Query psy10116
Match_columns 298
No_of_seqs 256 out of 1112
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:20:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nn6_H Exosome complex exonucl 100.0 1.1E-70 3.9E-75 519.3 25.0 287 8-295 18-307 (308)
2 2nn6_G Exosome complex exonucl 100.0 2.4E-46 8.3E-51 350.5 18.6 192 28-248 37-272 (289)
3 2ba0_A Archeal exosome RNA bin 100.0 7.1E-46 2.4E-50 337.2 21.1 207 30-265 2-215 (229)
4 2z0s_A Probable exosome comple 100.0 3.5E-45 1.2E-49 333.6 15.1 198 30-252 9-214 (235)
5 2je6_I RRP4, exosome complex R 100.0 3E-44 1E-48 330.7 13.8 181 29-217 15-204 (251)
6 2ja9_A Exosome complex exonucl 100.0 1.6E-35 5.4E-40 259.5 15.2 138 80-246 1-152 (175)
7 3m7n_A Putative uncharacterize 100.0 2E-32 6.9E-37 240.1 14.5 132 31-182 2-144 (179)
8 2nn6_I 3'-5' exoribonuclease C 100.0 1.9E-31 6.6E-36 239.3 7.4 142 28-182 17-173 (209)
9 2k52_A Uncharacterized protein 99.0 3.6E-09 1.2E-13 80.3 10.2 71 83-167 2-73 (80)
10 2khi_A 30S ribosomal protein S 98.9 7.1E-09 2.4E-13 83.9 9.5 88 71-167 14-103 (115)
11 2k4k_A GSP13, general stress p 98.9 6E-09 2.1E-13 86.3 8.9 74 83-166 4-78 (130)
12 1kl9_A Eukaryotic translation 98.9 8E-09 2.7E-13 90.6 9.8 77 81-167 10-89 (182)
13 2eqs_A ATP-dependent RNA helic 98.8 8.8E-09 3E-13 81.9 8.6 77 81-167 7-86 (103)
14 2khj_A 30S ribosomal protein S 98.8 8.4E-09 2.9E-13 82.6 8.0 83 75-167 19-103 (109)
15 2cqo_A Nucleolar protein of 40 98.8 8.6E-09 2.9E-13 84.3 7.3 77 81-167 17-97 (119)
16 2a19_A EIF-2- alpha, eukaryoti 98.8 1.9E-08 6.6E-13 87.5 9.9 77 81-167 10-89 (175)
17 1go3_E DNA-directed RNA polyme 98.8 1.9E-08 6.5E-13 87.5 8.5 85 81-172 76-173 (187)
18 1luz_A Protein K3, protein K2; 98.7 4.5E-08 1.6E-12 76.0 9.1 71 84-166 9-83 (88)
19 3aev_A Translation initiation 98.7 3.2E-08 1.1E-12 91.9 9.7 81 77-167 2-85 (275)
20 4ayb_E DNA-directed RNA polyme 98.6 1E-07 3.6E-12 82.4 8.7 90 81-172 76-172 (180)
21 1wi5_A RRP5 protein homolog; S 98.6 2.1E-07 7E-12 75.6 9.1 81 83-172 18-100 (119)
22 1q8k_A Eukaryotic translation 98.5 1.8E-07 6.2E-12 88.1 8.8 76 82-167 9-87 (308)
23 3cw2_C Translation initiation 98.5 8.3E-08 2.8E-12 88.6 5.4 80 79-168 4-86 (266)
24 2c35_B Human RPB7, DNA-directe 98.5 7.7E-07 2.6E-11 76.5 10.4 86 81-172 76-171 (172)
25 1y14_B B16, RPB7, DNA-directed 98.4 9E-07 3.1E-11 76.1 8.0 85 81-172 78-171 (171)
26 3go5_A Multidomain protein wit 98.3 1.7E-06 5.8E-11 80.6 10.0 70 85-172 151-222 (285)
27 3h0g_G DNA-directed RNA polyme 98.3 3.2E-07 1.1E-11 79.3 4.3 85 81-172 79-172 (172)
28 2b8k_G B16, DNA-directed RNA p 98.2 2.1E-06 7.3E-11 76.9 7.0 84 81-173 78-172 (215)
29 4aid_A Polyribonucleotide nucl 98.0 7.5E-07 2.6E-11 92.4 0.0 76 82-167 633-708 (726)
30 3ayh_B DNA-directed RNA polyme 97.9 0.0002 6.8E-09 63.3 14.6 90 81-172 76-199 (203)
31 3psi_A Transcription elongatio 97.8 2.3E-05 7.8E-10 85.4 7.6 77 82-167 898-975 (1219)
32 2asb_A Transcription elongatio 97.8 2.5E-05 8.7E-10 71.5 6.6 69 81-165 2-80 (251)
33 1hh2_P NUSA, N utilization sub 97.8 3.7E-05 1.3E-09 73.4 7.7 68 81-165 129-199 (344)
34 3bzc_A TEX; helix-turn-helix, 97.7 1.3E-05 4.5E-10 83.8 3.8 76 83-168 651-727 (785)
35 3cdi_A Polynucleotide phosphor 97.7 6E-06 2E-10 85.7 0.0 76 82-167 623-698 (723)
36 3psf_A Transcription elongatio 97.6 7.7E-06 2.6E-10 87.7 0.0 78 83-169 902-980 (1030)
37 1k0r_A NUSA; two component arr 97.6 7.7E-05 2.6E-09 71.7 6.6 67 81-163 125-201 (366)
38 1e3p_A Guanosine pentaphosphat 97.5 8.4E-06 2.9E-10 85.0 -2.0 76 82-167 663-742 (757)
39 3go5_A Multidomain protein wit 97.3 0.00092 3.1E-08 62.1 9.0 67 84-165 67-135 (285)
40 2bx2_L Ribonuclease E, RNAse E 97.2 0.0021 7.2E-08 64.3 11.6 87 73-165 34-126 (517)
41 2ckz_B C25, DNA-directed RNA p 97.0 0.011 3.7E-07 52.9 13.2 74 81-155 76-154 (218)
42 2bh8_A 1B11; transcription, mo 94.3 0.036 1.2E-06 43.4 3.8 38 83-120 58-95 (101)
43 3d0f_A Penicillin-binding 1 tr 94.2 0.33 1.1E-05 37.9 9.4 63 83-150 30-93 (106)
44 2id0_A Exoribonuclease 2; RNAs 93.8 0.13 4.5E-06 52.5 8.1 80 83-164 555-642 (644)
45 2vnu_D Exosome complex exonucl 89.9 0.33 1.1E-05 50.6 5.5 79 82-164 665-759 (760)
46 2wp8_J Exosome complex exonucl 86.9 0.99 3.4E-05 48.3 6.9 80 81-164 881-976 (977)
47 2i9x_A Putative septation prot 85.9 1.2 4.1E-05 34.2 5.1 41 197-238 35-76 (87)
48 2ia9_A Putative septation prot 83.8 2 7E-05 33.8 5.7 52 197-267 35-87 (100)
49 2rf4_A DNA-directed RNA polyme 82.8 2.9 9.8E-05 36.8 6.9 74 81-158 124-203 (214)
50 3v2d_0 50S ribosomal protein L 80.9 2.9 9.9E-05 32.0 5.3 52 27-78 25-84 (85)
51 2i9z_A Putative septation prot 80.3 2.3 8E-05 33.8 4.9 52 197-267 35-87 (105)
52 2zjr_T 50S ribosomal protein L 78.4 2.3 7.9E-05 33.0 4.2 52 27-78 25-84 (91)
53 3r8s_W 50S ribosomal protein L 76.0 3.5 0.00012 30.9 4.4 51 27-77 16-75 (76)
54 2bh8_A 1B11; transcription, mo 64.9 22 0.00074 27.3 7.0 58 85-155 12-73 (101)
55 2ftc_O L27MT, MRP-L27, mitocho 52.3 12 0.00041 27.5 3.3 41 27-67 25-68 (69)
56 2ctl_A Vigilin; K homology typ 43.6 22 0.00074 27.1 3.7 38 177-214 20-70 (97)
57 3fyr_A Sporulation inhibitor S 42.8 37 0.0013 23.1 4.3 34 253-290 5-38 (48)
58 1vig_A Vigilin; RNA-binding pr 42.6 27 0.00093 24.8 3.9 39 177-215 8-56 (71)
59 2dgy_A MGC11102 protein; EIF-1 42.4 85 0.0029 24.8 7.1 55 82-152 10-65 (111)
60 1y71_A Kinase-associated prote 40.9 25 0.00084 28.8 3.8 32 84-115 8-52 (130)
61 3k2z_A LEXA repressor; winged 36.0 75 0.0026 26.5 6.3 64 32-98 123-193 (196)
62 2oqk_A Putative translation in 35.0 1.2E+02 0.0041 23.9 7.0 55 82-152 27-82 (117)
63 2ctm_A Vigilin; K homology typ 29.6 53 0.0018 24.8 3.9 39 177-215 20-69 (95)
64 2opv_A KHSRP protein; KH domai 29.6 51 0.0017 24.0 3.7 37 177-213 17-67 (85)
65 3ers_X TRNA-binding protein YG 29.1 29 0.00099 27.7 2.4 21 88-108 13-40 (118)
66 3pr9_A FKBP-type peptidyl-prol 28.0 58 0.002 26.9 4.2 42 71-112 86-136 (157)
67 3i4o_A Translation initiation 27.6 1.8E+02 0.0061 21.5 6.4 50 90-153 16-66 (79)
68 1kca_A Repressor protein CI; g 25.7 1.6E+02 0.0055 22.2 6.1 65 31-98 31-102 (109)
69 3u1k_A Polyribonucleotide nucl 25.1 26 0.0009 35.6 1.8 41 176-216 569-615 (630)
70 1a62_A RHO; transcription term 24.1 39 0.0013 27.3 2.3 43 71-120 77-120 (130)
71 1ix5_A FKBP; ppiase, isomerase 23.6 67 0.0023 26.1 3.7 30 83-112 103-137 (151)
72 2z1c_A Hydrogenase expression/ 23.0 1.3E+02 0.0046 22.0 4.9 18 91-108 6-23 (75)
73 2ctk_A Vigilin; K homology typ 21.7 70 0.0024 24.5 3.3 40 176-215 19-68 (104)
74 3prb_A FKBP-type peptidyl-prol 21.6 84 0.0029 27.8 4.2 42 71-112 86-136 (231)
75 3p8d_A Medulloblastoma antigen 21.4 1.2E+02 0.0042 21.8 4.3 14 137-150 3-16 (67)
76 4fu6_A PC4 and SFRS1-interacti 21.2 30 0.001 28.4 1.1 20 134-153 16-35 (153)
77 2z0s_A Probable exosome comple 21.2 2.8E+02 0.0096 24.1 7.6 30 83-112 114-144 (235)
78 1fr3_A MOP, molybdate/tungstat 21.1 96 0.0033 20.7 3.6 15 139-153 46-60 (67)
79 1d7q_A Translation initiation 20.7 2.8E+02 0.0097 22.8 6.9 54 83-152 27-81 (143)
80 3gnf_B MVP, major vault protei 20.1 2.7E+02 0.0094 26.6 7.6 82 44-133 146-253 (387)
81 2k8i_A SLYD, peptidyl-prolyl C 20.0 1.7E+02 0.0058 24.3 5.6 43 70-112 73-127 (171)
No 1
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=1.1e-70 Score=519.31 Aligned_cols=287 Identities=49% Similarity=0.858 Sum_probs=242.0
Q ss_pred CceeeeccccCCCccccccccCCCeEecCCccCCCCCeeccCCeEecCCeEEEEEeeEEEEeCcEEEEEecCccccccCC
Q psy10116 8 PVIEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIG 87 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~iV~PGD~I~~~~~~~~G~Gty~~~g~i~Asv~G~v~~~nk~v~V~p~~~rY~P~vG 87 (298)
|.++++++.+++++... .+..+++|+|||.|+..++|++|+|||.++|+|+||++|.+...++++||+|++++|.|++|
T Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~iVlPGd~L~~~~~~~~G~Gty~~~g~I~Asv~G~v~~~~~~vsV~p~~~rY~P~vG 96 (308)
T 2nn6_H 18 MEMRLPVARKPLSERLG-RDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVG 96 (308)
T ss_dssp -----------------------CBCCTTCBCCCCTTCCBCTTEEECSSSEEECSSEEEEEETTEEEEEESSCCCCCCSS
T ss_pred ccccchhhhhccccccc-cCCCCcEEeCCCCCCCCCCEeecCCeEEECCEEEEEEEEEEEecCCEEEEeeCCCccCCCCC
Confidence 56889999999987443 45567899999999988899999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCCcEEEEeccC
Q psy10116 88 EVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSL 167 (298)
Q Consensus 88 DiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg~~~Lstr~~ 167 (298)
|+|+|+|+++++++|+|||++++++.+++|+++||||++|++...|+.+|+++|++||+|+|||++++.++++.||||++
T Consensus 97 DvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~LStr~~ 176 (308)
T 2nn6_H 97 DIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSL 176 (308)
T ss_dssp BCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEEECCSS
T ss_pred CEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEEEecCc
Confidence 99999999999999999999999999999999999999999888889999999999999999999999889999999999
Q ss_pred CCccCCCceEEEeCchhhccccCcceeccccEEEEEeeCceEEEecCCCC---CCCccccccccCCHHHHHHHHHHHHHH
Q psy10116 168 KYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDEN---KSGGFIQNMEVVKLSDRETITRLNNVI 244 (298)
Q Consensus 168 ~lGkL~~G~lv~v~~~li~r~~~~~~~l~~~~eiivG~NG~IWI~~~~~~---~~~~~~~~~~~i~~~~r~~i~rv~n~i 244 (298)
+||+|++|+++++++.|++|+++|++++.|+|+|++|+||||||++...+ ...+|.+++++++.++|+.|||++|||
T Consensus 177 ~LGkL~~G~v~~vs~~lv~r~~~~l~~l~~g~eI~vG~NG~IWi~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~r~~n~i 256 (308)
T 2nn6_H 177 KYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCI 256 (308)
T ss_dssp TTCEECSSCEEECCTTSCCCSTTCSCCCBTTBEEEEETTTEEEEECCCCC------CCGGGSSCCCHHHHHHHHHHHHHH
T ss_pred CCcccCCeEEEEEChhheechhheEecCCCCcEEEEeCCCEEEEcCCcchhhhhcccccccCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987642 234688888999999999999999999
Q ss_pred HHHhhCCcccCHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHHHHHHHcc
Q psy10116 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLG 295 (298)
Q Consensus 245 ~~l~~~~~~i~~~~i~~~~~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 295 (298)
++|++++++||+++|+++|++|++++++|||.||+++++++++++||++++
T Consensus 257 ~~l~~~~~~i~~~~i~~~~~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 307 (308)
T 2nn6_H 257 ISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQE 307 (308)
T ss_dssp HHHHHTTCCCCHHHHHHHHHTHHHHCCSSCCTTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCHHHHHHHHHHHhhCCHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999875
No 2
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=2.4e-46 Score=350.51 Aligned_cols=192 Identities=23% Similarity=0.352 Sum_probs=162.2
Q ss_pred cCCCeEecCCccCCCC-----------------------Ceec--cCCeEecCCeEEEEEeeEEEEeCc-------EEEE
Q psy10116 28 FTDPILTPGETVEYLE-----------------------GYMT--GHGTFPDDEEIKASVGGVVEKVNQ-------LVSV 75 (298)
Q Consensus 28 ~~~~iV~PGD~I~~~~-----------------------~~~~--G~Gty~~~g~i~Asv~G~v~~~nk-------~v~V 75 (298)
..+.+|+|||.|+..+ +|++ |+|||.++++++||++|.++.+++ ++||
T Consensus 37 ~~~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~~~~~I~as~aG~l~~~~~~~~~~~~~v~V 116 (289)
T 2nn6_G 37 VLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWV 116 (289)
T ss_dssp GGSSBCCSSEEECCSCSCCEECSSEEECC-----------------------CCCEEECSCCEEEEECCTTTSSCCEEEE
T ss_pred cCCcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEEECCEEEEEEeEeEEeccCCccCccceEEE
Confidence 4568999999998765 7888 999999999999999999998865 7999
Q ss_pred EecCccccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeC
Q psy10116 76 RAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIS 155 (298)
Q Consensus 76 ~p~~~rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~ 155 (298)
+|++++|+|++||+|+|+|+++.+++|+|||++++.|+|++++| ||+++ +||++|++||+|+|||++++
T Consensus 117 ~~~~~rYiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f--~Gatk---------~~r~~f~~GDlV~ArV~s~~ 185 (289)
T 2nn6_G 117 DSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSF--EGATK---------RNRPNVQVGDLIYGQFVVAN 185 (289)
T ss_dssp ECCCSSCCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSS--SCCSS---------CSSSSSCTTCEEEEEEEECC
T ss_pred EecCCCCCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhc--Ccchh---------hhhhhcCCCCEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999985 68764 46999999999999999999
Q ss_pred CCCcEEEEe-----ccCCCccC-CCceEEEeCchhhccccCccee----c--cccEEEEEeeCceEEEecCCCCCCCccc
Q psy10116 156 TEGSLTLHT-----RSLKYGKL-GQGILLTVPPSLIRRSKSHFCN----L--ACGAQVILGCNGYVWVSAIDENKSGGFI 223 (298)
Q Consensus 156 ~dg~~~Lst-----r~~~lGkL-~~G~lv~v~~~li~r~~~~~~~----l--~~~~eiivG~NG~IWI~~~~~~~~~~~~ 223 (298)
.+++++||| |+.+||+| ++|++|+|+|++++|+++|.+. | .++|||++|+||||||++.+.
T Consensus 186 ~~~~~eLsc~~~~~k~~~lG~L~~~G~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG~NG~IWI~~~~~------- 258 (289)
T 2nn6_G 186 KDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTI------- 258 (289)
T ss_dssp TTSCCEEECSBTTTTBCCCCSCCSSCEEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEETTTEEEECCSSH-------
T ss_pred CCCceEEEecccccccccCCEecCCeEEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEECCcEEEEecCCh-------
Confidence 999999999 99999999 9999999999999999988765 3 489999999999999998653
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHh
Q psy10116 224 QNMEVVKLSDRETITRLNNVIKALA 248 (298)
Q Consensus 224 ~~~~~i~~~~r~~i~rv~n~i~~l~ 248 (298)
++++ .+.|||+..+
T Consensus 259 ----------~~~~-~i~~aI~~~e 272 (289)
T 2nn6_G 259 ----------QQTL-ILANILEACE 272 (289)
T ss_dssp ----------HHHH-HHHHHHHHTT
T ss_pred ----------hHHH-HHHHHHHHhh
Confidence 3344 4777877763
No 3
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=7.1e-46 Score=337.22 Aligned_cols=207 Identities=20% Similarity=0.349 Sum_probs=179.8
Q ss_pred CCeEecCCccCCCCCeeccCCeEecCCeEEEEEeeEEEEeCcEEEEEecCccccccCCCEEEEEEEEEecceEEEEeCCC
Q psy10116 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSI 109 (298)
Q Consensus 30 ~~iV~PGD~I~~~~~~~~G~Gty~~~g~i~Asv~G~v~~~nk~v~V~p~~~rY~P~vGDiVIG~V~~V~~~~~~VDI~s~ 109 (298)
+++|+|||.|+. ++|++|+|||.++|+++||++|.+...++.+||+|++++|.|++||+|+|+|+++.+++|+|||+++
T Consensus 2 ~~iV~PGd~l~~-~~~~~G~Gty~~~g~i~as~~G~v~~~~~~v~V~p~~~~y~p~~GDiV~G~V~~v~~~~a~V~I~~~ 80 (229)
T 2ba0_A 2 RKIVLPGDLLST-NPRAAGYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDIYSP 80 (229)
T ss_dssp CCEECTTCEEES-CTTSBCTTEEEETTEEEECSSEEEEECSSCEEEEECSSSCCCCTTCEEEEEEEEECSSEEEEECSSS
T ss_pred CCEEcCCCCccc-CCeEecCCEEEeCCEEEEEEEEEEEEeCCEEEEEeCCCcccCCCCCEEEEEEEEEeCCeEEEEeCCC
Confidence 579999999986 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCCcEEEEeccCCCccCCCceEEEeCchhhcccc
Q psy10116 110 LESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189 (298)
Q Consensus 110 ~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg~~~Lstr~~~lGkL~~G~lv~v~~~li~r~~ 189 (298)
++|+||+++++. ..+..+|+++|++||+|+|+|++++.++.+.||||+.+||+|++|++++++|++++|+.
T Consensus 81 ~~g~l~isev~~---------~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~~lG~L~~G~v~~vs~~~v~rl~ 151 (229)
T 2ba0_A 81 YQAFLPVSENPE---------MKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRICRPIRFGRIVAINPARVPRVI 151 (229)
T ss_dssp SCEEEEGGGCTT---------CCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSSCEEESSSEEEECCGGGHHHHH
T ss_pred eEEEEEHHHccc---------cccccchhcccCCCCEEEEEEEEECCCCcEEEEEccccCCcccCCEEEEECHHHhHHHh
Confidence 999999999851 12457899999999999999999998899999999999999999999999999999975
Q ss_pred C----cceec--cccEEEEEeeCceEEEecCCCCCCCccccccccCCHHHHHHHHHHHHHHHHHhhCCcc-cCHHHHHHH
Q psy10116 190 S----HFCNL--ACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVM-LFDTSIQYA 262 (298)
Q Consensus 190 ~----~~~~l--~~~~eiivG~NG~IWI~~~~~~~~~~~~~~~~~i~~~~r~~i~rv~n~i~~l~~~~~~-i~~~~i~~~ 262 (298)
+ |+++| .|+|+|++|+||||||++.. +....+.|||+..++.... --.+.|...
T Consensus 152 ~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~-------------------~~~~~~~~ai~~~e~~~~~~~l~~~v~~~ 212 (229)
T 2ba0_A 152 GKKGSMIKLLKSELDVQIVVGQNGLIWVNGDR-------------------RKVSIAEEAIYLIEQEAHTEGLTDRVAEF 212 (229)
T ss_dssp CGGGHHHHHHHHHHTCEEEECTTSEEEEESCH-------------------HHHHHHHHHHHHHHHCSCCSSHHHHHHHH
T ss_pred cCCchHHHHhcccCCeEEEEECCcEEEEeCCc-------------------hhHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4 55556 58999999999999999643 2344588999988766652 224555554
Q ss_pred HHH
Q psy10116 263 YEE 265 (298)
Q Consensus 263 ~~~ 265 (298)
.+.
T Consensus 213 l~~ 215 (229)
T 2ba0_A 213 IKR 215 (229)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 4
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=100.00 E-value=3.5e-45 Score=333.57 Aligned_cols=198 Identities=21% Similarity=0.303 Sum_probs=134.7
Q ss_pred CCeEecCCccCCCCCeeccCCeEecCCeEEEEEeeEEEEeCc--EEEEEecCccccccCCCEEEEEEEEEecceEEEEeC
Q psy10116 30 DPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQ--LVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTN 107 (298)
Q Consensus 30 ~~iV~PGD~I~~~~~~~~G~Gty~~~g~i~Asv~G~v~~~nk--~v~V~p~~~rY~P~vGDiVIG~V~~V~~~~~~VDI~ 107 (298)
+.+|+|||.|+. ++|++|||||.++++++||++|.+...++ .+||+|.+++|.|++||+|+|+|+++.+++|+|||+
T Consensus 9 ~~iV~PGd~l~~-~~~~~G~Gty~~~~~I~Asv~G~v~~~~~~~~vsV~p~~~~y~p~~GDiV~G~V~~v~~~~~~V~I~ 87 (235)
T 2z0s_A 9 GRIVVPGEPLPE-EVEASPPYVIDYKGVKRATVVGLLREKGDGGGRAFVKLKEIYVPQAGDVVIGLIQSVGIMNWFVDIN 87 (235)
T ss_dssp ----------------------------------------------------CCCCCCTTCCEEEEEEEECSSEEEEECS
T ss_pred CcEEeCCCCccc-CceEcCCCEEEECCEEEEEEeEEEEEeCCccEEEEEeCCCccCCCCCCEEEEEEEEEeCCeEEEEeC
Confidence 579999999987 56999999999999999999999998876 899999999999999999999999999999999999
Q ss_pred CCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCCcEEEEeccCCCccCCCceEEEeCchhhcc
Q psy10116 108 SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR 187 (298)
Q Consensus 108 s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg~~~Lstr~~~lGkL~~G~lv~v~~~li~r 187 (298)
++++|+||+++++ + ++++.+..+|+++|++||+|+|+|++++.++.+.||||+..||+|++|++++++|.+++|
T Consensus 88 ~~~~g~l~isei~--~----~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~~~lG~l~gG~vv~vs~~~~~r 161 (235)
T 2z0s_A 88 SPYVAVLSVQDFL--G----RPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGEGLGRIVRGKIVEISPAKVPR 161 (235)
T ss_dssp SSSCEEEEHHHHH--T----SCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSSSCEECCSSEEEECCGGGSGG
T ss_pred CCeEEEEEHHHhC--C----CccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEecccCccccCCEEEEECHHHhHH
Confidence 9999999999996 2 345678899999999999999999999988899999999999999999999999999999
Q ss_pred ccC----cceecc--ccEEEEEeeCceEEEecCCCCCCCccccccccCCHHHHHHHHHHHHHHHHHhhCCc
Q psy10116 188 SKS----HFCNLA--CGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKV 252 (298)
Q Consensus 188 ~~~----~~~~l~--~~~eiivG~NG~IWI~~~~~~~~~~~~~~~~~i~~~~r~~i~rv~n~i~~l~~~~~ 252 (298)
+.. |+++|. ++|++++|+||+|||++... +....+.|||+..++...
T Consensus 162 l~~~~~~~l~~l~~~~~~~i~vG~NG~IWi~~~~~------------------~~~~~~~~ai~~~e~~~~ 214 (235)
T 2z0s_A 162 VIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNE------------------DLEAIAVMAIKIIDEEAY 214 (235)
T ss_dssp GTCGGGHHHHHHHHHHCCEEEEETTTEEEEECSCH------------------HHHHHHHHHHHHHHHCSC
T ss_pred HhcCcchHHHHhcccCCeEEEEeCCCEEEEecCCH------------------HHHHHHHHHHHHHHhhhh
Confidence 985 777774 89999999999999999753 344468999998876654
No 5
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=100.00 E-value=3e-44 Score=330.65 Aligned_cols=181 Identities=21% Similarity=0.384 Sum_probs=159.4
Q ss_pred CCCeEecCCccCCCCCeeccC--CeEecCCeEEEEEeeEEEEeCcEEEEEecCc-cccccCCCEEEEEEEEEecceEEEE
Q psy10116 29 TDPILTPGETVEYLEGYMTGH--GTFPDDEEIKASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVVVGRVTGLQSQKWVVD 105 (298)
Q Consensus 29 ~~~iV~PGD~I~~~~~~~~G~--Gty~~~g~i~Asv~G~v~~~nk~v~V~p~~~-rY~P~vGDiVIG~V~~V~~~~~~VD 105 (298)
++++|+|||.|+. ++|++|| |||.++|+|+||++|.+...++.++|+|+++ +|.|++||+|+|+|+++.+++|+||
T Consensus 15 ~~~iV~PGd~l~~-~~~~~G~~~Gty~~~g~i~as~~G~v~~~~~~v~V~p~~~~~y~p~~GDiV~G~V~~v~~~ga~Vd 93 (251)
T 2je6_I 15 PRSIVVPGELLAE-GEFQIPWSPYILKINSKYYSTVVGLFDVKDTQFEVIPLEGSFYYPKINDIVIGLVEDVEIYGWVVD 93 (251)
T ss_dssp SSCEECTTCEEEE-ECCCCCCCTTEEEETTEEEECSSEEEEEETTEEEEEESCCSCCCCCTTCEEEEEEEEECSSEEEEE
T ss_pred CCcEEcCCCCCcc-CCeeeCCCCCEEEECCEEEEEEEEEEEEeCCEEEEEECCCcccCCCCCCEEEEEEEEEeCceEEEE
Confidence 4689999999996 5699999 9999999999999999999999999999998 9999999999999999999999999
Q ss_pred eCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCCcEEEEeccCCCccCCCceEEEeCchhh
Q psy10116 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI 185 (298)
Q Consensus 106 I~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg~~~Lstr~~~lGkL~~G~lv~v~~~li 185 (298)
|+++++|+||++++. + ++.+.+ .+|+++|++||+|+|+|++++.++.+.||||+.+||+|++|++++++|.++
T Consensus 94 I~~~~~GlL~isei~--~----~~~~~~-~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~~lG~L~~G~v~~vs~~~v 166 (251)
T 2je6_I 94 IKAPYKAYLPASNLL--G----RSINVG-EDLRRYLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVSNGIVIDIMPVKV 166 (251)
T ss_dssp CSSSSCEEEEHHHHH--T----SCCCTT-CCCSSSCCTTCEEEEEEEEEETTEEEEEECCSTTCEECCSSCEEECCGGGH
T ss_pred cCCCeEEEEEHHHhc--C----Cccccc-cchhhcCCCCCEEEEEEEEECCCCcEEEEEccccCCcccCCEEEEECHHHh
Confidence 999999999999985 2 223445 889999999999999999999889999999999999999999999999999
Q ss_pred cccc----Ccceec--cccEEEEEeeCceEEEecCCCC
Q psy10116 186 RRSK----SHFCNL--ACGAQVILGCNGYVWVSAIDEN 217 (298)
Q Consensus 186 ~r~~----~~~~~l--~~~~eiivG~NG~IWI~~~~~~ 217 (298)
+|+. +|+++| .|+|+|++|+||||||++.+..
T Consensus 167 ~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~~ 204 (251)
T 2je6_I 167 PRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRF 204 (251)
T ss_dssp HHHHCGGGHHHHHHHTTC---CEECTTSEEEC-----C
T ss_pred HHHhcCcchHHHHhcccCCeEEEEECCcEEEEeCCCHH
Confidence 8863 477777 6999999999999999987653
No 6
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=100.00 E-value=1.6e-35 Score=259.46 Aligned_cols=138 Identities=24% Similarity=0.386 Sum_probs=123.7
Q ss_pred ccccccCCCEEEEEEEEEecceEEEEeCC-CceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCC
Q psy10116 80 SRYIGEIGEVVVGRVTGLQSQKWVVDTNS-ILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEG 158 (298)
Q Consensus 80 ~rY~P~vGDiVIG~V~~V~~~~~~VDI~s-~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg 158 (298)
+||.|++||+|+|+|+++.+++|+|||++ +++|+||++++ ||+++ +||++|++||+|+|||++++.++
T Consensus 1 krY~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~--~g~~k---------~~r~~l~~GDlV~ArV~~~~~~~ 69 (175)
T 2ja9_A 1 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAF--PNASK---------KNRPTLQVGDLVYARVCTAEKEL 69 (175)
T ss_dssp CCCCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSS--TTCCS---------SSCCCCCTTCEEEEEEEECCTTS
T ss_pred CCccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHC--Cchhh---------hhhccCCCCCEEEEEEEEecCCC
Confidence 48999999999999999999999999999 99999999986 57653 46999999999999999999999
Q ss_pred cEEEE------eccCCCccCCCceEEEeCchhhccccC--cceec-----cccEEEEEeeCceEEEecCCCCCCCccccc
Q psy10116 159 SLTLH------TRSLKYGKLGQGILLTVPPSLIRRSKS--HFCNL-----ACGAQVILGCNGYVWVSAIDENKSGGFIQN 225 (298)
Q Consensus 159 ~~~Ls------tr~~~lGkL~~G~lv~v~~~li~r~~~--~~~~l-----~~~~eiivG~NG~IWI~~~~~~~~~~~~~~ 225 (298)
+++|| +|+.+||+|++|++++|+|++++|+++ |++.| .++|||++|+||||||++.+.
T Consensus 70 ~~~Ltc~~~~~~r~~~lG~L~~G~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~--------- 140 (175)
T 2ja9_A 70 EAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEEL--------- 140 (175)
T ss_dssp CCEEESSCTTTCSCTTCEEECSCEEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETTTEEEEECSSH---------
T ss_pred ceEEEecccccccccCCcCcCCCEEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEECCcEEEEecCCH---------
Confidence 99999 999999999999999999999999974 66555 389999999999999998652
Q ss_pred cccCCHHHHHHHHHHHHHHHH
Q psy10116 226 MEVVKLSDRETITRLNNVIKA 246 (298)
Q Consensus 226 ~~~i~~~~r~~i~rv~n~i~~ 246 (298)
++++ .+.|||+.
T Consensus 141 --------~~~~-~v~~aI~~ 152 (175)
T 2ja9_A 141 --------SNTL-ACYRTIME 152 (175)
T ss_dssp --------HHHH-HHHHHHHH
T ss_pred --------HHHH-HHHHHHHH
Confidence 3444 58899998
No 7
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.98 E-value=2e-32 Score=240.05 Aligned_cols=132 Identities=23% Similarity=0.375 Sum_probs=121.4
Q ss_pred CeEecCCccCCCCCeeccCCeEecCCeEEEEEeeEEEEeCcEEEEEecCc-cccccCCCEEEEEEEEEecceEEEEeCC-
Q psy10116 31 PILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNS-RYIGEIGEVVVGRVTGLQSQKWVVDTNS- 108 (298)
Q Consensus 31 ~iV~PGD~I~~~~~~~~G~Gty~~~g~i~Asv~G~v~~~nk~v~V~p~~~-rY~P~vGDiVIG~V~~V~~~~~~VDI~s- 108 (298)
++|+|||.|+..++|++|||||.++|+|+||++|.++.+++++||+|+++ +|.|+ ||+|+|+|+++.+++|+|||++
T Consensus 2 ~iV~PGd~l~~~~~~~~G~Gty~~~~~i~as~~G~v~~~~~~v~V~~~~~~~y~p~-GdiV~G~V~~V~~~ga~V~I~~v 80 (179)
T 3m7n_A 2 RFVMPGDRIGSAEEYVKGEGVYEEGGELFAAVAGKLIIKDRVAKVESISPIPEIVK-GDVVLGRVVDLRNSIALIEVSSK 80 (179)
T ss_dssp CEECTTCEEEETTTSEECTTEEEETTEEEESSSEEEEEETTEEEEEESSCCCCCCT-TCEEEEEEEEECSSEEEEEEEEE
T ss_pred eEEcCCCCCCCCCCEeccCCEEEeCCEEEEEEEEEEEEeCCEEEEEECCCCcccCC-CCEEEEEEEEEeCCcEEEEEccc
Confidence 69999999998889999999999999999999999999999999999976 69999 9999999999999999999988
Q ss_pred ---------CceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCCcEEEEeccCCCccCCCceEEE
Q psy10116 109 ---------ILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLT 179 (298)
Q Consensus 109 ---------~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg~~~Lstr~~~lGkL~~G~lv~ 179 (298)
+++|+||+|++. +....+|+++|++||+|.|+|++ +.+.||||+++||+ +.+
T Consensus 81 ~~~~~~~~~~~~Gll~isei~----------~~~~~~~~~~~~~GD~V~akVi~----~~i~LS~k~~~lGv-----v~a 141 (179)
T 3m7n_A 81 KGENRGPSNRGIGILHVSNVD----------EGYVKEISEAVGYLDILKARVIG----DNLRLSTKEEEMGV-----LRA 141 (179)
T ss_dssp TTCCSCCTTCEEEEEEGGGTT----------SSCCSSGGGTCCTTCEEEEEEEE----TTTEEECCSTTCEE-----EEC
T ss_pred cCcccccccCeeEEEEHHHcC----------cchhhCHhhcCCCCCEEEEEEEC----CeEEEEEecCCCCE-----EEe
Confidence 899999999984 11235899999999999999998 78999999999999 666
Q ss_pred eCc
Q psy10116 180 VPP 182 (298)
Q Consensus 180 v~~ 182 (298)
.|+
T Consensus 142 ~~~ 144 (179)
T 3m7n_A 142 LCS 144 (179)
T ss_dssp BCT
T ss_pred ccc
Confidence 663
No 8
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.97 E-value=1.9e-31 Score=239.31 Aligned_cols=142 Identities=20% Similarity=0.271 Sum_probs=121.1
Q ss_pred cCCCeEecCCccCCCCCeeccCCeEecCCeEEEEEeeEEEEe-----CcEEEEEecCc-cccccCCCEEEEEEEEEecce
Q psy10116 28 FTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV-----NQLVSVRAMNS-RYIGEIGEVVVGRVTGLQSQK 101 (298)
Q Consensus 28 ~~~~iV~PGD~I~~~~~~~~G~Gty~~~g~i~Asv~G~v~~~-----nk~v~V~p~~~-rY~P~vGDiVIG~V~~V~~~~ 101 (298)
..+.+|+|||.|+..++|++|+|||.++|+||||++|.+... +++++|.|+++ +|.|++||+|+|+|+++++++
T Consensus 17 ~~~~iV~PGd~l~~~~~~~~G~Gty~~~g~I~Asv~G~v~~~~~~~~~~vi~V~p~~~~~y~p~vGDvV~G~V~~v~~~~ 96 (209)
T 2nn6_I 17 PPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETESQLLPDVGAIVTCKVSSINSRF 96 (209)
T ss_dssp ---CCCCTTCEEEETTTCCCSSSCEEETTEEECCSCSCBCCCBCTTSSBC-CBCCSCCCCCCCCTTCEEEEEEEEECSSE
T ss_pred CCCcEEcCCCCCCCCCCeeecCCEEEECCEEEEEEEEEEEEeccCCcccEEEEecCCCCcCCCCCCCEEEEEEEEEECce
Confidence 346799999999988899999999999999999999999864 35689999987 599999999999999999999
Q ss_pred EEEEeC--------CCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCC-cEEEEeccCCCccC
Q psy10116 102 WVVDTN--------SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEG-SLTLHTRSLKYGKL 172 (298)
Q Consensus 102 ~~VDI~--------s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg-~~~Lstr~~~lGkL 172 (298)
|+|||+ .+++|+||++++. .+..++.+|+++|++||+|+|+|++++.++ .+.||||+++||++
T Consensus 97 a~V~I~~v~~~~L~~~~~GlIhisei~--------~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~LS~k~~~lGVv 168 (209)
T 2nn6_I 97 AKVHILYVGSMPLKNSFRGTIRKEDVR--------ATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVV 168 (209)
T ss_dssp EEEEEEESSSSCCCCSSCSCEEEEGGG--------TCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEECCSSSCEEC
T ss_pred EEEEECccccccccCCceeEEEHHHcc--------cccccccchhhhcCCCCEEEEEEEEEeCCCCeEEEEEecCCCcEE
Confidence 999985 4678999999873 234455689999999999999999998654 59999999999994
Q ss_pred CCceEEEeCc
Q psy10116 173 GQGILLTVPP 182 (298)
Q Consensus 173 ~~G~lv~v~~ 182 (298)
++.|+
T Consensus 169 -----~A~c~ 173 (209)
T 2nn6_I 169 -----VAHSE 173 (209)
T ss_dssp -----CCBCS
T ss_pred -----EEEcC
Confidence 55564
No 9
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.97 E-value=3.6e-09 Score=80.26 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=61.7
Q ss_pred cccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCC-CcEE
Q psy10116 83 IGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTE-GSLT 161 (298)
Q Consensus 83 ~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~d-g~~~ 161 (298)
.|++||+|.|+|+++.+.+|+|+|+...+|++|+|++.. ++ . +.|++||.|.|+|.+++.+ +.+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~-----~~-~--------~~~~~Gd~V~v~V~~vd~~~~~i~ 67 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMIS-----LR-L--------ENLNVGDEIIVQAIDVRPEKREID 67 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSS-----CC-G--------GGCCTTCEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCc-----cc-c--------eeeCCCCEEEEEEEEEECCCCEEE
Confidence 378999999999999999999999989999999999741 11 0 6799999999999999976 8899
Q ss_pred EEeccC
Q psy10116 162 LHTRSL 167 (298)
Q Consensus 162 Lstr~~ 167 (298)
||.+..
T Consensus 68 lsl~~~ 73 (80)
T 2k52_A 68 FKYIPL 73 (80)
T ss_dssp EEECSC
T ss_pred EEEeec
Confidence 998754
No 10
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.89 E-value=7.1e-09 Score=83.95 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=68.1
Q ss_pred cEEEEEecCc-cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEE
Q psy10116 71 QLVSVRAMNS-RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISA 149 (298)
Q Consensus 71 k~v~V~p~~~-rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A 149 (298)
|.+.+.|... .+.|++||++.|+|+++.+.+++|+|+...+|++|+|++.. ..+ ..+....|++||.|.+
T Consensus 14 k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~---~~~------~~~~~~~~~vGd~V~v 84 (115)
T 2khi_A 14 LVPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDW---TNK------NIHPSKVVNVGDVVEV 84 (115)
T ss_dssp -------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSC---SST------TCSSTTTCCTTCEEEE
T ss_pred hhcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCc---ccc------ccCcccEECCCCEEEE
Confidence 3456777776 57899999999999999999999999988999999999842 001 1244678999999999
Q ss_pred EEEEeCC-CCcEEEEeccC
Q psy10116 150 EIHQIST-EGSLTLHTRSL 167 (298)
Q Consensus 150 ~V~sv~~-dg~~~Lstr~~ 167 (298)
+|.+++. ++.+.|+.+..
T Consensus 85 kV~~vd~~~~rI~lslk~~ 103 (115)
T 2khi_A 85 MVLDIDEERRRISLGLKQC 103 (115)
T ss_dssp EEEEEETTTTEEEECCCCC
T ss_pred EEEEEECCCCEEEEEEEec
Confidence 9999986 67899998764
No 11
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.87 E-value=6e-09 Score=86.34 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=63.8
Q ss_pred cccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCC-CCcEE
Q psy10116 83 IGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST-EGSLT 161 (298)
Q Consensus 83 ~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~-dg~~~ 161 (298)
.+++||+|.|+|+++.+.+++|+|....+|+||+|++.. + ...++.+.|++||.|.|+|++++. ++.+.
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~-~---------~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~ 73 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTH-G---------FVKDINEHLSVGDEVQVKVLAVDEEKGKIS 73 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSS-S---------CCSCGGGTCCTTCEEEEEEEEEETTTTEEE
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCc-c---------cccCccccCCCCCEEEEEEEEEeCCCCEEE
Confidence 368999999999999999999999888999999999841 1 123457899999999999999986 78999
Q ss_pred EEecc
Q psy10116 162 LHTRS 166 (298)
Q Consensus 162 Lstr~ 166 (298)
||++.
T Consensus 74 LSlk~ 78 (130)
T 2k4k_A 74 LSIRA 78 (130)
T ss_dssp EESHH
T ss_pred EEEee
Confidence 99864
No 12
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.87 E-value=8e-09 Score=90.58 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=58.7
Q ss_pred cccccCCCEEEEEEEEEecceEEEEe--CCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCC-C
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDT--NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST-E 157 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI--~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~-d 157 (298)
.+.|++||+|.|+|+++.+.+++|+| ....+|++|+|++.- ....+.++.|++||.|.++|++++. .
T Consensus 10 ~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~----------~~v~~~~~~~~vGd~V~VkVl~vD~~~ 79 (182)
T 1kl9_A 10 HKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSR----------RRIRSINKLIRIGRNECVVVIRVDKEK 79 (182)
T ss_dssp SSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC----------------------CTTCEEEEEEEEEETTT
T ss_pred ccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCC----------cccCCHHHhcCCCCEEEEEEEEEECCC
Confidence 35579999999999999999999999 567999999999841 1134568999999999999999985 5
Q ss_pred CcEEEEeccC
Q psy10116 158 GSLTLHTRSL 167 (298)
Q Consensus 158 g~~~Lstr~~ 167 (298)
+.+.||.|..
T Consensus 80 ~rI~LSlk~~ 89 (182)
T 1kl9_A 80 GYIDLSKRRV 89 (182)
T ss_dssp TEEEEESTTC
T ss_pred CEEEEEEeec
Confidence 7899998764
No 13
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=8.8e-09 Score=81.95 Aligned_cols=77 Identities=14% Similarity=0.261 Sum_probs=63.9
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCC---CceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCC
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNS---ILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTE 157 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s---~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~d 157 (298)
...|++||++.|+|+++.+.+++|+|+. ..+|++|+|++.- . .| ..+.++.|++||.|.++|.+++.
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~-~--~~------~~~~~~~~~~Gd~V~VkV~~vd~- 76 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRR-E--GR------VANVADVVSKGQRVKVKVLSFTG- 76 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSS-S--SC------CCCHHHHCCTTCEEEEEEEEEET-
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCC-C--cc------cCCcccEeCCCCEEEEEEEEEEC-
Confidence 4568999999999999999999999986 7899999999821 1 11 13456789999999999999986
Q ss_pred CcEEEEeccC
Q psy10116 158 GSLTLHTRSL 167 (298)
Q Consensus 158 g~~~Lstr~~ 167 (298)
+.+.||.+..
T Consensus 77 ~~i~LSlk~~ 86 (103)
T 2eqs_A 77 TKTSLSMKDV 86 (103)
T ss_dssp TEEEEESTTB
T ss_pred CeeEEEEeec
Confidence 6899998763
No 14
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.83 E-value=8.4e-09 Score=82.62 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=66.6
Q ss_pred EEecCc-cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEE
Q psy10116 75 VRAMNS-RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQ 153 (298)
Q Consensus 75 V~p~~~-rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~s 153 (298)
-.|... ...+++||+|.|+|+++.+.+++|+|+...+|+||++++.. .+ ..++.+.|++||.|.|+|.+
T Consensus 19 ~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~-----~~-----~~~~~~~~~vGd~V~v~V~~ 88 (109)
T 2khj_A 19 SHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASR-----DR-----VEDATLVLSVGDEVEAKFTG 88 (109)
T ss_dssp --CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCS-----SS-----SSSGGGSCCTTCEEEEEEEE
T ss_pred cCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCc-----cc-----ccChhhccCCCCEEEEEEEE
Confidence 344433 45689999999999999999999999988999999999741 11 13457789999999999999
Q ss_pred eCCCC-cEEEEeccC
Q psy10116 154 ISTEG-SLTLHTRSL 167 (298)
Q Consensus 154 v~~dg-~~~Lstr~~ 167 (298)
++.++ .+.||.+..
T Consensus 89 vd~~~~ki~LS~k~~ 103 (109)
T 2khj_A 89 VDRKNRAISLSVRAK 103 (109)
T ss_dssp EETTTTEEEEETTSS
T ss_pred EECCCCEEEEEEeec
Confidence 98664 799998764
No 15
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=8.6e-09 Score=84.29 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=63.9
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCC-CceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCC---
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNS-ILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST--- 156 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s-~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~--- 156 (298)
.+.|++||+|.|+|+++.+.+++|+|.. ..+|+||++++.. .+ ..+..+.|++||.|.++|.+++.
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~-----~~-----~~~~~~~~~~Gd~V~VkV~~vd~~~~ 86 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSS-----CR-----VDKPSEIVDVGDKVWVKLIGREMKND 86 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCS-----SC-----CSCHHHHCCTTCEEEEEEEEEEECSS
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCc-----cc-----ccChhhcCCCCCEEEEEEEEEecccc
Confidence 4779999999999999999999999955 4799999999841 11 13457789999999999999984
Q ss_pred CCcEEEEeccC
Q psy10116 157 EGSLTLHTRSL 167 (298)
Q Consensus 157 dg~~~Lstr~~ 167 (298)
++.+.|+++..
T Consensus 87 ~~~i~LSlk~~ 97 (119)
T 2cqo_A 87 RIKVSLSMKVV 97 (119)
T ss_dssp CEEEEEESTTB
T ss_pred CceEEEEEeec
Confidence 36899998764
No 16
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.80 E-value=1.9e-08 Score=87.55 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=61.3
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeC--CCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCC-C
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTN--SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST-E 157 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~--s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~-d 157 (298)
.+.|++||+|.|+|+++.+.+++|+|. ...+|++|+|++.. ....+.++.|++||.|.++|++++. .
T Consensus 10 ~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~----------~~v~~~~~~~~vGd~V~vkVl~vd~~~ 79 (175)
T 2a19_A 10 NKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSR----------RRIRSIQKLIRVGKNDVAVVLRVDKEK 79 (175)
T ss_dssp SSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC------------------CCCCCCCTTSEEEEEEEEEETTT
T ss_pred hcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCC----------cccCCHHHcCCCCCEEEEEEEEEECCC
Confidence 456889999999999999999999994 67899999999841 1124567899999999999999985 5
Q ss_pred CcEEEEeccC
Q psy10116 158 GSLTLHTRSL 167 (298)
Q Consensus 158 g~~~Lstr~~ 167 (298)
+.+.||.|..
T Consensus 80 ~~I~LSlk~~ 89 (175)
T 2a19_A 80 GYIDLSKRRV 89 (175)
T ss_dssp TEEEEESTTC
T ss_pred CeEEEEEEec
Confidence 7899998764
No 17
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.76 E-value=1.9e-08 Score=87.55 Aligned_cols=85 Identities=26% Similarity=0.328 Sum_probs=68.8
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhh-------hhhhcccCCCCEEEEEEEE
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE-------EMMREFLKEGDLISAEIHQ 153 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~-------~~mr~~~~~GDlV~A~V~s 153 (298)
-|.|++|+++.|+|+++.+.+++|+++ +.+|++|+|++. +. | ...|+ .+..+.|++||.|+++|.+
T Consensus 76 ~~~~~~Gev~~G~V~~v~~~G~fV~l~-~~eglvhis~l~-~~---~--~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 148 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLG-PLDGLIHVSQIM-DD---Y--VSYDPKREAIIGKETGKVLEIGDYVRARIVA 148 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSC-SS---C--EEECCC--CEEETTTCCEECTTCEEEEEEEE
T ss_pred EEccCCCCEEEEEEEEEeCcEEEEEEc-CccEEEEhHHhC-CC---c--ceECCccceEEecCCCeEEcCCCEEEEEEEE
Confidence 367999999999999999999999997 599999999974 21 1 11111 1457889999999999999
Q ss_pred eCC------CCcEEEEeccCCCccC
Q psy10116 154 IST------EGSLTLHTRSLKYGKL 172 (298)
Q Consensus 154 v~~------dg~~~Lstr~~~lGkL 172 (298)
++. .+.+.||.+.++||++
T Consensus 149 vd~~~~~p~~~~I~lS~k~~~LG~~ 173 (187)
T 1go3_E 149 ISLKAERKRGSKIALTMRQPYLGKL 173 (187)
T ss_dssp EECCC-----CEEEEECCSTTCEEH
T ss_pred EEcccCCCCccEEEEEEcCCCCCcH
Confidence 985 3479999999999975
No 18
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.74 E-value=4.5e-08 Score=75.98 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=60.2
Q ss_pred ccCCCEEEEEEEEEecceEEEEeCC--CceeeEecc-cccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCC-CCc
Q psy10116 84 GEIGEVVVGRVTGLQSQKWVVDTNS--ILESALHLT-SVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST-EGS 159 (298)
Q Consensus 84 P~vGDiVIG~V~~V~~~~~~VDI~s--~~~a~L~~s-~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~-dg~ 159 (298)
|++|+++.|+|+ +.+.+++|+|.. ..+|++|+| ++. .....+.++.| +||.|.++|.+++. .+.
T Consensus 9 ~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~----------~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~k 76 (88)
T 1luz_A 9 PNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMH----------MDRYVEYRDKL-VGKTVKVKVIRVDYTKGY 76 (88)
T ss_dssp CCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCC----------HHHHHHHHHHH-TTCEEEEEEEEEETTTTE
T ss_pred CCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhC----------cccccCHhHEe-CCCEEEEEEEEEECCCCE
Confidence 899999999999 999999999974 589999999 984 12234556778 99999999999985 578
Q ss_pred EEEEecc
Q psy10116 160 LTLHTRS 166 (298)
Q Consensus 160 ~~Lstr~ 166 (298)
+.||.|.
T Consensus 77 I~lslk~ 83 (88)
T 1luz_A 77 IDVNYKR 83 (88)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 9999875
No 19
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.73 E-value=3.2e-08 Score=91.89 Aligned_cols=81 Identities=23% Similarity=0.381 Sum_probs=65.4
Q ss_pred ecCccccccCCCEEEEEEEEEecceEEEEeC--CCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEe
Q psy10116 77 AMNSRYIGEIGEVVVGRVTGLQSQKWVVDTN--SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQI 154 (298)
Q Consensus 77 p~~~rY~P~vGDiVIG~V~~V~~~~~~VDI~--s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv 154 (298)
|+...+.|++||+|.|+|+++.+.+++|+|+ ...+|++|+|++.. +| ..+.++.|++||.|.++|.++
T Consensus 2 ~~~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~-----~~-----v~~~~~~~kvGd~V~vkVi~v 71 (275)
T 3aev_A 2 PRKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVAS-----TW-----VRNIRDYLKEGQKVVAKVIRV 71 (275)
T ss_dssp -----CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCS-----SC-----CSCGGGTCCTTCEEEEEEEEE
T ss_pred CcccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCc-----cc-----ccCHHhccCCCCEEEEEEEEE
Confidence 4555678999999999999999999999998 47899999999841 11 234578999999999999999
Q ss_pred CC-CCcEEEEeccC
Q psy10116 155 ST-EGSLTLHTRSL 167 (298)
Q Consensus 155 ~~-dg~~~Lstr~~ 167 (298)
+. ++.+.||.+..
T Consensus 72 D~~~~~I~LSlk~~ 85 (275)
T 3aev_A 72 DPRKGHIDLSLRRV 85 (275)
T ss_dssp ETTTTEEEEESTTC
T ss_pred ECCCCEEEEEEeec
Confidence 85 68899998764
No 20
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.61 E-value=1e-07 Score=82.44 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=68.1
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcc-c-ccchhhhhhhhcccCCCCEEEEEEEEeCC--
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ-R-RRSVQDEEMMREFLKEGDLISAEIHQIST-- 156 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~-R-r~~~~d~~~mr~~~~~GDlV~A~V~sv~~-- 156 (298)
.+.|.+|+++.|+|+++++.+++|+++ +.+|++|+|++. +.-.. - ......-.+....|++||.|++||.+++.
T Consensus 76 v~~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~-~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~ 153 (180)
T 4ayb_E 76 TYVPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQIT-DDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTV 153 (180)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSC-SSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC--
T ss_pred eeeccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecC-CCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCC
Confidence 478999999999999999999999997 689999999974 11100 0 00000002346789999999999999983
Q ss_pred ---CCcEEEEeccCCCccC
Q psy10116 157 ---EGSLTLHTRSLKYGKL 172 (298)
Q Consensus 157 ---dg~~~Lstr~~~lGkL 172 (298)
.+.+.||+|+++||++
T Consensus 154 ~~~~~rI~ls~k~~gLG~~ 172 (180)
T 4ayb_E 154 TGRLPRIALTMRQPYLGKL 172 (180)
T ss_dssp -----CEEEECCSTTCEEH
T ss_pred CcccCcEEEEcCCCCCCCC
Confidence 3468999999999985
No 21
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.58 E-value=2.1e-07 Score=75.56 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=61.9
Q ss_pred cccCCCEEEEEEEEEecceEEEEeC-CCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCC-CcE
Q psy10116 83 IGEIGEVVVGRVTGLQSQKWVVDTN-SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTE-GSL 160 (298)
Q Consensus 83 ~P~vGDiVIG~V~~V~~~~~~VDI~-s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~d-g~~ 160 (298)
.+++||++.|+|+++.+.+|+|||+ ....++++.+... ......+.++.|++||.|.++|.+++.+ +.+
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i 88 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQ---------EYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVV 88 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHH---------HHHHHHSSSCCCCTTCEEEEEEEECCTTSCEE
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEeccc---------ccccccCccCEeCCCCEEEEEEEEEeCCCCEE
Confidence 4789999999999999999999998 3444554433321 0001123468999999999999999854 689
Q ss_pred EEEeccCCCccC
Q psy10116 161 TLHTRSLKYGKL 172 (298)
Q Consensus 161 ~Lstr~~~lGkL 172 (298)
.|+.+...+|+-
T Consensus 89 ~Lslk~~~l~~~ 100 (119)
T 1wi5_A 89 SLSVGHSEVSTA 100 (119)
T ss_dssp EEECCCCCSCCC
T ss_pred EEEEchhhcccc
Confidence 999999999873
No 22
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.54 E-value=1.8e-07 Score=88.13 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=64.4
Q ss_pred ccccCCCEEEEEEEEEecceEEEEeC--CCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCC-CC
Q psy10116 82 YIGEIGEVVVGRVTGLQSQKWVVDTN--SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST-EG 158 (298)
Q Consensus 82 Y~P~vGDiVIG~V~~V~~~~~~VDI~--s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~-dg 158 (298)
..|++||+|.|+|+++.+.+|+|+|+ ...+|++|+|++.. +| ..+.++.|++||.|.++|++++. .+
T Consensus 9 ~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~-----~~-----i~~~~~~~kvGd~V~VkVl~vD~~~~ 78 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSR-----RR-----IRSINKLIRIGRNECVKVIRVDKEKG 78 (308)
T ss_dssp CCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSC-----SS-----CSCCTTTCSSSCEEEEEEEEEETTTT
T ss_pred cCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCc-----cc-----ccCHHHhcCCCCEEEEEEEEEeCCCC
Confidence 34789999999999999999999997 67999999999841 11 23467899999999999999985 57
Q ss_pred cEEEEeccC
Q psy10116 159 SLTLHTRSL 167 (298)
Q Consensus 159 ~~~Lstr~~ 167 (298)
.+.||.|..
T Consensus 79 rI~LSlK~~ 87 (308)
T 1q8k_A 79 YIDLSKRRV 87 (308)
T ss_dssp EEEEECSSC
T ss_pred EEEEEEEec
Confidence 899998764
No 23
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.50 E-value=8.3e-08 Score=88.62 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=67.3
Q ss_pred CccccccCCCEEEEEEEEEecceEEEEeC--CCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCC
Q psy10116 79 NSRYIGEIGEVVVGRVTGLQSQKWVVDTN--SILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST 156 (298)
Q Consensus 79 ~~rY~P~vGDiVIG~V~~V~~~~~~VDI~--s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~ 156 (298)
...+.|++||+|.|+|+++.+.+++|+|+ ...+|+||+|++.. ++ ..+.++.|++||.|.++|.+++.
T Consensus 4 ~~~~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~-----~~-----v~~~~~~~~vGd~V~VkVi~vd~ 73 (266)
T 3cw2_C 4 SRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSS-----KW-----VKNIRDVLKENRKVIVKVIRVDR 73 (266)
T ss_dssp CSSSSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSC-----SS-----CCCHHHHSCTTCEEEEEECCCCS
T ss_pred cccccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCc-----cc-----ccCHHHhCcCCCEEEEEEEEEeC
Confidence 34678999999999999999999999997 67999999999841 11 23457889999999999999985
Q ss_pred -CCcEEEEeccCC
Q psy10116 157 -EGSLTLHTRSLK 168 (298)
Q Consensus 157 -dg~~~Lstr~~~ 168 (298)
++.+.||.|...
T Consensus 74 ~~g~I~LSlk~~~ 86 (266)
T 3cw2_C 74 RKGTVDVSLKKVT 86 (266)
T ss_dssp SSCCCBEESTTSC
T ss_pred CCCEEEEEEEecc
Confidence 688999987653
No 24
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.47 E-value=7.7e-07 Score=76.48 Aligned_cols=86 Identities=13% Similarity=-0.003 Sum_probs=64.4
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhh-------hhhhcccCCCCEEEEEEEE
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDE-------EMMREFLKEGDLISAEIHQ 153 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~-------~~mr~~~~~GDlV~A~V~s 153 (298)
.+.|++|+++.|+|+++++.+|+|+|+ +.+|++|+|++. ..- + .+..+ ...+..|++||.|+++|.+
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~--~~~--~-~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIP--SEM--E-FDPNSNPPCYKTMDEDIVIQQDDEIRLKIVG 149 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSC--TTE--E-EESSSSSCEEEETTSCSEEETTCEEEEEEEE
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCC--CCc--E-ECCCCCccEEEeCCCCEEECCCCEEEEEEEE
Confidence 466999999999999999999999996 677999999863 210 0 00000 1225689999999999999
Q ss_pred eCCC---CcEEEEeccCCCccC
Q psy10116 154 ISTE---GSLTLHTRSLKYGKL 172 (298)
Q Consensus 154 v~~d---g~~~Lstr~~~lGkL 172 (298)
++.+ ....-|+++++||++
T Consensus 150 vd~~~~~~~~igsm~~~~LG~~ 171 (172)
T 2c35_B 150 TRVDKNDIFAIGSLMDDYLGLV 171 (172)
T ss_dssp EEEETTEEEEEEECCSTTCEEC
T ss_pred EEcCCCCcEEEEEecCCCCCCC
Confidence 9843 223337899999986
No 25
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.36 E-value=9e-07 Score=76.14 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=62.7
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhh-----hhhcccCCCCEEEEEEEEeC
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEE-----MMREFLKEGDLISAEIHQIS 155 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~-----~mr~~~~~GDlV~A~V~sv~ 155 (298)
-+.|.+|+++.|+|+++.+.+++|+++. .+|++|+|++. ..- + .+.... .-++.|++||.|+++|.+++
T Consensus 78 ~~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~--~~~--~-~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 151 (171)
T 1y14_B 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMP--QDL--T-FNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 151 (171)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSC--TTC--E-ECC-----CEECSSCEECTTCEEEEEEEEEE
T ss_pred EccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCC--CCc--e-ECcccCceEEeccceEECCCCEEEEEEEEEE
Confidence 3568999999999999999999999986 99999999873 210 1 000000 00267999999999999998
Q ss_pred CCC----cEEEEeccCCCccC
Q psy10116 156 TEG----SLTLHTRSLKYGKL 172 (298)
Q Consensus 156 ~dg----~~~Lstr~~~lGkL 172 (298)
.+. .+. |+++++||++
T Consensus 152 ~~~~~~~~ig-sm~~~~LG~~ 171 (171)
T 1y14_B 152 SQVSSIHAIG-SIKEDYLGAI 171 (171)
T ss_dssp EETTEEEEEE-ECCSTTCEEC
T ss_pred cCCCCcEEEE-EcCCCCCCCC
Confidence 432 234 6788899863
No 26
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.34 E-value=1.7e-06 Score=80.59 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=63.7
Q ss_pred cCCCEEEEEEEEEecceEEE-EeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCC-CCcEEE
Q psy10116 85 EIGEVVVGRVTGLQSQKWVV-DTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST-EGSLTL 162 (298)
Q Consensus 85 ~vGDiVIG~V~~V~~~~~~V-DI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~-dg~~~L 162 (298)
++||+|-|+|.++++.+++| +++..++|++|.|++. ..+++||.|.|+|++++. ++.+.|
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~------------------~~l~~Gd~v~~~V~~id~~d~kI~L 212 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY------------------AEPRLGQVLDARVIGFREVDRTLNL 212 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS------------------SCCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHcc------------------ccCCCCCEEEEEEEEEECCCCeEEE
Confidence 68999999999999999999 9999999999999973 459999999999999997 899999
Q ss_pred EeccCCCccC
Q psy10116 163 HTRSLKYGKL 172 (298)
Q Consensus 163 str~~~lGkL 172 (298)
|.|...+..+
T Consensus 213 Slk~~~~~~~ 222 (285)
T 3go5_A 213 SLKPRSFEML 222 (285)
T ss_dssp ECSCCCCCCC
T ss_pred EeChhhhhcc
Confidence 9998877543
No 27
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.32 E-value=3.2e-07 Score=79.26 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=65.6
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhh-----hhhhhcccCCCCEEEEEEEEeC
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQD-----EEMMREFLKEGDLISAEIHQIS 155 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d-----~~~mr~~~~~GDlV~A~V~sv~ 155 (298)
-+.|.+|+++.|+|+++++.+++|+++ +.+|++|+|++. ..- ..+.+ -.+....+++||.|+++|.+++
T Consensus 79 vf~p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~--~~~---~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd 152 (172)
T 3h0g_G 79 LWRPFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVP--PDM---KFDPTANPPNYSGEDQVIEKGSNVRLKIVGTR 152 (172)
T ss_dssp EECCCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSC--TTC---CCBSSSSSCBEESSSCEECSSCCEEEEEEEEE
T ss_pred eeccCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCC--Ccc---ccCcccccceEecCCcEECCCCEEEEEEEEEE
Confidence 467999999999999999999999997 677999999873 210 00000 0223578999999999999998
Q ss_pred CCC----cEEEEeccCCCccC
Q psy10116 156 TEG----SLTLHTRSLKYGKL 172 (298)
Q Consensus 156 ~dg----~~~Lstr~~~lGkL 172 (298)
.+. .+. |+|+++||+|
T Consensus 153 ~~~~~~~~Ig-tm~~~~LG~~ 172 (172)
T 3h0g_G 153 TDATEIFAIA-TMKEDYLGVL 172 (172)
T ss_dssp ESSSCEEEEE-ECCSTTCEEC
T ss_pred CCCCCceEEE-EcCCCCCCCC
Confidence 432 455 7899999985
No 28
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.20 E-value=2.1e-06 Score=76.93 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=64.2
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhh-------hcccCCCCEEEEEEEE
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMM-------REFLKEGDLISAEIHQ 153 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~m-------r~~~~~GDlV~A~V~s 153 (298)
-+.|++|+++.|+|+++.+.+++|+|+. .+|++|+|++. ..- + .|+.+. ++.+++||.|..+|.+
T Consensus 78 ~~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~--d~~--~---~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMP--QDL--T---FNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSC--SSC--C---CBSSCSSCEEECSSCEEETTCEEEEEEEE
T ss_pred eeccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCC--ccc--e---eccccccceeeccccEECCCCEEEEEEEE
Confidence 3568999999999999999999999986 99999999873 110 0 011000 1679999999999999
Q ss_pred eCCCC----cEEEEeccCCCccCC
Q psy10116 154 ISTEG----SLTLHTRSLKYGKLG 173 (298)
Q Consensus 154 v~~dg----~~~Lstr~~~lGkL~ 173 (298)
++.+. .+. |+++++||.++
T Consensus 150 vd~~~~~i~~Ig-Smk~~~LG~~~ 172 (215)
T 2b8k_G 150 CISQVSSIHAIG-SIKEDYLGAIS 172 (215)
T ss_dssp EEEETTEEEEEE-ECCSTTCEEC-
T ss_pred EEcCCCccEEEE-EcCCCCCCCcc
Confidence 98432 355 78999999864
No 29
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.01 E-value=7.5e-07 Score=92.39 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred ccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCCcEE
Q psy10116 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLT 161 (298)
Q Consensus 82 Y~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg~~~ 161 (298)
..|++|+++.|+|+++.+.+++|+|....+|++|+|++.- ....+..+.|++||.|.++|.+++.++.+.
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~----------~rv~~~~d~~kvGD~V~VkVi~iD~~grI~ 702 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISN----------ERVAKPSDVLKEGQMVKVKLLGFDDRGKTK 702 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCc----------ccccCccccCCCCCEEEEEEEEECCCCcEE
Confidence 3589999999999999999999999888999999999841 123466889999999999999999888999
Q ss_pred EEeccC
Q psy10116 162 LHTRSL 167 (298)
Q Consensus 162 Lstr~~ 167 (298)
||.|..
T Consensus 703 LS~K~~ 708 (726)
T 4aid_A 703 LSMKVV 708 (726)
T ss_dssp ------
T ss_pred EEEeec
Confidence 998763
No 30
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.95 E-value=0.0002 Score=63.30 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=65.7
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcc-c--cc-------chhhhhhhhcccCCCCEEEEE
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ-R--RR-------SVQDEEMMREFLKEGDLISAE 150 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~-R--r~-------~~~d~~~mr~~~~~GDlV~A~ 150 (298)
-+.|.+|+++.|+|+++++.+++|+++ +.++++|.++.. |.... . +. .+.+...-+..|+.||.|+.|
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~-~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~Vrvr 153 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDML-FDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQ 153 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGB-CTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEE
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhC-CCCceECccCceEEeecccccccccCCcEEcCCCEEEEE
Confidence 466999999999999999999999996 789999999873 32110 0 00 000002236789999999999
Q ss_pred EEEeCCC------------------------CcEEEEeccCCCccC
Q psy10116 151 IHQISTE------------------------GSLTLHTRSLKYGKL 172 (298)
Q Consensus 151 V~sv~~d------------------------g~~~Lstr~~~lGkL 172 (298)
|.+++-+ ..+..|+++++||.+
T Consensus 154 V~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~~ 199 (203)
T 3ayh_B 154 IESEDFVDISPKRNKNATAITGTEALESVSPYTLIASCSRDGLGIP 199 (203)
T ss_dssp EEEEEECC--------------------CCSEEEEEEBCSTTCBCG
T ss_pred EEEEEccccCCCCccccccccccccccCCCCeEEEEEecCCCCcee
Confidence 9998731 126778899999986
No 31
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.83 E-value=2.3e-05 Score=85.36 Aligned_cols=77 Identities=14% Similarity=0.061 Sum_probs=64.3
Q ss_pred ccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeC-CCCcE
Q psy10116 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIS-TEGSL 160 (298)
Q Consensus 82 Y~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~-~dg~~ 160 (298)
-..++|++|-|+|+.|.+.+++|+|+...+|++|+|++.- ++ ...+.++.|++||.|.|+|++++ ..+.+
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd-----~~----~v~~p~~v~kvGd~V~vkVl~VD~~~~rI 968 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAG-----AQ----LRRPANEIYEIGKTYPAKVIYIDYANITA 968 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSS-----TT----SCSCSTTTSCTTCEEEEEEEEEEGGGTEE
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCC-----Cc----ccCCHHHcCCCCCEEEEEEEEEECCCCEE
Confidence 4578999999999999999999999989999999999851 11 02344688999999999999998 45789
Q ss_pred EEEeccC
Q psy10116 161 TLHTRSL 167 (298)
Q Consensus 161 ~Lstr~~ 167 (298)
.||+|..
T Consensus 969 ~LSlk~~ 975 (1219)
T 3psi_A 969 EVSLLDH 975 (1219)
T ss_dssp EEECCHH
T ss_pred EEEecHH
Confidence 9998753
No 32
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.82 E-value=2.5e-05 Score=71.51 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=57.2
Q ss_pred cccccCCCEEEEEEEE----EecceEEEEeCC---CceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEE
Q psy10116 81 RYIGEIGEVVVGRVTG----LQSQKWVVDTNS---ILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQ 153 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~----V~~~~~~VDI~s---~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~s 153 (298)
.|..++||+|.|+|.. +..+.+.|||+. ..+|+||.++. .| ++.|++||.|.|.|..
T Consensus 2 ~~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eq-ip---------------~E~~~~GDrIkayV~~ 65 (251)
T 2asb_A 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQ-VP---------------GESYEHGNRLRCYVVG 65 (251)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGS-CT---------------TCCCCTTCEEEEEEEE
T ss_pred chhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHc-CC---------------CccCCCCCEEEEEEEE
Confidence 4888999999999999 899999999997 58999998876 34 5789999999999999
Q ss_pred eCCC---CcEEEEec
Q psy10116 154 ISTE---GSLTLHTR 165 (298)
Q Consensus 154 v~~d---g~~~Lstr 165 (298)
+... +.+.||-.
T Consensus 66 V~~~~~gpqIiLSRt 80 (251)
T 2asb_A 66 VTRGAREPLITLSRT 80 (251)
T ss_dssp EECCSSSCEEEEESS
T ss_pred EEcCCCCCEEEEEec
Confidence 9743 45777743
No 33
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.80 E-value=3.7e-05 Score=73.40 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=58.1
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCC---
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTE--- 157 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~d--- 157 (298)
.|..+.||+|.|+|..+..+.++||+| ..+|+||.+++. | ++.|++||.|.|.|.+++.+
T Consensus 129 e~~~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~sE~i-p---------------~E~~~vGD~Vkv~V~~V~~~~kg 191 (344)
T 1hh2_P 129 KYSELKGTVTTAEVIRVMGEWADIRIG-KLETRLPKKEWI-P---------------GEEIKAGDLVKVYIIDVVKTTKG 191 (344)
T ss_dssp CTTCCTTCEEEEEEEEECSSEEEEEET-TEEEEEEGGGSC-T---------------TCCCCTTCEEEEEEEEEEEETTE
T ss_pred HHhhcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHHHcC-C---------------CcCCCCCCEEEEEEEEEEcCCCC
Confidence 477889999999999999999999998 789999999873 4 46899999999999999732
Q ss_pred CcEEEEec
Q psy10116 158 GSLTLHTR 165 (298)
Q Consensus 158 g~~~Lstr 165 (298)
+.+.||-+
T Consensus 192 ~~I~LSRt 199 (344)
T 1hh2_P 192 PKILVSRR 199 (344)
T ss_dssp EEEEEESS
T ss_pred cEEEEEee
Confidence 35777744
No 34
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.74 E-value=1.3e-05 Score=83.84 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=64.5
Q ss_pred cccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCC-CCcEE
Q psy10116 83 IGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIST-EGSLT 161 (298)
Q Consensus 83 ~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~-dg~~~ 161 (298)
..++|++|-|+|++|.+.+++|+|+...+|++|+|++.. + ...+.++.|++||.|.++|.+++. .+.+.
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd-----~-----~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~ 720 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSE-----K-----FVKDPYEVVKAGDIVKVKVMEVDIPRNRVG 720 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCS-----S-----CCSCHHHHCCTTCCCCCBEEEEETTTTEEE
T ss_pred hcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCc-----c-----ccCChhheeCCCCEEEEEEEEEECCCCEEE
Confidence 468999999999999999999999988899999999841 1 122357889999999999999985 57899
Q ss_pred EEeccCC
Q psy10116 162 LHTRSLK 168 (298)
Q Consensus 162 Lstr~~~ 168 (298)
||++...
T Consensus 721 LSlk~~~ 727 (785)
T 3bzc_A 721 LSMRMSD 727 (785)
T ss_dssp ECCSSCC
T ss_pred EEEecCC
Confidence 9998654
No 35
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.67 E-value=6e-06 Score=85.73 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=0.0
Q ss_pred ccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCCcEE
Q psy10116 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLT 161 (298)
Q Consensus 82 Y~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg~~~ 161 (298)
..|++|+++.|+|+++.+.+++|+|....+|++|+|++.- ....+..+.|++||.|.++|.+++.++.+.
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~----------~~v~~~~~~~~vGd~V~VkVi~vd~~grI~ 692 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD----------KRVEKVTDYLQMGQEVPVKVLEVDRQGRIR 692 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCC----------ccccCcccccCCCCEEEEEEEEECCCCcEE
Confidence 4589999999999999999999999888999999999841 113456788999999999999998788899
Q ss_pred EEeccC
Q psy10116 162 LHTRSL 167 (298)
Q Consensus 162 Lstr~~ 167 (298)
||.+..
T Consensus 693 LS~k~~ 698 (723)
T 3cdi_A 693 LSIKEA 698 (723)
T ss_dssp ------
T ss_pred EEEEec
Confidence 998753
No 36
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.62 E-value=7.7e-06 Score=87.70 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=0.0
Q ss_pred cccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeC-CCCcEE
Q psy10116 83 IGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIS-TEGSLT 161 (298)
Q Consensus 83 ~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~-~dg~~~ 161 (298)
..++|++|-|+|+.|.+.+++|+|+...+|++|+|++.- ++ ...+..+.|++||.|.|+|++++ ..+.+.
T Consensus 902 ~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd-----~~----~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~ 972 (1030)
T 3psf_A 902 TFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAG-----AQ----LRRPANEIYEIGKTYPAKVIYIDYANITAE 972 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCC-----Cc----ccCCHHHcCCCCCEEEEEEEEEECCCCEEE
Confidence 468999999999999999999999988999999999841 00 12445788999999999999998 567899
Q ss_pred EEeccCCC
Q psy10116 162 LHTRSLKY 169 (298)
Q Consensus 162 Lstr~~~l 169 (298)
||+|...+
T Consensus 973 LSlk~~dl 980 (1030)
T 3psf_A 973 VSLLDHDV 980 (1030)
T ss_dssp --------
T ss_pred EEechHHh
Confidence 99887654
No 37
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.60 E-value=7.7e-05 Score=71.71 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=56.1
Q ss_pred cccccCCCEEEEEEEE----EecceEEEEeCC---CceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEE
Q psy10116 81 RYIGEIGEVVVGRVTG----LQSQKWVVDTNS---ILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQ 153 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~----V~~~~~~VDI~s---~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~s 153 (298)
.|..++||+|.|+|.. +..+.++||||. ..+|+||.++.. | ++.|++||.|.|.|.+
T Consensus 125 ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi-P---------------~E~~~~GDrVkvyV~~ 188 (366)
T 1k0r_A 125 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-P---------------GESYEHGNRLRCYVVG 188 (366)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC-T---------------TCCCCTTCEEEEEEEE
T ss_pred HHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC-C---------------CccCCCCCEEEEEEEE
Confidence 5889999999999999 999999999997 589999998863 4 4789999999999999
Q ss_pred eCCC---CcEEEE
Q psy10116 154 ISTE---GSLTLH 163 (298)
Q Consensus 154 v~~d---g~~~Ls 163 (298)
+..+ +.+.||
T Consensus 189 V~~~~kgpqI~LS 201 (366)
T 1k0r_A 189 VTRGAREPLITLS 201 (366)
T ss_dssp EECCSSSCEEEEE
T ss_pred EecCCCccEEEEE
Confidence 9853 346666
No 38
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.48 E-value=8.4e-06 Score=85.00 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=37.9
Q ss_pred ccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccc----cCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCC
Q psy10116 82 YIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSV----NLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTE 157 (298)
Q Consensus 82 Y~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v----~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~d 157 (298)
..|++|+++.|+|+++.+.+++|+|....+|++|+|++ .- ....+..+.|++||.|.++|.+++.+
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~----------~rv~~~~~~~~vGd~V~VkVi~vd~~ 732 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGG----------KRVENVEDVLGVGQKVQVEIAEIDSR 732 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-----------------------------CCSSCBCCCCCCCCCSS
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCC----------CcccCcccccCCCCEEEEEEEEECCC
Confidence 56899999999999999999999998789999999998 31 11245678999999999999999888
Q ss_pred CcEEEEeccC
Q psy10116 158 GSLTLHTRSL 167 (298)
Q Consensus 158 g~~~Lstr~~ 167 (298)
+.+.||.+..
T Consensus 733 grI~LS~k~~ 742 (757)
T 1e3p_A 733 GKLSLIPVIE 742 (757)
T ss_dssp CC--------
T ss_pred CCEEEEEecC
Confidence 8899998754
No 39
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.25 E-value=0.00092 Score=62.10 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=54.8
Q ss_pred ccCCCEEEEEEEEEe-cceEEEEeCC-CceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeCCCCcEE
Q psy10116 84 GEIGEVVVGRVTGLQ-SQKWVVDTNS-ILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLT 161 (298)
Q Consensus 84 P~vGDiVIG~V~~V~-~~~~~VDI~s-~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~~dg~~~ 161 (298)
-++|+++.|+|++++ +.+++||++- ..++++|+|++.. .+ ...+++||.+.+. +.++..+.+.
T Consensus 67 ~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~-----~~---------~~~~~~Gd~v~v~-l~iD~~~Ri~ 131 (285)
T 3go5_A 67 ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPE-----LK---------ELWPKKGDQLYIR-LEVDKKDRIW 131 (285)
T ss_dssp SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCS-----SG---------GGSCCTTCEEEEE-EEECTTSCEE
T ss_pred ccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCc-----cc---------ccccCCCCEEEEE-EEECCCCcEE
Confidence 379999999999999 7999999997 4899999998731 11 2357999999765 5788777899
Q ss_pred EEec
Q psy10116 162 LHTR 165 (298)
Q Consensus 162 Lstr 165 (298)
||+|
T Consensus 132 ls~k 135 (285)
T 3go5_A 132 GLLA 135 (285)
T ss_dssp EEEC
T ss_pred EEeh
Confidence 9985
No 40
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.20 E-value=0.0021 Score=64.35 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=62.8
Q ss_pred EEEEecCccccccCCCEEEEEEEEEecc--eEEEEeCCCceeeEecccccCCCCcccccch---hhhhhhhcccCCCCEE
Q psy10116 73 VSVRAMNSRYIGEIGEVVVGRVTGLQSQ--KWVVDTNSILESALHLTSVNLPGGEQRRRSV---QDEEMMREFLKEGDLI 147 (298)
Q Consensus 73 v~V~p~~~rY~P~vGDiVIG~V~~V~~~--~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~---~d~~~mr~~~~~GDlV 147 (298)
+.+++... .+.+|++..|+|+.+.+. .+||||+...+|+||++++. |. +-... ....++.+.+++||.|
T Consensus 34 l~iE~~~~--~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~-~~---~~~~~~~~~~~~~i~d~lk~Gq~V 107 (517)
T 2bx2_L 34 LDIESPGH--EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA-RE---YFPANYSAHGRPNIKDVLREGQEV 107 (517)
T ss_dssp EEEECSSS--CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSC-GG---GCC-------CCCGGGTCCTTCEE
T ss_pred EEEecCCC--cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcC-hh---hhccccccccccchhhhccCCCEE
Confidence 34444333 457999999999999999 99999999999999999984 11 10000 0122466889999999
Q ss_pred EEEEEEeCCC-CcEEEEec
Q psy10116 148 SAEIHQISTE-GSLTLHTR 165 (298)
Q Consensus 148 ~A~V~sv~~d-g~~~Lstr 165 (298)
..+|...... ..+.|||.
T Consensus 108 lVQV~Ke~~g~KGa~lTt~ 126 (517)
T 2bx2_L 108 IVQIDKEERGNKGAALTTF 126 (517)
T ss_dssp EEEEEECCCTTCCCEEESS
T ss_pred EEEEEeeccccCCceEEee
Confidence 9999997632 34778764
No 41
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.011 Score=52.88 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=54.5
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcc-c--ccchhh--hhhhhcccCCCCEEEEEEEEeC
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ-R--RRSVQD--EEMMREFLKEGDLISAEIHQIS 155 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~-R--r~~~~d--~~~mr~~~~~GDlV~A~V~sv~ 155 (298)
-+.|.+|+++.|+|++++..+++|.+..+.+|+++++++. |..-. . +..-.. ...-+..|+.||.|+.||.+++
T Consensus 76 ~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~-~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~ 154 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNML-FEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTS-CTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEE
T ss_pred EecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHC-CCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEE
Confidence 4679999999999999999999999954789999999873 32210 0 000000 0223678999999999999987
No 42
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=94.25 E-value=0.036 Score=43.43 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=35.9
Q ss_pred cccCCCEEEEEEEEEecceEEEEeCCCceeeEeccccc
Q psy10116 83 IGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVN 120 (298)
Q Consensus 83 ~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~ 120 (298)
.|++|+.|.|.|+.+.+.+++|+|....+|++|+|++.
T Consensus 58 ~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~ 95 (101)
T 2bh8_A 58 NPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS 95 (101)
T ss_dssp CCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCc
Confidence 79999999999999999999999987899999999984
No 43
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=94.21 E-value=0.33 Score=37.88 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=48.7
Q ss_pred cccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccchhhhhh-hhcccCCCCEEEEE
Q psy10116 83 IGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEM-MREFLKEGDLISAE 150 (298)
Q Consensus 83 ~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~-mr~~~~~GDlV~A~ 150 (298)
.|..|+...+.|+++.++.+.|-+.....+.|+..++..- |+ ......+ ..+.|++||+|+.+
T Consensus 30 ~~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA----~~-~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 30 IGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAA----HR-FLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp SCTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTT----GG-GTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhh----hh-cccccccchhccCCCCCEEEEE
Confidence 5778999999999999999999997777788888877531 22 1112234 57889999999998
No 44
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=93.85 E-value=0.13 Score=52.51 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=57.4
Q ss_pred cccCCC--EEEEEEEEEecceEEEEeC-CCceeeEecccccCCCCcccccchhhhh----hhhcccCCCCEEEEEEEEeC
Q psy10116 83 IGEIGE--VVVGRVTGLQSQKWVVDTN-SILESALHLTSVNLPGGEQRRRSVQDEE----MMREFLKEGDLISAEIHQIS 155 (298)
Q Consensus 83 ~P~vGD--iVIG~V~~V~~~~~~VDI~-s~~~a~L~~s~v~~pgg~~Rr~~~~d~~----~mr~~~~~GDlV~A~V~sv~ 155 (298)
.+++|+ ..-|+|+++...+++|.|. ...+|++|+|++..... .-..+.... .....|++||.|..+|.+++
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d--~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd 632 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD--ELVCSQENGTVQIKGETVYKVTDVIDVTIAEVR 632 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGG--GEEEETTTTEEEETTEEEEETTCEEEEEEEEEE
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCc--eeEEcccccEEEecCCCEeCCCCEEEEEEEEEe
Confidence 478999 9999999999999999994 56899999998731000 000000011 22467999999999999998
Q ss_pred C-CCcEEEEe
Q psy10116 156 T-EGSLTLHT 164 (298)
Q Consensus 156 ~-dg~~~Lst 164 (298)
. .+.+.++.
T Consensus 633 ~~~~~I~~~l 642 (644)
T 2id0_A 633 METRSIIARP 642 (644)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 5 46676653
No 45
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=89.89 E-value=0.33 Score=50.56 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=51.1
Q ss_pred ccccCCCEEEEEEEEEecceEEEEeCC-CceeeEecccccCCCCcccccchhhh-------hh----hhcccCCCCEEEE
Q psy10116 82 YIGEIGEVVVGRVTGLQSQKWVVDTNS-ILESALHLTSVNLPGGEQRRRSVQDE-------EM----MREFLKEGDLISA 149 (298)
Q Consensus 82 Y~P~vGDiVIG~V~~V~~~~~~VDI~s-~~~a~L~~s~v~~pgg~~Rr~~~~d~-------~~----mr~~~~~GDlV~A 149 (298)
|+=...+..-|+|+++...+++|.|.. ..+|.+|++++.-|.. . ...|+ .. ....|++||.|.+
T Consensus 665 ~l~~~~~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d--~--~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~V 740 (760)
T 2vnu_D 665 VMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPN--S--AAFDEVEYKLTFVPTNSDKPRDVYVFDKVEV 740 (760)
T ss_dssp HHHTCCSEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGG--G--CEEETTTTEEEECCTTCSSCEEEETTCEEEE
T ss_pred HhhcCceEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCc--e--eEEcccccEEEEecCCCccCcEEecCCEEEE
Confidence 443333899999999999999999976 6899999998731110 0 00010 01 1478999999999
Q ss_pred EEEEeCCC----CcEEEEe
Q psy10116 150 EIHQISTE----GSLTLHT 164 (298)
Q Consensus 150 ~V~sv~~d----g~~~Lst 164 (298)
+|.+++.+ +.+.|+.
T Consensus 741 kV~~vd~~~~~~~kI~lsl 759 (760)
T 2vnu_D 741 QVRSVMDPITSKRKAELLL 759 (760)
T ss_dssp EEC--------CCEEEC--
T ss_pred EEEEEECccccCCcEEEEe
Confidence 99999854 5666654
No 46
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=86.88 E-value=0.99 Score=48.34 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=56.9
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCC-CceeeEecccccCCCCcccccchhhh-------hh----hhcccCCCCEEE
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNS-ILESALHLTSVNLPGGEQRRRSVQDE-------EM----MREFLKEGDLIS 148 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s-~~~a~L~~s~v~~pgg~~Rr~~~~d~-------~~----mr~~~~~GDlV~ 148 (298)
.|+-..|...-|+|+++...+++|.|.. ..+|.+|++++.-|... ...|+ .. ....|+.||.|.
T Consensus 881 ~~l~~~ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~----y~fde~~~~L~g~~~~g~~~~~~~lGD~V~ 956 (977)
T 2wp8_J 881 QVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNS----AAFDEVEYKLTFVPTNSDKPRDVYVFDKVE 956 (977)
T ss_dssp HHHHHTTCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGG----CEEETTTTEEEECCTTCCSCEEEETTCEEE
T ss_pred hhhcccceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCce----eEEcccccEEEeecCCCccCcEEccCCEEE
Confidence 3543339999999999999999999976 68999999987411100 00011 00 246899999999
Q ss_pred EEEEEeCCC----CcEEEEe
Q psy10116 149 AEIHQISTE----GSLTLHT 164 (298)
Q Consensus 149 A~V~sv~~d----g~~~Lst 164 (298)
.+|.+++.. +.+.|+.
T Consensus 957 VkV~~vd~~~~~~~kI~Lsl 976 (977)
T 2wp8_J 957 VQVRSVMDPITSKRKAELLL 976 (977)
T ss_dssp EEECCCCCSSSCCCCCCEEE
T ss_pred EEEEEEcCcccCCCceEEEe
Confidence 999998752 5676665
No 47
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=85.87 E-value=1.2 Score=34.25 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=34.6
Q ss_pred ccEEEEEeeCceEEEecCCC-CCCCccccccccCCHHHHHHHH
Q psy10116 197 CGAQVILGCNGYVWVSAIDE-NKSGGFIQNMEVVKLSDRETIT 238 (298)
Q Consensus 197 ~~~eiivG~NG~IWI~~~~~-~~~~~~~~~~~~i~~~~r~~i~ 238 (298)
-++.|+=|.|| +||.-++. ..++.|.+...|++.+.|+.|.
T Consensus 35 ~~ikVieg~~G-lFVaMPs~k~~~g~y~Di~hPit~e~Re~i~ 76 (87)
T 2i9x_A 35 HDLRVIEGNSG-LFVAMPSKRTPDGEFRDIAHPINSDMRQEIQ 76 (87)
T ss_dssp EEEEEEEETTE-EEEECCEEECTTSCEEECEEECSHHHHHHHH
T ss_pred eeEEEEECCCc-eEEECCCcCCCCCCEEEEEEECCHHHHHHHH
Confidence 47999999999 99998876 3456787888999999999985
No 48
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=83.83 E-value=2 Score=33.80 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=42.4
Q ss_pred ccEEEEEeeCceEEEecCCC-CCCCccccccccCCHHHHHHHHHHHHHHHHHhhCCcccCHHHHHHHHHHHh
Q psy10116 197 CGAQVILGCNGYVWVSAIDE-NKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267 (298)
Q Consensus 197 ~~~eiivG~NG~IWI~~~~~-~~~~~~~~~~~~i~~~~r~~i~rv~n~i~~l~~~~~~i~~~~i~~~~~~s~ 267 (298)
-++.|+=|.|| +||.-++. ..++.|.+...|++.+.|+.|. +.|+.+|+.++
T Consensus 35 ~dIkVieg~~G-lFVaMPSrk~~~Gey~DI~hPit~e~Re~i~------------------~aVl~aY~~~~ 87 (100)
T 2ia9_A 35 HDIRVIDGNNG-LFVAMPSKRTPDGEFRDITHPINSSTRGKIQ------------------DAVLNEYHRLG 87 (100)
T ss_dssp EEEEEEEETTE-EEEECCEEECTTSCEEESEEESSHHHHHHHH------------------HHHHHHHHHHH
T ss_pred eeEEEEECCCc-eEEECCCcCCCCCCEEEEEEECCHHHHHHHH------------------HHHHHHHHHHH
Confidence 48999999999 99998876 3456687888999999999995 56777887764
No 49
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=82.79 E-value=2.9 Score=36.81 Aligned_cols=74 Identities=8% Similarity=0.074 Sum_probs=49.2
Q ss_pred cccccCCCEEEEEEEEEecceEEEEeCCCceeeEecccccCCCCcccccch------hhhhhhhcccCCCCEEEEEEEEe
Q psy10116 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSV------QDEEMMREFLKEGDLISAEIHQI 154 (298)
Q Consensus 81 rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~------~d~~~mr~~~~~GDlV~A~V~sv 154 (298)
-+.|.+|+++.|+|+.+..+...+-+-..+++.++...+ |..-+-...+ .+.. .+--++|+.|+-+|.++
T Consensus 124 VFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~i--p~~~~f~~~~~~~~~~~wv~--~~~~~ig~~IRFrV~~~ 199 (214)
T 2rf4_A 124 VWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNI--PVDWTFVHNDGNRSLGHWVD--SNGEPIDGKLRFTVRNV 199 (214)
T ss_dssp EECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTS--CSSCBCCCCSCC-CCCCCBC--SSCCBCCSEEEEEEEEE
T ss_pred EEecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHC--CCcccccccccccCCCceEc--CCCCCCCCEEEEEEEEE
Confidence 578999999999999999998888665688888886664 3221110000 0000 01112599999999998
Q ss_pred CCCC
Q psy10116 155 STEG 158 (298)
Q Consensus 155 ~~dg 158 (298)
..++
T Consensus 200 ~~~~ 203 (214)
T 2rf4_A 200 HTTG 203 (214)
T ss_dssp ECCS
T ss_pred EecC
Confidence 7544
No 50
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=80.88 E-value=2.9 Score=32.01 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=41.3
Q ss_pred ccCCCeEecCCccCCC--CCeeccCCeEe-cCCeEEEEEeeEEEEe-----CcEEEEEec
Q psy10116 27 EFTDPILTPGETVEYL--EGYMTGHGTFP-DDEEIKASVGGVVEKV-----NQLVSVRAM 78 (298)
Q Consensus 27 ~~~~~iV~PGD~I~~~--~~~~~G~Gty~-~~g~i~Asv~G~v~~~-----nk~v~V~p~ 78 (298)
.+..+.|.||..|.-. ..|-||.++-. .|..|+|.+.|.|+.. .+.|+|.|.
T Consensus 25 ~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~VsV~p~ 84 (85)
T 3v2d_0 25 RYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVHVRPL 84 (85)
T ss_dssp SCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEECGGGCEEEEEEEC
T ss_pred ecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEcCCCCEEEEEEEC
Confidence 4567899999999764 35889998876 4899999999999964 246888774
No 51
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=80.27 E-value=2.3 Score=33.77 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=42.3
Q ss_pred ccEEEEEeeCceEEEecCCC-CCCCccccccccCCHHHHHHHHHHHHHHHHHhhCCcccCHHHHHHHHHHHh
Q psy10116 197 CGAQVILGCNGYVWVSAIDE-NKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESL 267 (298)
Q Consensus 197 ~~~eiivG~NG~IWI~~~~~-~~~~~~~~~~~~i~~~~r~~i~rv~n~i~~l~~~~~~i~~~~i~~~~~~s~ 267 (298)
-++.|+=|.|| +||.-++. ..++.|.+...|++.+.|+.|. +.|+.+|+..+
T Consensus 35 ~dIKViEg~~G-lFVaMPSrk~~~GeyrDI~hPIt~e~Re~i~------------------~aVl~aY~~~~ 87 (105)
T 2i9z_A 35 HDLRVIEGNSG-LFVAMPSKRTPDGEFRDIAHPINSDMRQEIQ------------------DAVMKVYDETD 87 (105)
T ss_dssp EEEEEEEETTE-EEEECCEEECTTSCEEECEEESSHHHHHHHH------------------HHHHHHHHTST
T ss_pred eeEEEEECCCc-eEEECCCcCCCCCCEEEEEEECCHHHHHHHH------------------HHHHHHHHHHH
Confidence 47999999999 99998875 3456787888999999999995 56777887764
No 52
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=78.44 E-value=2.3 Score=32.96 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=40.8
Q ss_pred ccCCCeEecCCccCCC--CCeeccCCeEe-cCCeEEEEEeeEEEEe-----CcEEEEEec
Q psy10116 27 EFTDPILTPGETVEYL--EGYMTGHGTFP-DDEEIKASVGGVVEKV-----NQLVSVRAM 78 (298)
Q Consensus 27 ~~~~~iV~PGD~I~~~--~~~~~G~Gty~-~~g~i~Asv~G~v~~~-----nk~v~V~p~ 78 (298)
.+..+.|.||..|.-. ..|-||.++-. .|..|+|.+.|.|+.. .+.|+|.|.
T Consensus 25 ~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~V~V~p~ 84 (91)
T 2zjr_T 25 KFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKGKGARFISIEAA 84 (91)
T ss_dssp SCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEETTTEEEEEECCC
T ss_pred ecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcCCCcEEEEEEeC
Confidence 4567899999999864 35778988766 4889999999999964 236788774
No 53
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=75.97 E-value=3.5 Score=30.91 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=39.9
Q ss_pred ccCCCeEecCCccCCC--CCeeccCCeEe-cCCeEEEEEeeEEEEe-----C-cEEEEEe
Q psy10116 27 EFTDPILTPGETVEYL--EGYMTGHGTFP-DDEEIKASVGGVVEKV-----N-QLVSVRA 77 (298)
Q Consensus 27 ~~~~~iV~PGD~I~~~--~~~~~G~Gty~-~~g~i~Asv~G~v~~~-----n-k~v~V~p 77 (298)
.+..+.|.||..|.-. ..|-||.++-. .|..|+|.+.|.|+.. + +.|+|.|
T Consensus 16 ~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p 75 (76)
T 3r8s_W 16 RFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEA 75 (76)
T ss_dssp SCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEEC
T ss_pred ecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEe
Confidence 4567899999999764 35789988866 4899999999999964 1 3577766
No 54
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=64.87 E-value=22 Score=27.29 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=38.1
Q ss_pred cCCCEEEEEEEEE---ecceEEEEe-CCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEEeC
Q psy10116 85 EIGEVVVGRVTGL---QSQKWVVDT-NSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIS 155 (298)
Q Consensus 85 ~vGDiVIG~V~~V---~~~~~~VDI-~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~sv~ 155 (298)
+.++.+.|+|... ++.+ ++.- ....+.++|+|++.-.+- ....+++|+.|..+|..+.
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~------------~~~~l~~Ge~V~g~V~~i~ 73 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA------------VRGNPQQGDRVEGKIKSIT 73 (101)
T ss_dssp ----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC------------CCCCCCTTCEEEEEEEECC
T ss_pred cccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc------------cccCCCCCCEEEEEEEEeC
Confidence 3567788999976 4445 4443 345789999999841100 0146899999999999875
No 55
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=52.32 E-value=12 Score=27.50 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=32.8
Q ss_pred ccCCCeEecCCccCCC--CCeeccCCeEe-cCCeEEEEEeeEEE
Q psy10116 27 EFTDPILTPGETVEYL--EGYMTGHGTFP-DDEEIKASVGGVVE 67 (298)
Q Consensus 27 ~~~~~iV~PGD~I~~~--~~~~~G~Gty~-~~g~i~Asv~G~v~ 67 (298)
....+.|.||..|.-. ..|-||.++-. .|..|+|.+.|.|+
T Consensus 25 ~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~ 68 (69)
T 2ftc_O 25 KMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVR 68 (69)
T ss_pred ecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEe
Confidence 4567899999999864 34778888766 48899999999986
No 56
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=43.56 E-value=22 Score=27.05 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=29.5
Q ss_pred EEEeCchh----hccccCcceec--cccEEEEEeeCc-------eEEEecC
Q psy10116 177 LLTVPPSL----IRRSKSHFCNL--ACGAQVILGCNG-------YVWVSAI 214 (298)
Q Consensus 177 lv~v~~~l----i~r~~~~~~~l--~~~~eiivG~NG-------~IWI~~~ 214 (298)
.+.|++.. |++.+..+..| ++|+.|-+..+| .|||.+.
T Consensus 20 ~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~ 70 (97)
T 2ctl_A 20 SVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY 70 (97)
T ss_dssp EEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC
T ss_pred EEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC
Confidence 67888874 55555666666 489999999999 8999986
No 57
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=42.80 E-value=37 Score=23.15 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=28.3
Q ss_pred ccCHHHHHHHHHHHhCCCCcccCChhHHHHHHHHHHHH
Q psy10116 253 MLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQK 290 (298)
Q Consensus 253 ~i~~~~i~~~~~~s~~~~~~~~l~~~~~~~~~~~~~~~ 290 (298)
.++++.+..+|..+.++. |+++|+..+.++.+.|
T Consensus 5 ~LSDe~LiesY~~A~el~----L~~dFI~LL~~Ei~RR 38 (48)
T 3fyr_A 5 KLSDELLIESYFKATEMN----LNRDFIELIENEIKRR 38 (48)
T ss_dssp TSCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 368999999999997664 6799999988887765
No 58
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=42.55 E-value=27 Score=24.78 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=30.0
Q ss_pred EEEeCch----hhccccCcceec--cccEEEEEeeCc----eEEEecCC
Q psy10116 177 LLTVPPS----LIRRSKSHFCNL--ACGAQVILGCNG----YVWVSAID 215 (298)
Q Consensus 177 lv~v~~~----li~r~~~~~~~l--~~~~eiivG~NG----~IWI~~~~ 215 (298)
.+.|+|. +|++.+..+..| ++|+.|-+..+| .|||.+..
T Consensus 8 ~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~ 56 (71)
T 1vig_A 8 EINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDP 56 (71)
T ss_dssp EEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESS
T ss_pred EEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCH
Confidence 5678887 455555666656 599999999999 99999873
No 59
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.37 E-value=85 Score=24.76 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=37.4
Q ss_pred ccccCCCEEEEEEEEE-ecceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEE
Q psy10116 82 YIGEIGEVVVGRVTGL-QSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152 (298)
Q Consensus 82 Y~P~vGDiVIG~V~~V-~~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~ 152 (298)
..|+.|+ ++|+|++. .+..+.|.+.....-.-|+ ||- .|+ +=.+++||.|.++..
T Consensus 10 ~~p~ege-~~g~V~~~lgn~~f~V~l~nG~~~la~i-----~GK-~Rk---------~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 10 IVPSNQQ-QIVRVLRTPGNNLHEVETAQGQRFLVSM-----PSK-YRK---------NIWIKRGDFLIVDPI 65 (111)
T ss_dssp CCCCSSC-EEEEEEECCSSSEEEEECTTSCEEEEEC-----CTT-CCS---------CCCCCSSCEEEEEEC
T ss_pred cCCCCCe-EEEEEEEeCCCCEEEEEeCCCCEEEEEe-----chh-hcc---------cEEEcCCCEEEEEec
Confidence 4577765 77999997 5678888886655544443 331 122 456899999998864
No 60
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=40.90 E-value=25 Score=28.85 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=23.2
Q ss_pred ccCCCEE---------EEEEEEEecceEEEEeCC----CceeeEe
Q psy10116 84 GEIGEVV---------VGRVTGLQSQKWVVDTNS----ILESALH 115 (298)
Q Consensus 84 P~vGDiV---------IG~V~~V~~~~~~VDI~s----~~~a~L~ 115 (298)
.++||+| +|.|++..++.+.|.+-+ |.+|=||
T Consensus 8 ~~~g~~v~~~yKTG~YigeI~e~~~~~~lVkVlaVlKHP~QGDLH 52 (130)
T 1y71_A 8 FEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAVLKHPVQGDLH 52 (130)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCCC----
T ss_pred CCccceeEEEEecceeEEEEEeecCCeEEEEEEEEecCCCccCCC
Confidence 6788988 899999999999998752 4555555
No 61
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=35.97 E-value=75 Score=26.48 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=38.3
Q ss_pred eEecCCccCCCCCeeccCC-eEe--cCCeEEEEEeeEEEEeCcEEEEEecCcccccc----CCCEEEEEEEEEe
Q psy10116 32 ILTPGETVEYLEGYMTGHG-TFP--DDEEIKASVGGVVEKVNQLVSVRAMNSRYIGE----IGEVVVGRVTGLQ 98 (298)
Q Consensus 32 iV~PGD~I~~~~~~~~G~G-ty~--~~g~i~Asv~G~v~~~nk~v~V~p~~~rY~P~----vGDiVIG~V~~V~ 98 (298)
.+.+||.|.......+-+| .|. .+| ...+..+...++.+++.|....|-|- ..-.|+|+|+.+-
T Consensus 123 ~i~~GD~viv~~~~~~~~G~ivv~~~~~---~~~vKr~~~~~~~~~L~~~N~~y~~i~i~~~~~~i~G~Vv~~~ 193 (196)
T 3k2z_A 123 HICDGDLVLVRRQDWAQNGDIVAAMVDG---EVTLAKFYQRGDTVELRPANREMSSMFFRAEKVKILGKVVGVF 193 (196)
T ss_dssp TCCTTCEEEEEECSCCCTTCEEEEEETT---EEEEEEEEEETTEEEEECSCTTSCCEEEEGGGCEEEEEEEEEE
T ss_pred CCCCCCEEEEeccCcCCCCCEEEEEECC---cEEEEEEEEECCEEEEEECCCCCCCEEecCCCEEEEEEEEEEE
Confidence 5677887755322122222 121 233 23445566678889999998877653 2447889998764
No 62
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=34.99 E-value=1.2e+02 Score=23.88 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=34.0
Q ss_pred ccccCCCEEEEEEEEEec-ceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEE
Q psy10116 82 YIGEIGEVVVGRVTGLQS-QKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152 (298)
Q Consensus 82 Y~P~vGDiVIG~V~~V~~-~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~ 152 (298)
..|+.|+. +|+|++..+ ..|.|.......-.-++ || ..| . +-.+.+||.|..+..
T Consensus 27 ~~~~~~e~-~G~Vi~~lgn~~y~V~~~dG~~~l~~i-----~G-K~R--------k-~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 27 VFKEEGQE-YGQVQRMLGNGRLDAYCFDGQKRLCHI-----RG-KMR--------K-KVWVNPGDIVLVSLR 82 (117)
T ss_dssp CCCCTTEE-EEEEEEEEETTEEEEEETTSCEEEEEC-----CH-HHH--------H-HSCCCTTCEEEEEEC
T ss_pred cCCCCCEE-EEEEEEEcCCCEEEEEeCCCCEEEEEE-----cC-cee--------c-CCcCCCCCEEEEEEE
Confidence 36777776 799999988 88888774432111121 22 111 1 344569999987754
No 63
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.60 E-value=53 Score=24.77 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=29.6
Q ss_pred EEEeCch----hhccccCcceec--cccEEEEEeeCc-----eEEEecCC
Q psy10116 177 LLTVPPS----LIRRSKSHFCNL--ACGAQVILGCNG-----YVWVSAID 215 (298)
Q Consensus 177 lv~v~~~----li~r~~~~~~~l--~~~~eiivG~NG-----~IWI~~~~ 215 (298)
-+.|++. +|++....+..| ++++.|-+..+| .|||.+..
T Consensus 20 ~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~ 69 (95)
T 2ctm_A 20 DVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLP 69 (95)
T ss_dssp EEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCH
T ss_pred EEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCH
Confidence 5678877 455556666666 589999999999 89998863
No 64
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=29.58 E-value=51 Score=24.03 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=28.1
Q ss_pred EEEeCch----hhccccCcceec--cccEEEEEeeCce--------EEEec
Q psy10116 177 LLTVPPS----LIRRSKSHFCNL--ACGAQVILGCNGY--------VWVSA 213 (298)
Q Consensus 177 lv~v~~~----li~r~~~~~~~l--~~~~eiivG~NG~--------IWI~~ 213 (298)
.+.||+. +|+|.+..+..| .+|+.|.+..+|. |||.+
T Consensus 17 ~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G 67 (85)
T 2opv_A 17 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG 67 (85)
T ss_dssp EEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE
T ss_pred EEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe
Confidence 5677777 455556666666 4899999999998 89887
No 65
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=29.13 E-value=29 Score=27.69 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=14.7
Q ss_pred CEEEEEEEEEec-----c--eEEEEeCC
Q psy10116 88 EVVVGRVTGLQS-----Q--KWVVDTNS 108 (298)
Q Consensus 88 DiVIG~V~~V~~-----~--~~~VDI~s 108 (298)
|+++|+|+++.. + ..+||+|.
T Consensus 13 dirVG~I~~~e~hp~AdKL~~~~VD~G~ 40 (118)
T 3ers_X 13 EMRVGKIVEVKRHENADKLYIVQVDVGQ 40 (118)
T ss_dssp CEEEEEEEEEECCTTCSSCEEEEEECSS
T ss_pred eEEEEEEEEEEEcCCCCCcEEEEEEcCC
Confidence 899999999842 2 34456665
No 66
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=27.95 E-value=58 Score=26.92 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=30.8
Q ss_pred cEEEEEecCc----cccccCCCEEE-----EEEEEEecceEEEEeCCCcee
Q psy10116 71 QLVSVRAMNS----RYIGEIGEVVV-----GRVTGLQSQKWVVDTNSILES 112 (298)
Q Consensus 71 k~v~V~p~~~----rY~P~vGDiVI-----G~V~~V~~~~~~VDI~s~~~a 112 (298)
.++...|... .-.|++|+.+. |+|+++.++...||-|-|.-|
T Consensus 86 ~~V~~v~~~~f~~~~~~~~~G~~~~~~~~~~~V~~v~~~~V~vD~NHPLAG 136 (157)
T 3pr9_A 86 SKIKLIPLSEFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAG 136 (157)
T ss_dssp GGEEEEEHHHHHHTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTT
T ss_pred HhEEEcCHHHCCcccCCcCCCcEEEecCCCeEEEEEcCCEEEEECCCccCC
Confidence 4455555443 13477788775 899999999999999988655
No 67
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=27.61 E-value=1.8e+02 Score=21.48 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=31.9
Q ss_pred EEEEEEEEe-cceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEEE
Q psy10116 90 VVGRVTGLQ-SQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQ 153 (298)
Q Consensus 90 VIG~V~~V~-~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~s 153 (298)
+.|+|++.. +..+.|.......-.-+++. ..|++ +-.+.+||.|..+...
T Consensus 16 ~~G~Vik~l~n~~f~V~l~nG~~~~c~i~G------K~Rk~--------~I~Il~GD~V~ve~~~ 66 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELENGHKVLAHISG------KMRQH--------YIRILPEDRVVVELSP 66 (79)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEECH------HHHHT--------TCCCCTTCEEEEEEET
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEeCc------ceecC--------CccCCCCCEEEEEECc
Confidence 679999998 88899988654322222221 11221 2348899999888754
No 68
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=25.66 E-value=1.6e+02 Score=22.17 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=36.6
Q ss_pred CeEecCCccCCCCCeeccCC-eEe--cCC-eEEEEEeeEEEEeCcEEEEEecCcccccc---CCCEEEEEEEEEe
Q psy10116 31 PILTPGETVEYLEGYMTGHG-TFP--DDE-EIKASVGGVVEKVNQLVSVRAMNSRYIGE---IGEVVVGRVTGLQ 98 (298)
Q Consensus 31 ~iV~PGD~I~~~~~~~~G~G-ty~--~~g-~i~Asv~G~v~~~nk~v~V~p~~~rY~P~---vGDiVIG~V~~V~ 98 (298)
....+||.|.......+-+| .|. .++ ..+ +-.+...++.++..|....|-|. ....|+|+|+.+.
T Consensus 31 p~i~~Gd~v~Vd~~~~~~~Gdivv~~~~~~~~~---vKrl~~~~~~~~L~s~N~~y~~~~~~~~~~IiG~Vv~~~ 102 (109)
T 1kca_A 31 PSFPDGMLILVDPEQAVEPGDFCIARLGGDEFT---FKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQ 102 (109)
T ss_dssp SCCCTTCEEEEETTSCCCTTCEEEEECSTTCEE---EEEEEEETTEEEEECSSTTSCCEECCTTCEEEEEEEEEE
T ss_pred CeeCCCCEEEEecCCcCCCCCEEEEEECCCeEE---EEEEEEeCCEEEEEECCCCCCCEEcCCCcEEEEEEEEEE
Confidence 56778888765432212222 111 122 211 22233456778899998877664 3577999999753
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=25.15 E-value=26 Score=35.64 Aligned_cols=41 Identities=17% Similarity=0.074 Sum_probs=31.4
Q ss_pred eEEEeCch----hhccccCcceec--cccEEEEEeeCceEEEecCCC
Q psy10116 176 ILLTVPPS----LIRRSKSHFCNL--ACGAQVILGCNGYVWVSAIDE 216 (298)
Q Consensus 176 ~lv~v~~~----li~r~~~~~~~l--~~~~eiivG~NG~IWI~~~~~ 216 (298)
..++|+|. +|++.+..+..| ++|++|-+..||.|||.+.+.
T Consensus 569 ~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G~V~I~~~~~ 615 (630)
T 3u1k_A 569 ETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTP 615 (630)
T ss_dssp EEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSSEEEEEESSH
T ss_pred EEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCCcEEEEEeCCH
Confidence 35788888 455555566556 599999999999999999764
No 70
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=24.07 E-value=39 Score=27.26 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=32.4
Q ss_pred cEEEEEecC-ccccccCCCEEEEEEEEEecceEEEEeCCCceeeEeccccc
Q psy10116 71 QLVSVRAMN-SRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVN 120 (298)
Q Consensus 71 k~v~V~p~~-~rY~P~vGDiVIG~V~~V~~~~~~VDI~s~~~a~L~~s~v~ 120 (298)
.-|+|-|-. ++|-.+.||.|.|.|..-.. +..+.|.+.+..+|
T Consensus 77 ~DiyVs~~~irrf~lr~GD~V~g~vr~~~~-------~ek~~~l~~v~~vn 120 (130)
T 1a62_A 77 DDIYVSPSQIRRFNLRTGDTISGKIRPPKE-------GERYFALLKVNEVN 120 (130)
T ss_dssp TCEEECHHHHHHTTCCTTCEEEEEEECCCT-------TCCSEEEEEEEEET
T ss_pred CCEEECHHHHhHhCCCCCCEEEEEEeCCCC-------CCcccceeEEEeEC
Confidence 456776665 47888999999999986543 34677888888886
No 71
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=23.62 E-value=67 Score=26.12 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=25.2
Q ss_pred cccCCCEE-----EEEEEEEecceEEEEeCCCcee
Q psy10116 83 IGEIGEVV-----VGRVTGLQSQKWVVDTNSILES 112 (298)
Q Consensus 83 ~P~vGDiV-----IG~V~~V~~~~~~VDI~s~~~a 112 (298)
.|++|+.| .|+|+++.++...||-|.|.-|
T Consensus 103 ~~~~G~~~~~~~~~~~V~~v~~~~v~vD~NHPLAG 137 (151)
T 1ix5_A 103 EPEEGMVILAEGIPATITEVTDNEVTLDFNHELAG 137 (151)
T ss_dssp CCCTTEEEESSSCEEEEEEEETTEEEEECCCSSTT
T ss_pred cccccCEEEECCeEEEEEEEcCCEEEEeCCCCCCC
Confidence 47777665 5899999999999999988755
No 72
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=23.03 E-value=1.3e+02 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=14.4
Q ss_pred EEEEEEEecceEEEEeCC
Q psy10116 91 VGRVTGLQSQKWVVDTNS 108 (298)
Q Consensus 91 IG~V~~V~~~~~~VDI~s 108 (298)
=|+|+++.+..+.||.+.
T Consensus 6 P~kVvei~~~~A~vd~~G 23 (75)
T 2z1c_A 6 PGKVIEVNGPVAVVDFGG 23 (75)
T ss_dssp CEEEEEEETTEEEEEETT
T ss_pred cEEEEEECCCEEEEEcCC
Confidence 378999977788898863
No 73
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.67 E-value=70 Score=24.47 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=30.1
Q ss_pred eEEEeCchh----hccccCcceec--cccEEEEEeeCc----eEEEecCC
Q psy10116 176 ILLTVPPSL----IRRSKSHFCNL--ACGAQVILGCNG----YVWVSAID 215 (298)
Q Consensus 176 ~lv~v~~~l----i~r~~~~~~~l--~~~~eiivG~NG----~IWI~~~~ 215 (298)
..+.|++.. |++.+..+..| ++|+.|-+..+| .|||.+..
T Consensus 19 ~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~ 68 (104)
T 2ctk_A 19 IEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLA 68 (104)
T ss_dssp EEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECH
T ss_pred EEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCH
Confidence 367888884 55555566555 599999999998 99999864
No 74
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=21.55 E-value=84 Score=27.76 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=30.6
Q ss_pred cEEEEEecCc----cccccCCCEEE-----EEEEEEecceEEEEeCCCcee
Q psy10116 71 QLVSVRAMNS----RYIGEIGEVVV-----GRVTGLQSQKWVVDTNSILES 112 (298)
Q Consensus 71 k~v~V~p~~~----rY~P~vGDiVI-----G~V~~V~~~~~~VDI~s~~~a 112 (298)
.++...|... .-.|++|+.+. |+|+++.++...||-|.|.-|
T Consensus 86 ~lv~~vp~~~f~~~~~~~~vG~~~~~~~~~g~V~~v~~~~V~vD~NHPLAG 136 (231)
T 3prb_A 86 SKIKLIPLSEFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAG 136 (231)
T ss_dssp GGEEEEETHHHHTTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTT
T ss_pred HHEEecCHHHCCcccCCCCCCcEEEecCCCEEEEEEcCCEEEEeCCCccCC
Confidence 3455555442 13377788775 899999999999999988654
No 75
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=21.36 E-value=1.2e+02 Score=21.79 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=9.9
Q ss_pred hhcccCCCCEEEEE
Q psy10116 137 MREFLKEGDLISAE 150 (298)
Q Consensus 137 mr~~~~~GDlV~A~ 150 (298)
|.+.|++||.+.|+
T Consensus 3 ~~~~~~vGd~vmAr 16 (67)
T 3p8d_A 3 MSSEFQINEQVLAC 16 (67)
T ss_dssp --CCCCTTCEEEEE
T ss_pred cCcccccCCEEEEE
Confidence 56788999998865
No 76
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=21.20 E-value=30 Score=28.39 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=16.6
Q ss_pred hhhhhcccCCCCEEEEEEEE
Q psy10116 134 EEMMREFLKEGDLISAEIHQ 153 (298)
Q Consensus 134 ~~~mr~~~~~GDlV~A~V~s 153 (298)
-..|...|++||||-|++..
T Consensus 16 ~~~~~~~f~~GdlVwaK~~g 35 (153)
T 4fu6_A 16 FQGMTRDFKPGDLIFAKMKG 35 (153)
T ss_dssp TTCSGGGCCTTCEEEECCTT
T ss_pred HhhcccCCCCCCEEEEeCCC
Confidence 35677889999999999854
No 77
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=21.19 E-value=2.8e+02 Score=24.07 Aligned_cols=30 Identities=7% Similarity=0.143 Sum_probs=22.5
Q ss_pred cccCCCEEEEEEEEEecc-eEEEEeCCCcee
Q psy10116 83 IGEIGEVVVGRVTGLQSQ-KWVVDTNSILES 112 (298)
Q Consensus 83 ~P~vGDiVIG~V~~V~~~-~~~VDI~s~~~a 112 (298)
..++||+|.++|+++..+ .+.+.+..+..|
T Consensus 114 ~l~~GD~V~a~Vi~v~~~~~i~LS~k~~~lG 144 (235)
T 2z0s_A 114 LLKVGDYIKAKVVAFDKTRSPLLTVQGEGLG 144 (235)
T ss_dssp SSCTTCEEEEEEEEECTTSCEEEECCSSSCE
T ss_pred cCCCCCEEEEEEEEECCCCcEEEEEecccCc
Confidence 468999999999999865 466666555444
No 78
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=21.05 E-value=96 Score=20.65 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=12.4
Q ss_pred cccCCCCEEEEEEEE
Q psy10116 139 EFLKEGDLISAEIHQ 153 (298)
Q Consensus 139 ~~~~~GDlV~A~V~s 153 (298)
-.+++||-|+|.+..
T Consensus 46 l~L~~G~~V~~~ika 60 (67)
T 1fr3_A 46 LDLVPGDKVTALVKA 60 (67)
T ss_dssp HTCCTTCEEEEEECG
T ss_pred CCCCCCCEEEEEEec
Confidence 459999999999854
No 79
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.70 E-value=2.8e+02 Score=22.76 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=36.7
Q ss_pred cccCCCEEEEEEEEEe-cceEEEEeCCCceeeEecccccCCCCcccccchhhhhhhhcccCCCCEEEEEEE
Q psy10116 83 IGEIGEVVVGRVTGLQ-SQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152 (298)
Q Consensus 83 ~P~vGDiVIG~V~~V~-~~~~~VDI~s~~~a~L~~s~v~~pgg~~Rr~~~~d~~~mr~~~~~GDlV~A~V~ 152 (298)
.|..| -++|+|++.. +..+.|.+.....-+-|++ | ..|+ +=.+++||.|.++..
T Consensus 27 ~p~eg-e~~g~V~e~lgn~~f~V~l~nG~~~La~I~-----G-KmRk---------~IwI~~GD~VlVe~~ 81 (143)
T 1d7q_A 27 FKEDG-QEYAQVIKMLGNGRLEAMCFDGVKRLCHIR-----G-KLRK---------KVWINTSDIILVGLR 81 (143)
T ss_dssp CCCTT-EEEEEEEEECSSSEEEEEETTTEEEEEECC-----S-GGGG---------SCCCCTTCEEEEECS
T ss_pred CCCCC-EEEEEEEEEcCCCEEEEEeCCCCEEEEEec-----c-ccee---------eEEecCCCEEEEeec
Confidence 56655 5789999984 6678888876655454543 2 1122 566899999998864
No 80
>3gnf_B MVP, major vault protein; beta sheets, phosphoprotein, ribonucleoprotein, structural P; 2.10A {Mus musculus} PDB: 3gf5_A 3gng_A 1y7x_A
Probab=20.13 E-value=2.7e+02 Score=26.58 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=47.0
Q ss_pred Cee-ccCCeEecC--CeEEEEEeeEEEEeCcEE---------------------EEEecCccccccCCCEEEEEEEEEec
Q psy10116 44 GYM-TGHGTFPDD--EEIKASVGGVVEKVNQLV---------------------SVRAMNSRYIGEIGEVVVGRVTGLQS 99 (298)
Q Consensus 44 ~~~-~G~Gty~~~--g~i~Asv~G~v~~~nk~v---------------------~V~p~~~rY~P~vGDiVIG~V~~V~~ 99 (298)
+|+ .|+|+|.-. -.+...+.+.+-..|.-+ |..-..+.|+|.+-.-|++.|...
T Consensus 146 eWLv~gPg~Y~P~veeeV~~~v~A~vl~~n~AL~LrA~~~F~D~~G~~R~aGEEWLv~~~gaYiP~v~EeVv~~v~a~-- 223 (387)
T 3gnf_B 146 EWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECFDRDGKERVTGEEWLVRSVGAYLPAVFEEVLDLVDAV-- 223 (387)
T ss_dssp EEEEESSEEECCCTTEEEEEEEECEEECTTEEEEEEESSSEECTTCCEECTTCEEEECCCEEECCCTTEEEEEEEECE--
T ss_pred EEEEeCCEeecCCCcEEEecccccEEecCCceEEEEEEeeEECCCCCEeecCcEEEEecCceEcCCCceEEEEEEEeE--
Confidence 344 799999753 455555555554433333 434334579999999999977322
Q ss_pred ceEEEEeCCCceeeEe--cccccCCCCcccccchhh
Q psy10116 100 QKWVVDTNSILESALH--LTSVNLPGGEQRRRSVQD 133 (298)
Q Consensus 100 ~~~~VDI~s~~~a~L~--~s~v~~pgg~~Rr~~~~d 133 (298)
+-+...|++. +..|....|..|+..+.+
T Consensus 224 ------VL~e~eAL~LrA~~~F~D~~G~~Rk~GeeW 253 (387)
T 3gnf_B 224 ------ILTEKTALHLRARQNFKDLRGVAHRTGEEW 253 (387)
T ss_dssp ------ECCTTEEEEEEESSCEECTTSCEECTTCEE
T ss_pred ------EeCCCcEEEEEEeeeeEcCCCcCcCCCCee
Confidence 2334444432 223334456777765555
No 81
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=20.02 E-value=1.7e+02 Score=24.33 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=31.1
Q ss_pred CcEEEEEecCc---cccccCCCEE---------EEEEEEEecceEEEEeCCCcee
Q psy10116 70 NQLVSVRAMNS---RYIGEIGEVV---------VGRVTGLQSQKWVVDTNSILES 112 (298)
Q Consensus 70 nk~v~V~p~~~---rY~P~vGDiV---------IG~V~~V~~~~~~VDI~s~~~a 112 (298)
..++...|... ...|++|+.+ .|+|++|..+...||-|-|.-|
T Consensus 73 ~~~v~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAG 127 (171)
T 2k8i_A 73 ENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAG 127 (171)
T ss_dssp TTSEEEEEGGGGTTSSCCCTTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCC
T ss_pred hhhEEEeeHHHCCcccCccCCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCC
Confidence 34555556554 2357788765 4679999999999999988655
Done!