Your job contains 1 sequence.
>psy10116
MAEEKDKPVIEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKA
SVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVN
LPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV
PPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENKSGGFIQNMEVVKLSDRETITRL
NNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQTLGLAD
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10116
(298 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0034879 - symbol:Rrp4 "Rrp4" species:7227 "Drosoph... 730 3.2e-72 1
ZFIN|ZDB-GENE-050417-27 - symbol:exosc2 "exosome componen... 722 2.3e-71 1
UNIPROTKB|F1NGC4 - symbol:EXOSC2 "Uncharacterized protein... 713 2.1e-70 1
UNIPROTKB|Q2KID0 - symbol:EXOSC2 "Exosome complex compone... 700 4.9e-69 1
MGI|MGI:2385133 - symbol:Exosc2 "exosome component 2" spe... 695 1.7e-68 1
UNIPROTKB|Q13868 - symbol:EXOSC2 "Exosome complex compone... 694 2.1e-68 1
UNIPROTKB|J9NXW2 - symbol:EXOSC2 "Uncharacterized protein... 684 2.4e-67 1
UNIPROTKB|Q5ZHN8 - symbol:EXOSC2 "Uncharacterized protein... 682 4.0e-67 1
UNIPROTKB|F1S0X6 - symbol:EXOSC2 "Uncharacterized protein... 678 1.1e-66 1
UNIPROTKB|E2QU26 - symbol:EXOSC2 "Uncharacterized protein... 671 5.8e-66 1
UNIPROTKB|A3KFL2 - symbol:EXOSC2 "Exosome complex compone... 643 5.4e-63 1
UNIPROTKB|A3KFL4 - symbol:EXOSC2 "Exosome complex compone... 473 1.6e-57 2
RGD|1306573 - symbol:Exosc2 "exosome component 2" species... 467 8.8e-57 2
UNIPROTKB|F6UY88 - symbol:EXOSC2 "Uncharacterized protein... 568 4.8e-55 1
DICTYBASE|DDB_G0291310 - symbol:DDB_G0291310 "Exosome com... 449 3.3e-47 2
WB|WBGene00022232 - symbol:exos-2 species:6239 "Caenorhab... 490 8.8e-47 1
UNIPROTKB|J9NUF5 - symbol:EXOSC2 "Uncharacterized protein... 485 3.0e-46 1
POMBASE|SPAC2F7.14c - symbol:SPAC2F7.14c "exosome subunit... 468 1.9e-44 1
UNIPROTKB|J9PAR2 - symbol:EXOSC2 "Uncharacterized protein... 458 2.2e-43 1
CGD|CAL0003704 - symbol:orf19.1304 species:5476 "Candida ... 389 1.2e-39 2
UNIPROTKB|Q59TN2 - symbol:RRP4 "Likely exosome component ... 389 1.2e-39 2
SGD|S000001111 - symbol:RRP4 "Exosome non-catalytic core ... 398 4.9e-37 1
UNIPROTKB|A3KFL1 - symbol:EXOSC2 "Exosome complex compone... 376 1.1e-34 1
TAIR|locus:2014535 - symbol:RRP4 "AT1G03360" species:3702... 372 2.8e-34 1
UNIPROTKB|Q95Z16 - symbol:RRP4 "Rrp4p homologue" species:... 346 1.6e-31 1
GENEDB_PFALCIPARUM|PFD0515w - symbol:PFD0515w "exosome co... 340 6.9e-31 1
UNIPROTKB|Q9U0I4 - symbol:PFD0515w "Exosome complex exonu... 340 6.9e-31 1
ASPGD|ASPL0000038971 - symbol:AN10406 species:162425 "Eme... 298 9.9e-31 2
UNIPROTKB|A3KFL5 - symbol:EXOSC2 "Exosome complex compone... 327 1.6e-29 1
UNIPROTKB|B4DKK6 - symbol:EXOSC2 "Exosome complex compone... 324 3.4e-29 1
>FB|FBgn0034879 [details] [associations]
symbol:Rrp4 "Rrp4" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005652 "nuclear lamina" evidence=IDA] [GO:0010468 "regulation
of gene expression" evidence=IMP] InterPro:IPR026699 GO:GO:0005737
GO:GO:0003723 GO:GO:0010468 GO:GO:0005652 GO:GO:0000176
InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
PANTHER:PTHR21321 eggNOG:COG1097 EMBL:AY118465
ProteinModelPortal:Q8MSZ7 SMR:Q8MSZ7 STRING:Q8MSZ7 PaxDb:Q8MSZ7
PRIDE:Q8MSZ7 FlyBase:FBgn0034879 InParanoid:Q8MSZ7
OrthoDB:EOG4GB5P4 ArrayExpress:Q8MSZ7 Bgee:Q8MSZ7 Uniprot:Q8MSZ7
Length = 298
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 155/288 (53%), Positives = 199/288 (69%)
Query: 12 IMLASDRID--PLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKV 69
I LA DR+D L E + TPGE + G+M GHGTF +DE IK+SV GV++KV
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKV 66
Query: 70 NQLVSVRAMNSRYXXXXXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR 129
N+L+SVR + SRY RV+ +Q ++W VDTNS L+S L L+SVNLPGGE RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 130 SVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSK 189
S +DE+MMR +L EGDLISAE+ I EGSL+L+TRSLKYGKL QGIL+ V P+L++R K
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 190 SHFCNLACGAQVILGCNGYVWVSAI----DENKSGGFIQNM-EVVKLSDRETITRLNNVI 244
HF NL CGA VILG NGY+W+S +E GGF QN+ E V +DRE I RL N I
Sbjct: 187 MHFHNLPCGASVILGNNGYIWISPTKGQEEEGGEGGFAQNLNEHVPRADREVIARLRNSI 246
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKLQ 292
ALA+ K+M++DTSIQYAYEESL+Y ++LL+ + D+ T +L+
Sbjct: 247 LALAKCKLMIYDTSIQYAYEESLRYEAHELLQQNAIYDIGQQTQGRLR 294
>ZFIN|ZDB-GENE-050417-27 [details] [associations]
symbol:exosc2 "exosome component 2" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR026699
ZFIN:ZDB-GENE-050417-27 GO:GO:0003723 GO:GO:0000178
InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
CTD:23404 GeneTree:ENSGT00440000033656 KO:K03679 PANTHER:PTHR21321
EMBL:CU929062 IPI:IPI01024389 RefSeq:NP_001017572.2
UniGene:Dr.76338 DNASU:550234 Ensembl:ENSDART00000149195
GeneID:550234 KEGG:dre:550234 NextBio:20879497 ArrayExpress:F8W3K6
Bgee:F8W3K6 Uniprot:F8W3K6
Length = 295
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 139/263 (52%), Positives = 192/263 (73%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
++ PG+ + G+M GHGT+ D++ + ASV G VE+VN+L+ V+ + +RY
Sbjct: 28 LVVPGDVITSDTGFMRGHGTYMDEDRLTASVAGQVERVNKLICVKPLKTRYNGEVGDVVV 87
Query: 92 XRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
R+T +Q ++W V+TNS L+S L L++VNLPGGE RRRS QDE MR++L+EGDLISAE+
Sbjct: 88 GRITEVQQKRWKVETNSRLDSVLLLSAVNLPGGELRRRSTQDELAMRDYLQEGDLISAEV 147
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I ++G+L+LHTRSLKYGKLGQG+L+ V PSL++R K+HF NL CGA +ILG NGYVW+
Sbjct: 148 QSIFSDGALSLHTRSLKYGKLGQGVLVYVSPSLVKRQKTHFHNLPCGASLILGNNGYVWL 207
Query: 212 S---AIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
S A+ E ++GGF +ME V LSDRE ++RL N + ALA KV+LFDTS+ Y YE SL+
Sbjct: 208 SPTPALQEEQAGGFYTSMEPVSLSDREVVSRLRNCLLALANQKVLLFDTSVLYCYEASLQ 267
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE ++VL T Q+L
Sbjct: 268 HQIKDILKPEIMEEIVLETRQRL 290
>UNIPROTKB|F1NGC4 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA]
InterPro:IPR026699 GO:GO:0005634 GO:GO:0005737 GO:GO:0030307
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 CTD:23404
GeneTree:ENSGT00440000033656 KO:K03679 OMA:VMEEIVL
PANTHER:PTHR21321 EMBL:AADN02026560 EMBL:AADN02026561
EMBL:AADN02026562 IPI:IPI00819019 RefSeq:NP_001012816.2
UniGene:Gga.12684 Ensembl:ENSGALT00000039547 GeneID:417182
KEGG:gga:417182 NextBio:20820527 ArrayExpress:F1NGC4 Uniprot:F1NGC4
Length = 294
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 140/266 (52%), Positives = 189/266 (71%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
++ PG+T+ GYM GHGT+ D+E++ ASV G VE+VN+LV V + +RY
Sbjct: 27 LVVPGDTITTDTGYMRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNGEVGDIVV 86
Query: 92 XRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
R+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR++L+EGDLISAE+
Sbjct: 87 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEV 146
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 147 QSVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 206
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E K +GGF N+E V LSDRE I+RL N + AL K+MLFDTSI Y YE SL
Sbjct: 207 YPTPEQKDEEAGGFTTNLEPVPLSDREVISRLRNCVVALVTQKLMLFDTSILYCYEASLP 266
Query: 269 YSTYDLLKPESKLDLVLCTAQKLQTL 294
+ D+LKPE ++VL T QKL L
Sbjct: 267 HQIKDILKPEVMEEIVLETRQKLLDL 292
>UNIPROTKB|Q2KID0 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9913
"Bos taurus" [GO:0000178 "exosome (RNase complex)" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030307 "positive regulation of cell growth"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
PROSITE:PS50126 GO:GO:0005737 GO:GO:0030307 GO:GO:0005730
eggNOG:COG0515 GO:GO:0003723 OrthoDB:EOG40P460 HOGENOM:HOG000231988
GO:GO:0000178 GO:GO:0006364 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 EMBL:BC112683 IPI:IPI00710481
RefSeq:NP_001040026.1 UniGene:Bt.30629 ProteinModelPortal:Q2KID0
SMR:Q2KID0 STRING:Q2KID0 PRIDE:Q2KID0 Ensembl:ENSBTAT00000063775
GeneID:615712 KEGG:bta:615712 CTD:23404
GeneTree:ENSGT00440000033656 HOVERGEN:HBG051517 InParanoid:Q2KID0
KO:K03679 OMA:VMEEIVL NextBio:20899754 PANTHER:PTHR21321
Uniprot:Q2KID0
Length = 293
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 143/287 (49%), Positives = 200/287 (69%)
Query: 10 IEIMLASDRIDPLIEI--HEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVE 67
+E+ L R PL E E ++ PG+T+ G+M GHGT+ +E++ ASV G VE
Sbjct: 3 LEMRLPVAR-KPLSESLGRESKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVE 61
Query: 68 KVNQLVSVRAMNSRYXXXXXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQR 127
+VN+L+ V+A+ +RY R+T +Q ++W V+TNS L+S L L+S+NLPGGE R
Sbjct: 62 RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 121
Query: 128 RRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRR 187
RRS +DE MR FL+EGDLISAE+ + ++G+++LHTRSLKYGKLGQG+L+ V PSL++R
Sbjct: 122 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 181
Query: 188 SKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVI 244
K+HF +L CGA VILG NG++WV E+K +GGFI N+E V L+DRE I+RL N I
Sbjct: 182 QKTHFHDLPCGASVILGNNGFIWVYPTPEHKEDDAGGFIANLEPVSLTDREVISRLRNCI 241
Query: 245 KALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
+LA ++ML+DTSI Y YE SL + D+LKPE ++V+ T Q+L
Sbjct: 242 VSLATQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRL 288
>MGI|MGI:2385133 [details] [associations]
symbol:Exosc2 "exosome component 2" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0030307 "positive regulation of cell growth"
evidence=ISO] InterPro:IPR026699 PROSITE:PS50126 MGI:MGI:2385133
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 GO:GO:0006364 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 CTD:23404
GeneTree:ENSGT00440000033656 HOVERGEN:HBG051517 KO:K03679
OMA:VMEEIVL PANTHER:PTHR21321 eggNOG:COG1097 HOGENOM:HOG000193685
EMBL:BC021485 EMBL:BC021807 IPI:IPI00121437 RefSeq:NP_659135.1
UniGene:Mm.150972 ProteinModelPortal:Q8VBV3 SMR:Q8VBV3
STRING:Q8VBV3 PhosphoSite:Q8VBV3 PaxDb:Q8VBV3 PRIDE:Q8VBV3
DNASU:227715 Ensembl:ENSMUST00000038474 GeneID:227715
KEGG:mmu:227715 InParanoid:Q8VBV3 NextBio:378776 Bgee:Q8VBV3
CleanEx:MM_EXOSC2 Genevestigator:Q8VBV3
GermOnline:ENSMUSG00000039356 Uniprot:Q8VBV3
Length = 293
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 135/263 (51%), Positives = 189/263 (71%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 XRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
R+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGFI N+E V LSDRE I+RL N + L ++MLFDTSI Y YE SL
Sbjct: 206 YPTPEHKDEDAGGFIANLEPVALSDREVISRLRNCVVLLVTQRMMLFDTSILYCYEASLA 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ D+LKPE +++L T Q+L
Sbjct: 266 HQIKDILKPEVMEEIMLETRQRL 288
>UNIPROTKB|Q13868 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IDA] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=TAS] [GO:0008312 "7S RNA binding" evidence=TAS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR026699 PROSITE:PS50126 EMBL:BC000747 GO:GO:0005829
GO:GO:0005634 GO:GO:0030307 GO:GO:0005730 EMBL:CH471090 EMBL:U07561
EMBL:AL359092 GO:GO:0000178 GO:GO:0006364 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
InterPro:IPR025721 Pfam:PF14382 CTD:23404 HOVERGEN:HBG051517
KO:K03679 OMA:VMEEIVL PANTHER:PTHR21321 EMBL:AK001916 EMBL:AK022460
IPI:IPI00015905 RefSeq:NP_055100.2 UniGene:Hs.654643
ProteinModelPortal:Q13868 SMR:Q13868 IntAct:Q13868 STRING:Q13868
PhosphoSite:Q13868 DMDM:13878748 PaxDb:Q13868 PRIDE:Q13868
DNASU:23404 Ensembl:ENST00000372358 GeneID:23404 KEGG:hsa:23404
UCSC:uc004bzu.2 GeneCards:GC09P133569 H-InvDB:HIX0008473
HGNC:HGNC:17097 HPA:HPA021790 MIM:602238 neXtProt:NX_Q13868
PharmGKB:PA134876020 eggNOG:COG1097 HOGENOM:HOG000193685
InParanoid:Q13868 OrthoDB:EOG42RD7T PhylomeDB:Q13868 ChiTaRS:EXOSC2
EvolutionaryTrace:Q13868 GenomeRNAi:23404 NextBio:45573
ArrayExpress:Q13868 Bgee:Q13868 CleanEx:HS_EXOSC2
Genevestigator:Q13868 GermOnline:ENSG00000130713 GO:GO:0008312
Uniprot:Q13868
Length = 293
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 143/294 (48%), Positives = 202/294 (68%)
Query: 1 MAEEKDKPVIEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKA 60
MA E PV L S+R+ + H ++ PG+T+ G+M GHGT+ +E++ A
Sbjct: 1 MAMEMRLPVARKPL-SERLGRDTKKH-----LVVPGDTITTDTGFMRGHGTYMGEEKLIA 54
Query: 61 SVGGVVEKVNQLVSVRAMNSRYXXXXXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVN 120
SV G VE+VN+L+ V+A+ +RY R+T +Q ++W V+TNS L+S L L+S+N
Sbjct: 55 SVAGSVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMN 114
Query: 121 LPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV 180
LPGGE RRRS +DE MR FL+EGDLISAE+ + ++G+++LHTRSLKYGKLGQG+L+ V
Sbjct: 115 LPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQV 174
Query: 181 PPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETI 237
PSL++R K+HF +L CGA VILG NG++W+ E+K +GGFI N+E V L+DRE I
Sbjct: 175 SPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVI 234
Query: 238 TRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
+RL N I +L ++ML+DTSI Y YE SL + D+LKPE ++V+ T Q+L
Sbjct: 235 SRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRL 288
>UNIPROTKB|J9NXW2 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
GeneTree:ENSGT00440000033656 OMA:VMEEIVL PANTHER:PTHR21321
EMBL:AAEX03006839 EMBL:AAEX03006835 EMBL:AAEX03006837
EMBL:AAEX03006838 EMBL:AAEX03006836 Ensembl:ENSCAFT00000046120
Uniprot:J9NXW2
Length = 293
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 132/263 (50%), Positives = 189/263 (71%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 XRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
R+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLISAE+
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
+ ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWI 205
Query: 212 SAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
E+K +GGF ++E + L+DRE I+RL N I +L ++ML+DTSI Y YE SL
Sbjct: 206 YPTPEHKEEDTGGFTAHLEPISLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEASLP 265
Query: 269 YSTYDLLKPESKLDLVLCTAQKL 291
+ DLLKPE ++V+ T Q+L
Sbjct: 266 HQIKDLLKPEIMEEVVMETRQRL 288
>UNIPROTKB|Q5ZHN8 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA]
InterPro:IPR026699 GO:GO:0005634 GO:GO:0005737 GO:GO:0030307
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 CTD:23404
GeneTree:ENSGT00440000033656 HOVERGEN:HBG051517 KO:K03679
PANTHER:PTHR21321 eggNOG:COG1097 HOGENOM:HOG000193685
OrthoDB:EOG42RD7T EMBL:AADN02026560 EMBL:AADN02026561
EMBL:AADN02026562 RefSeq:NP_001012816.2 UniGene:Gga.12684
GeneID:417182 KEGG:gga:417182 NextBio:20820527 EMBL:AJ721096
IPI:IPI00603411 SMR:Q5ZHN8 STRING:Q5ZHN8 Ensembl:ENSGALT00000006184
InParanoid:Q5ZHN8 Uniprot:Q5ZHN8
Length = 254
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 135/252 (53%), Positives = 180/252 (71%)
Query: 46 MTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXXXRVTGLQSQKWVVD 105
M GHGT+ D+E++ ASV G VE+VN+LV V + +RY R+T +Q ++W V+
Sbjct: 1 MRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNGEVGDIVVGRITEVQQKRWKVE 60
Query: 106 TNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTR 165
TNS L+S L L+S+NLPGGE RRRS +DE MR++L+EGDLISAE+ + ++G+++LHTR
Sbjct: 61 TNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEVQSVFSDGAVSLHTR 120
Query: 166 SLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGF 222
SLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG++W+ E K +GGF
Sbjct: 121 SLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEQKDEEAGGF 180
Query: 223 IQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLD 282
N+E V LSDRE I+RL N + AL K+MLFDTSI Y YE SL + D+LKPE +
Sbjct: 181 TTNLEPVPLSDREVISRLRNCVVALVTQKLMLFDTSILYCYEASLPHQIKDILKPEVMEE 240
Query: 283 LVLCTAQKLQTL 294
+VL T QKL L
Sbjct: 241 IVLETRQKLLDL 252
>UNIPROTKB|F1S0X6 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030307 "positive regulation of cell growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR026699 GO:GO:0005634 GO:GO:0005737 GO:GO:0030307
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 GeneTree:ENSGT00440000033656
OMA:VMEEIVL PANTHER:PTHR21321 EMBL:CU914779
Ensembl:ENSSSCT00000006273 Uniprot:F1S0X6
Length = 299
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 135/269 (50%), Positives = 190/269 (70%)
Query: 32 ILTPGETVEYLEGYMT------GHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXX 85
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY
Sbjct: 26 LVVPGDTITTDTGFMRSSCCHRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGE 85
Query: 86 XXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
R+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGD
Sbjct: 86 VGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGD 145
Query: 146 LISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGC 205
LISAE+ + ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG
Sbjct: 146 LISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGN 205
Query: 206 NGYVWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYA 262
NG++W+ E+K +GGFI N+E V L+DRE I+RL N I +L +VML+DTSI Y
Sbjct: 206 NGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIVSLVTQRVMLYDTSILYC 265
Query: 263 YEESLKYSTYDLLKPESKLDLVLCTAQKL 291
YE SL + D+LKPE ++V+ T Q+L
Sbjct: 266 YEASLPHQIKDILKPEVMEEIVMETRQRL 294
>UNIPROTKB|E2QU26 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 PANTHER:PTHR21321
Ensembl:ENSCAFT00000031727 Uniprot:E2QU26
Length = 296
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 132/266 (49%), Positives = 189/266 (71%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 XRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS--- 148
R+T +Q ++W V+TNS L+S L L+S+NLPGGE RRRS +DE MR FL+EGDLIS
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISSGQ 145
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGY 208
AE+ + ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VILG NG+
Sbjct: 146 AEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGF 205
Query: 209 VWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
+W+ E+K +GGF ++E + L+DRE I+RL N I +L ++ML+DTSI Y YE
Sbjct: 206 IWIYPTPEHKEEDTGGFTAHLEPISLADREVISRLRNCIVSLVTQRMMLYDTSILYCYEA 265
Query: 266 SLKYSTYDLLKPESKLDLVLCTAQKL 291
SL + DLLKPE ++V+ T Q+L
Sbjct: 266 SLPHQIKDLLKPEIMEEVVMETRQRL 291
>UNIPROTKB|A3KFL2 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
GO:GO:0003723 EMBL:AL359092 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097
HOGENOM:HOG000193685 ChiTaRS:EXOSC2 IPI:IPI00646511 SMR:A3KFL2
Ensembl:ENST00000372352 Uniprot:A3KFL2
Length = 285
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 138/294 (46%), Positives = 195/294 (66%)
Query: 1 MAEEKDKPVIEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKA 60
MA E PV L S+R+ + H ++ PG+T+ G+M GHGT+ +E++ A
Sbjct: 1 MAMEMRLPVARKPL-SERLGRDTKKH-----LVVPGDTITTDTGFMRGHGTYMGEEKLIA 54
Query: 61 SVGGVVEKVNQLVSVRAMNSRYXXXXXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVN 120
SV G VE+VN+L+ V+A+ +RY R+T +Q ++W V+TNS L+S L L+S+N
Sbjct: 55 SVAGSVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMN 114
Query: 121 LPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV 180
LPGGE RRRS +DE MR FL+EGDLISAE+ + ++G+++LHTRSLKYGK V
Sbjct: 115 LPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGK--------V 166
Query: 181 PPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETI 237
PSL++R K+HF +L CGA VILG NG++W+ E+K +GGFI N+E V L+DRE I
Sbjct: 167 SPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVI 226
Query: 238 TRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
+RL N I +L ++ML+DTSI Y YE SL + D+LKPE ++V+ T Q+L
Sbjct: 227 SRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRL 280
>UNIPROTKB|A3KFL4 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
EMBL:CH471090 GO:GO:0003723 EMBL:AL359092 GO:GO:0000178
InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097
HOGENOM:HOG000193685 ChiTaRS:EXOSC2 IPI:IPI00647528 SMR:A3KFL4
Ensembl:ENST00000372351 Uniprot:A3KFL4
Length = 263
Score = 473 (171.6 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 92/169 (54%), Positives = 126/169 (74%)
Query: 126 QRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI 185
+RRRS +DE MR FL+EGDLISAE+ + ++G+++LHTRSLKYGKLGQG+L+ V PSL+
Sbjct: 90 ERRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLV 149
Query: 186 RRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNN 242
+R K+HF +L CGA VILG NG++W+ E+K +GGFI N+E V L+DRE I+RL N
Sbjct: 150 KRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRN 209
Query: 243 VIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
I +L ++ML+DTSI Y YE SL + D+LKPE ++V+ T Q+L
Sbjct: 210 CIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRL 258
Score = 136 (52.9 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 1 MAEEKDKPVIEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKA 60
MA E PV L S+R+ + H ++ PG+T+ G+M GHGT+ +E++ A
Sbjct: 1 MAMEMRLPVARKPL-SERLGRDTKKH-----LVVPGDTITTDTGFMRGHGTYMGEEKLIA 54
Query: 61 SVGGVVEKVNQLVSVRAMNSRYXXXXXXXXXXRVT 95
SV G VE+VN+L+ V+A+ +RY R+T
Sbjct: 55 SVAGSVERVNKLICVKALKTRYIGEVGDIVVGRIT 89
>RGD|1306573 [details] [associations]
symbol:Exosc2 "exosome component 2" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0030307
"positive regulation of cell growth" evidence=ISO] [GO:0004532
"exoribonuclease activity" evidence=ISO] InterPro:IPR026699
RGD:1306573 GO:GO:0003723 GO:GO:0000178 InterPro:IPR025721
Pfam:PF14382 PANTHER:PTHR21321 EMBL:AC105586 IPI:IPI00948709
Ensembl:ENSRNOT00000068297 UCSC:RGD:1306573 ArrayExpress:D3ZGV5
Uniprot:D3ZGV5
Length = 263
Score = 467 (169.5 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 92/169 (54%), Positives = 124/169 (73%)
Query: 126 QRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLI 185
+RRRS +DE MR FL+EGDLISAE+ + ++G+++LHTRSLKYGKLGQG L+ V P+L+
Sbjct: 90 ERRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGALVQVSPALV 149
Query: 186 RRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNN 242
+R K+HF +L CGA VILG NG++W+ E+K +GGFI N+E V LSDRE I+RL N
Sbjct: 150 KRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKDEEAGGFIANLEPVSLSDREVISRLRN 209
Query: 243 VIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
I L ++ML+DTSI Y YE SL + D+LKPE +++L T Q+L
Sbjct: 210 CIVLLVTQRMMLYDTSILYCYEASLAHQIKDILKPEVMEEIMLETRQRL 258
Score = 135 (52.6 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY
Sbjct: 26 LVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 92 XRVT 95
R+T
Sbjct: 86 GRIT 89
>UNIPROTKB|F6UY88 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178 InterPro:IPR025721
Pfam:PF14382 GeneTree:ENSGT00440000033656 PANTHER:PTHR21321
EMBL:AAEX03006839 Ensembl:ENSCAFT00000031727 EMBL:AAEX03006835
EMBL:AAEX03006837 EMBL:AAEX03006838 EMBL:AAEX03006836
Uniprot:F6UY88
Length = 302
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 120/272 (44%), Positives = 179/272 (65%)
Query: 32 ILTPGETVEYLEGYMT----GHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXX 87
++ PG+T+ G+M GHGT+ +E++ ASV G VE+VN+L+ V+A+ +RY
Sbjct: 26 LVVPGDTITTDTGFMRSQNRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVG 85
Query: 88 XXXXXRVTGLQS-QKWVVDTNSILESALHL-TSVNLPGGEQRRRSVQDEEMMREFLKEGD 145
R+T ++ W + + S L + + L +S+ + G RRS +DE MR FL+EGD
Sbjct: 86 DIVVGRITEVKLVSDWFLQSKSKLNAVVSLQSSMYVQRGSLWRRSAEDELAMRGFLQEGD 145
Query: 146 LIS---AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVI 202
LIS AE+ + ++G+++LHTRSLKYGKLGQG+L+ V PSL++R K+HF +L CGA VI
Sbjct: 146 LISSGQAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVI 205
Query: 203 LGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSI 259
LG NG++W+ E+K +GGF ++E + L+DRE I+RL N I +L ++ML+DTSI
Sbjct: 206 LGNNGFIWIYPTPEHKEEDTGGFTAHLEPISLADREVISRLRNCIVSLVTQRMMLYDTSI 265
Query: 260 QYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
Y YE SL + DLLKPE ++V+ T Q+L
Sbjct: 266 LYCYEASLPHQIKDLLKPEIMEEVVMETRQRL 297
>DICTYBASE|DDB_G0291310 [details] [associations]
symbol:DDB_G0291310 "Exosome complex exonuclease
RRP4" species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR026699 dictyBase:DDB_G0291310
EMBL:AAFI02000177 GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 KO:K03679 PANTHER:PTHR21321 eggNOG:COG1097
RefSeq:XP_635135.1 ProteinModelPortal:Q54EV5 STRING:Q54EV5
EnsemblProtists:DDB0183814 GeneID:8628081 KEGG:ddi:DDB_G0291310
InParanoid:Q54EV5 OMA:ISREGEY ProtClustDB:CLSZ2429544
Uniprot:Q54EV5
Length = 380
Score = 449 (163.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 93/206 (45%), Positives = 130/206 (63%)
Query: 24 EIHEFTDPILTPGETVEYLEGYMTGHGTFPDDE-EIKASVGGVVEKVNQLVSVRAMNSRY 82
E+ + ++T G+T+ Y+ GHGTF D + ASV G ++KV++LVSV+A+ SRY
Sbjct: 81 ELFQSKKLVIT-GQTISREGEYLKGHGTFNDGSGSLVASVCGTLDKVDRLVSVKALKSRY 139
Query: 83 XXXXXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLK 142
R+T + S++W VD NS L+ L L+++NLPGG QRRR+ DE MR F
Sbjct: 140 HGEVGDIIVGRITEITSKRWKVDVNSRLDYILMLSAINLPGGIQRRRTSADELQMRSFFV 199
Query: 143 EGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVI 202
E DL+ AE+ + +GS+ +HTR+ KYGKL G V PSLI+RSK HF NL CG VI
Sbjct: 200 ENDLVYAEVQMVMGDGSVAIHTRNQKYGKLQNGHFTKVIPSLIKRSKQHFYNLECGVDVI 259
Query: 203 LGCNGYVWVSAIDENKSGG-FIQNME 227
LG NGY+W++ ++ K+ FIQ E
Sbjct: 260 LGVNGYIWIADSEQQKNQQQFIQKHE 285
Score = 62 (26.9 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 229 VKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLKYS--TYDLLKPE 278
V R+ I R+ N I L + +++ SI Y+ SLK + DLL P+
Sbjct: 305 VSKESRDRIARVKNSISLLEKGFLLIHQKSIMNVYKLSLKMKLQSKDLLHPQ 356
>WB|WBGene00022232 [details] [associations]
symbol:exos-2 species:6239 "Caenorhabditis elegans"
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR026699
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0000178
EMBL:FO081731 InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721
Pfam:PF14382 GeneTree:ENSGT00440000033656 KO:K03679
PANTHER:PTHR21321 eggNOG:COG1097 HOGENOM:HOG000193685
RefSeq:NP_500978.1 ProteinModelPortal:Q95XD0 SMR:Q95XD0
STRING:Q95XD0 PaxDb:Q95XD0 EnsemblMetazoa:Y73B6BL.3 GeneID:177403
KEGG:cel:CELE_Y73B6BL.3 UCSC:Y73B6BL.3 CTD:177403
WormBase:Y73B6BL.3 InParanoid:Q95XD0 OMA:VARVANC NextBio:896664
Uniprot:Q95XD0
Length = 303
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 107/269 (39%), Positives = 161/269 (59%)
Query: 32 ILTPGETV-EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXX 90
I+ PG +V + + +M GHGT+ D EI +S+ GVV+++N+L+ V+ + RY
Sbjct: 31 IVIPGHSVCDAPQQFMRGHGTYVRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGDVV 90
Query: 91 XXRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAE 150
RV +Q+++W D S L + L L SV LPGG+ RR+ V+DEE M EFLK G+LI AE
Sbjct: 91 VARVVEVQAKRWKCDVASRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAE 150
Query: 151 IHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVW 210
+ Q+ +G+L LHTR+ KYGKL QGIL+ VPP LI++SK HF L G VI+GCNG VW
Sbjct: 151 VQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKHFHTLPYGMAVIIGCNGSVW 210
Query: 211 VS-AIDEN---KSGGFIQNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEES 266
V+ ++ E + G + ++V R T+ R+ ++ L + + ++ S+ YE S
Sbjct: 211 VTPSLPETTLEEDGSHVHEFQIVPPDVRVTMVRIAACVRLLRDYSISIYLNSLTTCYEMS 270
Query: 267 LKYSTYDLLKPESKLDLV-LCTAQKLQTL 294
Y +L + ++ L L A+ LQ L
Sbjct: 271 QPYEIKELAEQDTSSRLAYLIAARLLQEL 299
>UNIPROTKB|J9NUF5 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178
GeneTree:ENSGT00440000033656 PANTHER:PTHR21321 EMBL:AAEX03006839
EMBL:AAEX03006835 EMBL:AAEX03006837 EMBL:AAEX03006838
EMBL:AAEX03006836 Ensembl:ENSCAFT00000049035 Uniprot:J9NUF5
Length = 185
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 94/174 (54%), Positives = 129/174 (74%)
Query: 121 LPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV 180
+PGGE RRRS +DE MR FL+EGDLISAE+ + ++G+++LHTRSLKYGKLGQG+L+ V
Sbjct: 8 VPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQV 67
Query: 181 PPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETI 237
PSL++R K+HF +L CGA VILG NG++W+ E+K +GGF ++E + L+DRE I
Sbjct: 68 SPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEDTGGFTAHLEPISLADREVI 127
Query: 238 TRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
+RL N I +L ++ML+DTSI Y YE SL + DLLKPE ++V+ T Q+L
Sbjct: 128 SRLRNCIVSLVTQRMMLYDTSILYCYEASLPHQIKDLLKPEIMEEVVMETRQRL 181
>POMBASE|SPAC2F7.14c [details] [associations]
symbol:SPAC2F7.14c "exosome subunit Rrp4 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] [GO:0070478 "nuclear-transcribed
mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated
decay" evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA
catabolic process, non-stop decay" evidence=ISO] [GO:0070651
"nonfunctional rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR026699 PROSITE:PS50126 PomBase:SPAC2F7.14c
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0044732
GO:GO:0003723 GO:GO:0071035 GO:GO:0071038 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 KO:K03679 PANTHER:PTHR21321
eggNOG:COG1097 HOGENOM:HOG000193685 PIR:T38562 RefSeq:NP_592984.1
ProteinModelPortal:Q09704 STRING:Q09704 EnsemblFungi:SPAC2F7.14c.1
GeneID:2541813 KEGG:spo:SPAC2F7.14c OMA:GNKRWKV OrthoDB:EOG4G1QRD
NextBio:20802901 Uniprot:Q09704
Length = 329
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 113/274 (41%), Positives = 162/274 (59%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
++TPG+ V +M GHGT+ +D I ASV G V++VN+L+SV+ + S+Y
Sbjct: 57 LVTPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLII 116
Query: 92 XRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
++ +Q ++W VD + + L L+S+NLPGG QRR+ DE MR F +EGDL+ AE+
Sbjct: 117 GKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEV 176
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
Q ++GS+++HTRSLKYGKL G+ L VPP+L+ RSKSH LA G +IL NGYVWV
Sbjct: 177 QQYFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAGGVDIILSVNGYVWV 236
Query: 212 SAIDENK-SGGFIQNMEV-----VKLSDRETI---TRLN--NV---IKALAESKVMLFDT 257
S +EN+ S I +E + ++ + I TRLN V IK LA + L
Sbjct: 237 SKHNENQHSSVSITRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQA 296
Query: 258 SIQYAYEESLKYSTY-DLLKPESKLDLVLCTAQK 290
SI YE SL +S DL P++ +D + A +
Sbjct: 297 SITNFYESSLVFSNLQDLTVPKN-MDQIAMEAMQ 329
>UNIPROTKB|J9PAR2 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178
GeneTree:ENSGT00440000033656 PANTHER:PTHR21321 EMBL:AAEX03006839
EMBL:AAEX03006835 EMBL:AAEX03006837 EMBL:AAEX03006838
EMBL:AAEX03006836 Ensembl:ENSCAFT00000046636 Uniprot:J9PAR2
Length = 183
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 92/175 (52%), Positives = 126/175 (72%)
Query: 123 GGEQRRRSVQDEEMMREFLKEGDLIS---AEIHQISTEGSLTLHTRSLKYGKLGQGILLT 179
GG RRRS +DE MR FL+EGDLIS AE+ + ++G+++LHTRSLKYGKLGQG+L+
Sbjct: 4 GGAVRRRSAEDELAMRGFLQEGDLISSGQAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQ 63
Query: 180 VPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRET 236
V PSL++R K+HF +L CGA VILG NG++W+ E+K +GGF ++E + L+DRE
Sbjct: 64 VSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEDTGGFTAHLEPISLADREV 123
Query: 237 ITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
I+RL N I +L ++ML+DTSI Y YE SL + DLLKPE ++V+ T Q+L
Sbjct: 124 ISRLRNCIVSLVTQRMMLYDTSILYCYEASLPHQIKDLLKPEIMEEVVMETRQRL 178
>CGD|CAL0003704 [details] [associations]
symbol:orf19.1304 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005816 "spindle pole body" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] InterPro:IPR026699 CGD:CAL0003704
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 KO:K03679 PANTHER:PTHR21321
eggNOG:COG1097 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709945.1 RefSeq:XP_712984.1 ProteinModelPortal:Q59TN2
STRING:Q59TN2 GeneID:3645357 GeneID:3645390 KEGG:cal:CaO19.1304
KEGG:cal:CaO19.8884 Uniprot:Q59TN2
Length = 304
Score = 389 (142.0 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 80/189 (42%), Positives = 116/189 (61%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
I+TPGE + +M GHGT+ +++ +SV G + +VN+L+SV + RY
Sbjct: 53 IVTPGELITEDPTWMKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLRGRYSPETGDHVI 112
Query: 92 XRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
R+T + +++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL++ E+
Sbjct: 113 GRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNCEV 172
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I G +LHTRSLKYGKL GI L +P LI ++K+H +L ++LG NGY+W+
Sbjct: 173 QTIFNNGIASLHTRSLKYGKLRNGIFLKIPSPLIVKTKNHAFDLPGNVSIVLGTNGYIWL 232
Query: 212 SAIDE-NKS 219
+ NKS
Sbjct: 233 YKTPKINKS 241
Score = 50 (22.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 211 VSAIDENKSGGFIQNM-EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYE 264
++ ++E S + E + + R I + N+IK+LAE + + + + A++
Sbjct: 249 ITRLEEESSWEIYSDKNEFIDVQTRNNIAKYYNIIKSLAEKEQKINNDVLVEAFD 303
>UNIPROTKB|Q59TN2 [details] [associations]
symbol:RRP4 "Likely exosome component Rrp4p" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR026699 CGD:CAL0003704 GO:GO:0003723
GO:GO:0000178 InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721
Pfam:PF14382 KO:K03679 PANTHER:PTHR21321 eggNOG:COG1097
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709945.1
RefSeq:XP_712984.1 ProteinModelPortal:Q59TN2 STRING:Q59TN2
GeneID:3645357 GeneID:3645390 KEGG:cal:CaO19.1304
KEGG:cal:CaO19.8884 Uniprot:Q59TN2
Length = 304
Score = 389 (142.0 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 80/189 (42%), Positives = 116/189 (61%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
I+TPGE + +M GHGT+ +++ +SV G + +VN+L+SV + RY
Sbjct: 53 IVTPGELITEDPTWMKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLRGRYSPETGDHVI 112
Query: 92 XRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
R+T + +++W VD + ++ L L SVNLPGG RR+S DE MR FLKEGDL++ E+
Sbjct: 113 GRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNCEV 172
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGYVWV 211
I G +LHTRSLKYGKL GI L +P LI ++K+H +L ++LG NGY+W+
Sbjct: 173 QTIFNNGIASLHTRSLKYGKLRNGIFLKIPSPLIVKTKNHAFDLPGNVSIVLGTNGYIWL 232
Query: 212 SAIDE-NKS 219
+ NKS
Sbjct: 233 YKTPKINKS 241
Score = 50 (22.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 211 VSAIDENKSGGFIQNM-EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYE 264
++ ++E S + E + + R I + N+IK+LAE + + + + A++
Sbjct: 249 ITRLEEESSWEIYSDKNEFIDVQTRNNIAKYYNIIKSLAEKEQKINNDVLVEAFD 303
>SGD|S000001111 [details] [associations]
symbol:RRP4 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=IGI] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=IDA] [GO:0070651 "nonfunctional
rRNA decay" evidence=IC] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IC] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0034427 "nuclear-transcribed mRNA catabolic
process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR026699 PROSITE:PS50126 SGD:S000001111 GO:GO:0005730
EMBL:BK006934 GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967
SMART:SM00316 GO:GO:0071051 EMBL:U00061 InterPro:IPR025721
Pfam:PF14382 GeneTree:ENSGT00440000033656 KO:K03679
PANTHER:PTHR21321 eggNOG:COG1097 HOGENOM:HOG000193685 GO:GO:0034475
GO:GO:0071049 OMA:GNKRWKV OrthoDB:EOG4G1QRD PIR:S46714
RefSeq:NP_011936.1 ProteinModelPortal:P38792 SMR:P38792
DIP:DIP-5888N IntAct:P38792 MINT:MINT-649511 STRING:P38792
PaxDb:P38792 EnsemblFungi:YHR069C GeneID:856466 KEGG:sce:YHR069C
CYGD:YHR069c NextBio:982123 Genevestigator:P38792
GermOnline:YHR069C Uniprot:P38792
Length = 359
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 93/226 (41%), Positives = 124/226 (54%)
Query: 27 EFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXX 86
E I+TPGE V +M GHGT+ D +SV G V +VN+L+SV + RY
Sbjct: 49 ESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPET 108
Query: 87 XXXXXXRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDL 146
R+ + +++W VD + L L SVNLPGG RR+S DE MR FLKEGDL
Sbjct: 109 GDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDL 168
Query: 147 ISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCN 206
++AE+ + +GS +LHTRSLKYGKL G+ VP SLI R+K+H NL V+LG N
Sbjct: 169 LNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVN 228
Query: 207 GYVWV---SAIDENKSGGFIQNMEVVKLSDRETITRLNNVIKALAE 249
GY+W+ S +D + N +K + LN I L E
Sbjct: 229 GYIWLRKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEE 274
>UNIPROTKB|A3KFL1 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
GO:GO:0003723 EMBL:AL359092 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097
HOGENOM:HOG000193685 ChiTaRS:EXOSC2 IPI:IPI00644896 SMR:A3KFL1
Ensembl:ENST00000372350 Uniprot:A3KFL1
Length = 200
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 80/171 (46%), Positives = 115/171 (67%)
Query: 1 MAEEKDKPVIEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKA 60
MA E PV L S+R+ + H ++ PG+T+ G+M GHGT+ +E++ A
Sbjct: 1 MAMEMRLPVARKPL-SERLGRDTKKH-----LVVPGDTITTDTGFMRGHGTYMGEEKLIA 54
Query: 61 SVGGVVEKVNQLVSVRAMNSRYXXXXXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVN 120
SV G VE+VN+L+ V+A+ +RY R+T +Q ++W V+TNS L+S L L+S+N
Sbjct: 55 SVAGSVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMN 114
Query: 121 LPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGK 171
LPGGE RRRS +DE MR FL+EGDLISAE+ + ++G+++LHTRSLKYGK
Sbjct: 115 LPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGK 165
>TAIR|locus:2014535 [details] [associations]
symbol:RRP4 "AT1G03360" species:3702 "Arabidopsis
thaliana" [GO:0004527 "exonuclease activity" evidence=ISS]
[GO:0009561 "megagametogenesis" evidence=RCA] InterPro:IPR026699
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0000178
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AC005278 KO:K03679 PANTHER:PTHR21321 eggNOG:COG1097
HOGENOM:HOG000193685 OMA:VARVANC EMBL:BT010533 EMBL:AK176232
IPI:IPI00525990 PIR:C86165 RefSeq:NP_171835.1 UniGene:At.42547
ProteinModelPortal:Q9ZVT7 SMR:Q9ZVT7 IntAct:Q9ZVT7 STRING:Q9ZVT7
PaxDb:Q9ZVT7 PRIDE:Q9ZVT7 EnsemblPlants:AT1G03360.1 GeneID:839521
KEGG:ath:AT1G03360 TAIR:At1g03360 InParanoid:Q9ZVT7
PhylomeDB:Q9ZVT7 ProtClustDB:CLSN2679661 ArrayExpress:Q9ZVT7
Genevestigator:Q9ZVT7 Uniprot:Q9ZVT7
Length = 322
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 89/233 (38%), Positives = 129/233 (55%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXX 91
I+T V + + ++ GHGT D E+ A+V GVVE+V++LV VR + +RY
Sbjct: 39 IVTDSIPVNHDDAFLKGHGTSEVDGELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVV 98
Query: 92 XRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
RV + ++W V+ N + L L+S+N+P G QRRR+ DE MR E D++ AE+
Sbjct: 99 GRVIEVAQKRWRVELNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEV 158
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNL-ACGAQVILGCNGYVW 210
+GSL L RS KYGKL +G LL V P L++RSK HF + + G +I+GCNG++W
Sbjct: 159 RNFQHDGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIW 218
Query: 211 VS---------AIDENKSGGFIQNMEVVK------LSDRETITRLNNVIKALA 248
V AID+ K I + K L R+TI R+ N I+ L+
Sbjct: 219 VGEHVEVRDPMAIDDQKDEEMISSSSTGKEQSHIPLETRQTICRIGNAIRVLS 271
>UNIPROTKB|Q95Z16 [details] [associations]
symbol:RRP4 "Rrp4p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR003029 InterPro:IPR026699 PROSITE:PS50126 GO:GO:0003723
GO:GO:0000178 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
EMBL:AJ308995 ProteinModelPortal:Q95Z16 IntAct:Q95Z16 STRING:Q95Z16
Uniprot:Q95Z16
Length = 301
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 85/261 (32%), Positives = 140/261 (53%)
Query: 41 YLEGYMTGHGTFPDDE--------EIKASVGGVVEKVNQLVSVRAMNSRYXXXXXXXXXX 92
+L GY T G P+ EI AS+ G+VE +++VSV+ M+SRY
Sbjct: 29 FLRGYNTYEGNNPNGAAAAQEGGGEIIASINGMVEVTDRVVSVKGMSSRYVAEVGDIVVG 88
Query: 93 RVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEIH 152
RV + +W VD + ++ + L +V PGG RRR DE MR EG+L+ AE+
Sbjct: 89 RVKEVCGNRWRVDVGAFQDAVMPLANVTEPGGILRRRGRSDELTMRNIFDEGELVVAEVQ 148
Query: 153 QISTEGSLTLHTRS-LKYGKLGQ-GILLTVPPSLIRRSKSHF-CNLACGAQVILGCNGYV 209
++S +G ++LHTRS KYGKL G+L+ + P+L++R K HF C ++LG NG +
Sbjct: 149 RVSQDGLISLHTRSGEKYGKLSDFGLLVLISPALVKRVKHHFMCLEFIHVNLVLGTNGAI 208
Query: 210 WVSAIDENKSGGFIQNM-EVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEESLK 268
WVS + ++ + R +TR+ N I+ + ++ +FD SI+ A + S+
Sbjct: 209 WVSPATATTATESAKSAYDRFDADIRRAVTRVANCIRVMGNARFPVFDKSIEAAVKASID 268
Query: 269 Y--STYDLLKPESKLDLVLCT 287
+ +++L P ++ +L+ T
Sbjct: 269 FVLGPFEILYPGNQ-NLITTT 288
>GENEDB_PFALCIPARUM|PFD0515w [details] [associations]
symbol:PFD0515w "exosome complex exonuclease
rrp4, putative" species:5833 "Plasmodium falciparum" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR003029 InterPro:IPR026699
PROSITE:PS50126 GO:GO:0003723 GO:GO:0000178 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0006364 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 KO:K03679 PANTHER:PTHR21321
RefSeq:XP_001351417.1 ProteinModelPortal:Q9U0I4
EnsemblProtists:PFD0515w:mRNA GeneID:812382 KEGG:pfa:PFD0515w
EuPathDB:PlasmoDB:PF3D7_0410400 HOGENOM:HOG000283974 OMA:PPYLVKR
ProtClustDB:CLSZ2432944 Uniprot:Q9U0I4
Length = 338
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 82/261 (31%), Positives = 132/261 (50%)
Query: 32 ILTPGETV---EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXX 88
++ PGE V + ++ G G + +D+ A + G V +N+L+ V + +Y
Sbjct: 51 LVLPGECVLDKNDKDRFLKGGGLYEEDDMFYACILGRVNYINKLIYVEPLKGKYTGSVGD 110
Query: 89 XXXXRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
++ + + KW+V+ S + L ++ N+ QR R D M K D+I+
Sbjct: 111 LLVGKIKDISNDKWIVEIGSYCRAYLSISQTNISIFSQRIRLYNDVINMIHIYKPDDIIA 170
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGY 208
EI +IST+G++ LHTRS YGKL G+L+ VP +LI K H C Q+ILG NGY
Sbjct: 171 CEIQRISTDGTIILHTRSSIYGKLSNGVLIIVPQTLIHNQKKHIFVFPCNVQIILGMNGY 230
Query: 209 VWVSA-IDENKS---GGFIQNMEVVKLSD-----RETITRLNNVIKALAESKVML-FDT- 257
+W+S+ I ++K QN+E K D R+ IT + N+IK L + + + +DT
Sbjct: 231 IWISSPIKKSKDTNPNSVDQNIEENKFEDVDHTTRKNITIITNIIKLLVKYHININYDTI 290
Query: 258 -SIQYAYEESLKYSTYDLLKP 277
I Y + + +LKP
Sbjct: 291 NKIYVHYTSNTNNTPSYILKP 311
>UNIPROTKB|Q9U0I4 [details] [associations]
symbol:PFD0515w "Exosome complex exonuclease rrp4,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000178 "exosome
(RNase complex)" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR003029 InterPro:IPR026699 PROSITE:PS50126
GO:GO:0003723 GO:GO:0000178 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AL844503 GO:GO:0006364 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 KO:K03679 PANTHER:PTHR21321 RefSeq:XP_001351417.1
ProteinModelPortal:Q9U0I4 EnsemblProtists:PFD0515w:mRNA
GeneID:812382 KEGG:pfa:PFD0515w EuPathDB:PlasmoDB:PF3D7_0410400
HOGENOM:HOG000283974 OMA:PPYLVKR ProtClustDB:CLSZ2432944
Uniprot:Q9U0I4
Length = 338
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 82/261 (31%), Positives = 132/261 (50%)
Query: 32 ILTPGETV---EYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYXXXXXX 88
++ PGE V + ++ G G + +D+ A + G V +N+L+ V + +Y
Sbjct: 51 LVLPGECVLDKNDKDRFLKGGGLYEEDDMFYACILGRVNYINKLIYVEPLKGKYTGSVGD 110
Query: 89 XXXXRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
++ + + KW+V+ S + L ++ N+ QR R D M K D+I+
Sbjct: 111 LLVGKIKDISNDKWIVEIGSYCRAYLSISQTNISIFSQRIRLYNDVINMIHIYKPDDIIA 170
Query: 149 AEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLACGAQVILGCNGY 208
EI +IST+G++ LHTRS YGKL G+L+ VP +LI K H C Q+ILG NGY
Sbjct: 171 CEIQRISTDGTIILHTRSSIYGKLSNGVLIIVPQTLIHNQKKHIFVFPCNVQIILGMNGY 230
Query: 209 VWVSA-IDENKS---GGFIQNMEVVKLSD-----RETITRLNNVIKALAESKVML-FDT- 257
+W+S+ I ++K QN+E K D R+ IT + N+IK L + + + +DT
Sbjct: 231 IWISSPIKKSKDTNPNSVDQNIEENKFEDVDHTTRKNITIITNIIKLLVKYHININYDTI 290
Query: 258 -SIQYAYEESLKYSTYDLLKP 277
I Y + + +LKP
Sbjct: 291 NKIYVHYTSNTNNTPSYILKP 311
>ASPGD|ASPL0000038971 [details] [associations]
symbol:AN10406 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR026699 EMBL:BN001306 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
OMA:GNKRWKV EnsemblFungi:CADANIAT00009613 Uniprot:C8VHJ5
Length = 390
Score = 298 (110.0 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 69/169 (40%), Positives = 99/169 (58%)
Query: 22 LIEIHEFTDPILTPGETVEYLEGYMT--------GHGTF--PDDEEIKASVGGVVEKVNQ 71
LIE + I+TPGE V +M GHGT+ P I A+V G V+K N+
Sbjct: 49 LIEGVDIGTGIITPGEVVTNDPQWMRLTSSLSSRGHGTYTNPLSTSIIATVAGTVQKTNK 108
Query: 72 LVSVRAMNSRYXXXXXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSV 131
L+SV+ + +RY R+ +QS++W VD + L + L L+++NLPGG RRR+
Sbjct: 109 LLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTS 168
Query: 132 QDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTV 180
DE +R F EGDL+ AE+ + ++G+ +LHTRSLKYGKL G+ L V
Sbjct: 169 ADELQIRTFFSEGDLLVAEVQTVHSDGAASLHTRSLKYGKLRNGVFLAV 217
Score = 56 (24.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 208 YVWVSAIDENKSGGFI--QNMEVVKLSDRETITRLNNVIKALAESKVMLFDTSIQYAYEE 265
+V ++ ++E S QN E+ + RE I RL I+ L + + + + ++ AY+
Sbjct: 289 HVSITRMEEMVSNSVYSSQNDEISPATRRE-IARLTQCIRVLVQGGLRVDEETVTAAYDA 347
Query: 266 SLK 268
SL+
Sbjct: 348 SLQ 350
>UNIPROTKB|A3KFL5 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
GO:GO:0003723 EMBL:AL359092 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097
HOGENOM:HOG000193685 ChiTaRS:EXOSC2 IPI:IPI00645362 SMR:A3KFL5
Ensembl:ENST00000495699 Uniprot:A3KFL5
Length = 270
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 74/175 (42%), Positives = 107/175 (61%)
Query: 125 EQRRRSVQDEEMMRE--FLKEGDLISAEIHQISTEGSLTLHTRSLKYG---KLGQGILLT 179
+Q+R V+ + L +L E+ + S E L + L+ G LGQG+L+
Sbjct: 92 QQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRG-FLQEGDLISLGQGVLVQ 150
Query: 180 VPPSLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRET 236
V PSL++R K+HF +L CGA VILG NG++W+ E+K +GGFI N+E V L+DRE
Sbjct: 151 VSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREV 210
Query: 237 ITRLNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
I+RL N I +L ++ML+DTSI Y YE SL + D+LKPE ++V+ T Q+L
Sbjct: 211 ISRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRL 265
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 67/148 (45%), Positives = 95/148 (64%)
Query: 1 MAEEKDKPVIEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKA 60
MA E PV L S+R+ + H ++ PG+T+ G+M GHGT+ +E++ A
Sbjct: 1 MAMEMRLPVARKPL-SERLGRDTKKH-----LVVPGDTITTDTGFMRGHGTYMGEEKLIA 54
Query: 61 SVGGVVEKVNQLVSVRAMNSRYXXXXXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVN 120
SV G VE+VN+L+ V+A+ +RY R+T +Q ++W V+TNS L+S L L+S+N
Sbjct: 55 SVAGSVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMN 114
Query: 121 LPGGEQRRRSVQDEEMMREFLKEGDLIS 148
LPGGE RRRS +DE MR FL+EGDLIS
Sbjct: 115 LPGGELRRRSAEDELAMRGFLQEGDLIS 142
>UNIPROTKB|B4DKK6 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] InterPro:IPR026699 GO:GO:0003723
EMBL:AL359092 GO:GO:0004527 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097 ChiTaRS:EXOSC2
IPI:IPI00645362 EMBL:AK296605 SMR:B4DKK6 STRING:B4DKK6
Ensembl:ENST00000546165 UCSC:uc011mbz.1 Uniprot:B4DKK6
Length = 267
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 72/172 (41%), Positives = 105/172 (61%)
Query: 125 EQRRRSVQDEEMMRE--FLKEGDLISAEIHQISTEGSLTLHTRSLKYGKLGQGILLTVPP 182
+Q+R V+ + L +L E+ + S E L + L+ G L G+L+ V P
Sbjct: 92 QQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRG-FLQEGDLISGVLVQVSP 150
Query: 183 SLIRRSKSHFCNLACGAQVILGCNGYVWVSAIDENK---SGGFIQNMEVVKLSDRETITR 239
SL++R K+HF +L CGA VILG NG++W+ E+K +GGFI N+E V L+DRE I+R
Sbjct: 151 SLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISR 210
Query: 240 LNNVIKALAESKVMLFDTSIQYAYEESLKYSTYDLLKPESKLDLVLCTAQKL 291
L N I +L ++ML+DTSI Y YE SL + D+LKPE ++V+ T Q+L
Sbjct: 211 LRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRL 262
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 69/155 (44%), Positives = 99/155 (63%)
Query: 1 MAEEKDKPVIEIMLASDRIDPLIEIHEFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKA 60
MA E PV L S+R+ + H ++ PG+T+ G+M GHGT+ +E++ A
Sbjct: 1 MAMEMRLPVARKPL-SERLGRDTKKH-----LVVPGDTITTDTGFMRGHGTYMGEEKLIA 54
Query: 61 SVGGVVEKVNQLVSVRAMNSRYXXXXXXXXXXRVTGLQSQKWVVDTNSILESALHLTSVN 120
SV G VE+VN+L+ V+A+ +RY R+T +Q ++W V+TNS L+S L L+S+N
Sbjct: 55 SVAGSVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMN 114
Query: 121 LPGGEQRRRSVQDEEMMREFLKEGDLISAEIHQIS 155
LPGGE RRRS +DE MR FL+EGDLIS + Q+S
Sbjct: 115 LPGGELRRRSAEDELAMRGFLQEGDLISGVLVQVS 149
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 298 288 0.00087 115 3 11 22 0.41 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 607 (65 KB)
Total size of DFA: 189 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.43u 0.10s 23.53t Elapsed: 00:00:03
Total cpu time: 23.43u 0.10s 23.53t Elapsed: 00:00:03
Start: Thu Aug 15 14:49:18 2013 End: Thu Aug 15 14:49:21 2013