BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10116
(298 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13868|EXOS2_HUMAN Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2
Length = 293
Score = 300 bits (768), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 200/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RYIGE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>sp|Q2KID0|EXOS2_BOVIN Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1
Length = 293
Score = 300 bits (768), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 142/263 (53%), Positives = 200/263 (76%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++WV
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWV 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V L+DRE I+RL N I +LA ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEDDAGGFIANLEPVSLTDREVISRLRNCIVSLATQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++V+ T Q+L
Sbjct: 266 HQIKDILKPEIMEEIVMETRQRL 288
>sp|Q8VBV3|EXOS2_MOUSE Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=2 SV=1
Length = 293
Score = 298 bits (763), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 198/263 (75%), Gaps = 3/263 (1%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY GE+G++VV
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V LSDRE I+RL N + L ++MLFDTSI Y YE SL
Sbjct: 206 YPTPEHKDEDAGGFIANLEPVALSDREVISRLRNCVVLLVTQRMMLFDTSILYCYEASLA 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE +++L T Q+L
Sbjct: 266 HQIKDILKPEVMEEIMLETRQRL 288
>sp|Q09704|RRP4_SCHPO Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rrp4 PE=3 SV=1
Length = 329
Score = 207 bits (526), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 165/277 (59%), Gaps = 22/277 (7%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++TPG+ V +M GHGT+ +D I ASV G V++VN+L+SV+ + S+Y+ EIG++++
Sbjct: 57 LVTPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLII 116
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ +Q ++W VD + + L L+S+NLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 117 GKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEV 176
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
Q ++GS+++HTRSLKYGKL G+ L VPP+L+ RSKSH LA G +IL NGYVWV
Sbjct: 177 QQYFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAGGVDIILSVNGYVWV 236
Query: 212 SAIDENKSGGFIQNMEVVKLSD------------------RETITRLNNVIKALAESKVM 253
S +EN+ ++ + +L + R I+R++ IK LA +
Sbjct: 237 SKHNENQHS----SVSITRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLASRSLP 292
Query: 254 LFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQK 290
L SI YE SL +S L +D + A +
Sbjct: 293 LTQASITNFYESSLVFSNLQDLTVPKNMDQIAMEAMQ 329
>sp|P38792|RRP4_YEAST Exosome complex component RRP4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP4 PE=1 SV=1
Length = 359
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 41/305 (13%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + RY E G+ VV
Sbjct: 54 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVV 113
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
GR+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL++AE+
Sbjct: 114 GRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEV 173
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG NGY+W+
Sbjct: 174 QSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWL 233
Query: 212 ------------------SAIDENKSGGFIQ-NMEVVKLSD------------------- 233
S+I G + N + +L +
Sbjct: 234 RKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIYSDENDPSISNNI 293
Query: 234 RETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLV---LCTAQK 290
R+ I R NVIKALA ++ + I AYE S+ YS L ++ ++ + + TA+K
Sbjct: 294 RQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEK 353
Query: 291 LQTLG 295
++ G
Sbjct: 354 MRGNG 358
>sp|Q9V120|ECR1_PYRAB Probable exosome complex RNA-binding protein 1 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06090 PE=3 SV=1
Length = 265
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 110/223 (49%), Gaps = 30/223 (13%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GTF + I ++V G+V+ + V + YI E+G+ V+G++ ++ WVV
Sbjct: 23 YKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MREFLKEGDLISAEIHQISTEG 158
D + + L + + DE++ +R+F GD+I A++ I+
Sbjct: 83 DIGAPYPANLKI------------QDFTDEKIDLLRTDLRKFFDIGDIIYAKVKAITEVN 130
Query: 159 SLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVW 210
++ L T+ + + G L G ++ + PS + R S + ++I+G NG++W
Sbjct: 131 NIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIW 190
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRETITR-LNNVIKALAESKV 252
VS ++ I+ ++K+ D+E+ TR L + IKAL S++
Sbjct: 191 VSGKNDALEKLAIE--AILKI-DKESHTRGLTDRIKALLLSRL 230
>sp|Q5JIR5|ECR1_PYRKO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1635 PE=3 SV=1
Length = 257
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
+ G GTF + I ++V G+VE ++ V + YI E+G+ V+G++ ++ W V
Sbjct: 23 FKNGRGTFREGNAIYSTVIGLVEIRGNVIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D + +++L + E+R ++ + +R+ GD+I A++ + + L T
Sbjct: 83 DIGAPYQASLRVQDAV----EERIDLLKTD--LRKIFDIGDIIYAKVKAFNEVNQIDLTT 136
Query: 165 RSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVWVSA 213
+ + + G L G L+T+ PS + R S + G ++I+G NG+VWVS
Sbjct: 137 KGMPFKGGPLRGGQLVTITPSKVPRLIGKGGSMINMIKTLTGTRIIVGQNGWVWVSG 193
>sp|Q6L222|ECR1_PICTO Probable exosome complex RNA-binding protein 1 OS=Picrophilus
torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 /
NBRC 100828) GN=PTO0395 PE=3 SV=1
Length = 230
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE ++ LEG +G + +++E + GVV+K ++ + + N Y+ I + V+
Sbjct: 6 IVYPGEKID-LEGQKPRNGLYEENDEYYSEYFGVVQKSDKFIDIVPFNGPYMPRINDKVI 64
Query: 92 GRVTGLQSQKWVVDTNSILESALHL--TSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149
G+V + + W VD NS S +H+ T ++ G+ +R++L GD I A
Sbjct: 65 GKVIDVSATMWTVDINSPYFSLMHMNDTPWHVTSGD-----------LRKYLNVGDYIYA 113
Query: 150 EIHQIS--TEGSLTLHTRSLKYGKLGQGILLTVP--PSLIRRSKS--HFCNLACGAQVIL 203
++ ++ E L+L +L+ + G I + P P +I ++ + + ++I+
Sbjct: 114 KVSILNEIKESWLSLKDVNLRKLEEGSIIYIKAPKVPRVIGKAGNMINMIKSETNTKIIV 173
Query: 204 GCNGYVWVSAIDEN 217
G NG +W+ EN
Sbjct: 174 GQNGLIWIDGEPEN 187
>sp|O59221|ECR1_PYRHO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH1551 PE=3 SV=1
Length = 265
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 30/223 (13%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GTF + I ++V G+V+ + V + YI E+G+ V+G++ ++ WVV
Sbjct: 23 YKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MREFLKEGDLISAEIHQISTEG 158
D A +L ++ + + DE++ +R+F GD+I ++ I+
Sbjct: 83 DI-----GAPYLANLKI-------QDFTDEKIDLLRTDLRKFFDIGDIIYGKVKAITEVN 130
Query: 159 SLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVW 210
++ L T+ + + G L G ++ + PS + R S + ++I+G NG++W
Sbjct: 131 NIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIW 190
Query: 211 VSAIDENKSGGFIQNMEVVKLSDRETITR-LNNVIKALAESKV 252
V+ +E I+ ++K+ DRE+ T+ L + IK+L S++
Sbjct: 191 VNGKNEALEKLAIE--AILKI-DRESHTKGLTDRIKSLLLSRL 230
>sp|Q8U0L8|ECR1_PYRFU Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1569 PE=3 SV=1
Length = 264
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 108/230 (46%), Gaps = 44/230 (19%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GTF + I ++V G+V+ + V + YI E+G+ V+G++ ++ W V
Sbjct: 23 YKNGRGTFKEGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTV 82
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEM------MREFLKEGDLISAEIHQISTEG 158
D S + L + + DE++ +R+F GD+I A++ I+
Sbjct: 83 DIGSPYSATLKI------------QDYTDEKIDLLRTDLRKFFDIGDIIYAKVKGINEVN 130
Query: 159 SLTLHTRSLKY--GKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGCNGYVW 210
++ L T+ + + G L G ++ + S + R S + +++I+G NG++W
Sbjct: 131 NIELTTKGMPFNGGPLRGGQIIKITSSKVPRVIGKGGSMINMIKKLTQSRIIVGQNGWIW 190
Query: 211 VSAIDENKSGGFIQNMEVVKLS-------DRETITR-LNNVIKALAESKV 252
+S+ +N E+ KL+ +RE+ TR L + IK + SK+
Sbjct: 191 ISS----------KNPELEKLAIEAILKIERESHTRGLTDRIKNMLLSKL 230
>sp|A5UJS0|ECR1_METS3 Probable exosome complex RNA-binding protein 1
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=Msm_0243 PE=3 SV=1
Length = 298
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PGE + E Y +G GTF ++ +I +S+ G+V N+ + V + S+Y+ + G+VV+
Sbjct: 9 LVIPGEVLADDE-YYSGRGTFKENGKICSSLMGLVSLRNKKIRVIPLKSKYVPKKGDVVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ ++ W VD NS LP E R +++ + + GD++ +
Sbjct: 68 GKIKDVRFSMWDVDINSPYSGI-------LPAFEVFGR---EKKELNKVFDVGDVLFLRV 117
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILGC 205
+ + L + GK GI++ + P+ + R K N+ ++I+G
Sbjct: 118 VDVDEVKKVKLGLKGRGMGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCKIIVGQ 177
Query: 206 NGYVWVSA 213
NG VWV
Sbjct: 178 NGLVWVKG 185
>sp|O26780|ECR1_METTH Probable exosome complex RNA-binding protein 1
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_684 PE=3 SV=1
Length = 311
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + E Y G GTF +D I +S G+V N+ ++V + S+YI + G+VV+
Sbjct: 9 LVVPGQVLAENE-YFPGRGTFKEDNRICSSFVGLVSVRNKKINVIPLQSKYIPKRGDVVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRR-RSVQDEEMMREFLKEGDLISAE 150
G +T ++ W +D NS L + V G ++R SV D + + L L+
Sbjct: 68 GEITDIRFSMWGLDINSPYTGLLPASEVF--GKDKRELESVFD---IVDVL----LLRVV 118
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLA---CGAQVILG 204
+ L L R L GK GIL+ + P+ + R + N+ +++G
Sbjct: 119 DVDEVKKVKLGLKGRGL--GKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVG 176
Query: 205 CNGYVWVSA 213
NG VW+
Sbjct: 177 QNGVVWIKG 185
>sp|D5U396|ECR1_THEAM Probable exosome complex RNA-binding protein 1 OS=Thermosphaera
aggregans (strain DSM 11486 / M11TL) GN=Tagg_1335 PE=3
SV=1
Length = 247
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 21/215 (9%)
Query: 32 ILTPGETVEYLE--GYMTGHGTFPD------DEEIKASVGGVVEKVNQLVSVRAMNSRYI 83
++ PG+ + Y+E G + PD D +I + + GVV + + V + YI
Sbjct: 12 LVRPGDILAYIEEAGEVVKFKKIPDKHVYIFDNKIISDLVGVVNVSGEDIQVIPLEGVYI 71
Query: 84 GEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKE 143
++V+G V + W +D S L+ + V E + + +R +L
Sbjct: 72 PRKDDLVIGIVENVGVTAWTLDIRSPYPGVLNASEVI----EGFNPLIHN---LRNYLDT 124
Query: 144 GDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---AC 197
GD + I + + GK+ +G+++ V PS I R + NL
Sbjct: 125 GDFVIGRIALFDRTRDPVITVKGKGLGKITEGVVVDVKPSKIPRLIGKRGSMYNLLTSMS 184
Query: 198 GAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLS 232
G ++ + NG+VW+ DEN++ IQ +++++L
Sbjct: 185 GCEITIAQNGFVWLKCHDENRAKVLIQAIKLIELK 219
>sp|A1RXQ7|ECR1_THEPD Probable exosome complex RNA-binding protein 1 OS=Thermofilum
pendens (strain Hrk 5) GN=Tpen_0582 PE=3 SV=1
Length = 237
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 16/237 (6%)
Query: 23 IEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVV--EKVNQLVSVRAMNS 80
+ IH I+ PGE V + F + + V GVV ++ N++V V +
Sbjct: 6 VTIHVKDRQIVAPGEFVGEQGRFRVEGQVFRVGRKYYSKVLGVVTVDEENRVVKVIPLKG 65
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREF 140
+Y G +VVG+V + W VD NS + L ++ V R ++ E+ R
Sbjct: 66 KYFPVEGHIVVGKVVDIGFTSWEVDINSPYVAVLPVSEVT-----SRPVTISRNELSR-I 119
Query: 141 LKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLAC--- 197
L GDLI A+I L + + GK+ +G L+ +PP + R ++
Sbjct: 120 LDVGDLILAKIVSFDLSKDPVLTIKESRLGKIPRGTLVEIPPQKVPRVIGRRGSMVSMIE 179
Query: 198 ---GAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESK 251
G ++I+G NG + V D + I + V K+ T L + IK E +
Sbjct: 180 DLLGVKLIVGQNGRIVVVGDDPQRVE--IAVLAVRKIEAEAHTTGLTDRIKQFIEER 234
>sp|E3GZ90|ECR1_METFV Probable exosome complex RNA-binding protein 1 OS=Methanothermus
fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24
S) GN=Mfer_0823 PE=3 SV=1
Length = 222
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PGE + + Y+ G GTF ++++I +SV G+V + + V + +YI + + V+
Sbjct: 9 IVVPGEKLAGND-YIAGRGTFIEEDKIYSSVVGLVSIKGKRIEVIPLQGKYIPKKNDSVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G+V ++ +W+VD S + L ++ V G ++ + E GD + +I
Sbjct: 68 GKVVDVKFARWIVDIRSPYSAILPVSEVIDKG----------KKNLEEIFGIGDTLFLKI 117
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR------SKSHFCNLACGAQVILGC 205
++ + L KL G L + PS + R S +++LG
Sbjct: 118 IEVDEVKKVKLGLHEGGPIKLEGGTLAYITPSKVPRVIGRKGSMIKMLKKLTNCEILLGQ 177
Query: 206 NGYVWVSA 213
NG +WV
Sbjct: 178 NGVIWVKG 185
>sp|Q2NEX6|ECR1_METST Probable exosome complex RNA-binding protein 1 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_1250 PE=3 SV=1
Length = 222
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 45 YMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVV 104
Y G GT+ ++ +I +S+ G+V ++ + V + Y G++V+GRVTG W +
Sbjct: 21 YKLGRGTYKENGKIYSSITGLVYFESEQIKVIPLKDTYSPNYGDLVIGRVTGSSYSSWSI 80
Query: 105 DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
D NS L T + + ++M+ + D EI+++ LTL +
Sbjct: 81 DINSTYHGFLPTTELYDKNEPNINNIINIKDMLLLRVANVD----EINRV----KLTLRS 132
Query: 165 RSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQ------VILGCNGYVWVSAI 214
R L GK QG ++ V I L Q VI+G NG +W++ +
Sbjct: 133 RGL--GKFNQGTIIKVKQPTIHFLSEENAFLTTMIQEYTYTDVIIGKNGLIWINGL 186
>sp|Q9HIP3|ECR1_THEAC Probable exosome complex RNA-binding protein 1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=Ta1292 PE=3 SV=1
Length = 236
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 29/233 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ +E ++G M D + G ++ +Q V V + +YI G+ V+
Sbjct: 10 IVLPGDPIE-VQGKMRNGVYRGQDNRYYSEYFGTLQVNDQFVDVVPFSGQYIPRKGDKVI 68
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G+V + W VD NS + LH+ R S D ++ +L GD I A+I
Sbjct: 69 GKVIEVGPSTWTVDINSPYFAMLHMNDTPW------RMSSGD---LKRYLNAGDYIYAKI 119
Query: 152 HQIS--TEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLA---CGAQVIL 203
++ E LTL LK KL G ++ + S + R N+ ++I+
Sbjct: 120 MSVNEIKESWLTLKEPGLK--KLEGGHMVLIHASRVPRVIGKGGGMVNMVKELTATRIII 177
Query: 204 GCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT-----RLNNVIKALAESK 251
G NG +W+ E G + +++ +RE T R+ + +K L K
Sbjct: 178 GQNGLIWIDGPIE----GVTMAIAAIEMIEREAHTEGLTARVESFLKELKGEK 226
>sp|Q8TYC0|ECR1_METKA Probable exosome complex RNA-binding protein 1 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0382 PE=3 SV=1
Length = 239
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 21 PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS 80
P E++ ++TPGE + + + GT+ +E+ + V G+V+ + + V +
Sbjct: 2 PEFELYVEDRQVVTPGELLARGQ-VIASEGTYTSGDEVYSKVTGLVDIDGRRIRVIPLAG 60
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM---- 136
Y G+ VVG V ++ W++D + L + LH++ + +EE+
Sbjct: 61 PYRPSPGDFVVGIVEEVKFSSWLIDVRAPLPAILHVS------------NALEEEVDLIE 108
Query: 137 --MREFLKEGDLISAEIHQIS----TEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR--- 187
+ + + GD+I+A + ++ E SL + G+L G ++ + P + R
Sbjct: 109 TDLSRYYRPGDVITAVVREVDPVQRVELSLLEDDAPTRLGRLQGGQVVEIDPVKVPRVIG 168
Query: 188 ---SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITR-LNNV 243
S G +++G NG ++V A +E K + + ++ +R + R L +
Sbjct: 169 RKGSMIKMLKRVLGCDIVVGANGRIYVRAREEPKKERELLAVRAIREIERRSHLRGLTDW 228
Query: 244 IKA 246
+KA
Sbjct: 229 LKA 231
>sp|Q97BZ6|ECR1_THEVO Probable exosome complex RNA-binding protein 1 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=TV0309 PE=3 SV=1
Length = 236
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 29/233 (12%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ VE G PD++ G ++ +Q V V + +YI G+ V+
Sbjct: 10 IVLPGDPVEVQGKIRNGIYRGPDNKYYSEYFG-TLQVSDQYVDVVPFSGQYIPRKGDKVI 68
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ + W VD NS + LH+ R S D ++ +L GD + A+I
Sbjct: 69 GKIIEVGPSTWTVDINSPYFAMLHMNDTPW------RISSGD---LKRYLNSGDYVYAKI 119
Query: 152 HQIS--TEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNLA---CGAQVIL 203
++ E LTL LK KL G ++ + S + R N+ ++I+
Sbjct: 120 MSVNEIKESWLTLKEPGLK--KLEGGHMVLIHASRVPRVIGKGGGMVNMVKELTSTRIII 177
Query: 204 GCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETIT-----RLNNVIKALAESK 251
G NG +W+ E G + +++ +RE T R+ + +K L K
Sbjct: 178 GQNGLIWIDGPIE----GVTMAIAAIEMIEREAHTEGLTVRVESFLKELRGDK 226
>sp|A9A5C8|ECR1_NITMS Probable exosome complex RNA-binding protein 1 OS=Nitrosopumilus
maritimus (strain SCM1) GN=Nmar_0431 PE=3 SV=1
Length = 226
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 14/194 (7%)
Query: 64 GVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPG 123
G+ E + V V + +YI +I ++V+G+V S W +D NS L V
Sbjct: 38 GISEIYDDSVRVIPLTGKYIPKINDLVIGKVNSHTSLSWELDINSCYVGFLPAQDVF--- 94
Query: 124 GEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPS 183
R S +E+ + L+ GDL++A I + GK+ G+L+ + PS
Sbjct: 95 --GRDFSAHADELATK-LRTGDLVAARIANFDRTRDPLVSISDRDLGKIDSGVLMEISPS 151
Query: 184 LIRR------SKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETI 237
+ R S A A V +G NG+V VS E+ G + ++++ +
Sbjct: 152 KVPRLIGKKGSMIQMIEEATDAAVTIGQNGWVVVSC--ESPEGLLKAKKAIQMVNEQAHV 209
Query: 238 TRLNNVIKALAESK 251
L + +K + + K
Sbjct: 210 ANLTDQVKEMLDKK 223
>sp|Q12ZB8|ECR1_METBU Probable exosome complex RNA-binding protein 1 OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_0198 PE=3 SV=1
Length = 263
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 84/192 (43%), Gaps = 17/192 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + + M G GT+ + I + + G+ VSV + +YI + ++
Sbjct: 5 IVIPGQLLSE-KKEMAGPGTYVKNGNIYSLLYGIA-NFKGRVSVVPFSGKYIPSRKDFII 62
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
V + W+++T S + LH++ E +R D MR+F+ GD + +
Sbjct: 63 VNVIDVTPSNWIMETGSPYDGLLHVS-------EFPKRV--DSSEMRKFMDVGDCVIVRV 113
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA------CGAQVILGC 205
+S + L R L +G ++ V PS + R H ++ V +G
Sbjct: 114 KDVSKAMKVELSMREQGSRALSKGRIIEVVPSKVPRVIGHGGSMVSILKKESNCDVFVGK 173
Query: 206 NGYVWVSAIDEN 217
NG +W++ D++
Sbjct: 174 NGRIWINGKDKD 185
>sp|Q9UXC4|ECR1_SULSO Probable exosome complex RNA-binding protein 1 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO0736 PE=1 SV=1
Length = 249
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMRE 139
S Y +I ++V+G V ++ WVVD + ++ +L + NL G RS+ E +R
Sbjct: 66 SFYYPKINDIVIGLVEDVEIYGWVVDIKAPYKA--YLPASNLLG-----RSINVGEDLRR 118
Query: 140 FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV-P---PSLIRRSKSHFCNL 195
+L GD + A I L + G++ GI++ + P P +I ++KS + L
Sbjct: 119 YLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVSNGIVIDIMPVKVPRVIGKNKSMYETL 178
Query: 196 A--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252
G + + NG +W + I+ + K+ + I L + IK E K+
Sbjct: 179 TSKSGCSIFVANNGRIWATCPSRFSEEILIEAIR--KIENESHIKGLTDRIKQFIEEKL 235
>sp|Q975G7|ECR1_SULTO Probable exosome complex RNA-binding protein 1 OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=STK_04440 PE=3 SV=1
Length = 247
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 14/157 (8%)
Query: 60 ASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTS 118
+S+ G++E L + + RYI ++G+ V+G + ++ WV+D S S
Sbjct: 42 SSITGLIEVKENLFEIVPLEGHRYIPKVGDTVIGLIEDVEIYGWVLDIKSPY-------S 94
Query: 119 VNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILL 178
LP R V E +R +L GD + A+I + L + G++ GI++
Sbjct: 95 AYLPASSFLGRPVSPGEDLRRYLNLGDYVIAKIETYDRTINPILSIKGKGLGRVSSGIVI 154
Query: 179 TVP----PSLIRRSKSHFCNLA--CGAQVILGCNGYV 209
+P P +I +++S L G ++++ NG +
Sbjct: 155 DIPPVKVPRVIGKNRSMLDTLTSETGCEILVAQNGRI 191
>sp|O29758|ECR1_ARCFU Probable exosome complex RNA-binding protein 1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_0492 PE=1 SV=1
Length = 223
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 25/178 (14%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
G+GT+ + ++ A + G+ ++ V V + RY +G+VV+G + + + W VD
Sbjct: 18 AGYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDI 77
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLH--- 163
S ++ L ++ ++ + E L GD I A++ I + +TL
Sbjct: 78 YSPYQAFLPVSE---------NPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKD 128
Query: 164 --TRSLKYGKLGQGILLTVPPSLIRR---SKSHFCNL---ACGAQVILGCNGYVWVSA 213
R +++G+ ++ + P+ + R K L Q+++G NG +WV+
Sbjct: 129 RICRPIRFGR-----IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNG 181
>sp|Q8ZVM8|ECR1_PYRAE Probable exosome complex RNA-binding protein 1 OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=PAE2208 PE=3 SV=1
Length = 235
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 23/218 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
++ PG+ + + + G + D+ + ++ V G+VE +V V + Y + G++V+
Sbjct: 9 LVFPGDVIATADSKVEGP-VYLDNGKYRSLVVGLVEFREDVVVVVPLEGTYKPKKGDLVI 67
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEG--DLIS 148
G VT + + W VD S + + LP GE R V E + FL G +
Sbjct: 68 GYVTDVLATGWEVDVRSFMPAY-------LPVGEALHRHVDLETTPLTTFLNIGDVVVAK 120
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKSHFCN--LACGAQVIL 203
+ ++ E + L + K GK+ G ++ + P + R + N + G +++
Sbjct: 121 VKDVDLTDEYPIILTLKDEKVGKVESGTVVEITPVKVPRVIGKRGSMLNTLMELGCDIVV 180
Query: 204 GCNGYVWVSAIDENKS---GGFIQNME----VVKLSDR 234
G NG +WV D I+ +E V+ L+DR
Sbjct: 181 GQNGRIWVKCKDPRDEVFLASLIRKIEAESHVMGLTDR 218
>sp|Q8PTT9|ECR1_METMA Probable exosome complex RNA-binding protein 1 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=MM_2622 PE=3 SV=1
Length = 260
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
+G+GT+ +++I +S+ G+ V V + YI + +VV+G V + W++D
Sbjct: 19 SGYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSVNDVVIGVVIVVTPSNWILDI 78
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRS 166
+ + LH++ + R V+ EM E L GD + + + + + L R
Sbjct: 79 AAPYDGLLHVS--------EYPRRVESREMP-EILDVGDSVILRVRDVDSSMKIELALRD 129
Query: 167 LKYGKLGQGILLTVPPSLIRRSKSHFCNL------ACGAQVILGCNGYVWVSAIDEN 217
KL G ++ V P + R H ++ + +G NG +W+ DE+
Sbjct: 130 PNLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWIDGKDED 186
>sp|B1L6N8|ECR1_KORCO Probable exosome complex RNA-binding protein 1 OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1371 PE=3 SV=1
Length = 228
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 28/185 (15%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
+ PG+ V Y+ GT I++ G+V + +S+ + YI + ++V+G
Sbjct: 25 VKPGKDV-----YVDESGT------IRSKKLGLVSLKDDEISIVPLVGAYIPKEDDLVIG 73
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
V+ + +VD S + AL + QRR D + + LK GD+I A++
Sbjct: 74 IVSKISGNTILVDIRSPYQGALPI---------QRRAERVD--LKKYDLKIGDVILAKVR 122
Query: 153 QISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI------RRSKSHFCNLACGAQVILGCN 206
SL L + GKL G LL V P+ + R+S A +++I+ N
Sbjct: 123 SFDGASSLILTIDAEGLGKLEGGYLLEVDPAKVPRVIGKRQSMLSMLKEATRSEIIVANN 182
Query: 207 GYVWV 211
G +WV
Sbjct: 183 GRIWV 187
>sp|Q4JB26|ECR1_SULAC Probable exosome complex RNA-binding protein 1 OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_0611 PE=3 SV=1
Length = 249
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 13/158 (8%)
Query: 79 NSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMR 138
+SRY ++G+ ++G V ++ WV+D S S LP R + E +R
Sbjct: 64 SSRYYPKVGDTIIGLVEDIEIYGWVIDIKS-------FYSAYLPASSLLGRPISPGEDVR 116
Query: 139 EFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI------RRSKSHF 192
+L GD + A+I S L + G++ G ++ + P + RS
Sbjct: 117 RYLDVGDYVIAKIEAFDRTISPVLTVKGKGLGRIPLGTVMDIMPVKVPRVIGKNRSMIEV 176
Query: 193 CNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVK 230
G ++ + NG + + + I+ + +++
Sbjct: 177 LTSESGCEIFVAQNGRIHIKCANNLIEEALIEAINIIQ 214
>sp|Q469M4|ECR1_METBF Probable exosome complex RNA-binding protein 1 OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A2505 PE=3
SV=1
Length = 260
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 16/192 (8%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + G+GT+ +++I + G+ V V + YI +VV+
Sbjct: 5 IVIPGDLISE-NSKKAGYGTYVKNDKIYSLFCGIENLKEDKVGVIPLAGVYIPSANDVVI 63
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G V + W++D S + H++ + R ++ E M E L GD I +
Sbjct: 64 GIVIVVTPSNWIMDIASPYDGLFHVS--------EYPRRIESRE-MHEVLNVGDSIILRV 114
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL------ACGAQVILGC 205
+ + L R + KL G ++ V P + R H ++ + +G
Sbjct: 115 KDVDNSMKVELALRDSSFHKLKTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQ 174
Query: 206 NGYVWVSAIDEN 217
NG +W+ D++
Sbjct: 175 NGRIWIDGKDDD 186
>sp|Q8TPX7|ECR1_METAC Probable exosome complex RNA-binding protein 1 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_1777 PE=3 SV=1
Length = 260
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 15/177 (8%)
Query: 47 TGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
G+GT+ +++I +S+ G+ V V + YI +VV+G V + W+ D
Sbjct: 19 AGYGTYVKNDKIYSSLCGIENLKEDKVGVIPLAGAYIPSANDVVIGIVIVVTPSNWIFDI 78
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRS 166
+ + LH++ + R V+ EM E L GD + + + + + L R
Sbjct: 79 AAPYDGLLHVS--------EYPRRVESREMP-EILNVGDSVILRVKDVDSSMKVELALRD 129
Query: 167 LKYGKLGQGILLTVPPSLIRRSKSHFCNL------ACGAQVILGCNGYVWVSAIDEN 217
KL G ++ V + R H ++ + +G NG +W+ DE+
Sbjct: 130 PSLHKLKTGQIIKVESVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWIDGKDED 186
>sp|E0SQX5|ECR1_IGNAA Probable exosome complex RNA-binding protein 1 OS=Ignisphaera
aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1)
GN=Igag_1503 PE=3 SV=1
Length = 253
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 75 VRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQD- 133
V + RYI G++V+G V + W++D NS S L+ + RS
Sbjct: 68 VIPLKGRYIPREGDIVIGIVVDVTLSSWIIDINSPYLSVLN-------ASDYLGRSFNPL 120
Query: 134 EEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR---SKS 190
+ +R++L+ GD++ +I L + GK+ G L+ + P + R K
Sbjct: 121 TDNIRKYLEIGDVVVGKIATFDRSRGPILTVQDKGLGKVVDGSLIEIEPIKVARVIGKKK 180
Query: 191 HFCNL---ACGAQVILGCNGYV 209
N+ +++G NG +
Sbjct: 181 SMLNMLIEQTKCDILVGNNGRI 202
>sp|Q9YC02|ECR1_AERPE Probable exosome complex RNA-binding protein 1 OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=APE_1448 PE=1 SV=1
Length = 235
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFL 141
Y+ + G+VV+G + + W VD NS + L + G +V D M+ L
Sbjct: 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFL---GRPFNPAVDD---MQSLL 115
Query: 142 KEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR 187
K GD I A++ S L + G++ +G ++ + P+ + R
Sbjct: 116 KVGDYIKAKVVAFDKTRSPLLTVQGEGLGRIVRGKIVEISPAKVPR 161
>sp|Q12400|TRM10_YEAST tRNA (guanine(9)-N1)-methyltransferase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRM10 PE=1 SV=1
Length = 293
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 180 VPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITR 239
VP LIR + + G ++IL C + DE + + E+V LS++ +TR
Sbjct: 76 VPQELIREPRINVNQTDSGIEIILDC-------SFDE-----LMNDKEIVSLSNQ--VTR 121
Query: 240 ---LNNVIKALAESKVMLFDTSIQYAYEESLKYSTYD 273
N AE KV FD ++ +E +LK + Y+
Sbjct: 122 AYSANRRANHFAEIKVAPFDKRLKQRFETTLKNTNYE 158
>sp|Q08285|RRP40_YEAST Exosome complex component RRP40 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP40 PE=1 SV=2
Length = 240
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 29/178 (16%)
Query: 53 PDDEEIKASVGGVVEKVN------QLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDT 106
P+ +EI+ GV+ Q + + RYI + + V+G + G S + V
Sbjct: 29 PNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKVSL 88
Query: 107 NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT-- 164
+ S++ L+ + P ++ R L+ GDL+ A + E +
Sbjct: 89 QN-FSSSVSLSYMAFPNASKKNRPT---------LQVGDLVYARVCTAEKELEAEIECFD 138
Query: 165 ----RSLKYGKLGQGILLTVPPSLIRR--SKSHFCNLACGA-----QVILGCNGYVWV 211
R +G L G+++ V + R+ + F L A +V +G NG +WV
Sbjct: 139 STTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWV 196
>sp|Q9Z7T0|G3P_CHLPN Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae
GN=gap PE=3 SV=1
Length = 335
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 33 LTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVG 92
L PG+ + YL + + HG FP+D +A V ++ Q +S R + + ++G +V
Sbjct: 34 LVPGDALTYLFKFDSTHGRFPEDVRCEADHLIVGKRKIQFLSERNVQNLPWKDLGVDLVI 93
Query: 93 RVTGLQSQK 101
TGL ++K
Sbjct: 94 ECTGLFTKK 102
>sp|B0S1D9|PNP_FINM2 Polyribonucleotide nucleotidyltransferase OS=Finegoldia magna
(strain ATCC 29328) GN=pnp PE=3 SV=1
Length = 714
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
EIGE +GRVT + + V+ E LH++++ +R V+D LKE
Sbjct: 618 EIGEKYLGRVTKIMNFGAFVEILPGKEGLLHISNI----AHERTNKVED------VLKEN 667
Query: 145 DLISAEIHQISTEGSLTLHTRSL 167
D I ++ I +G +TL ++L
Sbjct: 668 DEIMVKLMDIDDQGKMTLSRKAL 690
>sp|C5BWR2|PNP_BEUC1 Polyribonucleotide nucleotidyltransferase OS=Beutenbergia cavernae
(strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=pnp PE=3
SV=1
Length = 744
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 58 IKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLT 117
I A+ G E Q ++ A+ + ++ E+GE VG V S V + LH++
Sbjct: 625 IGATDGPSAEAARQ--AINAIANPHMPEVGERFVGTVVKTTSFGAFVSLTPGKDGLLHIS 682
Query: 118 SVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHT 164
+ G +R +V+D L G + EI +I G L+LH
Sbjct: 683 QIRRLVGGKRVENVED------VLGVGQKVQVEIAEIDPRGKLSLHA 723
>sp|Q6BSB8|RUVB2_DEBHA RuvB-like helicase 2 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RVB2 PE=3
SV=1
Length = 480
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 214 IDENKSGGFIQNMEVVKLSDRETITRL-NNVIKALAESKVMLFDT-SIQYAYEESLKYST 271
ID + +GG Q +K +D ETI L N +I+ L + KV+ D SI A + K
Sbjct: 146 IDRSITGGHKQGKLTIKTTDMETIYELGNKMIEGLTKEKVLAGDVISIDKASGKITKLGK 205
Query: 272 -------YDLLKPESKLDLVLCTAQKLQ 292
YD + PE+K V C +LQ
Sbjct: 206 SFTRARDYDAMGPETK--FVQCPEGELQ 231
>sp|Q8TBZ9|CG062_HUMAN Uncharacterized protein C7orf62 OS=Homo sapiens GN=C7orf62 PE=2
SV=1
Length = 253
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 170 GKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVV 229
G+ G+LL P S++ +S L +V+L G+V ++++ FIQ M+++
Sbjct: 82 GEAVTGLLLIYPTSILHILESSSDTLY---KVLLDYIGHV------KDETVFFIQQMKII 132
Query: 230 KLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQ 289
+S + ++ + VM D Q +SLK D L KL L LC
Sbjct: 133 VISHNIPMRLFMQWHVSVIKVPVMYLDDVTQ---SQSLKEVITDFLTQTHKLSLYLCQTM 189
Query: 290 KLQTLGLAD 298
K+ T G D
Sbjct: 190 KVGTKGPGD 198
>sp|Q5AGZ9|RUVB2_CANAL RuvB-like helicase 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RVB2 PE=3 SV=1
Length = 498
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 214 IDENKSGGFIQNMEVVKLSDRETITRL-NNVIKALAESKVMLFDT-SIQYAYEESLKYS- 270
ID +GG Q +K +D ETI L N +I+ L + KV+ D SI A + K
Sbjct: 149 IDRTITGGHKQGKLTIKTTDMETIYELGNKMIEGLTKEKVLAGDVISIDKASGKITKLGR 208
Query: 271 ------TYDLLKPESKLDLVLCTAQKLQ 292
YD + PE+K V C +LQ
Sbjct: 209 SFTRARDYDAMGPETK--FVQCPEGELQ 234
>sp|P40534|PRM2_YEAST Pheromone-regulated membrane protein 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRM2 PE=1 SV=1
Length = 656
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 102 WVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLT 161
WV DTN+ E L+ +S N G + + + + + EFL + L + E+ ++ +L
Sbjct: 529 WVNDTNTQFEKYLNESSQNWQGIDLQVEPLLGSDSINEFLGQYFLPTYEVTNTNSSFALD 588
Query: 162 LHTRSLKYGKLGQGILLT 179
+ KYG + +GI +T
Sbjct: 589 IQ----KYGIINRGINIT 602
>sp|Q21EI0|METX_SACD2 Homoserine O-acetyltransferase OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=metX PE=3 SV=1
Length = 381
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 75 VRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNS------ILESALHLTSVNLPGGEQRR 128
VR + I + VV G + G+Q+ +W ++ + ++ SA++LT+ N+ E R
Sbjct: 139 VRLADRLGINQWAAVVGGSLGGMQAMRWALEHPNRLRHCVVIASAMNLTAQNIAFNETAR 198
Query: 129 RSVQDE 134
+++Q +
Sbjct: 199 QAIQSD 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,855,227
Number of Sequences: 539616
Number of extensions: 4251077
Number of successful extensions: 13715
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 13642
Number of HSP's gapped (non-prelim): 85
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)