RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10116
(298 letters)
>gnl|CDD|224022 COG1097, RRP4, RNA-binding protein Rrp4 and related proteins
(contain S1 domain and KH domain) [Translation,
ribosomal structure and biogenesis].
Length = 239
Score = 153 bits (389), Expect = 2e-45
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ V Y GHGT+ + +I +SV G+++ +LV V + RYI E+G+VV+
Sbjct: 10 IVLPGDLVLAEGSYKLGHGTYFEGGKIYSSVVGLLDVKGKLVRVIPLEGRYIPEVGDVVI 69
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G++ + W VD S + L L+ RR+ E+ +R FL GDL+ A++
Sbjct: 70 GKIIEVGPSGWKVDIGSPYPALLSLSDF------LRRKFENAEKDLRPFLNVGDLVYAKV 123
Query: 152 HQISTEGSLTLHTRSLKYGKLGQGILLTVPPSLIRRSKSHFCNLA------CGAQVILGC 205
+ +G + L + GKL G ++ +PPS + R ++ G ++I+G
Sbjct: 124 VDVDRDGEVELTLKDEGLGKLKNGQIVKIPPSKVPRVIGKKGSMLNMLKEKTGCEIIVGQ 183
Query: 206 NGYVWVSAIDE 216
NG +WV +E
Sbjct: 184 NGRIWVDGENE 194
>gnl|CDD|240215 cd05789, S1_Rrp4, S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like
RNA-binding domains are found in a wide variety of
RNA-associated proteins. Rrp4 protein is a subunit of
the exosome complex. The exosome plays a central role in
3' to 5' RNA processing and degradation in eukarytes and
archaea. Its functions include the removal of
incorrectly processed RNA and the maintenance of proper
levels of mRNA, rRNA and a number of small RNA species.
In Saccharomyces cerevisiae, the exosome includes nine
core components, six of which are homologous to
bacterial RNase PH. These form a hexameric ring
structure. The other three subunits (RrP4, Rrp40, and
Csl4) contain an S1 RNA binding domain and are part of
the "S1 pore structure".
Length = 86
Score = 114 bits (288), Expect = 2e-32
Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 6/92 (6%)
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREF 140
RYI E+G+VV+GRVT + ++W VD NS ++ L L+ VNLP R+ +DE MR +
Sbjct: 1 RYIPEVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVNLP------RTDEDELNMRSY 54
Query: 141 LKEGDLISAEIHQISTEGSLTLHTRSLKYGKL 172
L EGDLI AE+ + ++GS++LHTRSLKYGKL
Sbjct: 55 LDEGDLIVAEVQSVDSDGSVSLHTRSLKYGKL 86
>gnl|CDD|235233 PRK04163, PRK04163, exosome complex RNA-binding protein Rrp4;
Provisional.
Length = 235
Score = 88.0 bits (219), Expect = 1e-20
Identities = 62/231 (26%), Positives = 114/231 (49%), Gaps = 25/231 (10%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVVV 91
I+ PG+ + + G GT+ ++ +I ++V G+V+ + V V + +YI ++G++V+
Sbjct: 10 IVVPGDLLAE-GEFKAGRGTYKENGKIYSTVVGLVDIKDDKVRVIPLEGKYIPKVGDLVI 68
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLISAEI 151
G+VT + W VD NS ++ L ++ V G R + +R++L GD I A++
Sbjct: 69 GKVTDVTFSGWEVDINSPYKAYLPVSEV--LG----RPVNVEGTDLRKYLDIGDYIIAKV 122
Query: 152 HQI--STEGSLTLHTRSLKYGKLGQGILLTVPPS----LIRRSKSHFCNL--ACGAQVIL 203
+ + + LTL + L GK+ G ++ + P +I + S L G +I+
Sbjct: 123 KDVDRTRDVVLTLKGKGL--GKIEGGTIVEIKPVKVPRVIGKKGSMINMLKEETGCDIIV 180
Query: 204 GCNGYVWVSAIDENKSGGFIQNM--EVVKLSDRETITR-LNNVIKALAESK 251
G NG +W+ DE + + E +K +RE T L + IK E +
Sbjct: 181 GQNGRIWIKGPDEED-----EEIAIEAIKKIEREAHTSGLTDRIKEFLEEE 226
>gnl|CDD|239901 cd04454, S1_Rrp4_like, S1_Rrp4_like: Rrp4-like, S1-like RNA-binding
domain. S1-like RNA-binding domains are found in a wide
variety of RNA-associated proteins. Rrp4 protein, and
Rrp40 and Csl4 proteins, also represented in this group,
are subunits of the exosome complex. The exosome plays a
central role in 3' to 5' RNA processing and degradation
in eukarytes and archaea. Its functions include the
removal of incorrectly processed RNA and the maintenance
of proper levels of mRNA, rRNA and a number of small RNA
species. In Saccharomyces cerevisiae, the exosome
includes nine core components, six of which are
homologous to bacterial RNase PH. These form a hexameric
ring structure. The other three subunits (RrP4, Rrp40,
and Csl4) contain an S1 RNA binding domain and are part
of the "S1 pore structure".
Length = 82
Score = 71.4 bits (175), Expect = 5e-16
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 81 RYIGEIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREF 140
RY+ ++G++V+G VT + S+ W VD S + L +S D++ +R+
Sbjct: 1 RYLPDVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEK----------DKKEIRKS 50
Query: 141 LKEGDLISAEIHQISTEGSLTLHTRSLKYGKL 172
L+ GDLI A++ + + ++ L T + G +
Sbjct: 51 LQPGDLILAKVISLGDDMNVLLTTADNELGVI 82
>gnl|CDD|236547 PRK09521, PRK09521, exosome complex RNA-binding protein Csl4;
Provisional.
Length = 189
Score = 52.7 bits (127), Expect = 2e-08
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 35 PGETVEYLEGYMTGHGTFPDDEEIKASVGGVVE--KVNQLVSVRAMNSR-YIGEIGEVVV 91
PG+ + +E Y+ G GT+ D+ E+ ASV G V +N+ +SV + + G++V
Sbjct: 10 PGDYLAVIEEYLPGEGTYEDNGEVYASVVGKVFIDDINRKISVIPFKKTPPLLKKGDIVY 69
Query: 92 GRVTGLQSQKWVVDTNSILESALHLTSVNLPGG---EQRRRSVQDEEMMREFLKEGDLIS 148
GRV ++ Q+ +V SI E + + + Q + + + K GD++
Sbjct: 70 GRVVDVKEQRALVRIVSI-EGSERELATSKLAYIHISQVSDGYVES--LTDAFKIGDIVR 126
Query: 149 AEIHQISTEGSLTLHTRSLKYG 170
A++ IS L L T+ G
Sbjct: 127 AKV--ISYTDPLQLSTKGKDLG 146
>gnl|CDD|224021 COG1096, COG1096, Predicted RNA-binding protein (consists of S1
domain and a Zn-ribbon domain) [Translation, ribosomal
structure and biogenesis].
Length = 188
Score = 49.6 bits (119), Expect = 3e-07
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVV--EKVNQLVSVR-AMNSRYIGEIGE 88
+ PG+ + +E ++ G GT+ + EI+A+ GVV + N+++SV+ + + + G+
Sbjct: 7 FVLPGDVLAVIEEFLPGEGTYEEGGEIRAAATGVVRRDDKNRVISVKPGKKTPPLPKGGD 66
Query: 89 VVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEGDLIS 148
+V GRVT ++ Q+ +V + L + + E + + + GD++
Sbjct: 67 IVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVR 126
Query: 149 AEIHQISTEGSLTLHTRSLKYG 170
A + IST + L T+ G
Sbjct: 127 ARV--ISTGDPIQLSTKGNDLG 146
>gnl|CDD|206550 pfam14382, ECR1_N, Exosome complex exonuclease RRP4 N-terminal
region. ECR1_N is an N-terminal region of the exosome
complex exonuclease RRP proteins. It is a G-rich domain
which structurally is a rudimentary single hybrid fold
with a permuted topology.
Length = 39
Score = 43.5 bits (104), Expect = 2e-06
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVN 70
I+ PGE + YM GHGT+ +D I ASV GVV VN
Sbjct: 1 IVVPGERLGTASEYMPGHGTYVEDGNIYASVAGVVSIVN 39
>gnl|CDD|239157 cd02756, MopB_Arsenite-Ox, Arsenite oxidase (Arsenite-Ox) oxidizes
arsenite to the less toxic arsenate; it transfers the
electrons obtained from the oxidation of arsenite
towards the soluble periplasmic electron carriers
cytochrome c and/or amicyanin. Arsenite oxidase is a
heterodimeric enzyme containing a large and a small
subunit. The large catalytic subunit harbors the
molybdopterin cofactor and the [3Fe-4S] cluster; and the
small subunit belongs to the structural class of the
Rieske proteins. The small subunit is not included in
this alignment. Members of MopB_Arsenite-Ox CD belong to
the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 676
Score = 30.5 bits (69), Expect = 1.2
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 178 LTVPPSLIRRSKS--HFCNLACGAQVILGCNGYVWVSAIDENKSGGFI--QNMEVVKLSD 233
+ +PP R HFC + CG V YVW + GG QN L D
Sbjct: 3 VPLPPVNAERYNVTCHFCIVGCGYHV------YVW----PVGEEGGPSPGQNAIGYDLVD 52
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 30.3 bits (69), Expect = 1.4
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 20/73 (27%)
Query: 111 ESALHLTSVNLPGGEQR------------RRSVQDEEMMREFLKEGD----LISA---EI 151
ES LT + LP E RR V E +R F+ D L+ EI
Sbjct: 116 ESRYFLTLLYLPPAEDAARAERWLYEGRERRGVDWRERLRGFVDRTDRVLDLLDGFMPEI 175
Query: 152 HQISTEGSLT-LH 163
+ +LT LH
Sbjct: 176 AWLDDAETLTYLH 188
>gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain.
Length = 72
Score = 27.2 bits (61), Expect = 2.5
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRRSVQDEEMMREFLKEG 144
E+G+VV G VT + VD + +E + ++ E + V+D E LK G
Sbjct: 1 EVGDVVEGTVTEITPGGAFVDLGNGVEGLIPIS-------ELSDKRVKD---PEEVLKVG 50
Query: 145 DLISAEIHQISTE-GSLTLHTR 165
D + ++ + E G + L +
Sbjct: 51 DEVKVKVLSVDEEKGRIILSLK 72
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 29.4 bits (66), Expect = 2.8
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 61 SVGGVVEKVNQLVSVRAMNSRYIGEIGEVVVGRVTGLQSQKW 102
SVG V+ V V MN +GE+GE+V R L S W
Sbjct: 346 SVGKVIPTVAARVVDENMNDVPVGEVGEIVY-RAPTLMSGYW 386
>gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional.
Length = 895
Score = 29.2 bits (66), Expect = 2.9
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 90 VVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQRRR--------SVQDEEMMREFL 141
VVG VTG+Q ++ V D ++A + V+LP + R+R + Q E + F
Sbjct: 153 VVGGVTGIQVRETVPD--PFFDAADEVVLVDLPPDDLRQRLNEGKVYIAGQAERAIEHFF 210
Query: 142 KEGDLI 147
++G+LI
Sbjct: 211 RKGNLI 216
>gnl|CDD|226935 COG4569, MhpF, Acetaldehyde dehydrogenase (acetylating) [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 310
Score = 29.1 bits (65), Expect = 3.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 54 DDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEIGEVV---VGRVTGLQSQKWV 103
++I+AS+ +VE V V + R E+ V VG+V+GL++ W+
Sbjct: 217 SQDDIEASINEMVEAVQAYVPGYRLKQRVQFEVIPVNLPGVGQVSGLKTAVWL 269
>gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal
protein S1 domain) [Translation, ribosomal structure and
biogenesis].
Length = 129
Score = 28.0 bits (63), Expect = 3.5
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 26/93 (27%)
Query: 85 EIGEVVVGRVTGLQSQKWVVDTNSILESALHLTSVNLPGGEQ--------RRRSVQDEEM 136
++G + G++TG+ V+ L GG+ V+D
Sbjct: 4 KVGSKLKGKITGITPYGAFVE---------------LEGGKTGLVHISEIADGFVKD--- 45
Query: 137 MREFLKEGDLISAEIHQISTEGSLTLHTRSLKY 169
+ + LK G + ++ I G ++L R L+
Sbjct: 46 IHDHLKVGQEVKVKVLDIDENGKISLSIRKLEE 78
>gnl|CDD|239755 cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamily represents
the domain II of elongation factor G (EF-G) in bacteria
and, the C-terminus of mitochondrial Elongation factor
G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in
eukaryotes. During the process of peptide synthesis and
tRNA site changes, the ribosome is moved along the mRNA
a distance equal to one codon with the addition of each
amino acid. In bacteria this translocation step is
catalyzed by EF-G_GTP, which is hydrolyzed to provide
the required energy. Thus, this action releases the
uncharged tRNA from the P site and transfers the newly
formed peptidyl-tRNA from the A site to the P site.
Eukaryotic cells harbor 2 protein synthesis systems:
one localized in the cytoplasm, the other in the
mitochondria. Most factors regulating mitochondrial
protein synthesis are encoded by nuclear genes,
translated in the cytoplasm, and then transported to
the mitochondria. The eukaryotic system of elongation
factor (EF) components is more complex than that in
prokaryotes, with both cytoplasmic and mitochondrial
elongation factors and multiple isoforms being
expressed in certain species. mtEFG1 and mtEFG2 show
significant homology to bacterial EF-Gs. Mutants in
yeast mtEFG1 have impaired mitochondrial protein
synthesis, respiratory defects and a tendency to lose
mitochondrial DNA. No clear phenotype has been found
for mutants in the yeast homologue of mtEFG2, MEF2.
Length = 83
Score = 26.7 bits (60), Expect = 4.0
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 49 HGTFPDDEEIKASVGGVVEKVNQLVSVRAMNSRYIGEI--GEVVVGRVTGLQS 99
GT + S G E+V +L+ + + E G++ V GL+
Sbjct: 24 SGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGA--VAGLKD 74
>gnl|CDD|216394 pfam01259, SAICAR_synt, SAICAR synthetase. Also known as
Phosphoribosylaminoimidazole-succinocarboxamide
synthase.
Length = 243
Score = 27.7 bits (62), Expect = 6.6
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 20 DPLIEIHEFTDPILTPGETVEYLE--GYMTGHGTFPDDE 56
L+E D I P E+ E + +E
Sbjct: 114 PGLVESFYKPDAIFDPSTKAEHDENISFAQAELLVGKEE 152
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 27.9 bits (63), Expect = 6.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 133 DEEMMREFLKEGDLISAEIH 152
DEE+M ++L+EG+L E+
Sbjct: 209 DEELMEKYLEEGELTEEELR 228
>gnl|CDD|118098 pfam09562, RE_LlaMI, LlaMI restriction endonuclease. This family
includes the LlaMI (recognises and cleaves CC^NGG)
restriction endonuclease.
Length = 272
Score = 27.7 bits (61), Expect = 6.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 255 FDTSIQYAYEESLKYSTYDLLKPESKLDLVL 285
D SI Y++E+ L+ + +D++ E D +L
Sbjct: 143 LDISITYSFEKDLRDNKFDIIPKEFHHDEIL 173
>gnl|CDD|192936 pfam12095, DUF3571, Protein of unknown function (DUF3571). This
family of proteins is functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 85 to 97
amino acids in length.
Length = 83
Score = 26.1 bits (58), Expect = 7.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 32 ILTPGETVEYLEGYMTGHGTFPDD 55
LTP E + +L+ ++T + P D
Sbjct: 23 FLTPAELLAWLKEWLTRLDSLPAD 46
>gnl|CDD|219567 pfam07775, PaRep2b, PaRep2b protein. This is a family of proteins,
expressed in the crenarchaeon Pyrobaculum aerophilum,
whose members are variable in length and level of
conservation. The presence of numerous frameshifts and
internal stop codons in multiple alignments are thought
to indicate that most family members are no longer
functional.
Length = 510
Score = 27.9 bits (62), Expect = 7.6
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 21/77 (27%)
Query: 36 GETVEYLEGYMTGHGTFPDDEEIKASVGGVVEKVNQLVSV-RAMNSRYIGEIGEVVVGRV 94
GE V ++ Y TG +++ A GG EK +L S+ RA+ GEV V R
Sbjct: 93 GEEVAHINVYWTG-------KKLHAQFGGSREKAERLASILRALG-------GEVEVKRY 138
Query: 95 TGLQSQKWVVD--TNSI 109
G KW V T+ I
Sbjct: 139 GG----KWRVQLTTDGI 151
>gnl|CDD|216976 pfam02329, HDC, Histidine carboxylase PI chain. Histidine
carboxylase catalyzes the formation of histamine from
histidine. Cleavage of the proenzyme PI chain yields two
subunits, alpha and beta, which arrange as a hexamer
(alpha beta)6.
Length = 306
Score = 27.5 bits (61), Expect = 7.7
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 33/114 (28%)
Query: 11 EIMLASDRIDPLIEIH-------EFTDPILTPGETVEYLEGYMTGHGTFPDDEEIKASVG 63
+ + D I EF + PG GY+T +K SVG
Sbjct: 1 DAKVNKLGYDASNVIRIAISPYKEFCRGYMNPGA---IGNGYVTT---------LKLSVG 48
Query: 64 GVVEKVNQLVSVRAMNSR------------YIGEIGEVVVGRVTGLQSQKWVVD 105
V + A+ R YIG+I + G+Q + W D
Sbjct: 49 TV--DKTDDDVLDAITERIVSYDRCETNDAYIGQINMLTASSFCGVQGRIWGYD 100
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 27.8 bits (62), Expect = 9.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 120 NLPGGEQRRRS--------VQDEEMMREFLKEGDLISAEIHQISTEGSLTLHTRSLKYGK 171
LP GE +S ++ E+ F ++G + +I QI+ GSLT RS K
Sbjct: 538 TLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVK 597
Query: 172 LGQG 175
L QG
Sbjct: 598 LSQG 601
>gnl|CDD|237677 PRK14333, PRK14333, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 448
Score = 27.7 bits (62), Expect = 9.4
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 55 DEEIKASVGGVVEKVNQLVSVRAM--NSRYIGEIGEVVV 91
EE+K+ ++++N LV +A + RY+G I EV+V
Sbjct: 360 SEEVKSDR---LQRLNHLVEQKAAERSQRYLGRIEEVLV 395
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.375
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,984,364
Number of extensions: 1433451
Number of successful extensions: 1402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1392
Number of HSP's successfully gapped: 30
Length of query: 298
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 202
Effective length of database: 6,679,618
Effective search space: 1349282836
Effective search space used: 1349282836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)