNRVLCKDCPLLGSL 174
Query: 198 GAQVI----LGCNGYVWVSA 213
G ++ LG NG VWV+A
Sbjct: 175 GRRIPFEISLGQNGRVWVNA 194
>gi|237830329|ref|XP_002364462.1| hypothetical protein TGME49_112400 [Toxoplasma gondii ME49]
gi|211962126|gb|EEA97321.1| hypothetical protein TGME49_112400 [Toxoplasma gondii ME49]
gi|221487539|gb|EEE25771.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221507332|gb|EEE32936.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 275
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 27/158 (17%)
Query: 75 VRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE 134
+R RY G+VVVG V+G +++ + V+ + + +L L S + G +R +
Sbjct: 92 IRGSQKRYEPVEGDVVVGIVSGKKNEAYTVNIRARGDGSLPLVS-SFEGATRRHKPE--- 147
Query: 135 EMMREFLKEGDLISAEIHQISTE--GSLTLHTRSLK---------YGKLGQGILLTVPPS 183
L+ G LI + + S E LT + K G+L G +L VP
Sbjct: 148 ------LRRGSLILCRVERASPELGAELTCIDPNCKKSWTSQEKLLGELEGGFVLDVPAP 201
Query: 184 LIRRSKSHFCNL------ACGAQVILGCNGYVWVSAID 215
L S C L ++ G NG VW+ A D
Sbjct: 202 LAISLSSPHCFLLESLGERLAFEIASGANGRVWIRAKD 239
>gi|148225176|ref|NP_001086901.1| exosome component 1 [Xenopus laevis]
gi|50415689|gb|AAH77633.1| MGC86284 protein [Xenopus laevis]
Length = 194
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQ------LVSVRAMNSRYIGEIGE 88
PGE + E G+GTF I AS+ G + K + + VR +S + ++G
Sbjct: 9 PGERLCSTEDCAPGYGTFCRHGYIFASLAGYIVKKSDNGLMPIISVVRDTDSHLLPDVGS 68
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
VV +VT + S+ V I + L T E R + +D+ + + + GD++
Sbjct: 69 VVTCKVTSINSRFAKVQIMYIGSTPLRNTFRGTIRKEDIRATEKDKVEVYKSFRPGDIVM 128
Query: 149 AEI 151
A++
Sbjct: 129 AKV 131
>gi|9758066|dbj|BAB08645.1| unnamed protein product [Arabidopsis thaliana]
Length = 145
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
Query: 28 FTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVV-------EKVNQLVSVRAMNS 80
T ++TPG+ + + G G + +D I AS+ G E ++Q V
Sbjct: 1 MTTGLVTPGDVIGKATEFKAGKGAYVNDATIYASLTGTCRIVSPLPESIDQRAIVEVTGH 60
Query: 81 RYIG---EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMM 137
+ G E G VV+ RVT + ++ VD + A+ + + R + D+ M
Sbjct: 61 KAHGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDM 120
Query: 138 REFLKEGDLISAEI 151
+ GD++ A +
Sbjct: 121 HQSFHAGDIVRAMV 134
>gi|14601413|ref|NP_147950.1| exosome complex RNA-binding protein Rrp4 [Aeropyrum pernix K1]
gi|29337016|sp|Q9YC02.1|ECR1_AERPE RecName: Full=Probable exosome complex RNA-binding protein 1
gi|160286342|pdb|2Z0S|A Chain A, Crystal Structure Of Putative Exosome Complex Rna-Binding
Protein
gi|5105132|dbj|BAA80446.1| exosome complex RNA-binding protein Rrp4 homologue [Aeropyrum
pernix K1]
Length = 235
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFL 141
Y+ + G+VV+G + + W VD NS + L + G +V D M+ L
Sbjct: 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFL---GRPFNPAVDD---MQSLL 115
Query: 142 KEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR 187
K GD I A++ S L + G++ +G ++ + P+ + R
Sbjct: 116 KVGDYIKAKVVAFDKTRSPLLTVQGEGLGRIVRGKIVEISPAKVPR 161
>gi|167044979|gb|ABZ09644.1| hypothetical protein ALOHA_HF4000APKG8G2ctg1g34 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 219
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 64 GVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPG 123
G E + LV+V + Y + ++V+G++ + W VD NS L + +
Sbjct: 37 GFSEIKDDLVTVTPLTGLYTPKTDDLVIGKIVSHNALSWQVDINSYYSGILTASDI---F 93
Query: 124 GEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSL-TLHTRSLKYGKLGQGILLTVPP 182
G+ S D + LK GD+I A I +++ L T+ +L GK+ G L+ +
Sbjct: 94 GKDYSPSRDDLSLK---LKTGDIILARIANVNSRDPLITIIGENL--GKIDSGELIKISS 148
Query: 183 SLIRR---SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKL 231
+ I R S + A + +G NG + + + S G +++ +K+
Sbjct: 149 TKIPRLTGSVIQTIEASTNATITVGQNGLIILKC---DNSTGLKKSIASIKM 197
>gi|407463186|ref|YP_006774503.1| RNA-binding protein [Candidatus Nitrosopumilus koreensis AR1]
gi|407046808|gb|AFS81561.1| RNA-binding protein [Candidatus Nitrosopumilus koreensis AR1]
Length = 183
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGV--VEKVNQLVSVRAMNSRYIGEIGEVVVG 92
PGE + +E Y G+ F D + ++A+ G ++K + +++ I ++G+VV+G
Sbjct: 8 PGEKIASIEEYEAGYNAFDDGDMVRAATIGEKDIDKTTRTANIKHPKDLSIPKVGDVVIG 67
Query: 93 RVTGLQSQKWVVDTNSI 109
V + S V + I
Sbjct: 68 TVAAVMSSMIAVSIDYI 84
>gi|332798196|ref|YP_004459695.1| RNA binding S1 domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438001115|ref|YP_007270858.1| RNA binding protein, contains ribosomal protein S1 domain
[Tepidanaerobacter acetatoxydans Re1]
gi|332695931|gb|AEE90388.1| RNA binding S1 domain protein [Tepidanaerobacter acetatoxydans Re1]
gi|432177909|emb|CCP24882.1| RNA binding protein, contains ribosomal protein S1 domain
[Tepidanaerobacter acetatoxydans Re1]
Length = 131
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
E+G+++ GRVTG+ V+ + + +H++ V + + V D FLKE
Sbjct: 4 EVGQILEGRVTGITKFGAFVEISEGVTGLVHISEV----ADSFVKDVND------FLKEN 53
Query: 145 DLISAEIHQISTEGSLTLHTRSLK 168
D+I ++ IS++G ++L R K
Sbjct: 54 DIIKVKVISISSDGKVSLSIRKTK 77
>gi|386876031|ref|ZP_10118172.1| hypothetical protein BD31_I0665 [Candidatus Nitrosopumilus salaria
BD31]
gi|386806174|gb|EIJ65652.1| hypothetical protein BD31_I0665 [Candidatus Nitrosopumilus salaria
BD31]
Length = 183
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGG--VVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
PG+ + +E Y G TF D + ++A+ G V++K + S++ I +G++V+G
Sbjct: 8 PGDKLASIEEYEAGFNTFDDGDMVRAATVGESVLDKETRTASIKHPKMLSIPRVGDIVIG 67
Query: 93 RVTGLQSQKWVVDTNSI 109
V + S V + I
Sbjct: 68 TVAAVMSSMIAVSIDYI 84
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,435,734,747
Number of Sequences: 23463169
Number of extensions: 173503965
Number of successful extensions: 488337
Number of sequences better than 100.0: 672
Number of HSP's better than 100.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 487046
Number of HSP's gapped (non-prelim): 741
length of query: 298
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 157
effective length of database: 9,050,888,538
effective search space: 1420989500466
effective search space used: 1420989500466
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)