BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10117
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 LERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
Length = 175
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 64
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYD 90
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 71
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYD 97
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K+L++G GK+ L D T E Y T GV R +E LD ++++W
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIW 87
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G +F ++ ++ R HGII V++
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYD 114
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 80
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYD 106
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
Length = 181
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 64
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYD 90
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 54
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 55 TAGQERFRTITSSYYRGAHGIIVVYD 80
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 61
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYD 87
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 61
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYD 87
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK L D T E Y T GV R +E LD ++++WD
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 71
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYD 97
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWD 59
K++++I+G GKT L D T E T GV +I E L K +++WD
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE----LRGKKIRLQIWD 81
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F S+ A+ R GII V++
Sbjct: 82 TAGQERFNSITSAYYRSAKGIILVYD 107
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
+K KI+++G GKT L + E Y PT S+ +DT + E+ LWDT
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA---SFEIDTQRIELSLWDT 62
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
SG +++V P D ++ F+ P + +L
Sbjct: 63 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 98
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
+K KI+++G GKT L + E Y PT S+ +DT + E+ LWDT
Sbjct: 22 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA---SFEIDTQRIELSLWDT 78
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
SG +++V P D ++ F+ P + +L
Sbjct: 79 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 114
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+KILI+G GK+ L D T E T GV + ++D +K ++ +WDT+G
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKV--KTISVDGNKAKLAIWDTAG 73
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F ++ P++ R G+I V++
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYD 96
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
+K KI+++G GKT L + E Y PT S+ +DT + E+ LWDT
Sbjct: 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA---SFEIDTQRIELSLWDT 83
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
SG +++V P D ++ F+ P + +L
Sbjct: 84 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 119
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
KI+++G GKT L C + T GV E + +D + +I+LWDT+G
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRE--RAVDIDGERIKIQLWDTAGQ 79
Query: 64 HKF-ESVWPAFQRDVHGIIFVFN 85
+F +S+ + R+VH ++FV++
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYD 102
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
KI+++G GKT L C + T GV E + +D + +I+LWDT+G
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRE--RAVDIDGERIKIQLWDTAG 87
Query: 63 DHKF-ESVWPAFQRDVHGIIFVFN 85
+F +S+ + R+VH ++FV++
Sbjct: 88 QERFRKSMVQHYYRNVHAVVFVYD 111
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWDT 60
+L++G GK+ L D T E Y T GV R +E LD ++++WDT
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWDT 54
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G +F ++ ++ R HGII V++
Sbjct: 55 AGQERFRTITSSYYRGAHGIIVVYD 79
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K+L++G GK+ L D T + Y T GV + +L+ ++++WDT+G
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDF--KIRTISLENKTVKLQIWDTAGQ 68
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F ++ ++ R HGII V++
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYD 90
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWDTS 61
K+L++G GK+ L D T +Y T GV +I E LD ++++WDT+
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE----LDGKTVKLQIWDTA 65
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F ++ ++ R HGII V++
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYD 89
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWDTS 61
K+L++G GK+ L D T +Y T GV +I E LD ++++WDT+
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE----LDGKTVKLQIWDTA 78
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F ++ ++ R HGII V++
Sbjct: 79 GQERFRTITSSYYRGSHGIIIVYD 102
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWDTS 61
K+L++G GK+ L D T +Y T GV +I E LD ++++WDT+
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE----LDGKTVKLQIWDTA 65
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F ++ ++ R HGII V++
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYD 89
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+LI+G GK+ L D T + Y T GV R VE ++ K ++++WD
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE------INGEKVKLQIWD 64
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ + R HG+I V++
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYD 90
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L + + +++Y T G + E + D T +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT-MQVWDTAG 67
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNN 110
+F+S+ AF R + V++ + + D F+ +++N+
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K++++G + GKT + L E Y PT C + + + E+ LWDTS
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET---EEQRVELSLWDTS 83
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
G +++V P D ++ F+ P + L
Sbjct: 84 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 118
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K K++ LG GKT + T Y T G+ + + LD ++LWDT+
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLS--KTLYLDEGPVRLQLWDTA 58
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ P++ RD I V++
Sbjct: 59 GQERFRSLIPSYIRDSAAAIVVYD 82
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K++++G + GKT + L E Y PT C + + + E+ LWDTS
Sbjct: 11 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET---EEQRVELSLWDTS 67
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
G +++V P D ++ F+ P + L
Sbjct: 68 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 102
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K++++G + GKT + L E Y PT C + + + E+ LWDTS
Sbjct: 10 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET---EEQRVELSLWDTS 66
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
G +++V P D ++ F+ P + L
Sbjct: 67 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSAL 101
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK++++G GK+ + C ++Y T GV +E ++ + LWDT+G
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLE--RQIQVNDEDVRLMLWDTAG 63
Query: 63 DHKFESVWPAFQRDVHGIIFVFNS 86
+F+++ A+ R + VF++
Sbjct: 64 QEEFDAITKAYYRGAQACVLVFST 87
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV-----RIVECEHSYALDTSKTEIEL 57
IK+++LG GK+ + AE PT G R+ EH+ + E+
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-------VKFEI 56
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP 89
WDT+G +F S+ P + R+ + V++ P
Sbjct: 57 WDTAGQERFASLAPXYYRNAQAALVVYDVTKP 88
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K K++ LG GKT L + Y T G+ + + L+ ++LWDT+
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTIRLQLWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ P++ RD + V++
Sbjct: 64 GQERFRSLIPSYIRDSAAAVVVYD 87
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
KI++ G GK+ LC E T GV + +D +T ++LWDT+G
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIVDGERTVLQLWDTAGQ 87
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F S+ ++ R G++ +++
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYD 109
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
IK+L LG GKT D ++ T G+ E Y K
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
++LWDT+G +F S+ AF RD G + +F+
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 116
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K+++LG GKT L C+ +++ T G + + + + +WDT+G
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLT--KKLNIGGKRVNLAIWDTAGQ 65
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F ++ P + RD +G I V++
Sbjct: 66 ERFHALGPIYYRDSNGAILVYD 87
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G + ++ +WD
Sbjct: 17 EMRILMVGLDGAGKTTVLYKL-KLGEVITTIPTIGFNVETVQYK------NISFTVWDVG 69
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G + S+W + R+ G+IFV +S I E + + +L N L+ N
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K K++ LG GKT L + Y T G+ + + L+ ++LWDT+
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 71
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ P++ RD + V++
Sbjct: 72 GQERFRSLIPSYIRDSTVAVVVYD 95
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
++IL++G AGKT + L L PT G + ++ +WD G
Sbjct: 1 MRILMVGLDGAGKTTVLYKL-KLGEVITTIPTIGFNVETVQYK------NISFTVWDVGG 53
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
+ S+W + R+ G+IFV +S I E + + +L N L+ N
Sbjct: 54 QDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 109
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K K++ LG GKT L + Y T G+ + + L+ ++LWDT+
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 59
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ P++ RD + V++
Sbjct: 60 GQERFRSLIPSYIRDSTVAVVVYD 83
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G + ++ +WD
Sbjct: 17 EMRILMVGLDGAGKTTVLYKL-KLGEVITTIPTIGFNVETVQYK------NISFTVWDVG 69
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G + S+W + R+ G+IFV +S I E + + +L N L+ N
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFAN 126
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K K++ LG GKT L + Y T G+ + + L+ ++LWDT+
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 58
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ P++ RD + V++
Sbjct: 59 GQERFRSLIPSYIRDSTVAVVVYD 82
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K K++ LG GKT L + Y T G+ + + L+ ++LWDT+
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTIRLQLWDTA 70
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ P++ RD + V++
Sbjct: 71 GLERFRSLIPSYIRDSAAAVVVYD 94
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
IK+L LG GKT D ++ T G+ E Y + K
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
++LWDT+G +F S+ AF RD G + +F+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
IK+L LG GKT D ++ T G+ E Y + K
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
++LWDT+G +F S+ AF RD G + +F+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++++ ++G +GKT N + +E+ PT G + + I++WD
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM------RKVTKGNVTIKIWDIG 75
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSG 87
G +F S+W + R V+ I+++ ++
Sbjct: 76 GQPRFRSMWERYCRGVNAIVYMIDAA 101
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
IK+L LG GKT D ++ T G+ E Y + K
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
++LWDT+G +F S+ AF RD G + F+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFD 102
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTS--------KTE 54
IK+L LG GKT D ++ T G+ E Y + K
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
++LWDT+G +F S+ AF RD G + F+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFD 102
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDT--------SKTE 54
IK L LG GKT + D ++ T G+ E Y + +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
++LWDT+G +F S+ AF RD G + +F+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFD 102
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K K++ LG GKT L + Y T G+ + + L+ ++LWDT+
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 73
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ P++ RD + V++
Sbjct: 74 GLERFRSLIPSYIRDSTVAVVVYD 97
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K K++ LG GKT L + Y T G+ + + L+ ++LWDT+
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ P++ RD + V++
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYD 87
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++++ ++G +GKT N + E+ PT G + + I+LWD
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM------RKITKGNVTIKLWDIG 75
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSG 87
G +F S+W + R V I+++ ++
Sbjct: 76 GQPRFRSMWERYCRGVSAIVYMVDAA 101
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K+++LG + AGK+ L E T G + A++ + + E+WDT+G
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQ 71
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
++ S+ P + R I VF+
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFD 93
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 3 IKILILGPIMAGKTVLANALCD-LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K++++G GKT L D A + T G+ +D K ++++WDT+
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDF--RNKVLDVDGVKVKLQMWDTA 68
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F SV A+ RD H ++ +++
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYD 92
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GKT + + + T G+ R +E LD + ++++WD
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIE------LDGKRIKLQIWD 61
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ A+ R GI+ V++
Sbjct: 62 TAGQERFRTITTAYYRGAMGIMLVYD 87
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++++ ++G +GKT N + E+ PT G + + I+LWD
Sbjct: 31 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM------RKITKGNVTIKLWDIG 84
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSG 87
G +F S+W + R V I+++ ++
Sbjct: 85 GQPRFRSMWERYCRGVSAIVYMVDAA 110
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+KIL++G GK+ L + + T G+ + ++ K +++LWDT+G
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQLWDTAG 78
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F ++ A+ R GII V++
Sbjct: 79 QERFRTITTAYYRGAMGIILVYD 101
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GKT + + + T G+ R +E LD + ++++WD
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIE------LDGKRIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ A+ R GI+ V++
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYD 89
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+KIL++G GK+ L + + T G+ + ++ K +++LWDT+G
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQLWDTAG 65
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F ++ A+ R GII V++
Sbjct: 66 QERFRTITTAYYRGAMGIILVYD 88
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 4 KILILGPIMAGKTVLANALCD-------LTTAEEYHPTQGVRIVECEHSYALDTSKTEIE 56
K+++LG GKT L C+ +TT + T+ + I + +
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI---------GGKRVNLA 72
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
+WDT+G +F ++ P + RD +G I V++
Sbjct: 73 IWDTAGQERFHALGPIYYRDSNGAILVYD 101
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 4 KILILGPIMAGKTVLANALCD-------LTTAEEYHPTQGVRIVECEHSYALDTSKTEIE 56
K+++LG GKT L C+ +TT + T+ + I + +
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI---------GGKRVNLA 58
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
+WDT+G +F ++ P + RD +G I V++
Sbjct: 59 IWDTAGQERFHALGPIYYRDSNGAILVYD 87
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + S LD + + E+WDT+
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT--QSVCLDDTTVKFEIWDTA 65
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 66 GQERYHSLAPMYYRGAQAAIVVYD 89
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
KIL++G GK+ L + + T G+ + ++ K +++LWDT+G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQLWDTAGQ 62
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F ++ A+ R GII V++
Sbjct: 63 ERFRTITTAYYRGAXGIILVYD 84
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG + GK+ L E T G + + LD + + E+WDT+
Sbjct: 6 QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYD 87
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G VEC + +WD
Sbjct: 17 EMRILMVGLDGAGKTTVLYKL-KLGEVITTIPTIGFN-VEC-----VQYCNISFTVWDVG 69
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G + S+W + + G+IFV +S I E + + +L N L+ N
Sbjct: 70 GQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVE-CEHSYALDTSKTEIELWDTSG 62
K++++G GKT N L T E H ++ VE + L T+ + ++WDT+G
Sbjct: 27 KVVLIGESGVGKT---NLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 83
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
++ ++ A+ R G + VF+
Sbjct: 84 LERYRAITSAYYRGAVGALLVFD 106
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+KIL++G GK+ L + + T G+ + ++ K ++++WDT+G
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQIWDTAG 61
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F ++ A+ R GII V++
Sbjct: 62 QERFRTITTAYYRGAMGIILVYD 84
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVE-CEHSYALDTSKTEIELWDTS 61
K++++G GKT N L T E H ++ VE + L T+ + ++WDT+
Sbjct: 11 FKVVLIGESGVGKT---NLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ ++ A+ R G + VF+
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFD 91
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRI-VECE-HSYALDTSKTEIELWDTS 61
KI+++G GKT L T + P QG I V+ + ++ K ++++WDT+
Sbjct: 28 KIVLIGNAGVGKTCLVRRF----TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ ++ R + +I ++
Sbjct: 84 GQERFRSITQSYYRSANALILTYD 107
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K+++LG + GK+ L E+Y PT E SY +D + +E+ D
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPT-------IEDSYRKQVEVDAQQCMLEILD 59
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
T+G +F ++ + ++ G V++ ++L + + D ++ +L+ N
Sbjct: 60 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 118
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
KIL++G GK+ L + + T G+ + ++ K ++++WDT+G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQIWDTAGQ 62
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F ++ A+ R GII V++
Sbjct: 63 ERFRTITTAYYRGAXGIILVYD 84
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G + GKT L E Y PT V +D + E+ LWDT
Sbjct: 5 IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 61
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 96
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 64
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 65 GQERYHSLAPXYYRGAQAAIVVYD 88
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 60
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYD 84
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 64
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 65 GQERYHSLAPMYYRGAQAAIVVYD 88
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYD 87
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYD 87
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYD 87
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 3 IKILILGPIMAGKTVLAN--------ALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTE 54
K +I+G + GK+ L + A C T E+ G RI+E + K +
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF----GTRIIE------VSGQKIK 65
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
+++WDT+G +F +V ++ R G + V++
Sbjct: 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYD 96
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G GKT + +E T GV + + + ++++WDT+G
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDF--TMKTLEIQGKRVKLQIWDTAGQ 88
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F ++ ++ R +G I ++
Sbjct: 89 ERFRTITQSYYRSANGAILAYD 110
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
KILI+G GKT D + + T G+ + + Y D + ++++WDT+G
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF-KVKTIYRND-KRIKLQIWDTAG 63
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
++ ++ A+ R G I +++
Sbjct: 64 QERYRTITTAYYRGAMGFILMYD 86
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYD 87
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQ--GVRIVECEHSYALDTSKTEIELWD 59
+ K+++LG GK+ L ++H Q ++ + LD + + E+WD
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVK----GQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWD 60
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G ++ S+ P + R I V++
Sbjct: 61 TAGQERYHSLAPMYYRGAQAAIVVYD 86
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELW 58
+++IL+LG AGKT L L L + + H PTQG I ++ + ++ +W
Sbjct: 15 QEVRILLLGLDNAGKTTL---LKQLASEDISHITPTQGFNI------KSVQSQGFKLNVW 65
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFNSG 87
D G K W ++ + +I+V +S
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSA 94
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWD 59
+++IL+LG AGKT L L L + + H PTQG I ++ + ++ +WD
Sbjct: 17 EVRILLLGLDNAGKTTL---LKQLASEDISHITPTQGFNI------KSVQSQGFKLNVWD 67
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSG 87
G K W ++ + +I+V +S
Sbjct: 68 IGGQRKIRPYWRSYFENTDILIYVIDSA 95
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTE--IELWDTS 61
K++ILG GKT LA+ + +E Y PT VE +S + K E + L DT+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPT-----VENTYSKIVTLGKDEFHLHLVDTA 80
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ + +F VHG + V++
Sbjct: 81 GQDEYSILPYSFIIGVHGYVLVYS 104
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWD 59
+++IL+LG AGKT L L L + + H PTQG I ++ + ++ +WD
Sbjct: 4 EVRILLLGLDNAGKTTL---LKQLASEDISHITPTQGFNI------KSVQSQGFKLNVWD 54
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSG 87
G K W ++ + +I+V +S
Sbjct: 55 IGGQRKIRPYWRSYFENTDILIYVIDSA 82
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 6 QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYD 87
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 18/90 (20%)
Query: 4 KILILGPIMAGKTVLAN--------ALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEI 55
K +I+G + GK+ L + A C T E+ G RI+E + K ++
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF----GTRIIE------VSGQKIKL 81
Query: 56 ELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
++WDT+G +F +V ++ R G + V++
Sbjct: 82 QIWDTAGQGRFRAVTRSYYRGAAGALMVYD 111
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++++G GKT L D E Y PT R + + + + +WDT+G
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV---NLQVKGKPVHLHIWDTAG 91
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL 96
++ + P F D ++ F+ P +
Sbjct: 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIF 125
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGV----RIVECEHSYALDTSKTEIE 56
KI+++G GK+ N L TT E E T GV R +E E+ K + +
Sbjct: 12 KIVLIGDSGVGKS---NLLSRFTTDEFNIESKSTIGVEFATRTIEVENK------KIKAQ 62
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
+WDT+G ++ ++ A+ R G + V++
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALIVYD 91
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 62
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYD 86
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K L++G GK+ L + + ++ + T GV +I+ Y ++++W
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY------VKLQIW 64
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G +F SV ++ R G + V++
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYD 91
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K L++G GK+ L + + ++ + T GV +I+ Y ++++W
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY------VKLQIW 65
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G +F SV ++ R G + V++
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYD 92
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
++ + G GK+ L T E Y PT E +Y + D S +++ D
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPT-------VEDTYRQVISCDKSICTLQITD 57
Query: 60 TSGDHKFESVWPAFQR----DVHGIIFVFNSGVPGHISELLLFYDYFV-TQSDLNNHKCL 114
T+G H+F PA QR H I V++ + EL Y+ + D+ + +
Sbjct: 58 TTGSHQF----PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM 113
Query: 115 LIDNV---KPGRGDSSGHAHSLRR 135
L+ N P R S A +L R
Sbjct: 114 LVGNKCDESPSREVQSSEAEALAR 137
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
K+LI+G GKT D T + T G+ + + Y + + ++++WDT+G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF-KVKTVYRHE-KRVKLQIWDTAG 81
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
++ ++ A+ R G I +++
Sbjct: 82 QERYRTITTAYYRGAMGFILMYD 104
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ K+++LG GK+ L E T G + + LD + + E+WDT+
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTA 62
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ S+ P + R I V++
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYD 86
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G + E+ +WD
Sbjct: 17 EMRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFNVETVEYK------NISFTVWDVG 69
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + ++ G+IFV +S ++E
Sbjct: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 102
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G + E+ +WD
Sbjct: 16 EMRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFNVETVEYK------NISFTVWDVG 68
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + ++ G+IFV +S ++E
Sbjct: 69 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 101
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 18/90 (20%)
Query: 4 KILILGPIMAGKTVLA--------NALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEI 55
K +I+G GK+ L + DLT E+ G R+V +D + ++
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF----GARMVN------IDGKQIKL 72
Query: 56 ELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
++WDT+G F S+ ++ R G + V++
Sbjct: 73 QIWDTAGQESFRSITRSYYRGAAGALLVYD 102
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G + E+ T +WD
Sbjct: 17 QMRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFNVETVEYKNICFT------VWDVG 69
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
G + +W + ++ G+IFV +S I E+
Sbjct: 70 GQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEV 103
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++++G GK+ N L T E E T GV S +D + ++WDT
Sbjct: 22 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDGKTIKAQIWDT 76
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G ++ ++ A+ R G + V++
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYD 101
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
++IL++G AGKT + L L PT G + E+ +WD G
Sbjct: 1 MRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFNVETVEYK------NISFTVWDVGG 53
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
K +W + ++ G+IFV +S ++E
Sbjct: 54 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 85
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
K L++G GK+ L + + ++ + T GV + T K +++WDT+G
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVK--LQIWDTAG 83
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F SV ++ R G + V++
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYD 106
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
M+++IL+LG AGKT + L L + PT G + + + +WD
Sbjct: 2 MEMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYK------NVKFNVWDV 54
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + G+IFV + I E
Sbjct: 55 GGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 88
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWD 59
+++IL+LG AGKT L L L + + H PTQG I ++ + ++ +WD
Sbjct: 4 EVRILLLGLDNAGKTTL---LKQLASEDISHITPTQGFNI------KSVQSQGFKLNVWD 54
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSG 87
G K W ++ + +I+V +S
Sbjct: 55 IGGLRKIRPYWRSYFENTDILIYVIDSA 82
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++++G GK+ N L T E E T GV S +D + ++WDT
Sbjct: 31 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDGKTIKAQIWDT 85
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G ++ ++ A+ R G + V++
Sbjct: 86 AGQERYRAITSAYYRGAVGALLVYD 110
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
Length = 172
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
M+++IL+LG AGKT + L L + PT G + + + +WD
Sbjct: 1 MEMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYK------NVKFNVWDV 53
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + G+IFV + I E
Sbjct: 54 GGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 87
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K+++LG GK+ L E+Y PT E SY +D + +E+ D
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPT-------IEDSYRKQVEVDAQQCMLEILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
T+G +F ++ + ++ G V++ ++L + + D ++ +L+ N
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 116
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 63
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 64 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 98
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 62
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 97
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G + E+ T +WD
Sbjct: 29 QMRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFNVETVEYKNICFT------VWDVG 81
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + ++ G+IFV +S + E
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQE 114
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 60
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 95
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G + E+ +WD
Sbjct: 20 EMRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFNVETVEYK------NISFTVWDVG 72
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + ++ G+IFV +S + E
Sbjct: 73 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE 105
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 5 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 61
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 96
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRI-VEC-EHSYALDTSKTEIELWDTS 61
K +I+G GK+ L D + + P + I VE +D + ++++WDT+
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTD----KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTA 67
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G F S+ ++ R G + V++
Sbjct: 68 GQESFRSITRSYYRGAAGALLVYD 91
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G + E+ +WD
Sbjct: 165 EMRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFNVETVEYK------NISFTVWDVG 217
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + ++ G+IFV +S ++E
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 250
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 62
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 97
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 8 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 64
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 65 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 99
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G + GKT L Y PT V +D + E+ LWDT
Sbjct: 4 IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYV---ADIEVDGKQVELALWDT 60
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ P D I+ F+ P + +
Sbjct: 61 AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENI 95
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL++G AGKT + L L PT G + E+ +WD
Sbjct: 17 EMRILMVGLDAAGKTSILYKL-KLGEIVTTIPTIGFNVETVEYK------NISFTVWDVG 69
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G K +W + ++ IIFV +S I E + + ++ N L+ N
Sbjct: 70 GQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFAN 126
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K L++G GK+ L + + ++ + T GV +I+ Y ++++W
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY------VKLQIW 62
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G +F SV ++ R G + V++
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYD 89
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++++G GKT L E Y PT V +D + E+ LWDT
Sbjct: 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 80
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENI 115
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 62
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 97
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++++L+LG AGKT + + + PT G I EH ++ +WD
Sbjct: 18 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHR------GFKLNIWDVG 70
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSG 87
G S W + G+I+V +S
Sbjct: 71 GQKSLRSYWRNYFESTDGLIWVVDSA 96
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++++L+LG AGKT + + + PT G I EH ++ +WD
Sbjct: 18 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHR------GFKLNIWDVG 70
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSG 87
G S W + G+I+V +S
Sbjct: 71 GQKSLRSYWRNYFESTDGLIWVVDSA 96
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
KILI+G GKT D + + T G+ + + Y D + ++++WDT+G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF-KVKTIYRND-KRIKLQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
++ ++ A+ R G I ++
Sbjct: 67 LERYRTITTAYYRGAXGFILXYD 89
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL+LG AGKT + L L + PT G + + + +WD
Sbjct: 12 EMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYK------NVKFNVWDVG 64
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + G+IFV + I E
Sbjct: 65 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 97
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL+LG AGKT + L L + PT G + + + +WD
Sbjct: 13 EMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYK------NVKFNVWDVG 65
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + G+IFV + I E
Sbjct: 66 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 98
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
++IL+LG AGKT + L L + PT G + + + +WD G
Sbjct: 1 MRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYK------NVKFNVWDVGG 53
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
K +W + G+IFV + I E
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT + +D + E+ LWDT
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI---ADIEVDGKQVELALWDT 80
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 115
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
++IL+LG AGKT + L L + PT G + + + +WD G
Sbjct: 1 MRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYK------NVKFNVWDVGG 53
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
K +W + G+IFV + I E
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++++L+LG AGKT + + + PT G I EH ++ +WD
Sbjct: 16 ELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKTLEHR------GFKLNIWDVG 68
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSG 87
G S W + G+I+V +S
Sbjct: 69 GQKSLRSYWRNYFESTDGLIWVVDSA 94
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K+++LG GK+ L +EY PT E SY +D + +E+ D
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPT-------IEDSYRKQVEVDCQQCMLEILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
T+G +F ++ + ++ G V++ ++L + + D + +L+ N
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
++IL++G AGKT + L L PT G + E+ +WD G
Sbjct: 3 MRILMVGLDAAGKTTILYKL-KLGEIVTTIPTIGFNVETVEYK------NISFTVWDVGG 55
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
K +W + ++ G+IFV +S ++E
Sbjct: 56 LDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 87
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++++G GK+ N L T E E T GV S +D + ++WDT
Sbjct: 7 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDGKTIKAQIWDT 61
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G ++ + A+ R G + V++
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYD 86
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
K+L++G GKT D + + T G+ + + Y D + ++++WDT+G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF-KVKTVYRHD-KRIKLQIWDTAG 80
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
++ ++ A+ R G + +++
Sbjct: 81 QERYRTITTAYYRGAMGFLLMYD 103
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K+++LG GK+ L E+Y PT E SY +D + +E+ D
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPT-------IEDSYRKQVEVDCQQCMLEILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
T+G +F ++ + ++ G V++ ++L + + D + +L+ N
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT + +D + E+ LWDT
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI---ADIEVDGKQVELALWDT 80
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 115
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++++G GK+ N L T E E T GV S +D + ++WDT
Sbjct: 31 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDGKTIKAQIWDT 85
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G ++ ++ A+ R G + V++
Sbjct: 86 AGLERYRAITSAYYRGAVGALLVYD 110
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++++G GK+ N L T E E T GV S +D + ++WDT
Sbjct: 10 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDGKTIKAQIWDT 64
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G ++ ++ A+ R G + V++
Sbjct: 65 AGLERYRAITSAYYRGAVGALLVYD 89
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 9 IRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYV---ADVEVDGRRVELALWDT 65
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D + ++ F+ +P + +
Sbjct: 66 AGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENV 100
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 60
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 95
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 60
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 95
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL+LG AGKT + L L + PT G + + + +WD
Sbjct: 322 EMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYK------NVKFNVWDVG 374
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + G+IFV + I E
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 407
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 60
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 95
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 58
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 59 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 93
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 58
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 59 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 93
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++++G GK+ N L T E E T GV S +D + ++WDT
Sbjct: 13 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDGKTIKAQIWDT 67
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G ++ ++ A+ R G + V++
Sbjct: 68 AGLERYRAITSAYYRGAVGALLVYD 92
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++++G GK+ N L T E E T GV S +D + ++WDT
Sbjct: 7 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDGKTIKAQIWDT 61
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G ++ ++ A+ R G + V++
Sbjct: 62 AGLERYRAITSAYYRGAVGALLVYD 86
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 4 KILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K+L LG AGKT L + L + T +HPT S L + +D
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----------SEELAIGNIKFTTFDL 52
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G + +W + +V+GI+F+ ++ P E + D ++L + +++ N
Sbjct: 53 GGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 110
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+++L+LG AGKT + + + PT G I EH ++ +WD G
Sbjct: 2 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHR------GFKLNIWDVGG 54
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSG 87
S W + G+I+V +S
Sbjct: 55 LKSLRSYWRNYFESTDGLIWVVDSA 79
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT + +D + E+ LWDT
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYI---ADIEVDGKQVELALWDT 60
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 95
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++IL+LG AGKT + L L + PT G + + + +WD
Sbjct: 13 EMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYK------NVKFNVWDVG 65
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
G K +W + G+IFV + I E
Sbjct: 66 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 98
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 4 KILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K+L LG AGKT L + L + T +HPT S L + +D
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----------SEELAIGNIKFTTFDL 74
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G + +W + +V+GI+F+ ++ P E + D ++L + +++ N
Sbjct: 75 GGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 132
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTT-AEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ +L LG +GKT + N L ++ PT G I + +S ++D
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK------FKSSSLSFTVFDM 74
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNS 86
SG ++ ++W + ++ IIFV +S
Sbjct: 75 SGQGRYRNLWEHYYKEGQAIIFVIDS 100
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKT-EIELWD 59
KI+++G GK+ N L T E E T GV S L +K + ++WD
Sbjct: 9 KIVLIGDSGVGKS---NLLSRFTRDEFNLESKSTIGVEF--ATKSIQLKNNKIIKAQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G ++ ++ A+ R G + V++
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYD 89
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVE-CEHSYALDTSKTEIELWDTS 61
KI+++G GK+ N L T E ++ VE + ++ + + ++WDT+
Sbjct: 14 FKIVLIGDSGVGKS---NLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G ++ ++ A+ R G + V++
Sbjct: 71 GQERYRAITSAYYRGAVGALIVYD 94
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K+++LG GK+ L N + T GV + +D +++WDT+G
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLN--RDLEVDGRFVTLQIWDTAG 65
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F+S+ F R + F+
Sbjct: 66 QERFKSLRTPFYRGADCCLLTFS 88
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
+IL LG AGKT + L L + PT G + + + +WD G
Sbjct: 2 RILXLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYK------NVKFNVWDVGGQ 54
Query: 64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
K +W + G+IFV + I E
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++K+ +LG GK+ + + + +PT G + Y + K I WDT+
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI--WDTA 62
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F ++ P + R I V++
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYD 86
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 30 EYHPTQGVRIVECEHSYA----LDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
+Y PT E SY +D +++ DT+G +F ++ + R G + VF+
Sbjct: 33 DYDPT-------IEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFS 85
Query: 86 SGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G E+ F + D + +LI N
Sbjct: 86 VTDRGSFEEIYKFQRQILRVKDRDEFPMILIGN 118
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ K++I+G GKT L E Y PT V +D + E+ LWDT
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV---ADIEVDGKQVELALWDT 63
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL 95
+G ++ + P D I+ F+ P + +
Sbjct: 64 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 98
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++ILILG AGKT + L + PT G + L ++ +WD
Sbjct: 18 ELRILILGLDGAGKTTILYRL-QIGEVVTTKPTIGFNV------ETLSYKNLKLNVWDLG 70
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNS 86
G W + D +IFV +S
Sbjct: 71 GQTSIRPYWRCYYADTAAVIFVVDS 95
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G GK+ L E+Y PT+ LD + +I++ DT+G
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY---RKKVVLDGEEVQIDILDTAGQ 72
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+ ++ + R G + VF+
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFS 94
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
++IL++G AGKT + + L PT G + E +WD G
Sbjct: 18 VRILMVGLDAAGKTTILYKV-KLGEVVTTIPTIGFNVETVEFR------NISFTVWDVGG 70
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSG 87
K +W + + G+IFV +S
Sbjct: 71 QDKIRPLWRHYYSNTDGLIFVVDSN 95
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G GK+ L E+Y PT+ LD + +I++ DT+G
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVLDGEEVQIDILDTAGQ 62
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+ ++ + R G + VF+
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFS 84
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals
A Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G GK+ L E+Y PT+ LD + +I++ DT+G
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVLDGEEVQIDILDTAGQ 76
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+ ++ + R G + VF+
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFS 98
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G GK+ L E+Y PT+ LD + +I++ DT+G
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVLDGEEVQIDILDTAGQ 64
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+ ++ + R G + VF+
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFS 86
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y PT GV + H T++ I+ +W
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEV----HPLVFHTNRGPIKFNVW 64
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G KF + + I +F+
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFD 91
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G + GKT L + EY PT + +D+ + LWDT+G
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDSKPVNLGLWDTAG 67
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 68 QEDYDRLRPLSYPQTDVFLICFSLVS 93
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L L +EY PT E SY +D +++ D
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPT-------IEDSYRKQVVIDGETCLLDILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV 119
T+G ++ ++ + R G + VF ++ + + D ++ +L+ N
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 120 --KPGRGDSSGHAHSLRR 135
GR S A L R
Sbjct: 118 CDLAGRTVESRQAQDLAR 135
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G GK+ L E+Y PT+ LD + +I++ DT+G
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVLDGEEVQIDILDTAGL 65
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+ ++ + R G + VF+
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFS 87
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G + GKT L + EY PT + +D+ + LWDT+G
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDSKPVNLGLWDTAG 66
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 67 QEDYDRLRPLSYPQTDVFLICFSLVS 92
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
KI++LG GK+ L N + T GV + +D +++WDT+G
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLN--KDLEVDGHFVTMQIWDTAG 69
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F S+ F R + F+
Sbjct: 70 QERFRSLRTPFYRGSDCCLLTFS 92
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G GK+ L E+Y PT+ LD + +I++ DT+G
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVLDGEEVQIDILDTAGL 61
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+ ++ + R G + VF+
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFS 83
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L L +EY PT E SY +D +++ D
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPT-------IEDSYRKQVVIDGETCLLDILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ ++ + R G + VF
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVF 82
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++K+ +LG GK+ + + + +PT G + Y + K I WDT+
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI--WDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F ++ P + R I V++
Sbjct: 64 GLERFRALAPMYYRGSAAAIIVYD 87
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y PT GV + H T++ I+ +W
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEV----HPLVFHTNRGPIKFNVW 64
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G KF + + I +F+
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFD 91
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 13/138 (9%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L L +EY PT E SY +D +++ D
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPT-------IEDSYRKQVVIDGETCLLDILD 58
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV 119
T+G ++ ++ + R G + VF ++ + + D + +L+ N
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNK 118
Query: 120 K--PGRGDSSGHAHSLRR 135
P R + A L R
Sbjct: 119 SDLPSRTVDTKQAQDLAR 136
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L L +EY PT E SY +D +++ D
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPT-------IEDSYRKQVVIDGETCLLDILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ ++ + R G + VF
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVF 82
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L L +EY PT E SY +D +++ D
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPT-------IEDSYRKQVVIDGETCLLDILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ ++ + R G + VF
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVF 82
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L L +EY PT E SY +D +++ D
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPT-------IEDSYRKQVVIDGETCLLDILD 58
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ ++ + R G + VF
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVF 83
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++ LG AGKT L + L D + HPT S L + +D
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----------SEELTIAGMTFTTFDL 86
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G + VW + ++GI+F+ + + E + + +T ++N L++ N
Sbjct: 87 GGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGN 144
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 37 VRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF 84
V I ++Y + + ++WDT+G ++ S+ P + R I VF
Sbjct: 77 VIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
K+++LG GK+ L N + T GV + +D +++WDT+G
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN--KDLEVDGHFVTMQIWDTAG 67
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F S+ F R + F+
Sbjct: 68 QERFRSLRTPFYRGSDCCLLTFS 90
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDT---SKTEIELW 58
K+++++ G +GKT + N + ++ ++ + Y ++T + ++
Sbjct: 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKH--------ITATVGYNVETFEKGRVAFTVF 68
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFNS 86
D G KF +W + ++ +IFV +S
Sbjct: 69 DMGGAKKFRGLWETYYDNIDAVIFVVDS 96
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
K+++LG GK+ L N + T GV + +D +++WDT+G
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN--KDLEVDGHFVTMQIWDTAG 65
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F S+ F R + F+
Sbjct: 66 QERFRSLRTPFYRGSDCCLLTFS 88
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWDTS 61
K++I+G AGKT + L + E H PT G + E + + T +WD
Sbjct: 18 KVIIVGLDNAGKTTI---LYQFSMNEVVHTSPTIGSNVEE------IVINNTRFLMWDIG 68
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHIS 93
G S W + + +I V +S IS
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 100
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWDTS 61
K++I+G AGKT + L + E H PT G + E + + T +WD
Sbjct: 18 KVIIVGLDNAGKTTI---LYQFSMNEVVHTSPTIGSNVEE------IVINNTRFLMWDIG 68
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHIS 93
G S W + + +I V +S IS
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 100
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G GK+ L E+Y PT+ LD + +I++ DT+G
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVLDGEEVQIDILDTAGL 64
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+ ++ + R G + VF+
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFS 86
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWDTS 61
K++I+G AGKT + L + E H PT G + E + + T +WD
Sbjct: 23 KVIIVGLDNAGKTTI---LYQFSMNEVVHTSPTIGSNVEE------IVINNTRFLMWDIG 73
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHIS 93
G S W + + +I V +S IS
Sbjct: 74 GQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 105
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWDTS 61
K++I+G AGKT + L + E H PT G + E + + T +WD
Sbjct: 24 KVIIVGLDNAGKTTI---LYQFSMNEVVHTSPTIGSNVEE------IVINNTRFLMWDIG 74
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHIS 93
G S W + + +I V +S IS
Sbjct: 75 GQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 106
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWDTS 61
K++I+G AGKT + L E H PT G + E + T +WD
Sbjct: 18 KVIIVGLDNAGKTTI---LYQFLMNEVVHTSPTIGSNVEE------IVVKNTHFLMWDIG 68
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNS 86
G S W + + II V +S
Sbjct: 69 GQESLRSSWNTYYSNTEFIILVVDS 93
>pdb|2V24|A Chain A, Structure Of The Human Spry Domain-Containing Socs Box
Protein Ssb-4
Length = 208
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 38 RIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGH 91
R+ H A T ++ G H ++ WPA QR H ++ V + P H
Sbjct: 47 RLTFHRHPVAQSTDGIRGKVGHARGLHAWQINWPARQRGTHAVVGVATARAPLH 100
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 47 ALDTSKTEIELWDTSGDHKFESVWPAFQR----DVHGIIFVFNSGVPGHISELLLFYDYF 102
+ D S +++ DT+G H+F PA QR H I VF+ + EL Y
Sbjct: 50 SCDKSVCTLQITDTTGSHQF----PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLI 105
Query: 103 V 103
V
Sbjct: 106 V 106
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++KI++LG +GKT L T ++Y T G+ + + + T +++WD
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVT-LQIWDIG 64
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G + + G++ V++
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYD 88
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 13 AGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA 72
AGKT + + + PT G I EH ++ +WD G S W
Sbjct: 29 AGKTTILKKF-NGEDVDTISPTLGFNIKTLEHR------GFKLNIWDVGGQKSLRSYWRN 81
Query: 73 FQRDVHGIIFVFNSG 87
+ G+I+V +S
Sbjct: 82 YFESTDGLIWVVDSA 96
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+KI+++G GKT L A Y PT H + + LWDT+G
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV---FENFSHVMKYKNEEFILHLWDTAG 80
Query: 63 DHKFESVWPAFQRDVHGIIFVF 84
+++ + P D ++ F
Sbjct: 81 QEEYDRLRPLSYADSDVVLLCF 102
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+KI+++G GKT L A Y PT H + + LWDT+G
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV---FENFSHVMKYKNEEFILHLWDTAG 79
Query: 63 DHKFESVWPAFQRDVHGIIFVF 84
+++ + P D ++ F
Sbjct: 80 QEEYDRLRPLSYADSDVVLLCF 101
>pdb|2FNJ|A Chain A, Crystal Structure Of A B30.2SPRY DOMAIN-Containing Protein
Gustavus In Complex With Elongin B And Elongin C
Length = 226
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGH 91
T G H +E WP QR H ++ V + P H
Sbjct: 71 TKGLHIWEIYWPTRQRGTHAVVGVCTADAPLH 102
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT + ++Y T GV + H T++ I+ +W
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEV----HPLVFHTNRGPIKFNVW 69
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G KF + + I +F+
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFD 96
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYALDTSKTEIELW 58
++ K+ ++G GK+ L + + ++Y T GV +V + T E+ L
Sbjct: 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLL 78
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G ++ + V+ I VF+
Sbjct: 79 DTAGSDLYKEQISQYWNGVYYAILVFD 105
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 180
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK + +G GKT + + T +Y PT + +D S + LWDT+G
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAG 63
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+ + P R + F+
Sbjct: 64 QEDYNRLRPLSYRGADVFLLAFS 86
>pdb|2IHS|A Chain A, Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAVUS IN
Complex With A 20-Residue Vasa Peptide
pdb|2IHS|B Chain B, Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAVUS IN
Complex With A 20-Residue Vasa Peptide
Length = 214
Score = 28.9 bits (63), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGH 91
T G H +E WP QR H ++ V + P H
Sbjct: 73 TKGLHIWEIYWPTRQRGTHAVVGVCTADAPLH 104
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 15 KTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWDTSGDHKFESVW 70
K+ L T E+Y PT E Y +D+S + +E+ DT+G +F S+
Sbjct: 16 KSALTVQFVTGTFIEKYDPT-------IEDFYRKEIEVDSSPSVLEILDTAGTEQFASMR 68
Query: 71 PAFQRDVHGIIFVFN 85
+ ++ G I V++
Sbjct: 69 DLYIKNGQGFILVYS 83
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK + +G GKT + + T +Y PT + +D + + LWDT+G
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGNTVNLGLWDTAG 63
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+ + P R I F+
Sbjct: 64 QEDYNRLRPLSYRGADVFILAFS 86
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
+WDT+G +F S+ P + R + V++
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYD 104
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 87
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVS 113
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + + EY PT + +D + LWDT+G
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 70
Query: 63 DHKFESVWPAF--QRDVHGIIF 82
++ + P Q DV I F
Sbjct: 71 QEDYDRLRPLSYPQTDVFLICF 92
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y T GV + H T++ I+ +W
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVW 64
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G KF + + I +F+
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFD 91
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D+ + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDSKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++ LG AGKT L + L D + HPT S L + +D
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----------SEELTIAGMTFTTFDL 67
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G + VW + ++GI+F+ + + E D +T + N L++ N
Sbjct: 68 GGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 125
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 30 EYHPTQGVRIVECEHSY----ALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
+Y PT E SY ++D +++ DT+G +F ++ + R HG + VF
Sbjct: 37 DYDPT-------IEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFA 89
Query: 86 SGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
+E+ + + D ++ +L+ N
Sbjct: 90 INDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 61
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVS 87
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK + +G GKT L + T +Y PT + ++ + + LWDT+G
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV---FDNFSANVVVNGATVNLGLWDTAG 65
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+ + P R I F+
Sbjct: 66 QEDYNRLRPLSYRGADVFILAFS 88
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 87
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVS 113
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 29 EEYHPTQGVRIVECEHSY----ALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF 84
+EY PT E SY +D +++ DT+G ++ ++ + R G + VF
Sbjct: 48 DEYDPT-------IEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 100
Query: 85 NSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV--KPGRGDSSGHAHSLRR 135
+++ L+ + D ++ +L+ N P R + AH L +
Sbjct: 101 AINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK 153
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 61
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVS 87
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWD 59
+++ILILG AGKT + L L E PT G + + + ++WD
Sbjct: 2 EMRILILGLDGAGKTTI---LYRLQVGEVVTTIPTIGFNVETVTYK------NLKFQVWD 52
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNS 86
G W + + +I+V +S
Sbjct: 53 LGGQTSIRPYWRCYYSNTDAVIYVVDS 79
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++ LG AGKT L + L D + HPT S L + +D
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----------SEELTIAGMTFTTFDL 73
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G + VW + ++GI+F+ + + E D +T + N L++ N
Sbjct: 74 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 131
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y T GV + H T++ I+ +W
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVW 64
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G KF + + I +F+
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFD 91
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y T GV + H T++ I+ +W
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVW 69
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G KF + + I +F+
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFD 96
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y T GV + H T++ I+ +W
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVW 64
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G KF + + I +F+
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFD 91
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y T GV + H T++ I+ +W
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVW 57
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G KF + + I +F+
Sbjct: 58 DTAGQEKFGGLRDGYYIQAQCAIIMFD 84
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 79
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 80 QEDYDRLRPLSYPQTDVFLICFSLVS 105
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAE 29
I ++GP AGKT LA AL D E
Sbjct: 8 IFLMGPTAAGKTDLAMALADALPCE 32
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 64
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 65 QEDYDRLRPLSYPQTDVSLICFSLVS 90
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 62
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVS 88
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVSLICFSLVS 86
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVSLICFSLVS 86
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y T GV + H T++ I+ +W
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVW 64
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G KF + + I +F+
Sbjct: 65 DTAGQEKFGGLEDGYYIQAQCAIIMFD 91
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
K++ LG AGKT L + L D + HPT S L + +D
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----------SEELTIAGMTFTTFDL 76
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118
G + VW + ++GI+F+ + + E D +T + N L++ N
Sbjct: 77 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 134
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y T GV + H T++ I+ +W
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVW 64
Query: 59 DTSGDHKF 66
DT+G KF
Sbjct: 65 DTAGQEKF 72
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEI--ELWDT 60
K++++G GKT ++Y T GV + H + T+ EI ++WDT
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEV----HPLSFYTNFGEIKFDVWDT 61
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G KF + + + I +F+
Sbjct: 62 AGLEKFGGLRDGYYINAQCAIIMFD 86
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 87
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 88 LEDYDRLRPLSYPQTDVFLICFSLVS 113
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 4 KILILGPIMAGKTVLANALCD--LTTAEEYHPTQGVRIVEC-EHSYA-----LDTSKTEI 55
+I ++GP AGK+ L N L L T+ E + + RI +H++A LD + +E
Sbjct: 695 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEY 754
Query: 56 ELW 58
W
Sbjct: 755 IQW 757
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 4 KILILGPIMAGKTVLANALCD--LTTAEEYHPTQGVRIVEC-EHSYA-----LDTSKTEI 55
+I ++GP AGK+ L N L L T+ E + + RI +H++A LD + +E
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 56 ELW 58
W
Sbjct: 761 IQW 763
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 4 KILILGPIMAGKTVLANALCD--LTTAEEYHPTQGVRIVEC-EHSYA-----LDTSKTEI 55
+I ++GP AGK+ L N L L T+ E + + RI +H++A LD + +E
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 56 ELW 58
W
Sbjct: 761 IQW 763
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWD 59
+++ILILG AGKT + L L E PT G + + + ++WD
Sbjct: 4 EMRILILGLDGAGKTTI---LYRLQVGEVVTTIPTIGFNVETVTYK------NLKFQVWD 54
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNS 86
G W + + +I+V +S
Sbjct: 55 LGGLTSIRPYWRCYYSNTDAVIYVVDS 81
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 2 KIKILILGPIMAGKTVLANALCDL 25
K IL++GP +GKT+LA L L
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARL 74
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEI--ELWDT 60
K++++G GKT ++Y T GV + H + T+ EI ++WDT
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEV----HPLSFYTNFGEIKFDVWDT 60
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G KF + + + I +F+
Sbjct: 61 AGLEKFGGLRDGYYINAQCAIIMFD 85
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 2 KIKILILGPIMAGKTVLANALCDL 25
K IL++GP +GKT+LA L L
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARL 74
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 212
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNSGVPGH 91
++ + P Q DV I F S H
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 212
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNSGVPGH 91
++ + P Q DV I F S H
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 212
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNSGVPGH 91
++ + P Q DV I F S H
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIE--LW 58
++ K++++G GKT ++Y T GV + H T++ I+ +W
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVW 64
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFN 85
DT+G K+ + + I +F+
Sbjct: 65 DTAGQEKYGGLRDGYYIQAQCAIIMFD 91
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
KI++L+LG AGKT + L + L E+WD
Sbjct: 22 KIRVLMLGLDNAGKTSILYRL-------HLGDVVTTVPTVGVNLETLQYKNISFEVWDLG 74
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNS 86
G W + D +I+V +S
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDS 99
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 63
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 64 LEDYDRLRPLSYPQTDVFLICFSLVS 89
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK + +G GKT + +Y PT + A+D + LWDT+G
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVAVDGQIVNLGLWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+ + P R + F+
Sbjct: 67 QEDYSRLRPLSYRGADIFVLAFS 89
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYH--PTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ILILG AGKT + L L E PT G + + + ++WD
Sbjct: 9 RILILGLDGAGKTTI---LYRLQVGEVVTTIPTIGFNVETVTYK------NLKFQVWDLG 59
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNS 86
G W + + +I+V +S
Sbjct: 60 GLTSIRPYWRCYYSNTDAVIYVVDS 84
>pdb|2VM9|A Chain A, Native Structure Of The Recombinant Discoidin Ii Of
Dictyostelium Discoideum At 1.75 Angstrom
pdb|2VMC|A Chain A, Structure Of The Complex Of Discoidin Ii From
Dictyostelium Discoideum With N-Acetyl-Galactosamine
pdb|2VMD|A Chain A, Structure Of The Complex Of Discoidin Ii From
Dictyostelium Discoideum With Beta-Methyl-Galactose
Length = 257
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 16 TVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTE-IELWDTS 61
+ LANAL +L ++ +Y+ GV+ S + D S+ + E W +S
Sbjct: 9 SCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSS 55
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 62
Query: 63 DHKFESVWP 71
++ + P
Sbjct: 63 QEDYDRLRP 71
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GK L + EY PT + +D + LWDT+G
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 67
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 68 QEDYDRLRPLSYPQTDVFLICFSLVS 93
>pdb|2VME|A Chain A, Structure Of The Wild-Type Discoidin Ii From
Dictyostelium Discoideum
pdb|2VME|B Chain B, Structure Of The Wild-Type Discoidin Ii From
Dictyostelium Discoideum
pdb|2VME|C Chain C, Structure Of The Wild-Type Discoidin Ii From
Dictyostelium Discoideum
pdb|2VME|D Chain D, Structure Of The Wild-Type Discoidin Ii From
Dictyostelium Discoideum
pdb|2VME|E Chain E, Structure Of The Wild-Type Discoidin Ii From
Dictyostelium Discoideum
pdb|2VME|F Chain F, Structure Of The Wild-Type Discoidin Ii From
Dictyostelium Discoideum
Length = 257
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 16 TVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTE-IELWDTS 61
+ LANAL +L ++ +Y+ GV+ S + D S+ + E W +S
Sbjct: 9 SCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSS 55
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 LEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IK +++G GKT L + EY PT + +D + LWDT+G
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPVNLGLWDTAG 60
Query: 63 DHKFESVWPAF--QRDVHGIIFVFNS 86
++ + P Q DV I F S
Sbjct: 61 LEDYDRLRPLSYPQTDVFLICFSLVS 86
>pdb|1FLC|A Chain A, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|C Chain C, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|E Chain E, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
Length = 432
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 100 DYFVTQSDLNNHKCLLIDNVKPGRGDSSGH 129
DY V Q+ L+ C+LI KP G++ H
Sbjct: 325 DYAVDQACLSTPGCMLIQKQKPYIGEADDH 354
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEI--ELWDT 60
K++++G GKT ++Y T GV + H + T+ EI ++WDT
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEV----HPLSFYTNFGEIKFDVWDT 68
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G KF + + + I +F+
Sbjct: 69 AGLEKFGGLRDGYYINAQCAIIMFD 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,202,970
Number of Sequences: 62578
Number of extensions: 159680
Number of successful extensions: 747
Number of sequences better than 100.0: 305
Number of HSP's better than 100.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 307
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)