BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10117
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R4K5|RABL5_MACFA Rab-like protein 5 OS=Macaca fascicularis GN=RABL5 PE=2 SV=1
Length = 185
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
+K KIL +GP +GKTVLAN L + + EY PTQGVRI+E E+ + +K E EL
Sbjct: 2 LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
WD GD KFES WPA +D HG++ VFN+ +P H E+ ++Y FV Q L + +C+LI
Sbjct: 62 WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQQSLQDTQCMLIA 121
Query: 118 NVKPGRGDSSG 128
+ KPG GD G
Sbjct: 122 HHKPGSGDDKG 132
>sp|Q9H7X7|RABL5_HUMAN Rab-like protein 5 OS=Homo sapiens GN=RABL5 PE=2 SV=1
Length = 185
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 3/131 (2%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
+K KIL +GP +GKTVLAN L + + EY PTQGVRI+E E+ + +K E EL
Sbjct: 2 LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
WD GD KFES WPA +D HG++ VFN+ +P H E+ ++Y FV Q L + +C+LI
Sbjct: 62 WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIA 121
Query: 118 NVKPGRGDSSG 128
+ KPG GD G
Sbjct: 122 HHKPGSGDDKG 132
>sp|Q5E9J4|RABL5_BOVIN Rab-like protein 5 OS=Bos taurus GN=RABL5 PE=2 SV=1
Length = 185
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 83/127 (65%), Gaps = 3/127 (2%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
+K KIL +GP +GKTVLAN L + + EY+PTQGVRI+E E+ + +K E EL
Sbjct: 2 LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
WD GD KFES WPA +D HG++ VFN+ +P H+ E+ +Y FV Q L N +CLLI
Sbjct: 62 WDCGGDPKFESCWPALMKDSHGVVIVFNADIPSHLKEIETWYSCFVQQQFLQNTQCLLIA 121
Query: 118 NVKPGRG 124
+ KPG G
Sbjct: 122 HHKPGSG 128
>sp|Q9DAI2|RABL5_MOUSE Rab-like protein 5 OS=Mus musculus GN=Rabl5 PE=2 SV=1
Length = 185
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 84/131 (64%), Gaps = 3/131 (2%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
+K KIL +GP +GKTVLAN L + + EY+PTQGVRI+E E+ + +K E EL
Sbjct: 2 LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
WD GD KFES WPA +D HG++ VFN+ +P H+ E+ ++Y FV Q L + C+L+
Sbjct: 62 WDCGGDSKFESCWPALMKDAHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQDSHCMLVA 121
Query: 118 NVKPGRGDSSG 128
+ KPG G G
Sbjct: 122 HHKPGSGGERG 132
>sp|Q5FVJ7|RABL5_RAT Rab-like protein 5 OS=Rattus norvegicus GN=Rabl5 PE=2 SV=1
Length = 185
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 3/127 (2%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIEL 57
+K KIL +GP +GKTVLAN L + + EY+PTQGVRI+E E+ + +K E EL
Sbjct: 2 LKAKILFVGPCESGKTVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTGCEFEL 61
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLID 117
WD GD KFES WPA +D HG++ VFN+ +P H+ E+ ++Y FV Q L + C+L+
Sbjct: 62 WDCGGDSKFESCWPALMKDAHGVVIVFNADIPSHLKEIEMWYSCFVQQQFLQDSHCMLVA 121
Query: 118 NVKPGRG 124
+ KPG G
Sbjct: 122 HHKPGSG 128
>sp|Q5M8K8|RABL5_XENTR Rab-like protein 5 OS=Xenopus tropicalis GN=rabl5 PE=2 SV=1
Length = 184
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTT--AEEYHPTQGVRIVECEHSYALDTSKTEIELWD 59
K K+L++GP +GKT+LAN + D T EY+PTQGVRI+E E S E+ELWD
Sbjct: 3 KAKVLVVGPTESGKTILANFISDATETIGGEYNPTQGVRILEFECPNGNKGSSCEVELWD 62
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV 119
GD KFES WP +D HG+I VF++ +P H+ E+ +++ F+ + L ++CLLI +
Sbjct: 63 CGGDSKFESCWPVIMKDSHGVIIVFSADIPSHLKEIEMWHLNFIQKQRLQENRCLLIAHK 122
Query: 120 KPGRGD 125
KPG GD
Sbjct: 123 KPGSGD 128
>sp|Q567Y6|RABL5_DANRE Rab-like protein 5 OS=Danio rerio GN=rabl5 PE=2 SV=1
Length = 187
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 7/129 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYAL----DTSKTEI 55
K+KIL++GP GKT LAN L D T + +Y PTQGVRI+E E S+ L +S ++
Sbjct: 3 KVKILLIGPSECGKTALANFLSDTTESIGADYSPTQGVRILEFE-SHNLHNGNKSSSCDV 61
Query: 56 ELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLL 115
ELWD +GD KFES WPA +D +G+ VFN VP H+ E+ +Y F++ L +CLL
Sbjct: 62 ELWDCAGDFKFESCWPALMKDSNGVAVVFNPDVPSHLKEIETWYSAFISSQGLLEGQCLL 121
Query: 116 IDNVKPGRG 124
I + KPG G
Sbjct: 122 IAHHKPGSG 130
>sp|Q39573|YPTC5_CHLRE GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5
PE=3 SV=1
Length = 206
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N +EY T G + E +D K +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKE--IEVDDKKVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS---DLNNHKCLLIDNV 119
+F+S+ AF R + VF+ +L + D F+ Q+ D +N +++ N
Sbjct: 67 QERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNK 126
Query: 120 KPGRGDSS 127
G SS
Sbjct: 127 IDENGGSS 134
>sp|P36864|YPTV5_VOLCA GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1
Length = 205
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+KI+ILG GKT L N +EY T G + E +D K +++WDT+G
Sbjct: 9 LKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKE--IEVDDKKVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQ---SDLNNHKCLLIDN 118
+F+S+ AF R + VF+ +L + D F+ Q SD +N +++ N
Sbjct: 67 QERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFVVLGN 125
>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C
PE=2 SV=1
Length = 201
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
M +KIL++G GK+ + D + Y T GV C + LD K ++++WDT
Sbjct: 32 MLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDF--CIRTIELDGKKIKLQIWDT 89
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFN 85
+G +F+++ ++ R HG+I V++
Sbjct: 90 AGQERFKTITTSYYRGAHGLIIVYD 114
>sp|Q5R9Y4|RAB7A_PONAB Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1
Length = 207
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>sp|P51150|RAB7A_MOUSE Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2
Length = 207
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>sp|P51149|RAB7A_HUMAN Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1
Length = 207
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>sp|Q3T0F5|RAB7A_BOVIN Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1
Length = 207
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>sp|P18067|RAB7A_CANFA Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1
Length = 207
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>sp|P09527|RAB7A_RAT Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2
Length = 207
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + +Y T G + E +D +++WDT+G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--VMVDDRLVTMQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS 106
+F+S+ AF R + VF+ P L + D F+ Q+
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA 110
>sp|P91580|RAB33_CIOIN Putative Ras-related protein Rab-33 OS=Ciona intestinalis
GN=COS41.2 PE=3 SV=1
Length = 218
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
KI+++G GKT L C E+ T GV E + +D + +++LWDT+G
Sbjct: 16 FKIIVIGDSDVGKTCLTYRFCTGKFPEKTEATIGVDFRE--RTLDIDGEQIKLQLWDTAG 73
Query: 63 DHKF-ESVWPAFQRDVHGIIFVFN-------SGVPGHISE 94
+F +S+ P + R+VH ++F ++ G+P I E
Sbjct: 74 QERFRKSMVPHYYRNVHAVVFTYDVTKGRSFQGLPSWIEE 113
>sp|Q6DUB4|RAB7B_PAROT Ras-related protein Rab-7b OS=Paramecium octaurelia GN=Rab7b PE=1
SV=1
Length = 206
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
KI+ILG GKT L N + ++Y T G + E +D +++WDT+G
Sbjct: 9 FKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAKE--VMIDDRMVTLQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQ 105
+F+S+ AF R + V++ P L + D F+ Q
Sbjct: 67 QERFQSLGGAFYRGADCCVLVYDITNPKSFDSLDSWRDEFLMQ 109
>sp|Q95UJ0|RAB7A_PAROT Ras-related protein Rab-7a OS=Paramecium octaurelia GN=Rab7a PE=1
SV=2
Length = 206
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
KI+ILG GKT L N + ++Y T G + E +D +++WDT+G
Sbjct: 9 FKIIILGDSGVGKTSLMNQYVNARFTQQYRATVGADFMAKE--VMIDDRMVTLQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQ 105
+F+S+ AF R + V++ P L + D F+ Q
Sbjct: 67 QERFQSLGGAFYRGADCCVLVYDITNPKSFDSLDSWRDEFLMQ 109
>sp|Q5U1Y1|RAB34_RAT Ras-related protein Rab-34 OS=Rattus norvegicus GN=Rab34 PE=2 SV=1
Length = 259
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G + GKT L N C T + Y T GV E E L + ++LWDT+G
Sbjct: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF-EMERFEVLGVPFS-LQLWDTAGQ 111
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F+ + + R II VFN
Sbjct: 112 ERFKCIASTYYRGAQAIIIVFN 133
>sp|Q06AU4|RAB34_PIG Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 PE=2 SV=1
Length = 259
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G + GKT L N C T + Y T GV E E L + ++LWDT+G
Sbjct: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF-EMERFEVLGVPFS-LQLWDTAGQ 111
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F+ + + R II VFN
Sbjct: 112 ERFKCIASTYYRGAQAIIIVFN 133
>sp|Q64008|RAB34_MOUSE Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2
Length = 259
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G + GKT L N C T + Y T GV E E L + ++LWDT+G
Sbjct: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF-EMERFEVLGVPFS-LQLWDTAGQ 111
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F+ + + R II VFN
Sbjct: 112 ERFKCIASTYYRGAQAIIIVFN 133
>sp|Q9BZG1|RAB34_HUMAN Ras-related protein Rab-34 OS=Homo sapiens GN=RAB34 PE=1 SV=1
Length = 259
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K++++G + GKT L N C T + Y T GV E E L + ++LWDT+G
Sbjct: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF-EMERFEVLGIPFS-LQLWDTAGQ 111
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F+ + + R II VFN
Sbjct: 112 ERFKCIASTYYRGAQAIIIVFN 133
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1
SV=1
Length = 201
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F +V ++ R HGII V++
Sbjct: 64 TAGQERFRTVTSSYYRGAHGIIVVYD 89
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 66
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF---NSGVPGHISELLLFYDYFVTQSDLNNHKCLLI 116
T+G +F ++ ++ R HGII V+ + G ++ + L D + ++ N LL+
Sbjct: 67 TAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASE----NVNKLLV 122
Query: 117 DN 118
N
Sbjct: 123 GN 124
>sp|Q4UB16|RAB1_THEAN Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1
Length = 220
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
KI+++G GK+ L D T +E Y T GV + +D + ++++WDT+G
Sbjct: 9 KIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKI--KTVKIDNTTIKLQIWDTAGQ 66
Query: 64 HKFESVWPAFQRDVHGIIFVF---NSGVPGHISELLL 97
+F ++ + R HGII V+ N HI+E L
Sbjct: 67 ERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWL 103
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1
SV=3
Length = 205
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 66
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 67 TAGQERFRTITSSYYRGAHGIIVVYD 92
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 66
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 67 TAGQERFRTITSSYYRGAHGIIVVYD 92
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 66
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 67 TAGQERFRTITSSYYRGAHGIIVVYD 92
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 66
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 67 TAGQERFRTITSSYYRGAHGIIVVYD 92
>sp|Q9HDY0|YPT71_SCHPO GTP-binding protein ypt71 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ypt71 PE=3 SV=1
Length = 208
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K++ILG GKT L N + + EY T G + +D ++LWDT+G
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLT--KDVVVDDKLVTLQLWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F+S+ AF R + V+N
Sbjct: 67 QERFQSLGMAFYRGADCCVIVYN 89
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>sp|Q9TVU5|RAB1_THEPA Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1
Length = 220
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
KI+++G GK+ L D T +E Y T GV + +D + ++++WDT+G
Sbjct: 9 KIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKI--KTVKIDNTTIKLQIWDTAGQ 66
Query: 64 HKFESVWPAFQRDVHGIIFVF---NSGVPGHISELLL 97
+F ++ + R HGII V+ N HI+E L
Sbjct: 67 ERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWL 103
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K+L++G GK+ L D T E Y T GV ++ L+ ++++WDT+G
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI--RTFELEGKTVKLQIWDTAGQ 67
Query: 64 HKFESVWPAFQRDVHGIIFVFN 85
+F ++ ++ R HGII V++
Sbjct: 68 ERFRTITSSYYRGAHGIIIVYD 89
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans
GN=YPT1 PE=3 SV=1
Length = 201
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2
SV=1
Length = 205
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 66
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 67 TAGQERFRTITSSYYRGAHGIIVVYD 92
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R VE LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVE------LDGKVIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R +E LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>sp|P35284|RAB12_RAT Ras-related protein Rab-12 OS=Rattus norvegicus GN=Rab12 PE=1 SV=2
Length = 243
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWD 59
K++++I+G GKT L D T E T GV +I E L K +++WD
Sbjct: 41 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE----LRGKKIRLQIWD 96
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F S+ A+ R GII V++
Sbjct: 97 TAGQERFNSITSAYYRSAKGIILVYD 122
>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1
Length = 205
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+KILI+G GK+ L D T E T GV + A+D ++ ++ +WDT+G
Sbjct: 9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKV--KTIAIDGNRAKLAIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFN 85
+F ++ P++ R G+I V++
Sbjct: 67 QERFRTLTPSYYRGAQGVILVYD 89
>sp|P35283|RAB12_MOUSE Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3
Length = 243
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV--RIVECEHSYALDTSKTEIELWD 59
K++++I+G GKT L D T E T GV +I E L K +++WD
Sbjct: 41 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE----LRGKKIRLQIWD 96
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F S+ A+ R GII V++
Sbjct: 97 TAGQERFNSITSAYYRSAKGIILVYD 122
>sp|Q6IQ22|RAB12_HUMAN Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=1 SV=3
Length = 244
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K++++I+G GKT L D T E T GV + L K +++WDT+
Sbjct: 42 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKI--KTVELRGKKIRLQIWDTA 99
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ A+ R GII V++
Sbjct: 100 GQERFNSITSAYYRSAKGIILVYD 123
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+L++G GK+ L D T E Y T GV R VE LD ++++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVE------LDGKVIKLQIWD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFN 85
T+G +F ++ ++ R HGII V++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYD 89
>sp|P51152|RAB12_CANFA Ras-related protein Rab-12 (Fragment) OS=Canis familiaris
GN=RAB12 PE=2 SV=1
Length = 208
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
K++++I+G GKT L D T E T GV + L K +++WDT+
Sbjct: 6 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKI--KTVELRGKKIRLQIWDTA 63
Query: 62 GDHKFESVWPAFQRDVHGIIFVFN 85
G +F S+ A+ R GII V++
Sbjct: 64 GQERFNSITSAYYRSAKGIILVYD 87
>sp|Q43463|RAB7_SOYBN Ras-related protein Rab7 OS=Glycine max PE=2 SV=1
Length = 206
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
+K+++LG GKT L N +++Y T G V E +D +++WDT+G
Sbjct: 9 LKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKE--LQIDDRLVTLQIWDTAG 66
Query: 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD 107
+F+S+ AF R + V++ V L +++ F+ Q++
Sbjct: 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQAN 111
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
K+L++G GK+ L D T E Y T GV + LD ++++WDT+G
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI--RTINLDGKIIKLQIWDTAGQ 67
Query: 64 HKFESVWPAFQRDVHGIIFVFNSGVPGHIS 93
+F ++ ++ R HGII V++ V H+S
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYD--VTDHVS 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,518,287
Number of Sequences: 539616
Number of extensions: 1937437
Number of successful extensions: 9575
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 416
Number of HSP's that attempted gapping in prelim test: 8798
Number of HSP's gapped (non-prelim): 967
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)