Query psy10117
Match_columns 135
No_of_seqs 142 out of 1213
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 18:21:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.4E-39 3.1E-44 204.4 11.3 117 2-121 9-125 (205)
2 KOG0094|consensus 100.0 4.5E-36 9.8E-41 188.4 11.1 118 2-121 22-139 (221)
3 KOG0080|consensus 100.0 2.7E-35 5.8E-40 179.8 9.6 126 2-129 11-139 (209)
4 KOG0092|consensus 100.0 9.5E-35 2.1E-39 182.1 11.2 117 2-121 5-121 (200)
5 KOG0078|consensus 100.0 3.4E-34 7.3E-39 182.3 11.3 128 2-132 12-142 (207)
6 KOG0098|consensus 100.0 4E-34 8.6E-39 178.4 11.0 128 2-132 6-136 (216)
7 KOG0087|consensus 100.0 7.6E-34 1.6E-38 180.3 10.8 117 2-121 14-130 (222)
8 cd04120 Rab12 Rab12 subfamily. 100.0 5.4E-32 1.2E-36 176.5 14.2 117 3-122 1-117 (202)
9 cd04133 Rop_like Rop subfamily 100.0 5.9E-32 1.3E-36 173.0 14.1 115 3-122 2-117 (176)
10 cd04102 RabL3 RabL3 (Rab-like3 100.0 9.5E-32 2.1E-36 175.1 14.5 120 3-122 1-141 (202)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.5E-32 1.8E-36 173.2 13.6 118 1-123 4-122 (182)
12 cd04131 Rnd Rnd subfamily. Th 100.0 8.7E-32 1.9E-36 172.7 13.6 116 2-122 1-117 (178)
13 KOG0095|consensus 100.0 4.6E-32 1E-36 164.1 11.2 117 2-121 7-123 (213)
14 KOG0093|consensus 100.0 4.2E-32 9.1E-37 163.7 10.8 118 2-122 21-138 (193)
15 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-31 3.7E-36 172.6 14.4 117 2-122 6-122 (189)
16 KOG0079|consensus 100.0 7.6E-33 1.7E-37 167.1 7.5 116 3-122 9-124 (198)
17 cd01875 RhoG RhoG subfamily. 100.0 2E-31 4.2E-36 172.8 13.7 116 2-122 3-119 (191)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.6E-31 7.8E-36 175.4 14.2 118 1-123 12-130 (232)
19 KOG0394|consensus 100.0 5.6E-32 1.2E-36 168.5 8.6 118 3-122 10-130 (210)
20 cd04122 Rab14 Rab14 subfamily. 100.0 1.4E-30 2.9E-35 165.3 14.5 118 2-122 2-119 (166)
21 cd04127 Rab27A Rab27a subfamil 100.0 1.3E-30 2.8E-35 167.3 14.4 121 2-122 4-132 (180)
22 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.7E-30 3.7E-35 169.7 14.6 119 3-122 1-122 (201)
23 cd04136 Rap_like Rap-like subf 100.0 1.5E-30 3.3E-35 164.3 13.9 118 2-122 1-118 (163)
24 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.5E-30 3.2E-35 166.7 13.8 115 3-122 2-117 (175)
25 cd04175 Rap1 Rap1 subgroup. T 100.0 1.9E-30 4.1E-35 164.3 14.0 118 2-122 1-118 (164)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.7E-30 3.8E-35 165.9 13.8 118 2-122 2-119 (172)
27 PLN00023 GTP-binding protein; 100.0 1.8E-30 3.9E-35 177.2 14.6 121 2-122 21-163 (334)
28 PLN03071 GTP-binding nuclear p 100.0 2E-30 4.4E-35 171.2 14.4 117 2-122 13-129 (219)
29 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.7E-30 3.7E-35 171.3 13.7 117 2-123 1-118 (222)
30 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.9E-30 6.2E-35 164.6 14.1 117 4-122 2-118 (170)
31 KOG0086|consensus 100.0 3.1E-31 6.6E-36 161.1 9.1 118 2-122 9-126 (214)
32 cd04176 Rap2 Rap2 subgroup. T 100.0 4E-30 8.8E-35 162.6 14.2 118 2-122 1-118 (163)
33 KOG0091|consensus 100.0 1.4E-31 3.1E-36 163.9 7.1 131 2-133 8-142 (213)
34 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.6E-30 9.9E-35 165.3 13.9 116 3-122 1-116 (182)
35 cd04117 Rab15 Rab15 subfamily. 100.0 6.4E-30 1.4E-34 161.7 14.3 117 3-122 1-117 (161)
36 cd04119 RJL RJL (RabJ-Like) su 100.0 5.6E-30 1.2E-34 162.2 13.8 118 3-122 1-122 (168)
37 PTZ00369 Ras-like protein; Pro 100.0 7.2E-30 1.6E-34 165.3 14.3 118 2-122 5-122 (189)
38 cd04106 Rab23_lke Rab23-like s 100.0 6.4E-30 1.4E-34 161.4 13.7 118 3-122 1-118 (162)
39 cd04111 Rab39 Rab39 subfamily. 100.0 8.3E-30 1.8E-34 167.5 14.7 120 2-122 2-121 (211)
40 cd04124 RabL2 RabL2 subfamily. 100.0 1E-29 2.2E-34 160.7 14.1 116 3-122 1-116 (161)
41 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.1E-29 2.3E-34 160.1 14.1 118 2-122 1-118 (162)
42 cd04109 Rab28 Rab28 subfamily. 100.0 8.7E-30 1.9E-34 167.9 14.3 119 3-122 1-121 (215)
43 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-29 2.4E-34 161.1 14.1 117 3-122 2-118 (165)
44 cd00877 Ran Ran (Ras-related n 100.0 1.2E-29 2.6E-34 161.2 14.2 117 3-123 1-117 (166)
45 PF00071 Ras: Ras family; Int 100.0 1.3E-29 2.8E-34 160.1 13.9 116 4-122 1-116 (162)
46 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.1E-29 4.6E-34 160.5 14.2 119 2-122 2-121 (170)
47 cd01867 Rab8_Rab10_Rab13_like 100.0 2.4E-29 5.3E-34 159.8 14.2 118 2-122 3-120 (167)
48 cd01871 Rac1_like Rac1-like su 100.0 1.9E-29 4E-34 161.4 13.7 115 3-122 2-117 (174)
49 cd04110 Rab35 Rab35 subfamily. 100.0 2.6E-29 5.7E-34 163.8 14.4 117 2-122 6-122 (199)
50 smart00177 ARF ARF-like small 100.0 1.7E-29 3.7E-34 161.7 12.9 114 2-122 13-126 (175)
51 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.8E-29 8.3E-34 158.6 14.3 118 2-122 2-119 (166)
52 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.7E-29 3.7E-34 159.4 12.6 114 3-123 1-114 (159)
53 cd04116 Rab9 Rab9 subfamily. 100.0 4E-29 8.7E-34 159.0 14.4 119 2-122 5-126 (170)
54 PLN00223 ADP-ribosylation fact 100.0 1.8E-29 3.8E-34 162.4 12.8 114 2-122 17-130 (181)
55 cd04149 Arf6 Arf6 subfamily. 100.0 2E-29 4.3E-34 160.5 12.6 114 2-122 9-122 (168)
56 cd04134 Rho3 Rho3 subfamily. 100.0 2.6E-29 5.6E-34 162.7 13.3 114 4-122 2-116 (189)
57 cd01864 Rab19 Rab19 subfamily. 100.0 5.8E-29 1.3E-33 157.7 14.1 118 2-122 3-120 (165)
58 cd01868 Rab11_like Rab11-like. 100.0 6.9E-29 1.5E-33 157.2 14.2 118 2-122 3-120 (165)
59 smart00173 RAS Ras subfamily o 100.0 5.7E-29 1.2E-33 157.4 13.5 117 3-122 1-117 (164)
60 cd04144 Ras2 Ras2 subfamily. 100.0 3.4E-29 7.3E-34 162.2 12.6 116 4-122 1-118 (190)
61 cd04113 Rab4 Rab4 subfamily. 100.0 8.3E-29 1.8E-33 156.3 13.8 117 3-122 1-117 (161)
62 smart00176 RAN Ran (Ras-relate 100.0 4.9E-29 1.1E-33 162.4 13.0 111 8-122 1-111 (200)
63 cd04101 RabL4 RabL4 (Rab-like4 100.0 8.5E-29 1.9E-33 156.6 13.7 117 3-122 1-119 (164)
64 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.2E-28 2.6E-33 155.8 14.3 118 2-122 2-119 (164)
65 PLN03110 Rab GTPase; Provision 100.0 1.1E-28 2.3E-33 162.8 14.5 118 2-122 12-129 (216)
66 cd01866 Rab2 Rab2 subfamily. 100.0 1.5E-28 3.2E-33 156.4 14.5 118 2-122 4-121 (168)
67 cd04125 RabA_like RabA-like su 100.0 1.4E-28 3E-33 159.1 14.2 117 3-122 1-117 (188)
68 cd04161 Arl2l1_Arl13_like Arl2 100.0 9.6E-29 2.1E-33 157.1 13.0 112 4-122 1-112 (167)
69 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1E-28 2.2E-33 156.6 13.0 111 4-122 1-111 (164)
70 cd04158 ARD1 ARD1 subfamily. 100.0 1.1E-28 2.5E-33 157.0 13.2 112 4-122 1-112 (169)
71 cd04126 Rab20 Rab20 subfamily. 100.0 1.6E-28 3.6E-33 161.8 14.2 112 3-122 1-112 (220)
72 cd01861 Rab6 Rab6 subfamily. 100.0 1.9E-28 4E-33 154.6 13.8 117 3-122 1-117 (161)
73 cd04140 ARHI_like ARHI subfami 100.0 2.3E-28 5E-33 155.0 14.2 118 2-122 1-120 (165)
74 PTZ00133 ADP-ribosylation fact 100.0 1.2E-28 2.5E-33 158.8 12.7 114 2-122 17-130 (182)
75 cd04118 Rab24 Rab24 subfamily. 100.0 2.5E-28 5.4E-33 158.4 14.2 116 3-122 1-117 (193)
76 cd04132 Rho4_like Rho4-like su 100.0 2.1E-28 4.6E-33 158.0 13.3 116 3-122 1-117 (187)
77 cd01860 Rab5_related Rab5-rela 100.0 4.6E-28 9.9E-33 153.1 14.3 119 2-123 1-119 (163)
78 cd04103 Centaurin_gamma Centau 100.0 2.9E-28 6.2E-33 153.7 13.2 111 3-122 1-111 (158)
79 cd01863 Rab18 Rab18 subfamily. 100.0 5.5E-28 1.2E-32 152.5 14.4 118 3-122 1-118 (161)
80 smart00175 RAB Rab subfamily o 100.0 4.3E-28 9.4E-33 153.2 13.7 117 3-122 1-117 (164)
81 cd04112 Rab26 Rab26 subfamily. 100.0 5.6E-28 1.2E-32 156.6 13.8 117 3-122 1-118 (191)
82 smart00174 RHO Rho (Ras homolo 100.0 4E-28 8.7E-33 154.9 12.8 113 5-122 1-114 (174)
83 cd04177 RSR1 RSR1 subgroup. R 100.0 7.7E-28 1.7E-32 153.0 13.9 118 2-122 1-118 (168)
84 KOG0081|consensus 100.0 8.7E-31 1.9E-35 160.0 0.2 119 3-121 10-135 (219)
85 cd04143 Rhes_like Rhes_like su 100.0 5.7E-28 1.2E-32 161.9 13.4 117 3-122 1-125 (247)
86 cd04130 Wrch_1 Wrch-1 subfamil 100.0 6.2E-28 1.3E-32 154.1 12.8 115 3-122 1-116 (173)
87 cd01892 Miro2 Miro2 subfamily. 100.0 1.2E-27 2.7E-32 152.3 13.9 115 3-122 5-120 (169)
88 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.1E-27 2.3E-32 154.4 13.6 119 2-122 3-121 (183)
89 cd04154 Arl2 Arl2 subfamily. 100.0 1.1E-27 2.5E-32 152.9 12.9 114 2-122 14-127 (173)
90 cd01862 Rab7 Rab7 subfamily. 100.0 2.3E-27 5E-32 150.9 14.2 118 3-122 1-121 (172)
91 cd04157 Arl6 Arl6 subfamily. 100.0 1.2E-27 2.7E-32 150.9 12.7 113 4-122 1-116 (162)
92 PLN03108 Rab family protein; P 100.0 2.4E-27 5.3E-32 155.7 14.5 118 2-122 6-123 (210)
93 KOG0088|consensus 100.0 2.9E-29 6.2E-34 153.3 4.6 118 1-121 12-129 (218)
94 cd04142 RRP22 RRP22 subfamily. 100.0 3E-27 6.5E-32 153.9 13.9 118 3-122 1-128 (198)
95 cd04146 RERG_RasL11_like RERG/ 100.0 1.8E-27 4E-32 150.8 12.5 116 4-122 1-118 (165)
96 PF00025 Arf: ADP-ribosylation 100.0 1.4E-27 3E-32 152.9 12.0 114 2-122 14-127 (175)
97 cd04123 Rab21 Rab21 subfamily. 100.0 4.8E-27 1E-31 147.9 14.0 118 3-123 1-118 (162)
98 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.5E-27 7.6E-32 150.9 13.0 114 2-122 15-128 (174)
99 PLN03118 Rab family protein; P 100.0 7E-27 1.5E-31 153.6 14.7 118 2-122 14-132 (211)
100 cd01870 RhoA_like RhoA-like su 100.0 4.7E-27 1E-31 150.1 13.0 116 2-122 1-117 (175)
101 cd04135 Tc10 TC10 subfamily. 100.0 5.6E-27 1.2E-31 149.6 13.2 115 3-122 1-116 (174)
102 cd04156 ARLTS1 ARLTS1 subfamil 99.9 6.4E-27 1.4E-31 147.4 12.4 113 4-122 1-113 (160)
103 cd04148 RGK RGK subfamily. Th 99.9 1.2E-26 2.6E-31 153.5 13.7 116 3-122 1-118 (221)
104 cd01873 RhoBTB RhoBTB subfamil 99.9 1.3E-26 2.7E-31 150.6 13.4 118 2-123 2-133 (195)
105 PTZ00132 GTP-binding nuclear p 99.9 1.9E-26 4.1E-31 152.0 14.4 117 2-122 9-125 (215)
106 KOG0070|consensus 99.9 1.4E-27 3.1E-32 149.2 8.5 114 2-122 17-130 (181)
107 cd01893 Miro1 Miro1 subfamily. 99.9 1.7E-26 3.7E-31 146.6 13.1 114 3-122 1-115 (166)
108 cd04114 Rab30 Rab30 subfamily. 99.9 3.3E-26 7.2E-31 145.4 14.4 118 2-122 7-124 (169)
109 cd04139 RalA_RalB RalA/RalB su 99.9 2.2E-26 4.9E-31 145.2 13.3 117 3-122 1-117 (164)
110 KOG0395|consensus 99.9 3.9E-27 8.4E-32 152.6 10.0 125 2-129 3-130 (196)
111 KOG0073|consensus 99.9 8.9E-27 1.9E-31 142.8 10.9 114 2-122 16-129 (185)
112 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.1E-26 4.5E-31 144.9 12.9 112 4-122 1-112 (158)
113 smart00178 SAR Sar1p-like memb 99.9 1.7E-26 3.7E-31 148.9 12.7 114 2-122 17-130 (184)
114 KOG0083|consensus 99.9 4.1E-29 8.9E-34 148.8 0.3 125 6-133 1-129 (192)
115 cd04147 Ras_dva Ras-dva subfam 99.9 1.9E-26 4E-31 150.3 12.7 116 4-122 1-116 (198)
116 PF08477 Miro: Miro-like prote 99.9 3.1E-26 6.7E-31 138.0 12.8 114 4-121 1-119 (119)
117 cd00154 Rab Rab family. Rab G 99.9 3.4E-26 7.5E-31 143.2 13.5 117 3-122 1-117 (159)
118 cd04151 Arl1 Arl1 subfamily. 99.9 2E-26 4.3E-31 145.1 12.4 113 4-123 1-113 (158)
119 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.2E-26 4.8E-31 145.9 12.2 113 4-122 1-119 (167)
120 cd04159 Arl10_like Arl10-like 99.9 4.3E-26 9.4E-31 142.8 12.7 113 4-122 1-113 (159)
121 cd04137 RheB Rheb (Ras Homolog 99.9 6E-26 1.3E-30 145.7 12.9 118 2-122 1-118 (180)
122 cd00157 Rho Rho (Ras homology) 99.9 8.2E-26 1.8E-30 143.7 13.2 115 3-122 1-116 (171)
123 cd00879 Sar1 Sar1 subfamily. 99.9 6.5E-26 1.4E-30 146.7 12.9 114 2-122 19-132 (190)
124 KOG0393|consensus 99.9 2.5E-27 5.4E-32 151.3 5.9 117 2-123 4-122 (198)
125 cd04129 Rho2 Rho2 subfamily. 99.9 1.2E-25 2.5E-30 145.3 13.6 116 2-122 1-117 (187)
126 cd00876 Ras Ras family. The R 99.9 1.4E-25 3E-30 141.0 12.7 116 4-122 1-116 (160)
127 KOG0071|consensus 99.9 1.6E-25 3.5E-30 134.2 9.4 126 2-134 17-149 (180)
128 KOG0097|consensus 99.9 1.3E-25 2.8E-30 135.2 8.6 117 3-122 12-128 (215)
129 KOG0075|consensus 99.9 5.9E-26 1.3E-30 137.1 6.5 114 2-121 20-133 (186)
130 KOG4252|consensus 99.9 4.8E-27 1E-31 146.3 1.5 127 2-132 20-149 (246)
131 COG1100 GTPase SAR1 and relate 99.9 1.8E-24 3.9E-29 142.7 13.2 117 3-122 6-123 (219)
132 cd04155 Arl3 Arl3 subfamily. 99.9 5.8E-24 1.3E-28 135.6 12.8 114 2-122 14-127 (173)
133 cd04105 SR_beta Signal recogni 99.9 4.7E-23 1E-27 134.7 11.8 116 4-122 2-121 (203)
134 KOG0074|consensus 99.9 2.3E-23 4.9E-28 125.3 9.3 114 2-121 17-130 (185)
135 TIGR00231 small_GTP small GTP- 99.9 6.5E-22 1.4E-26 123.4 13.5 118 2-122 1-120 (161)
136 cd01890 LepA LepA subfamily. 99.9 5.2E-22 1.1E-26 127.2 12.0 114 4-122 2-131 (179)
137 cd01898 Obg Obg subfamily. Th 99.9 1.5E-21 3.2E-26 124.0 12.2 114 4-122 2-126 (170)
138 cd01891 TypA_BipA TypA (tyrosi 99.9 2.1E-21 4.5E-26 126.2 11.4 112 4-122 4-129 (194)
139 cd04171 SelB SelB subfamily. 99.9 3.5E-21 7.5E-26 121.5 11.2 110 3-122 1-116 (164)
140 cd01897 NOG NOG1 is a nucleola 99.9 3.4E-20 7.4E-25 117.6 13.1 111 4-122 2-125 (168)
141 cd01878 HflX HflX subfamily. 99.9 1.8E-20 4E-25 122.5 12.1 113 3-122 42-165 (204)
142 cd00882 Ras_like_GTPase Ras-li 99.8 2.8E-20 6.1E-25 115.0 11.6 114 7-123 1-115 (157)
143 KOG1673|consensus 99.8 2.4E-21 5.2E-26 118.3 6.5 117 1-121 19-135 (205)
144 PTZ00099 rab6; Provisional 99.8 2.2E-20 4.9E-25 119.6 11.2 95 25-122 3-97 (176)
145 TIGR02528 EutP ethanolamine ut 99.8 5.1E-21 1.1E-25 118.5 7.4 94 4-122 2-100 (142)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.1E-20 6.6E-25 117.7 10.9 114 4-123 2-115 (168)
147 KOG0096|consensus 99.8 1.6E-20 3.4E-25 118.0 9.1 116 2-121 10-125 (216)
148 KOG3883|consensus 99.8 7.7E-20 1.7E-24 111.5 11.6 117 3-122 10-130 (198)
149 TIGR00450 mnmE_trmE_thdF tRNA 99.8 9.8E-20 2.1E-24 130.7 13.8 111 2-122 203-322 (442)
150 TIGR03156 GTP_HflX GTP-binding 99.8 6.5E-20 1.4E-24 128.4 12.4 113 3-122 190-313 (351)
151 KOG0076|consensus 99.8 7.6E-21 1.6E-25 117.9 5.3 115 2-122 17-138 (197)
152 cd01881 Obg_like The Obg-like 99.8 1.1E-19 2.3E-24 115.9 10.5 110 7-122 1-132 (176)
153 PRK04213 GTP-binding protein; 99.8 1.8E-20 4E-25 122.2 6.4 110 2-122 9-142 (201)
154 PRK03003 GTP-binding protein D 99.8 3.5E-19 7.5E-24 129.3 13.1 111 3-122 39-158 (472)
155 cd01879 FeoB Ferrous iron tran 99.8 2.5E-19 5.5E-24 112.4 10.8 105 7-122 1-113 (158)
156 PRK12299 obgE GTPase CgtA; Rev 99.8 5.4E-19 1.2E-23 123.0 12.6 115 3-122 159-283 (335)
157 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.6E-18 3.4E-23 108.4 13.0 109 3-122 2-119 (157)
158 PRK05291 trmE tRNA modificatio 99.8 6.7E-19 1.4E-23 126.9 12.5 109 3-122 216-333 (449)
159 KOG1707|consensus 99.8 3.4E-19 7.4E-24 128.0 10.7 118 2-123 9-128 (625)
160 TIGR01393 lepA GTP-binding pro 99.8 8.8E-19 1.9E-23 129.7 12.8 115 4-123 5-135 (595)
161 PRK15494 era GTPase Era; Provi 99.8 1.5E-18 3.3E-23 121.2 13.1 108 3-122 53-172 (339)
162 CHL00189 infB translation init 99.8 9.8E-19 2.1E-23 131.2 11.7 113 3-123 245-360 (742)
163 cd04167 Snu114p Snu114p subfam 99.8 3.4E-18 7.3E-23 112.6 12.5 114 4-122 2-135 (213)
164 KOG4423|consensus 99.8 3.8E-22 8.2E-27 125.0 -6.1 119 3-122 26-147 (229)
165 PRK11058 GTPase HflX; Provisio 99.8 3.3E-18 7.3E-23 122.3 12.9 114 3-122 198-321 (426)
166 cd00881 GTP_translation_factor 99.8 4.1E-18 8.8E-23 109.7 12.1 111 4-123 1-127 (189)
167 TIGR02729 Obg_CgtA Obg family 99.8 3.7E-18 8E-23 118.7 12.6 115 3-122 158-285 (329)
168 PRK00093 GTP-binding protein D 99.8 3.9E-18 8.4E-23 122.9 13.1 109 3-122 2-121 (435)
169 TIGR03598 GTPase_YsxC ribosome 99.8 4.1E-18 9E-23 109.4 11.7 111 2-122 18-141 (179)
170 PRK03003 GTP-binding protein D 99.8 3.4E-18 7.3E-23 124.2 12.6 111 3-122 212-334 (472)
171 PF09439 SRPRB: Signal recogni 99.8 5.8E-19 1.3E-23 112.4 7.4 114 4-122 5-124 (181)
172 cd01889 SelB_euk SelB subfamil 99.8 2.5E-18 5.5E-23 111.5 10.5 115 3-122 1-132 (192)
173 KOG0072|consensus 99.8 2.9E-19 6.2E-24 107.9 5.4 114 2-122 18-131 (182)
174 TIGR00487 IF-2 translation ini 99.8 4.1E-18 8.8E-23 125.9 12.3 113 3-123 88-200 (587)
175 TIGR00436 era GTP-binding prot 99.8 8.5E-18 1.8E-22 114.3 12.7 108 4-122 2-119 (270)
176 COG2229 Predicted GTPase [Gene 99.8 6.5E-18 1.4E-22 106.0 10.9 113 2-123 10-134 (187)
177 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.3E-17 2.7E-22 110.4 12.3 112 4-122 1-123 (232)
178 cd01894 EngA1 EngA1 subfamily. 99.8 9.1E-18 2E-22 105.0 10.8 108 6-123 1-118 (157)
179 cd04168 TetM_like Tet(M)-like 99.8 1.3E-17 2.9E-22 111.3 11.8 113 4-123 1-129 (237)
180 PRK05306 infB translation init 99.8 1E-17 2.2E-22 126.6 12.5 112 3-123 291-402 (787)
181 cd04169 RF3 RF3 subfamily. Pe 99.8 4E-18 8.7E-23 115.5 9.2 113 4-123 4-136 (267)
182 PRK12297 obgE GTPase CgtA; Rev 99.8 2.4E-17 5.2E-22 117.6 13.5 114 4-122 160-286 (424)
183 PRK00454 engB GTP-binding prot 99.8 1.3E-17 2.9E-22 108.2 11.3 111 2-122 24-147 (196)
184 KOG0077|consensus 99.8 2.5E-18 5.3E-23 106.1 6.9 110 4-123 22-134 (193)
185 TIGR00491 aIF-2 translation in 99.8 9.3E-18 2E-22 123.9 11.0 111 4-122 6-133 (590)
186 cd01885 EF2 EF2 (for archaea a 99.8 2.2E-17 4.8E-22 109.1 11.2 114 4-122 2-137 (222)
187 TIGR03594 GTPase_EngA ribosome 99.8 2.7E-17 5.9E-22 118.3 12.4 108 4-122 1-119 (429)
188 TIGR00475 selB selenocysteine- 99.7 2.3E-17 5.1E-22 122.1 11.5 108 3-122 1-115 (581)
189 cd04104 p47_IIGP_like p47 (47- 99.7 4.7E-17 1E-21 106.0 11.4 113 2-122 1-119 (197)
190 PF02421 FeoB_N: Ferrous iron 99.7 1.8E-17 3.9E-22 103.5 8.6 108 3-121 1-116 (156)
191 cd04163 Era Era subfamily. Er 99.7 8.6E-17 1.9E-21 101.2 11.8 113 2-123 3-124 (168)
192 PRK12296 obgE GTPase CgtA; Rev 99.7 6.9E-17 1.5E-21 116.8 12.6 114 3-122 160-296 (500)
193 cd01895 EngA2 EngA2 subfamily. 99.7 1.2E-16 2.5E-21 101.3 12.3 112 2-122 2-125 (174)
194 PRK04004 translation initiatio 99.7 4.4E-17 9.6E-22 120.5 10.9 112 3-122 7-135 (586)
195 PRK05433 GTP-binding protein L 99.7 5.9E-17 1.3E-21 120.2 11.3 115 4-123 9-139 (600)
196 PRK15467 ethanolamine utilizat 99.7 1.5E-17 3.2E-22 104.9 7.0 98 4-123 3-104 (158)
197 TIGR03594 GTPase_EngA ribosome 99.7 2.2E-16 4.8E-21 113.6 13.9 112 3-123 173-296 (429)
198 PRK10218 GTP-binding protein; 99.7 2.9E-16 6.2E-21 116.4 13.9 114 3-123 6-133 (607)
199 PRK09518 bifunctional cytidyla 99.7 2.4E-16 5.2E-21 119.3 13.5 111 3-122 276-395 (712)
200 cd01850 CDC_Septin CDC/Septin. 99.7 1.7E-16 3.6E-21 108.2 11.4 114 1-122 3-155 (276)
201 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.5E-16 3.3E-21 104.5 10.3 113 4-122 1-142 (208)
202 PF01926 MMR_HSR1: 50S ribosom 99.7 8.2E-16 1.8E-20 92.2 12.5 104 4-119 1-116 (116)
203 PRK12298 obgE GTPase CgtA; Rev 99.7 4E-16 8.7E-21 110.6 12.7 114 4-122 161-287 (390)
204 TIGR01394 TypA_BipA GTP-bindin 99.7 2.8E-16 6.2E-21 116.4 12.2 112 4-122 3-128 (594)
205 cd01888 eIF2_gamma eIF2-gamma 99.7 1.7E-16 3.6E-21 103.9 9.8 113 3-122 1-149 (203)
206 cd01876 YihA_EngB The YihA (En 99.7 3.2E-16 7E-21 98.8 10.3 107 4-122 1-122 (170)
207 PRK00089 era GTPase Era; Revie 99.7 6.3E-16 1.4E-20 106.3 12.3 109 4-122 7-125 (292)
208 PRK12317 elongation factor 1-a 99.7 4.1E-16 8.8E-21 112.2 11.8 116 2-122 6-151 (425)
209 cd00880 Era_like Era (E. coli 99.7 4.5E-16 9.9E-21 97.0 10.5 108 7-122 1-116 (163)
210 PF00009 GTP_EFTU: Elongation 99.7 1.2E-15 2.7E-20 98.6 12.6 112 3-123 4-135 (188)
211 TIGR00483 EF-1_alpha translati 99.7 2E-16 4.4E-21 113.7 9.6 114 2-122 7-153 (426)
212 PRK00741 prfC peptide chain re 99.7 2.4E-16 5.3E-21 115.4 9.9 115 3-124 11-145 (526)
213 PRK09518 bifunctional cytidyla 99.7 6.5E-16 1.4E-20 117.0 12.3 111 3-122 451-573 (712)
214 cd04170 EF-G_bact Elongation f 99.7 9.8E-16 2.1E-20 104.2 11.8 113 4-123 1-129 (268)
215 cd01896 DRG The developmentall 99.7 2.6E-15 5.6E-20 100.2 13.1 81 4-90 2-91 (233)
216 PRK09554 feoB ferrous iron tra 99.7 2E-15 4.3E-20 114.7 13.8 110 2-122 3-124 (772)
217 PRK13351 elongation factor G; 99.7 1.2E-15 2.7E-20 115.3 12.6 111 3-124 9-139 (687)
218 COG1160 Predicted GTPases [Gen 99.7 5.9E-16 1.3E-20 109.3 10.1 110 3-123 4-125 (444)
219 TIGR00503 prfC peptide chain r 99.7 6.5E-16 1.4E-20 113.2 10.4 115 3-124 12-146 (527)
220 PRK00093 GTP-binding protein D 99.7 4.6E-15 1E-19 107.0 14.2 111 3-122 174-296 (435)
221 cd01886 EF-G Elongation factor 99.7 3.6E-15 7.9E-20 101.3 11.9 113 4-123 1-129 (270)
222 TIGR00437 feoB ferrous iron tr 99.6 2.8E-15 6.1E-20 111.3 11.7 103 9-122 1-111 (591)
223 cd01883 EF1_alpha Eukaryotic e 99.6 3.2E-15 6.9E-20 98.9 10.2 115 4-123 1-150 (219)
224 cd00066 G-alpha G protein alph 99.6 1E-14 2.2E-19 101.3 12.6 71 51-121 159-239 (317)
225 COG0218 Predicted GTPase [Gene 99.6 8.3E-15 1.8E-19 93.8 10.5 104 3-122 25-147 (200)
226 KOG0090|consensus 99.6 2.6E-15 5.6E-20 96.5 7.6 112 4-122 40-157 (238)
227 TIGR00484 EF-G translation elo 99.6 2E-14 4.4E-19 108.7 12.7 113 4-123 12-140 (689)
228 TIGR03680 eif2g_arch translati 99.6 1.1E-14 2.3E-19 104.2 10.2 118 2-122 4-146 (406)
229 COG1159 Era GTPase [General fu 99.6 3.1E-14 6.8E-19 95.9 11.1 108 4-122 8-126 (298)
230 KOG1489|consensus 99.6 7.9E-15 1.7E-19 99.4 8.2 121 4-133 198-335 (366)
231 COG0486 ThdF Predicted GTPase 99.6 7.5E-14 1.6E-18 99.0 12.5 107 3-122 218-336 (454)
232 cd01884 EF_Tu EF-Tu subfamily. 99.6 5.2E-14 1.1E-18 91.5 10.8 114 2-122 2-130 (195)
233 TIGR00490 aEF-2 translation el 99.6 1.9E-14 4.2E-19 109.1 10.1 114 3-123 20-151 (720)
234 PRK10512 selenocysteinyl-tRNA- 99.6 3.5E-14 7.6E-19 105.8 11.0 109 4-122 2-116 (614)
235 PRK04000 translation initiatio 99.5 8E-14 1.7E-18 99.8 10.1 114 2-122 9-151 (411)
236 TIGR00485 EF-Tu translation el 99.5 2E-13 4.3E-18 97.5 11.7 114 2-122 12-140 (394)
237 COG1084 Predicted GTPase [Gene 99.5 7E-14 1.5E-18 95.3 8.8 109 4-121 170-291 (346)
238 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.9E-13 4.2E-18 88.9 10.7 112 3-122 1-128 (196)
239 PRK12735 elongation factor Tu; 99.5 2.3E-13 4.9E-18 97.2 11.8 114 2-122 12-140 (396)
240 smart00010 small_GTPase Small 99.5 8.3E-14 1.8E-18 83.9 8.3 88 3-122 1-89 (124)
241 cd04165 GTPBP1_like GTPBP1-lik 99.5 2.8E-13 6.1E-18 89.9 10.5 114 4-122 1-150 (224)
242 PRK12736 elongation factor Tu; 99.5 3.7E-13 8E-18 96.0 11.1 114 2-122 12-140 (394)
243 PLN03126 Elongation factor Tu; 99.5 5.5E-13 1.2E-17 96.9 11.6 113 3-122 82-209 (478)
244 PF05049 IIGP: Interferon-indu 99.5 8E-14 1.7E-18 97.7 6.6 114 2-122 35-153 (376)
245 PRK12739 elongation factor G; 99.5 6.5E-13 1.4E-17 100.6 11.9 112 3-123 9-138 (691)
246 CHL00071 tufA elongation facto 99.5 1.1E-12 2.5E-17 94.0 12.1 114 2-122 12-140 (409)
247 cd01853 Toc34_like Toc34-like 99.5 2.3E-12 4.9E-17 86.7 12.6 115 2-122 31-161 (249)
248 PLN03127 Elongation factor Tu; 99.5 2.7E-12 5.8E-17 92.8 12.5 114 2-122 61-189 (447)
249 TIGR02034 CysN sulfate adenyly 99.5 9.4E-13 2E-17 94.3 10.0 114 3-122 1-145 (406)
250 PRK05124 cysN sulfate adenylyl 99.4 1.8E-12 4E-17 94.3 11.2 115 2-122 27-172 (474)
251 cd01899 Ygr210 Ygr210 subfamil 99.4 1.9E-12 4.2E-17 89.7 10.3 84 5-88 1-111 (318)
252 COG3596 Predicted GTPase [Gene 99.4 7.1E-13 1.5E-17 88.6 7.6 114 2-121 39-159 (296)
253 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.1E-11 2.4E-16 85.0 13.6 116 2-122 38-165 (313)
254 PLN00043 elongation factor 1-a 99.4 2.3E-12 5E-17 93.2 10.8 114 2-122 7-157 (447)
255 PRK00049 elongation factor Tu; 99.4 4.4E-12 9.6E-17 90.6 11.7 114 2-122 12-140 (396)
256 KOG3886|consensus 99.4 5E-13 1.1E-17 87.2 5.7 116 1-123 3-129 (295)
257 PRK05506 bifunctional sulfate 99.4 3E-12 6.6E-17 96.2 10.8 115 2-122 24-169 (632)
258 PRK00007 elongation factor G; 99.4 4.6E-12 9.9E-17 96.1 11.8 113 4-123 12-140 (693)
259 PRK12740 elongation factor G; 99.4 2.8E-12 6E-17 97.0 10.3 105 8-123 1-125 (668)
260 PLN00116 translation elongatio 99.4 3.1E-12 6.8E-17 98.6 10.7 115 4-123 21-163 (843)
261 COG2262 HflX GTPases [General 99.4 8.6E-12 1.9E-16 87.4 11.3 114 3-122 193-316 (411)
262 PTZ00141 elongation factor 1- 99.4 6.6E-12 1.4E-16 90.8 11.2 115 2-122 7-157 (446)
263 PF10662 PduV-EutP: Ethanolami 99.4 2.4E-12 5.2E-17 79.1 7.6 96 4-123 3-102 (143)
264 KOG3905|consensus 99.4 7.8E-12 1.7E-16 85.5 10.5 97 4-103 54-155 (473)
265 PF00735 Septin: Septin; Inte 99.4 1.4E-11 3E-16 84.2 11.8 116 1-122 3-154 (281)
266 KOG1423|consensus 99.4 5.7E-12 1.2E-16 85.4 9.7 112 3-121 73-196 (379)
267 smart00275 G_alpha G protein a 99.4 1.1E-11 2.4E-16 86.9 11.3 85 31-121 168-262 (342)
268 PTZ00416 elongation factor 2; 99.4 8.7E-12 1.9E-16 96.1 10.9 115 4-123 21-157 (836)
269 COG0532 InfB Translation initi 99.4 9.6E-12 2.1E-16 89.6 9.9 110 5-123 8-120 (509)
270 PRK07560 elongation factor EF- 99.3 7.6E-12 1.6E-16 95.4 9.6 114 4-122 22-151 (731)
271 PRK09602 translation-associate 99.3 3.2E-11 7E-16 86.0 12.1 85 3-87 2-113 (396)
272 COG0370 FeoB Fe2+ transport sy 99.3 1.5E-11 3.3E-16 90.8 10.5 109 2-121 3-119 (653)
273 PF00350 Dynamin_N: Dynamin fa 99.3 5.7E-11 1.2E-15 75.3 11.2 64 53-120 101-168 (168)
274 PF05783 DLIC: Dynein light in 99.3 4.7E-11 1E-15 86.5 11.8 96 4-102 27-127 (472)
275 PF04548 AIG1: AIG1 family; I 99.3 8.3E-11 1.8E-15 77.5 11.1 111 3-121 1-127 (212)
276 KOG1145|consensus 99.3 2.1E-11 4.6E-16 88.2 8.4 114 5-126 156-269 (683)
277 COG1160 Predicted GTPases [Gen 99.3 6.3E-11 1.4E-15 84.2 10.6 112 3-122 179-301 (444)
278 KOG0082|consensus 99.3 1.1E-10 2.4E-15 81.2 11.4 84 32-121 180-273 (354)
279 COG0536 Obg Predicted GTPase [ 99.3 3E-11 6.5E-16 83.0 8.4 110 4-122 161-287 (369)
280 KOG1191|consensus 99.3 9.2E-11 2E-15 83.9 11.0 117 3-122 269-401 (531)
281 PRK14845 translation initiatio 99.3 3.9E-11 8.4E-16 93.5 9.1 102 13-122 472-590 (1049)
282 KOG0468|consensus 99.2 1.2E-10 2.5E-15 86.1 10.1 114 3-121 129-260 (971)
283 cd01882 BMS1 Bms1. Bms1 is an 99.2 2.7E-10 5.8E-15 75.8 10.0 105 3-122 40-145 (225)
284 KOG0462|consensus 99.2 4.5E-10 9.7E-15 81.4 10.1 119 4-127 62-194 (650)
285 COG5256 TEF1 Translation elong 99.2 3.7E-10 8.1E-15 79.4 9.2 117 2-123 7-158 (428)
286 smart00053 DYNc Dynamin, GTPas 99.1 1.9E-09 4.2E-14 72.1 12.1 66 53-122 125-204 (240)
287 KOG3887|consensus 99.1 2.4E-10 5.2E-15 75.5 7.2 115 1-122 26-147 (347)
288 KOG1707|consensus 99.1 1.4E-09 3E-14 79.3 11.4 113 3-122 426-538 (625)
289 COG0480 FusA Translation elong 99.1 9.6E-10 2.1E-14 83.0 10.6 112 4-122 12-140 (697)
290 COG1217 TypA Predicted membran 99.1 8.6E-10 1.9E-14 78.8 9.4 112 4-122 7-132 (603)
291 COG4108 PrfC Peptide chain rel 99.1 9.4E-10 2E-14 78.0 9.2 114 4-126 14-149 (528)
292 PRK13768 GTPase; Provisional 99.1 3.9E-10 8.5E-15 76.2 7.0 67 54-122 98-174 (253)
293 TIGR00993 3a0901s04IAP86 chlor 99.1 2E-09 4.4E-14 80.2 11.0 116 2-122 118-248 (763)
294 COG1163 DRG Predicted GTPase [ 99.1 1.9E-09 4.2E-14 73.8 9.6 93 3-101 64-166 (365)
295 PF03029 ATP_bind_1: Conserved 99.0 3.7E-10 8.1E-15 75.6 5.4 68 54-122 92-168 (238)
296 PTZ00327 eukaryotic translatio 99.0 3E-09 6.4E-14 77.3 9.9 118 2-122 34-183 (460)
297 PTZ00258 GTP-binding protein; 99.0 6.3E-09 1.4E-13 74.0 11.3 85 3-87 22-126 (390)
298 COG0481 LepA Membrane GTPase L 99.0 4.3E-09 9.3E-14 75.5 10.1 119 4-127 11-145 (603)
299 COG5019 CDC3 Septin family pro 99.0 1.1E-08 2.3E-13 71.2 11.2 116 1-122 22-174 (373)
300 PRK09601 GTP-binding protein Y 99.0 6.1E-09 1.3E-13 73.3 9.9 87 1-87 1-107 (364)
301 PRK09866 hypothetical protein; 99.0 1.2E-08 2.6E-13 76.0 11.8 67 53-122 230-301 (741)
302 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 2E-09 4.3E-14 66.6 6.0 54 4-63 85-138 (141)
303 TIGR02836 spore_IV_A stage IV 98.9 4E-08 8.7E-13 70.0 12.4 115 2-121 17-191 (492)
304 KOG2655|consensus 98.9 1.9E-08 4.1E-13 70.3 10.7 115 1-121 20-169 (366)
305 cd01900 YchF YchF subfamily. 98.9 6.9E-09 1.5E-13 70.7 8.0 83 5-87 1-103 (274)
306 KOG1547|consensus 98.9 7.5E-08 1.6E-12 63.8 10.8 115 1-121 45-195 (336)
307 KOG0705|consensus 98.9 2.5E-09 5.4E-14 77.7 3.9 111 2-121 30-140 (749)
308 cd01859 MJ1464 MJ1464. This f 98.8 2E-08 4.3E-13 63.1 6.6 54 3-62 102-155 (156)
309 cd01856 YlqF YlqF. Proteins o 98.8 2.2E-08 4.7E-13 63.9 6.6 55 3-63 116-170 (171)
310 cd04178 Nucleostemin_like Nucl 98.8 2.3E-08 4.9E-13 63.9 6.0 54 3-62 118-171 (172)
311 cd01858 NGP_1 NGP-1. Autoanti 98.8 3E-08 6.6E-13 62.4 6.5 54 3-62 103-156 (157)
312 KOG0458|consensus 98.7 6.9E-08 1.5E-12 70.6 8.1 115 3-122 178-327 (603)
313 KOG1954|consensus 98.7 2.9E-07 6.2E-12 64.6 10.4 115 3-122 59-223 (532)
314 TIGR00157 ribosome small subun 98.7 4.3E-08 9.3E-13 66.0 6.1 55 64-122 24-79 (245)
315 TIGR03596 GTPase_YlqF ribosome 98.7 6.3E-08 1.4E-12 66.3 6.8 55 3-63 119-173 (276)
316 PRK09563 rbgA GTPase YlqF; Rev 98.7 9.3E-08 2E-12 65.9 7.5 56 3-64 122-177 (287)
317 cd01855 YqeH YqeH. YqeH is an 98.7 4.7E-08 1E-12 63.3 5.6 55 3-62 128-189 (190)
318 TIGR03348 VI_IcmF type VI secr 98.6 1E-07 2.2E-12 76.4 7.2 109 5-121 114-254 (1169)
319 KOG1144|consensus 98.6 1.9E-07 4E-12 70.4 7.8 110 4-121 477-603 (1064)
320 TIGR00092 GTP-binding protein 98.6 4.4E-07 9.6E-12 64.1 9.0 88 1-88 1-109 (368)
321 COG0012 Predicted GTPase, prob 98.6 2.8E-07 6.2E-12 64.6 7.7 87 1-88 1-109 (372)
322 PF00503 G-alpha: G-protein al 98.6 7.3E-07 1.6E-11 63.9 9.4 85 32-121 220-314 (389)
323 COG1161 Predicted GTPases [Gen 98.6 2E-07 4.4E-12 65.1 6.3 56 2-63 132-187 (322)
324 cd01851 GBP Guanylate-binding 98.5 1.5E-06 3.2E-11 57.9 9.5 84 4-90 9-105 (224)
325 cd01849 YlqF_related_GTPase Yl 98.5 3.9E-07 8.5E-12 57.2 6.1 53 3-62 101-154 (155)
326 KOG1490|consensus 98.5 2.6E-07 5.7E-12 66.9 5.5 110 4-121 170-292 (620)
327 KOG1486|consensus 98.5 2.8E-06 6.1E-11 57.0 9.8 95 3-102 63-166 (364)
328 KOG0410|consensus 98.4 6.3E-07 1.4E-11 61.9 6.1 111 5-121 181-305 (410)
329 KOG2486|consensus 98.4 6.9E-07 1.5E-11 60.4 6.1 107 3-121 137-259 (320)
330 COG2895 CysN GTPases - Sulfate 98.4 1.9E-06 4.2E-11 60.1 8.2 113 3-127 7-156 (431)
331 PF03193 DUF258: Protein of un 98.4 2.4E-07 5.1E-12 58.4 3.3 23 4-26 37-59 (161)
332 KOG4273|consensus 98.4 1.1E-06 2.5E-11 58.8 6.5 113 4-121 6-120 (418)
333 PRK12288 GTPase RsgA; Reviewed 98.4 1.1E-06 2.5E-11 61.9 6.3 23 5-27 208-230 (347)
334 KOG0085|consensus 98.4 2.4E-07 5.3E-12 61.2 2.4 71 51-121 197-277 (359)
335 COG4917 EutP Ethanolamine util 98.4 5.2E-07 1.1E-11 54.0 3.4 96 4-122 3-102 (148)
336 KOG1491|consensus 98.3 4.2E-06 9E-11 58.2 7.8 87 2-88 20-126 (391)
337 KOG0461|consensus 98.3 5.4E-06 1.2E-10 58.0 8.0 111 2-121 7-133 (522)
338 TIGR03597 GTPase_YqeH ribosome 98.3 1.9E-06 4.2E-11 61.2 6.0 23 4-26 156-178 (360)
339 PRK13796 GTPase YqeH; Provisio 98.3 1.7E-06 3.6E-11 61.6 5.7 22 4-25 162-183 (365)
340 PRK12289 GTPase RsgA; Reviewed 98.3 1.8E-06 3.9E-11 61.0 5.8 23 5-27 175-197 (352)
341 TIGR00750 lao LAO/AO transport 98.3 7.6E-06 1.6E-10 56.8 8.5 60 52-123 126-185 (300)
342 TIGR00157 ribosome small subun 98.3 2.5E-06 5.5E-11 57.5 6.0 24 4-27 122-145 (245)
343 cd01854 YjeQ_engC YjeQ/EngC. 98.3 3.1E-06 6.7E-11 58.4 6.2 25 4-28 163-187 (287)
344 KOG0464|consensus 98.2 4.5E-07 9.7E-12 64.7 1.7 112 4-122 39-166 (753)
345 COG1136 SalX ABC-type antimicr 98.2 2.5E-06 5.4E-11 56.5 4.8 23 5-27 34-56 (226)
346 COG0050 TufB GTPases - transla 98.2 1.1E-05 2.5E-10 55.2 7.7 114 3-122 13-140 (394)
347 KOG3859|consensus 98.2 6.4E-06 1.4E-10 56.0 6.2 60 1-62 41-104 (406)
348 PRK00098 GTPase RsgA; Reviewed 98.2 5.3E-06 1.1E-10 57.5 5.8 24 4-27 166-189 (298)
349 KOG0467|consensus 98.2 1.5E-05 3.3E-10 60.4 8.1 107 4-121 11-135 (887)
350 PRK09435 membrane ATPase/prote 98.1 3E-05 6.6E-10 54.4 9.2 59 52-122 148-206 (332)
351 KOG1532|consensus 98.1 3.5E-05 7.6E-10 52.4 8.6 23 3-25 20-42 (366)
352 COG1116 TauB ABC-type nitrate/ 98.1 4.3E-06 9.4E-11 55.8 3.6 24 5-28 32-55 (248)
353 cd03112 CobW_like The function 98.1 4.4E-05 9.6E-10 48.1 8.0 22 5-26 3-24 (158)
354 COG1126 GlnQ ABC-type polar am 98.1 5.4E-06 1.2E-10 54.4 3.6 25 4-28 30-54 (240)
355 PRK10416 signal recognition pa 98.0 2.8E-05 6.1E-10 54.4 7.3 22 4-25 116-137 (318)
356 TIGR01425 SRP54_euk signal rec 98.0 4.1E-05 8.8E-10 55.5 8.3 112 4-122 102-251 (429)
357 PRK08118 topology modulation p 98.0 5.2E-06 1.1E-10 52.9 3.2 23 3-25 2-24 (167)
358 cd00009 AAA The AAA+ (ATPases 98.0 7E-05 1.5E-09 45.6 8.1 24 4-27 21-44 (151)
359 PF13555 AAA_29: P-loop contai 98.0 6.6E-06 1.4E-10 43.5 3.0 23 5-27 26-48 (62)
360 COG1162 Predicted GTPases [Gen 98.0 9.3E-06 2E-10 55.8 4.4 22 5-26 167-188 (301)
361 COG0563 Adk Adenylate kinase a 98.0 5.3E-06 1.2E-10 53.3 3.0 23 3-25 1-23 (178)
362 PF13207 AAA_17: AAA domain; P 98.0 6E-06 1.3E-10 49.5 3.0 22 4-25 1-22 (121)
363 COG3839 MalK ABC-type sugar tr 98.0 7.4E-06 1.6E-10 57.4 3.6 24 5-28 32-55 (338)
364 PRK14722 flhF flagellar biosyn 98.0 6.3E-05 1.4E-09 53.6 8.1 22 4-25 139-160 (374)
365 cd02038 FleN-like FleN is a me 98.0 6.6E-05 1.4E-09 46.3 7.4 106 6-122 4-109 (139)
366 KOG0448|consensus 98.0 6.8E-05 1.5E-09 56.5 8.5 67 54-125 207-276 (749)
367 KOG1424|consensus 98.0 1.2E-05 2.6E-10 58.6 4.5 56 3-64 315-370 (562)
368 PRK14531 adenylate kinase; Pro 98.0 7.9E-06 1.7E-10 52.7 3.3 25 1-25 1-25 (183)
369 cd03115 SRP The signal recogni 98.0 7.9E-05 1.7E-09 47.5 7.7 64 52-122 82-151 (173)
370 TIGR00064 ftsY signal recognit 98.0 3.9E-05 8.4E-10 52.6 6.6 21 4-24 74-94 (272)
371 PRK07261 topology modulation p 98.0 8.3E-06 1.8E-10 52.1 3.1 23 3-25 1-23 (171)
372 COG3276 SelB Selenocysteine-sp 98.0 9.3E-05 2E-09 53.2 8.6 109 4-122 2-115 (447)
373 KOG0447|consensus 97.9 0.0002 4.3E-09 53.2 10.0 67 52-121 411-490 (980)
374 COG3523 IcmF Type VI protein s 97.9 3.2E-05 7E-10 61.8 6.4 110 5-121 128-267 (1188)
375 PF13671 AAA_33: AAA domain; P 97.9 9.2E-06 2E-10 50.0 2.8 21 5-25 2-22 (143)
376 PF00005 ABC_tran: ABC transpo 97.9 1.1E-05 2.3E-10 49.4 3.0 24 4-27 13-36 (137)
377 PF05621 TniB: Bacterial TniB 97.9 1E-05 2.2E-10 55.7 3.1 115 4-119 63-189 (302)
378 PRK10078 ribose 1,5-bisphospho 97.9 1.3E-05 2.8E-10 51.9 3.3 25 2-26 2-26 (186)
379 COG1120 FepC ABC-type cobalami 97.9 1.7E-05 3.6E-10 53.7 3.6 23 5-27 31-53 (258)
380 COG3840 ThiQ ABC-type thiamine 97.8 2.1E-05 4.5E-10 50.6 3.5 25 4-28 27-51 (231)
381 KOG0099|consensus 97.8 7.2E-05 1.6E-09 50.6 6.2 71 51-121 200-280 (379)
382 PRK14530 adenylate kinase; Pro 97.8 1.6E-05 3.5E-10 52.5 3.2 25 1-25 2-26 (215)
383 COG3842 PotA ABC-type spermidi 97.8 1.9E-05 4.1E-10 55.7 3.6 24 5-28 34-57 (352)
384 cd03222 ABC_RNaseL_inhibitor T 97.8 2.3E-05 5E-10 50.3 3.7 24 4-27 27-50 (177)
385 PF13521 AAA_28: AAA domain; P 97.8 1.3E-05 2.8E-10 50.6 2.4 22 4-25 1-22 (163)
386 PF05729 NACHT: NACHT domain 97.8 7.9E-05 1.7E-09 46.7 5.9 23 5-27 3-25 (166)
387 PF00004 AAA: ATPase family as 97.8 2E-05 4.3E-10 47.6 2.9 22 5-26 1-22 (132)
388 cd03238 ABC_UvrA The excision 97.8 2.3E-05 5E-10 50.3 3.2 21 4-24 23-43 (176)
389 cd03226 ABC_cobalt_CbiO_domain 97.8 3E-05 6.6E-10 50.8 3.9 24 4-27 28-51 (205)
390 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 3E-05 6.6E-10 51.2 3.8 24 4-27 32-55 (218)
391 cd02019 NK Nucleoside/nucleoti 97.8 2.6E-05 5.7E-10 42.2 2.8 21 5-25 2-22 (69)
392 cd00820 PEPCK_HprK Phosphoenol 97.8 2.4E-05 5.2E-10 46.0 2.8 20 4-23 17-36 (107)
393 TIGR00960 3a0501s02 Type II (G 97.8 3.4E-05 7.5E-10 50.9 3.9 24 4-27 31-54 (216)
394 smart00382 AAA ATPases associa 97.8 2.9E-05 6.2E-10 46.9 3.2 26 3-28 3-28 (148)
395 TIGR01166 cbiO cobalt transpor 97.8 3.4E-05 7.3E-10 50.0 3.6 24 4-27 20-43 (190)
396 cd00071 GMPK Guanosine monopho 97.8 2.6E-05 5.6E-10 48.0 2.9 21 5-25 2-22 (137)
397 PRK06217 hypothetical protein; 97.8 2.9E-05 6.4E-10 50.0 3.3 23 3-25 2-24 (183)
398 cd03225 ABC_cobalt_CbiO_domain 97.8 3.8E-05 8.2E-10 50.5 3.9 24 4-27 29-52 (211)
399 cd03261 ABC_Org_Solvent_Resist 97.8 3.7E-05 8E-10 51.4 3.9 24 4-27 28-51 (235)
400 cd01855 YqeH YqeH. YqeH is an 97.8 2.9E-05 6.3E-10 50.3 3.2 50 66-122 24-73 (190)
401 cd03265 ABC_DrrA DrrA is the A 97.7 4E-05 8.6E-10 50.8 3.9 24 4-27 28-51 (220)
402 cd03269 ABC_putative_ATPase Th 97.7 4.1E-05 8.8E-10 50.3 3.9 24 4-27 28-51 (210)
403 TIGR02322 phosphon_PhnN phosph 97.7 2.5E-05 5.5E-10 50.0 2.9 22 4-25 3-24 (179)
404 PRK15177 Vi polysaccharide exp 97.7 3.6E-05 7.7E-10 50.9 3.6 24 4-27 15-38 (213)
405 TIGR03608 L_ocin_972_ABC putat 97.7 4.2E-05 9.1E-10 50.1 3.9 24 4-27 26-49 (206)
406 cd03292 ABC_FtsE_transporter F 97.7 4.2E-05 9.1E-10 50.4 3.9 24 4-27 29-52 (214)
407 COG1618 Predicted nucleotide k 97.7 3.4E-05 7.4E-10 48.4 3.2 25 1-25 4-28 (179)
408 COG4525 TauB ABC-type taurine 97.7 3.6E-05 7.8E-10 50.1 3.4 24 5-28 34-57 (259)
409 cd03264 ABC_drug_resistance_li 97.7 3.9E-05 8.4E-10 50.5 3.7 24 4-27 27-50 (211)
410 COG4619 ABC-type uncharacteriz 97.7 5.9E-05 1.3E-09 48.0 4.2 25 4-28 31-55 (223)
411 cd03262 ABC_HisP_GlnQ_permease 97.7 4.4E-05 9.5E-10 50.2 3.9 24 4-27 28-51 (213)
412 TIGR02673 FtsE cell division A 97.7 4.4E-05 9.6E-10 50.3 3.9 24 4-27 30-53 (214)
413 TIGR02211 LolD_lipo_ex lipopro 97.7 4.5E-05 9.7E-10 50.5 3.9 24 4-27 33-56 (221)
414 cd03218 ABC_YhbG The ABC trans 97.7 4.4E-05 9.5E-10 50.9 3.9 24 4-27 28-51 (232)
415 COG5192 BMS1 GTP-binding prote 97.7 0.00038 8.3E-09 52.0 8.9 106 3-122 70-175 (1077)
416 cd03263 ABC_subfamily_A The AB 97.7 4E-05 8.8E-10 50.7 3.7 24 4-27 30-53 (220)
417 cd03259 ABC_Carb_Solutes_like 97.7 4.6E-05 9.9E-10 50.2 3.9 24 4-27 28-51 (213)
418 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00051 1.1E-08 38.9 7.9 97 5-118 2-99 (99)
419 cd03293 ABC_NrtD_SsuB_transpor 97.7 4.7E-05 1E-09 50.4 3.9 24 4-27 32-55 (220)
420 cd03216 ABC_Carb_Monos_I This 97.7 5.1E-05 1.1E-09 48.0 3.9 24 4-27 28-51 (163)
421 cd03224 ABC_TM1139_LivF_branch 97.7 4.5E-05 9.8E-10 50.5 3.8 24 4-27 28-51 (222)
422 KOG0066|consensus 97.7 0.00056 1.2E-08 49.9 9.4 28 1-28 612-639 (807)
423 TIGR03263 guanyl_kin guanylate 97.7 3.2E-05 6.9E-10 49.6 3.0 23 4-26 3-25 (180)
424 PRK13541 cytochrome c biogenes 97.7 4.8E-05 1E-09 49.5 3.9 24 4-27 28-51 (195)
425 TIGR02315 ABC_phnC phosphonate 97.7 4.5E-05 9.7E-10 51.2 3.8 24 4-27 30-53 (243)
426 COG1121 ZnuC ABC-type Mn/Zn tr 97.7 3.7E-05 8.1E-10 51.8 3.4 23 5-27 33-55 (254)
427 TIGR00101 ureG urease accessor 97.7 3.6E-05 7.8E-10 50.4 3.2 24 2-25 1-24 (199)
428 TIGR00150 HI0065_YjeE ATPase, 97.7 0.00023 4.9E-09 43.6 6.5 23 4-26 24-46 (133)
429 PRK03839 putative kinase; Prov 97.7 3.3E-05 7.2E-10 49.6 3.0 22 4-25 2-23 (180)
430 cd03257 ABC_NikE_OppD_transpor 97.7 4.9E-05 1.1E-09 50.5 3.9 24 4-27 33-56 (228)
431 cd03219 ABC_Mj1267_LivG_branch 97.7 4.7E-05 1E-09 50.9 3.8 24 4-27 28-51 (236)
432 COG1117 PstB ABC-type phosphat 97.7 2.8E-05 6E-10 51.1 2.5 19 5-23 36-54 (253)
433 cd03235 ABC_Metallic_Cations A 97.7 5E-05 1.1E-09 50.0 3.8 24 4-27 27-50 (213)
434 PRK11248 tauB taurine transpor 97.7 5.1E-05 1.1E-09 51.5 3.9 24 4-27 29-52 (255)
435 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 4.9E-05 1.1E-09 47.2 3.6 24 4-27 28-51 (144)
436 cd03266 ABC_NatA_sodium_export 97.7 5.1E-05 1.1E-09 50.1 3.8 24 4-27 33-56 (218)
437 cd03258 ABC_MetN_methionine_tr 97.7 5.2E-05 1.1E-09 50.6 3.9 24 4-27 33-56 (233)
438 TIGR01189 ccmA heme ABC export 97.7 5.6E-05 1.2E-09 49.3 3.9 24 4-27 28-51 (198)
439 PF04665 Pox_A32: Poxvirus A32 97.7 3.6E-05 7.9E-10 51.6 3.0 24 2-25 13-36 (241)
440 cd01854 YjeQ_engC YjeQ/EngC. 97.7 9.2E-05 2E-09 51.1 5.1 48 71-122 73-121 (287)
441 cd03301 ABC_MalK_N The N-termi 97.7 5.6E-05 1.2E-09 49.8 3.9 24 4-27 28-51 (213)
442 PRK13540 cytochrome c biogenes 97.7 5.8E-05 1.3E-09 49.3 3.9 24 4-27 29-52 (200)
443 PRK10908 cell division protein 97.7 5.8E-05 1.2E-09 50.1 3.9 24 4-27 30-53 (222)
444 COG3638 ABC-type phosphate/pho 97.7 5E-05 1.1E-09 50.6 3.5 23 5-27 33-55 (258)
445 cd03268 ABC_BcrA_bacitracin_re 97.7 5.1E-05 1.1E-09 49.8 3.6 24 4-27 28-51 (208)
446 cd03229 ABC_Class3 This class 97.7 6.1E-05 1.3E-09 48.3 3.9 24 4-27 28-51 (178)
447 PRK11629 lolD lipoprotein tran 97.7 5.6E-05 1.2E-09 50.5 3.9 24 4-27 37-60 (233)
448 PRK13949 shikimate kinase; Pro 97.7 4.1E-05 8.8E-10 48.9 3.0 22 4-25 3-24 (169)
449 cd03215 ABC_Carb_Monos_II This 97.7 6.1E-05 1.3E-09 48.5 3.9 24 4-27 28-51 (182)
450 cd03296 ABC_CysA_sulfate_impor 97.7 5.1E-05 1.1E-09 50.9 3.6 24 4-27 30-53 (239)
451 KOG0465|consensus 97.7 6.2E-05 1.3E-09 56.1 4.3 111 4-121 41-167 (721)
452 PRK11247 ssuB aliphatic sulfon 97.7 5.7E-05 1.2E-09 51.3 3.9 24 4-27 40-63 (257)
453 cd03214 ABC_Iron-Siderophores_ 97.7 6.4E-05 1.4E-09 48.3 3.9 24 4-27 27-50 (180)
454 TIGR03864 PQQ_ABC_ATP ABC tran 97.7 5.9E-05 1.3E-09 50.5 3.9 24 4-27 29-52 (236)
455 cd03256 ABC_PhnC_transporter A 97.7 5.2E-05 1.1E-09 50.9 3.6 24 4-27 29-52 (241)
456 cd01130 VirB11-like_ATPase Typ 97.7 4.4E-05 9.5E-10 49.4 3.2 24 4-27 27-50 (186)
457 cd03237 ABC_RNaseL_inhibitor_d 97.7 6.2E-05 1.3E-09 50.9 3.9 25 4-28 27-51 (246)
458 PRK14532 adenylate kinase; Pro 97.7 4.3E-05 9.4E-10 49.4 3.0 23 3-25 1-23 (188)
459 cd03223 ABCD_peroxisomal_ALDP 97.7 7E-05 1.5E-09 47.6 3.9 24 4-27 29-52 (166)
460 cd03230 ABC_DR_subfamily_A Thi 97.7 7.1E-05 1.5E-09 47.8 3.9 24 4-27 28-51 (173)
461 cd03297 ABC_ModC_molybdenum_tr 97.7 6E-05 1.3E-09 49.7 3.7 24 4-27 25-48 (214)
462 PRK13539 cytochrome c biogenes 97.7 6.8E-05 1.5E-09 49.3 3.9 24 4-27 30-53 (207)
463 cd01859 MJ1464 MJ1464. This f 97.7 5.3E-05 1.2E-09 47.5 3.3 52 66-122 2-53 (156)
464 TIGR03410 urea_trans_UrtE urea 97.7 6.5E-05 1.4E-09 50.1 3.9 24 4-27 28-51 (230)
465 TIGR01360 aden_kin_iso1 adenyl 97.7 4.4E-05 9.5E-10 49.1 2.9 21 4-24 5-25 (188)
466 PF03266 NTPase_1: NTPase; In 97.7 5.3E-05 1.1E-09 48.3 3.2 22 4-25 1-22 (168)
467 PF06858 NOG1: Nucleolar GTP-b 97.7 0.0004 8.7E-09 36.0 5.8 44 76-121 13-58 (58)
468 PRK10895 lipopolysaccharide AB 97.6 6.8E-05 1.5E-09 50.4 3.9 24 4-27 31-54 (241)
469 PRK13538 cytochrome c biogenes 97.6 7.2E-05 1.6E-09 49.0 3.9 24 4-27 29-52 (204)
470 PRK10584 putative ABC transpor 97.6 6.3E-05 1.4E-09 50.1 3.7 24 4-27 38-61 (228)
471 cd03254 ABCC_Glucan_exporter_l 97.6 7E-05 1.5E-09 49.9 3.9 24 4-27 31-54 (229)
472 COG4181 Predicted ABC-type tra 97.6 0.00021 4.6E-09 45.7 5.7 24 4-27 38-61 (228)
473 PRK11124 artP arginine transpo 97.6 7E-05 1.5E-09 50.3 3.9 24 4-27 30-53 (242)
474 cd03298 ABC_ThiQ_thiamine_tran 97.6 7.3E-05 1.6E-09 49.2 3.9 24 4-27 26-49 (211)
475 KOG1143|consensus 97.6 0.00017 3.7E-09 51.2 5.8 116 1-121 166-314 (591)
476 PRK10247 putative ABC transpor 97.6 6.3E-05 1.4E-09 50.0 3.6 24 4-27 35-58 (225)
477 TIGR02323 CP_lyasePhnK phospho 97.6 7.1E-05 1.5E-09 50.6 3.9 24 4-27 31-54 (253)
478 cd03231 ABC_CcmA_heme_exporter 97.6 7.5E-05 1.6E-09 48.8 3.9 24 4-27 28-51 (201)
479 cd03247 ABCC_cytochrome_bd The 97.6 7.8E-05 1.7E-09 47.8 3.9 24 4-27 30-53 (178)
480 PRK15056 manganese/iron transp 97.6 7E-05 1.5E-09 51.3 3.9 24 4-27 35-58 (272)
481 cd03260 ABC_PstB_phosphate_tra 97.6 5.3E-05 1.1E-09 50.4 3.2 23 4-26 28-50 (227)
482 PF07728 AAA_5: AAA domain (dy 97.6 5.2E-05 1.1E-09 46.5 3.0 23 4-26 1-23 (139)
483 COG0194 Gmk Guanylate kinase [ 97.6 4.4E-05 9.5E-10 49.0 2.6 23 4-26 6-28 (191)
484 PF13238 AAA_18: AAA domain; P 97.6 4.9E-05 1.1E-09 45.7 2.8 21 5-25 1-21 (129)
485 PRK13543 cytochrome c biogenes 97.6 7.5E-05 1.6E-09 49.3 3.8 24 4-27 39-62 (214)
486 PRK12727 flagellar biosynthesi 97.6 0.0004 8.7E-09 51.6 7.8 21 4-24 352-372 (559)
487 PRK13638 cbiO cobalt transport 97.6 7.2E-05 1.6E-09 51.2 3.8 24 4-27 29-52 (271)
488 cd03246 ABCC_Protease_Secretio 97.6 8.1E-05 1.8E-09 47.5 3.8 24 4-27 30-53 (173)
489 TIGR01978 sufC FeS assembly AT 97.6 5.6E-05 1.2E-09 50.8 3.2 22 4-25 28-49 (243)
490 TIGR01184 ntrCD nitrate transp 97.6 8E-05 1.7E-09 49.7 3.9 24 4-27 13-36 (230)
491 PRK12289 GTPase RsgA; Reviewed 97.6 0.0002 4.3E-09 50.8 6.1 49 70-122 83-132 (352)
492 PRK14738 gmk guanylate kinase; 97.6 5.2E-05 1.1E-09 49.9 2.9 22 4-25 15-36 (206)
493 PRK11264 putative amino-acid A 97.6 8.2E-05 1.8E-09 50.2 3.9 24 4-27 31-54 (250)
494 TIGR02770 nickel_nikD nickel i 97.6 6.5E-05 1.4E-09 50.1 3.4 24 4-27 14-37 (230)
495 PRK02496 adk adenylate kinase; 97.6 6.7E-05 1.4E-09 48.3 3.3 23 3-25 2-24 (184)
496 PRK09544 znuC high-affinity zi 97.6 8.1E-05 1.8E-09 50.4 3.9 24 4-27 32-55 (251)
497 COG1131 CcmA ABC-type multidru 97.6 7.2E-05 1.6E-09 51.8 3.6 24 5-28 34-57 (293)
498 COG5257 GCD11 Translation init 97.6 0.00025 5.3E-09 49.4 6.1 114 2-121 10-151 (415)
499 COG1118 CysA ABC-type sulfate/ 97.6 7E-05 1.5E-09 51.7 3.5 24 5-28 31-54 (345)
500 cd03228 ABCC_MRP_Like The MRP 97.6 8.3E-05 1.8E-09 47.4 3.7 24 4-27 30-53 (171)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.4e-39 Score=204.41 Aligned_cols=117 Identities=26% Similarity=0.411 Sum_probs=110.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||+|+.|+.++.++..+..|+|+++...+... ++..++++||||.|||+|+.+..+||++|+|+|
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~--~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee--cceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 489999999999999999999999999999999999988777755 458889999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+|||+++.+||+++..|+.++.++.. +++|.++||||||
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~D 125 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCD 125 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccc
Confidence 99999999999999999999998876 5789999999999
No 2
>KOG0094|consensus
Probab=100.00 E-value=4.5e-36 Score=188.37 Aligned_cols=118 Identities=20% Similarity=0.359 Sum_probs=111.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++|++++|+.+|||||||+++..+.+...|.+|+|+++...+..+ .+..+.+++|||.|||+|+.+.+.|+++++++|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l--~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE--cCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 389999999999999999999999999999999999998887744 457999999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+|||+++..||++...|++++.++++..++-+++||||.|
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtD 139 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTD 139 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccc
Confidence 9999999999999999999999999877799999999999
No 3
>KOG0080|consensus
Probab=100.00 E-value=2.7e-35 Score=179.83 Aligned_cols=126 Identities=22% Similarity=0.320 Sum_probs=114.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+.++....+.+....|+|+++......+ ++..+++.||||.|||+|+.+.+.||+.|.++|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v--dg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV--DGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE--cCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 489999999999999999999999998888888999887766654 558899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC---CCcccccc
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP---GRGDSSGH 129 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D---~~~~~~~~ 129 (135)
+|||++.+++|.++..|++++..+...+++-.++||||+| ++.+++++
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reE 139 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREE 139 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHH
Confidence 9999999999999999999999998888999999999999 34666554
No 4
>KOG0092|consensus
Probab=100.00 E-value=9.5e-35 Score=182.06 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=110.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++|++++|+.+||||||+.|+..+.+.....||+|..|.+.+..... ..+++.||||.|+|+|.++.+.||++|+++|
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~--~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD--NTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC--cEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 68999999999999999999999999888899999999888887644 6899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+|||+++.+||..++.|++++.++.+ +++.+.|||||+|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~D 121 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKAD 121 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhh
Confidence 99999999999999999999988877 7899999999999
No 5
>KOG0078|consensus
Probab=100.00 E-value=3.4e-34 Score=182.28 Aligned_cols=128 Identities=20% Similarity=0.335 Sum_probs=115.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|+++||||+++.++..+.+...+..|+|+++...+... ++..+.+++|||.||++|+.+...||+.|.+++
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l--~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL--DGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe--CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 479999999999999999999999999999999999998877765 448899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC---Cccccccccc
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG---RGDSSGHAHS 132 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~---~~~~~~~l~~ 132 (135)
+|||+++..||+++..|+..+..+.. +++|.++||||+|. +.++.+.-++
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~ 142 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGEA 142 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHHH
Confidence 99999999999999999999988876 48999999999993 3455444443
No 6
>KOG0098|consensus
Probab=100.00 E-value=4e-34 Score=178.42 Aligned_cols=128 Identities=23% Similarity=0.318 Sum_probs=114.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+|++++|+.|||||+|+.+++...+.+.+..|+|+++-.....+ ++..++++||||.|++.|++....||+.+.+++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i--d~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI--DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE--cCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 589999999999999999999999999999999999887666644 458999999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC---CCccccccccc
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP---GRGDSSGHAHS 132 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D---~~~~~~~~l~~ 132 (135)
+|||+++.+||..+..|+.++.++.. +++.++|+|||+| .+.++++|-+.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~rR~Vs~EEGea 136 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEARREVSKEEGEA 136 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhccccccHHHHHH
Confidence 99999999999999999999988763 6999999999999 34555555443
No 7
>KOG0087|consensus
Probab=100.00 E-value=7.6e-34 Score=180.32 Aligned_cols=117 Identities=20% Similarity=0.353 Sum_probs=110.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
-+||+++|+++||||-|+.++...++..+..+|+|+.+.+....+ ++..++.+||||.|||+|+.+...||+.+.+++
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v--d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV--DGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee--cCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 479999999999999999999999999999999999888777644 558999999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+|||++.+.+|+++..|+.+++.+.. +++++++||||+|
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~D 130 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSD 130 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchh
Confidence 99999999999999999999998886 5999999999999
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5.4e-32 Score=176.45 Aligned_cols=117 Identities=24% Similarity=0.399 Sum_probs=104.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+.|+++|+.|||||||++++..+.+...+.+|++.++....... ++..+.+++||++|+++|+.++..|+++++++++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~--~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl 78 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL--RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 78 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE--CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence 37999999999999999999999998889999998776555443 3467999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||+++++||+++..|+..+.+... .++|+++||||+|.
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~~-~~~piilVgNK~DL 117 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDC 117 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence 9999999999999999998866543 47999999999994
No 9
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=5.9e-32 Score=173.03 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=102.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||+.++..+.+...+.||++..+. ... ..++..++++|||++|+++|+.++..++++++++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~--~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANV--SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEE--EECCEEEEEEEEECCCCccccccchhhcCCCcEEEE
Confidence 69999999999999999999999999889999987553 222 334578999999999999999999999999999999
Q ss_pred EEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||+++++||+++ ..|+.++.+... ++|++|||||+|.
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~~--~~piilvgnK~Dl 117 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYAP--NVPIVLVGTKLDL 117 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEeChhh
Confidence 9999999999998 789999976653 7999999999995
No 10
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=100.00 E-value=9.5e-32 Score=175.12 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=104.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeee---cCCceEEEEEEecCCCcccccchHHhhccCcE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA---LDTSKTEIELWDTSGDHKFESVWPAFQRDVHG 79 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 79 (135)
+||+++|++|||||||++++.++.+...+.+|+|.++........ .++..+.++|||++|+++|+.++..+|+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988899999987655555442 23467899999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhcc------------------CCCCceEEEEEecCCC
Q psy10117 80 IIFVFNSGVPGHISELLLFYDYFVTQS------------------DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~p~ivv~nK~D~ 122 (135)
+++|||+++++||+++..|+.++.+.. ...++|++|||||+|.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl 141 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQ 141 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccc
Confidence 999999999999999999999997642 1236899999999994
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=8.5e-32 Score=173.19 Aligned_cols=118 Identities=27% Similarity=0.420 Sum_probs=104.4
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
.++||+++|++|||||||+.++..+.+...+.||++..+. . ....++..+.+++||++|+++|+.++..++++++++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~--~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-A--SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-E--EEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 3689999999999999999999999999999999986553 2 234456789999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 81 IFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 81 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
++|||+++++||+++ ..|++++.+.. ++.|++|||||+|.+
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~ 122 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLR 122 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhh
Confidence 999999999999998 89999997765 379999999999953
No 12
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.7e-32 Score=172.69 Aligned_cols=116 Identities=24% Similarity=0.415 Sum_probs=103.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.++..+.||++..+. .. ...++..+.+++||++|++.|..++..+++++++++
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~--~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i 77 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-AS--FEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL 77 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EE--EEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence 589999999999999999999999999889999886542 22 334457899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++++||+++ ..|+..+.+.. ++.|+++||||+|.
T Consensus 78 lvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL 117 (178)
T cd04131 78 ICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDL 117 (178)
T ss_pred EEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhh
Confidence 99999999999996 89999998765 37999999999995
No 13
>KOG0095|consensus
Probab=100.00 E-value=4.6e-32 Score=164.12 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=108.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
-+||+++|..|+|||+|++++..+.+++....|+|+++.-.+.++ ++.+++++||||.|+++|+++.+.||+.++++|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev--~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV--NGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE--CCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 589999999999999999999999999999999999877666654 558999999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
++||++-..+|+.+.+|+.+|..+.. ..+--++||||.|
T Consensus 85 lvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d 123 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKID 123 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccc
Confidence 99999999999999999999988766 4677889999999
No 14
>KOG0093|consensus
Probab=100.00 E-value=4.2e-32 Score=163.67 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=108.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+|++++|.+.+|||||+.++++..+...+-.|.|+++...+. ......++++||||.|+|+++.+...||++++++|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTv--yr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV--YRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEe--eecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 4699999999999999999999999999999999998876644 34447799999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++||+++.+||..++.|+.+|..+.- .++|+++||||||.
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw-~naqvilvgnKCDm 138 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSW-DNAQVILVGNKCDM 138 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeec-cCceEEEEecccCC
Confidence 99999999999999999999987744 69999999999993
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.7e-31 Score=172.64 Aligned_cols=117 Identities=22% Similarity=0.355 Sum_probs=104.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|+.|||||||+.++..+.+...+.++.+..+...... .++..+.+++||++|+++|+.++..+++++++++
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~--~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTIL--LDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEE--ECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 47999999999999999999999888888888888876544443 3456799999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++++||+++..|++++..+. +++|++|||||+|.
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL 122 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHL 122 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence 9999999999999999999997664 48999999999995
No 16
>KOG0079|consensus
Probab=100.00 E-value=7.6e-33 Score=167.06 Aligned_cols=116 Identities=22% Similarity=0.422 Sum_probs=107.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+|.+|+|++|+|||+|+.++....+...|-.|+|+++.-.+.. .++..++++|||+.|+|+|+.+...||+..+++++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~--i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVD--INGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEee--cCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 4678999999999999999999999999999999987766654 45789999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||+++.+||.++..|++++.++++ ..|-++||||.|+
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~ 124 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDD 124 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCc--cccceecccCCCC
Confidence 9999999999999999999987765 8999999999993
No 17
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=2e-31 Score=172.85 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=102.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+.++..+.+...+.||++..+. ... ..++..+.+++||++|+++|+.++..+++++++++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~--~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQT--AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEE--EECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 389999999999999999999999998889999986543 222 33457899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++++||+++. .|+..+.... +++|++|||||+|.
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL 119 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDL 119 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhh
Confidence 999999999999996 6998886653 47999999999995
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=3.6e-31 Score=175.44 Aligned_cols=118 Identities=23% Similarity=0.398 Sum_probs=104.2
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
+.+||+++|++|||||||+.++..+.+...+.||++..+.. ....++..+.++||||+|+++|+.++..+|++++++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~---~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA---GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE---EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 36899999999999999999999999999999999876532 234456789999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 81 IFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 81 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
++|||+++++||+++ ..|+.++....+ +.|+++||||+|..
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~--~~piilVgNK~DL~ 130 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCP--STRILLIGCKTDLR 130 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCC--CCCEEEEEECcccc
Confidence 999999999999985 899999977553 78999999999953
No 19
>KOG0394|consensus
Probab=99.97 E-value=5.6e-32 Score=168.51 Aligned_cols=118 Identities=24% Similarity=0.417 Sum_probs=109.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|+|||||++++...++...+..|+|.++.+....++ +..+.++||||+|+|+|+++...||+++|++++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd--~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD--DRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc--CeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 799999999999999999999999999999999999988887665 588999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCC---CCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDL---NNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~ 122 (135)
|||+.+++||+.+..|-+++..+... ..-|++|+|||.|.
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV 130 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence 99999999999999999999887643 35799999999994
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.4e-30 Score=165.35 Aligned_cols=118 Identities=20% Similarity=0.331 Sum_probs=103.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++..+.+...+.++.+.++...... .++..+.+.+||++|+++++..+..+++++++++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE--VNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEE--ECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 58999999999999999999999998888888888876554443 3346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+.++..... ++.|+++||||+|.
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iiiv~nK~Dl 119 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADL 119 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence 99999999999999999999866543 47899999999994
No 21
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=1.3e-30 Score=167.27 Aligned_cols=121 Identities=25% Similarity=0.353 Sum_probs=106.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeec--------CCceEEEEEEecCCCcccccchHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYAL--------DTSKTEIELWDTSGDHKFESVWPAF 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------~~~~~~~~i~d~~g~~~~~~~~~~~ 73 (135)
.+||+++|++|||||||++++.++.+.+.+.++++.++......... .+..+.+.+||++|++++...+..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 47999999999999999999999999988999999877665554421 2456899999999999999999999
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++++++++|||++++++|..+..|+..+.......+.|+++||||+|.
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 132 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence 9999999999999999999999999999977655557899999999994
No 22
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.7e-30 Score=169.65 Aligned_cols=119 Identities=22% Similarity=0.393 Sum_probs=103.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+...+.+|++.++........ ++..+.+.+||++|+++++.++..++++++++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~il 79 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWD-PNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAII 79 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEE
Confidence 589999999999999999999999888899999987655444332 1467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhcc---CCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQS---DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+..|+..+.... ...++|+++||||+|.
T Consensus 80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl 122 (201)
T cd04107 80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDL 122 (201)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCc
Confidence 999999999999999999886532 2257899999999995
No 23
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=1.5e-30 Score=164.35 Aligned_cols=118 Identities=19% Similarity=0.320 Sum_probs=102.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++..+.+...+.+|.+..+ ... ...++..+.+++||++|+++++.++..+++++++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQ--IEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV 77 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEE--EEECCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence 47999999999999999999999988888888876432 222 233456788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.+.....+.|+++|+||+|.
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 118 (163)
T cd04136 78 LVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDL 118 (163)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999999999987665568999999999995
No 24
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=1.5e-30 Score=166.65 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=100.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+...+.||++..+. ... ..++..+.+++||++|++++..++..++++++++++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTV--MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEE--EECCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence 79999999999999999999999998889999987553 222 234567899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+++. .|+..+.... +++|+++||||+|.
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl 117 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDL 117 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhh
Confidence 99999999999996 6999887654 37999999999994
No 25
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=1.9e-30 Score=164.31 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=103.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++..+.+...+.++.+..+. .. ...++..+.+++||++|++++..++..+++++++++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQ--VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV 77 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EE--EEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEE
Confidence 579999999999999999999998888788888876542 22 233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+++..|+..+.+.....+.|+++|+||+|.
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 118 (164)
T cd04175 78 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 118 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 99999999999999999999987655568999999999995
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=1.7e-30 Score=165.89 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=102.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.++..+.|+.+..+. .....++..+.+++||++|+++++.++..+++.+++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK---QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE---EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE
Confidence 479999999999999999999999998888899886543 22233457789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++++||+.+..|+..+.+.....++|+++||||+|.
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl 119 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDL 119 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhh
Confidence 99999999999999999888876544457999999999994
No 27
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=177.23 Aligned_cols=121 Identities=18% Similarity=0.292 Sum_probs=105.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeec-----------CCceEEEEEEecCCCcccccch
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYAL-----------DTSKTEIELWDTSGDHKFESVW 70 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----------~~~~~~~~i~d~~g~~~~~~~~ 70 (135)
++||+++|+.|||||||++++.++.+...+.+|+|.++....+.+.. .+..+.++|||++|+++|+.++
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~ 100 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCR 100 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhh
Confidence 58999999999999999999999999888999999887655554421 2357899999999999999999
Q ss_pred HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-----------CCCceEEEEEecCCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-----------LNNHKCLLIDNVKPG 122 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ivv~nK~D~ 122 (135)
..||++++++|+|||+++.++|+++..|++++..... ..++|++|||||+|.
T Consensus 101 ~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 101 SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 9999999999999999999999999999999987532 125899999999995
No 28
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2e-30 Score=171.23 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=105.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++..+.+...+.+|++.++....... +...+.+++||++|+++|..++..+++++++++
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEE--CCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 579999999999999999999999998889999998877655433 335689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|..+..|+..+.+.. .+.|+++||||+|.
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl 129 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDV 129 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhh
Confidence 9999999999999999999997654 47999999999995
No 29
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=1.7e-30 Score=171.34 Aligned_cols=117 Identities=23% Similarity=0.384 Sum_probs=102.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||+.++..+.++..+.||++.++. . ....++..+.+.+||++|++.|..++..+|+++|+++
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~--~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il 77 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-A--SFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL 77 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-E--EEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence 479999999999999999999999999999999987653 2 2334557899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|||++++++|+++ ..|...+.... ++.|++|||||+|.+
T Consensus 78 lvfdis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL~ 118 (222)
T cd04173 78 ICFDISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECcccc
Confidence 99999999999999 57887775543 479999999999964
No 30
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=2.9e-30 Score=164.61 Aligned_cols=117 Identities=22% Similarity=0.392 Sum_probs=103.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
||+++|++|||||||++++.++.+...+.||++.++....... ++..+.+++||++|++++..++..+++++|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI--LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence 8999999999999999999999999999999998765444433 34678999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||++++++|+.+..|++.+.+......+|+++|+||+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 999999999999999999876544346899999999995
No 31
>KOG0086|consensus
Probab=99.97 E-value=3.1e-31 Score=161.08 Aligned_cols=118 Identities=21% Similarity=0.323 Sum_probs=108.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
-+|++++|+.|.|||+|+.+++..++.++...|+|+++....+.+. +..++++||||.|+|+|++....||+++.+++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVG--gK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVG--GKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeec--CcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 3799999999999999999999999999999999998877766553 48899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++.++|+.+..|+.++..... +++.++++|||.|.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL 126 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDL 126 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhc
Confidence 99999999999999999999976655 68999999999994
No 32
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=4e-30 Score=162.58 Aligned_cols=118 Identities=23% Similarity=0.322 Sum_probs=101.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.++.+. ++.... ..++..+.+++||++|+++|..++..+++++++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEI--EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 77 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEE--EECCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence 589999999999999999999999988888787763 223233 23446778999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+++..|+..+.+.....+.|+++|+||+|.
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl 118 (163)
T cd04176 78 VVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL 118 (163)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999999999887654468999999999995
No 33
>KOG0091|consensus
Probab=99.97 E-value=1.4e-31 Score=163.95 Aligned_cols=131 Identities=19% Similarity=0.332 Sum_probs=115.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+++++++|++-+|||||++.+..++++.-..||+|++++...++. .++..+++++|||.|+|+|+++...||++.-+++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~-~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIEL-RPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhc-CCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 689999999999999999999999999888999999887655544 3468899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCC---CCcccccccccc
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKP---GRGDSSGHAHSL 133 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D---~~~~~~~~l~~l 133 (135)
+|||+++++||++++.|+++...+.+ ...+.+++||+|+| .+.++.++.+.+
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEkl 142 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKL 142 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHH
Confidence 99999999999999999999877665 45678899999999 345666666554
No 34
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=4.6e-30 Score=165.27 Aligned_cols=116 Identities=22% Similarity=0.338 Sum_probs=102.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+...+.||.|.++....... ++..+.+++||++|+++|..++..++++++++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~--~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI--RGTEITFSIWDLGGQREFINMLPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEE
Confidence 58999999999999999999999998889999998776544433 3467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+++..|+.++.+... ...| ++||||+|.
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl 116 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDL 116 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhc
Confidence 9999999999999999999977544 3567 578999995
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=6.4e-30 Score=161.65 Aligned_cols=117 Identities=21% Similarity=0.342 Sum_probs=103.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+.+.+.++.+.++....... ++..+.+++||++|++++...+..++++++++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV--DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence 58999999999999999999999998888999998766555433 3467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+++..|+.++..... .++|+++||||+|.
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl 117 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAP-EGVQKILIGNKADE 117 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence 9999999999999999999876543 47999999999994
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=5.6e-30 Score=162.22 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=104.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||+++++++.+...+.++.+.++....... ++..+.+++||++|++.+..++..++++++++++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV--RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE--CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEE
Confidence 58999999999999999999999998889999998765544433 3467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCC----CCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDL----NNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+..|+.++.+.... .+.|+++|+||+|.
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 99999999999999999999876542 47999999999995
No 37
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=7.2e-30 Score=165.26 Aligned_cols=118 Identities=18% Similarity=0.304 Sum_probs=103.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.+|.+..+. .. ...++..+.+++||++|++.+..++..+++++++++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQ--CVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EE--EEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 589999999999999999999999888888888886552 22 233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.+.....+.|+++|+||+|.
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 122 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDL 122 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999999999987655568999999999995
No 38
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=6.4e-30 Score=161.40 Aligned_cols=118 Identities=19% Similarity=0.339 Sum_probs=104.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++++|||||++++.++.+...+.++.+.++..........+..+.+++||+||++++...+..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999999888888899988776555554433567899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+..|+..+.... .++|+++|+||+|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl 118 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDL 118 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhc
Confidence 999999999999999999986544 47999999999994
No 39
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=8.3e-30 Score=167.48 Aligned_cols=120 Identities=18% Similarity=0.335 Sum_probs=105.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.+|++.++........ ++..+.+++||++|++++...+..+++++++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE-PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEEC-CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 6899999999999999999999998888888999887766555432 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+++..|+.++.........|+++||||+|.
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 99999999999999999999987655457899999999995
No 40
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=1e-29 Score=160.73 Aligned_cols=116 Identities=18% Similarity=0.366 Sum_probs=101.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++..+.+.+.+.++.+.+++...... ++..+.+++||++|+++|..++..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF--EGKTILVDFWDTAGQERFQTMHASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE--CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence 58999999999999999999999888777777777655544433 3467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++.+|+.+..|+..+.+.. ++.|+++|+||+|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl 116 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDL 116 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccC
Confidence 999999999999999999997653 37899999999995
No 41
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=1.1e-29 Score=160.05 Aligned_cols=118 Identities=18% Similarity=0.304 Sum_probs=102.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.++.+..+ ... ...++..+.+++||++|+++++.++..+++++++++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i 77 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQ--VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 77 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEE--EEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence 47999999999999999999999988888888887543 222 233446678999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++.++|+++..|+..+.+.....+.|+++|+||+|.
T Consensus 78 ~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 118 (162)
T cd04138 78 CVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL 118 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999999999987765568999999999995
No 42
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=8.7e-30 Score=167.86 Aligned_cols=119 Identities=17% Similarity=0.264 Sum_probs=104.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||+++|.++.+...+.+|.+.+++........ ...+.++|||++|++.+...+..+++++|++++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~-~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iil 79 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPG-NLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFL 79 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCC-CCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence 5899999999999999999999999888999999887665554422 256899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+..|+..+.+... ..++|+++|+||+|.
T Consensus 80 V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 80 VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 9999999999999999999987543 235789999999995
No 43
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=1.1e-29 Score=161.08 Aligned_cols=117 Identities=20% Similarity=0.335 Sum_probs=102.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+...+.++.+.++...... .++..+.+.+||++|++++...+..++++++++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVF--RNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEE--ECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence 7999999999999999999999998888889888765443332 23466899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+++..|+..+.+... ...|+++|+||+|.
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl 118 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSW-DNAQVILVGNKCDM 118 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCCEEEEEECccc
Confidence 9999999999999999999876543 47899999999994
No 44
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=1.2e-29 Score=161.20 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=104.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||+++++.+.+...+.++.+.++....... +...+.+.+||++|++.+...+..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT--NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCCChhhccccHHHhcCCCEEEE
Confidence 58999999999999999999998888888899988776555533 4467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|||++++++|..+..|+..+.+... +.|+++||||+|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~ 117 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIK 117 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcc
Confidence 9999999999999999999987654 89999999999953
No 45
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1.3e-29 Score=160.06 Aligned_cols=116 Identities=28% Similarity=0.428 Sum_probs=106.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
||+++|++|||||||++++.++.+...+.++.|.+........ ++..+.+.+||++|++.+...+..++++++++++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI--DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE--TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999988876666654 36889999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||+++++||+++..|++.+..... .++|++|+|||+|.
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~ 116 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDL 116 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTG
T ss_pred cccccccccccccccccccccccc-ccccceeeeccccc
Confidence 999999999999999999988766 57999999999993
No 46
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=2.1e-29 Score=160.50 Aligned_cols=119 Identities=26% Similarity=0.409 Sum_probs=104.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-cchHHhhccCcEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-SVWPAFQRDVHGI 80 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~ 80 (135)
.+||+++|++|||||||++++..+.+...+.++.+.++....... ++..+.+++||++|+++++ .++..+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI--DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE--CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEE
Confidence 479999999999999999999999988888888887765544433 4467899999999999886 5788899999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++|||++++++|..+..|+..+.......++|+++|+||+|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 121 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL 121 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 999999999999999999999987665568999999999994
No 47
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=2.4e-29 Score=159.76 Aligned_cols=118 Identities=19% Similarity=0.354 Sum_probs=103.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|+|||||++++.+..+...+.++.+.++....... ++..+.+++||++|++.+...+..+++++|+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~--~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL--DGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE--CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 589999999999999999999999998888899988665444432 346689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.+... .+.|+++||||+|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl 120 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHAS-EDVERMLVGNKCDM 120 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence 99999999999999999999977543 47899999999995
No 48
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.9e-29 Score=161.40 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=99.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||+.++.++.+...+.|+.+..+ .... ..++..+.+.+||++|++.+...+..++++++++++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANV--MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEE--EECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEE
Confidence 7999999999999999999999999888889986433 2222 334577899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||+++++||+++. .|+..+.... ++.|+++||||+|.
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl 117 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL 117 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhh
Confidence 99999999999995 6998886653 47999999999995
No 49
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=2.6e-29 Score=163.80 Aligned_cols=117 Identities=21% Similarity=0.392 Sum_probs=103.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.+|.+.++...... .++..+.+.+||++|++.+...+..+++++++++
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE--INGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEE--ECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 47999999999999999999999988888889998776544443 2346678999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.... ...|+++||||+|.
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl 122 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDD 122 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence 9999999999999999999987654 37899999999994
No 50
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.7e-29 Score=161.69 Aligned_cols=114 Identities=23% Similarity=0.388 Sum_probs=99.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++..+.+. .+.||++.++..... ..+.+.+||++|+++++.++..+++++++++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~------~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTY------KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEE------CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 479999999999999999999877764 467888877654443 4688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++++++..|+..+.+.....++|++||+||+|.
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 99999999999999999988876544457999999999995
No 51
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=3.8e-29 Score=158.58 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=103.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+.++....... ++..+.+++||++|++++...+..+++++++++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence 479999999999999999999999888888888887665554433 346788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|.++..|+..+.+... .+.|+++|+||+|.
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~~~iiv~nK~Dl 119 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDL 119 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEEEEEEChhc
Confidence 99999999999999999999876542 47899999999994
No 52
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.7e-29 Score=159.41 Aligned_cols=114 Identities=24% Similarity=0.386 Sum_probs=98.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|.++||||||++++..+.+. .+.||.+.++..+.. ..+.+.+||++|+++++.++..++++++++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 58999999999999999999887776 477888876543332 46889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|||++++.+|+++..|+..+.......+.|++|++||+|..
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 99999999999999988888655444578999999999953
No 53
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=4e-29 Score=159.04 Aligned_cols=119 Identities=20% Similarity=0.337 Sum_probs=103.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|+++||||||++++.++.+...+.++.+.++...... .++..+.+++||++|+++++.++..+++.+++++
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE--VDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEE--ECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 47999999999999999999999988887788888766544443 3457789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+.++..... ..++|+++|+||+|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDI 126 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccc
Confidence 99999999999999999998876543 246899999999995
No 54
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.8e-29 Score=162.44 Aligned_cols=114 Identities=23% Similarity=0.383 Sum_probs=99.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|+++||||||++++..+.+. .+.||.+.++..... ..+.+++||++|+++++.++..++++++++|
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~------~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEE------CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 479999999999999999999987775 467888877654333 5689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++++++.++..|+.++.......++|++||+||+|.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl 130 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCC
Confidence 99999999999999888888866544458999999999994
No 55
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=2e-29 Score=160.45 Aligned_cols=114 Identities=23% Similarity=0.393 Sum_probs=98.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|+++||||||++++..+.+. .+.||.+.++..... ..+.+++||++|+++++..+..+++++++++
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTY------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 579999999999999999999987764 467888876643332 4688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+++..|+.++.+.....++|++||+||+|.
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 122 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDL 122 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCC
Confidence 99999999999999998888876544457899999999995
No 56
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.6e-29 Score=162.65 Aligned_cols=114 Identities=23% Similarity=0.318 Sum_probs=99.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
||+++|++|||||||++++.++.++..+.||.+..+.. ....++..+.+++||++|++.+..++..++++++++++|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~---~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv 78 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH---DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLC 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE---EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEE
Confidence 89999999999999999999999988888998876532 222345678999999999999999999999999999999
Q ss_pred EeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||++++++|+.+. .|+..+.... ++.|+++||||+|.
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl 116 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDL 116 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence 9999999999996 6999987654 37999999999995
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.8e-29 Score=157.66 Aligned_cols=118 Identities=20% Similarity=0.323 Sum_probs=102.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|+|||||++++.++.+...+.++.+.++....... ++..+.+++||+||++.+...+..+++.+|+++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI--EGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE--CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 589999999999999999999998888878888877654444432 335678999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+..... .++|+++|+||+|.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl 120 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGA-SNVVLLLIGNKCDL 120 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence 99999999999999999999976543 47899999999995
No 58
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=6.9e-29 Score=157.22 Aligned_cols=118 Identities=19% Similarity=0.323 Sum_probs=103.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|+++||||||++++.++.+...+.++.+.++....... ++..+.+++||++|++++..++..+++++++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI--DGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 479999999999999999999999888788899988776655543 346688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl 120 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDL 120 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence 99999999999999999999877653 36899999999995
No 59
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=5.7e-29 Score=157.40 Aligned_cols=117 Identities=19% Similarity=0.313 Sum_probs=100.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+...+.++.+..+ ... ...++..+.+.+||++|++++..++..+++.++++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQ--IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEE--EEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence 5899999999999999999999888877777776433 222 2334467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+..|...+.+.....+.|+++|+||+|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl 117 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL 117 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 9999999999999999998877655557899999999995
No 60
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=3.4e-29 Score=162.24 Aligned_cols=116 Identities=22% Similarity=0.335 Sum_probs=99.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
||+++|++|||||||++++..+.+...+.++.+..+.. . ...++..+.+++||++|+++++.++..++++++++++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-Q--VVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-E--EEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEE
Confidence 68999999999999999999988888888888765422 1 22334678899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~ 122 (135)
||+++.++|+.+..|+..+..... ..+.|+++||||+|.
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl 118 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhc
Confidence 999999999999999998876543 247899999999995
No 61
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=8.3e-29 Score=156.27 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=102.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+...+.++.+..+....... ++..+.+++||++|++.+...+..++++++++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV--GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE--CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999999988888888887766555543 3467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|..+..|+..+..... +++|+++++||+|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~ 117 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALAS-PNIVVILVGNKSDL 117 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhc
Confidence 9999999999999999998865543 57999999999994
No 62
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=4.9e-29 Score=162.36 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=100.0
Q ss_pred ECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCC
Q psy10117 8 LGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSG 87 (135)
Q Consensus 8 iG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 87 (135)
+|++|||||||+++++.+.+...+.+|+|.++....+.. ++..+.++|||++|+++|+.++..||++++++++|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~--~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE--CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence 699999999999999999888888999998877665543 346789999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 88 VPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 88 ~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++||+.+..|+.++.+.. .++|+++||||+|.
T Consensus 79 ~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl 111 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDV 111 (200)
T ss_pred ChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence 9999999999999998764 37999999999994
No 63
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=8.5e-29 Score=156.59 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=102.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcC--CCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDL--TTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
+||+++|++|||||||++++... .++..+.++.+.++........ .+..+.+.+||++|++.+..++..+++++|++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 79 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVD-TDNTVELFIFDSAGQELYSDMVSNYWESPSVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeC-CCCEEEEEEEECCCHHHHHHHHHHHhCCCCEE
Confidence 58999999999999999999864 6778888999888765555443 45678999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++|||++++++|..+..|+..+.... .+.|+++|+||+|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl 119 (164)
T cd04101 80 ILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence 99999999999999999999987654 47899999999995
No 64
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=1.2e-28 Score=155.76 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=101.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|+|||||+++++++.+...+.++.+..+. ... ..++..+.+++||+||++++..++..+++++++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQC--EIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFL 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE-EEE--EECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEE
Confidence 479999999999999999999998887777788775432 222 23346688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.+.....+.|+++++||+|.
T Consensus 79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl 119 (164)
T cd04145 79 LVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccc
Confidence 99999999999999999999887655558999999999994
No 65
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=1.1e-28 Score=162.77 Aligned_cols=118 Identities=17% Similarity=0.306 Sum_probs=105.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+++|.+..+...+.++.+.++....... ++..+.+++||++|++++..++..+++++++++
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV--EGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 479999999999999999999999888888899998876665544 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+..... .++|+++|+||+|.
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~Dl 129 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHAD-SNIVIMMAGNKSDL 129 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEEChhc
Confidence 99999999999999999999876543 47999999999995
No 66
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=1.5e-28 Score=156.37 Aligned_cols=118 Identities=22% Similarity=0.318 Sum_probs=103.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
-+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||++|++++..+...+++++++++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 479999999999999999999999888888888888766555543 345678999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|..+..|+.++.+... ++.|+++|+||.|.
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pvivv~nK~Dl 121 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSN-SNMTIMLIGNKCDL 121 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence 99999999999999999999977543 57999999999995
No 67
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.4e-28 Score=159.06 Aligned_cols=117 Identities=20% Similarity=0.344 Sum_probs=102.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+...+.++.+.++....... ++..+.+.+||++|++.+...+..++++++++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI--ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence 58999999999999999999999988778889887665444433 3457899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+++..|+.++..... ...|++++|||+|.
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl 117 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDL 117 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCC
Confidence 9999999999999999999976543 36899999999994
No 68
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=9.6e-29 Score=157.15 Aligned_cols=112 Identities=23% Similarity=0.415 Sum_probs=98.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
+|+++|++|||||||++++.+. +...+.||.|.+...+.. ..+.+++||++|++.++.++..++++++++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRL------DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEE------CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence 4899999999999999999976 667788998876543333 468899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||++++++|+++..|+..+.+.....+.|+++|+||+|.
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 112 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDK 112 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCC
Confidence 999999999999999999987655568999999999994
No 69
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=1e-28 Score=156.60 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=97.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
.|+++|++|||||||++++.++.+...+.||.+.+..... ...+++.+||++|+++++.++..++++++++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~------~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIP------TQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEe------eCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 3799999999999999999998888888899887543222 2568999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||.+++.+|..++.|+.++.... .++|+++|+||+|.
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl 111 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDL 111 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCC
Confidence 99999999999999999986543 47999999999994
No 70
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=1.1e-28 Score=157.04 Aligned_cols=112 Identities=23% Similarity=0.386 Sum_probs=98.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
||+++|+++||||||++++.+..+. .+.||.+.++..+.. ..+.+.+||+||++.++..+..++++++++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~------~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEY------KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEE------CCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence 6899999999999999999998665 477888877654333 568999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||++++++|+++..|+.++.+.....+.|+++|+||+|.
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 112 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDV 112 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCc
Confidence 999999999999999999976654457899999999995
No 71
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=1.6e-28 Score=161.82 Aligned_cols=112 Identities=18% Similarity=0.266 Sum_probs=97.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|.+|||||||++++..+.+.. +.+|++..+..... ..+.+.+||++|++.|+.++..++++++++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~------~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW------GPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe------eEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 589999999999999999999998864 57888876654433 46789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+++..|+..+.+.. ..+.|+++||||+|.
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL 112 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDL 112 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccc
Confidence 999999999999999888876543 347899999999995
No 72
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=1.9e-28 Score=154.56 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=102.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|+++||||||++++.+..+...+.++.+.++....... ++..+.+++||+||++++..++..++++++++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL--EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 48999999999999999999999888788888887766655543 3456789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+..|+..+..... .+.|+++++||+|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~ 117 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDL 117 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhc
Confidence 9999999999999999999876544 37999999999995
No 73
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=2.3e-28 Score=154.99 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=99.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+.. .. ..+...+.+++||++|++++..++..+++.+++++
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VI--SCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 77 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEE-EE--EECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE
Confidence 3799999999999999999999998887788887754422 11 22346788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+++..|+..+..... ..++|+++|+||+|.
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (165)
T cd04140 78 LVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDE 120 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccc
Confidence 99999999999999999887765432 247899999999995
No 74
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1.2e-28 Score=158.77 Aligned_cols=114 Identities=23% Similarity=0.411 Sum_probs=98.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++..+.+.. +.||.+.++..+.. ..+.+++||++|+++++.++..+++++++++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEY------KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 4799999999999999999998877754 67888876654332 5688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+++..++.++.......+.|++||+||+|.
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 99999999999999888888765443457899999999995
No 75
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=2.5e-28 Score=158.38 Aligned_cols=116 Identities=17% Similarity=0.290 Sum_probs=100.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+||+++|++|||||||++++.++.+.. .+.++.+..+...... .++..+.+++||++|++++..++..+++++++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ii 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMV--VGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAI 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEE--ECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEE
Confidence 589999999999999999999988864 6788888766444443 3456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+++..|+..+.... .+.|+++|+||+|.
T Consensus 79 lv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl 117 (193)
T cd04118 79 VCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDL 117 (193)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccc
Confidence 9999999999999999999987653 37899999999994
No 76
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=2.1e-28 Score=157.98 Aligned_cols=116 Identities=21% Similarity=0.282 Sum_probs=98.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+...+.++.+.++... .. ..++..+.+.+||++|++++...+..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~-~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 78 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQ-GPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLI 78 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EE-ecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEE
Confidence 4899999999999999999999999888888887765332 21 122567899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||+++++||+++. .|+..+.... ++.|+++||||+|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 117 (187)
T cd04132 79 CYAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDL 117 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhh
Confidence 99999999999995 6998886543 37899999999994
No 77
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=4.6e-28 Score=153.06 Aligned_cols=119 Identities=19% Similarity=0.327 Sum_probs=104.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||+++++++.+...+.++.+..+....... +...+.+.+||++|++++...+..+++++++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 78 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL--DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence 589999999999999999999999887777888887665555543 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|||++++++|+.+..|+..+..... ...|+++++||+|..
T Consensus 79 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~ 119 (163)
T cd01860 79 VVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLE 119 (163)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc
Confidence 99999999999999999999877654 579999999999953
No 78
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=2.9e-28 Score=153.70 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=91.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||+.++..+.+.+.+.|+.+ .+ ... ...++..+.+.+||++|++. ..++++++++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~--i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKE--VLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEE--EEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEE
Confidence 5899999999999999999999888776655533 22 122 23345678899999999875 356789999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||+++++||+++..|+.++.+.....++|+++||||+|.
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 9999999999999999999988765567999999999984
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=5.5e-28 Score=152.48 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=103.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV--DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE--CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence 58999999999999999999998887777888887665444433 3466889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+..|+..+.++....+.|+++|+||+|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~ 118 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDK 118 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcc
Confidence 9999999999999999999988776678999999999995
No 80
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=4.3e-28 Score=153.15 Aligned_cols=117 Identities=23% Similarity=0.400 Sum_probs=102.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+++||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV--DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEE
Confidence 58999999999999999999998887778888887665544433 3456789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++.+++.+..|+..+..+.. +++|+++|+||+|.
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~ 117 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDL 117 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhc
Confidence 9999999999999999999877654 48999999999994
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=5.6e-28 Score=156.63 Aligned_cols=117 Identities=21% Similarity=0.381 Sum_probs=100.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+||+++|++|||||||++++.++.+. ..+.++.+.++...... .++..+.++|||+||++++...+..+++++++++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVT--VDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEE--ECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEE
Confidence 58999999999999999999998875 35777887765543332 2346789999999999999998999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+++..|+..+..... .++|+++|+||+|.
T Consensus 79 ~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~NK~Dl 118 (191)
T cd04112 79 LLYDITNKASFDNIRAWLTEIKEYAQ-EDVVIMLLGNKADM 118 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccc
Confidence 99999999999999999999977543 47899999999995
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=4e-28 Score=154.91 Aligned_cols=113 Identities=20% Similarity=0.327 Sum_probs=97.0
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEE
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF 84 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (135)
|+++|++|||||||++++.++.+...+.++....+. .....++..+.+.+||++|++.+..++..++++++++++||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS---ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee---EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEE
Confidence 589999999999999999999988888788765432 22233456789999999999999999999999999999999
Q ss_pred eCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 85 NSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 85 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|+++++||+++. .|+..+.... ++.|+++||||+|.
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl 114 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDL 114 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhh
Confidence 999999999995 6999987654 37999999999994
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=7.7e-28 Score=153.00 Aligned_cols=118 Identities=21% Similarity=0.336 Sum_probs=102.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+ .... ..++..+.+++||++|+++|..++..+++.+++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v 77 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQV--EIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL 77 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEE--EECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE
Confidence 47999999999999999999999998888888887543 2222 23346689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|...+.+.....+.|+++++||+|.
T Consensus 78 lv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~ 118 (168)
T cd04177 78 LVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADL 118 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhc
Confidence 99999999999999999999876555558999999999994
No 84
>KOG0081|consensus
Probab=99.96 E-value=8.7e-31 Score=160.01 Aligned_cols=119 Identities=25% Similarity=0.374 Sum_probs=110.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeee-------cCCceEEEEEEecCCCcccccchHHhhc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA-------LDTSKTEIELWDTSGDHKFESVWPAFQR 75 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 75 (135)
+|.+.+|++||||||++.++..+++......|+|+++.+...-+. ..+..+.+++|||.|+|+|+++...||+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999988776662 2457799999999999999999999999
Q ss_pred cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 76 DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 76 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+|-+++++||+++.+||-+++.|+.++..+...+++-++++|||+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~D 135 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKAD 135 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccc
Confidence 9999999999999999999999999999988888999999999999
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=5.7e-28 Score=161.86 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=99.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||+++++++.+...+.+|++. ++.... ..++..+.++|||++|++.|..++..++.++|++++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d-~~~k~~--~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED-FHRKLY--SIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH-hEEEEE--EECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 58999999999999999999999998888888863 222222 234567899999999999998888889999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhcc--------CCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQS--------DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~--------~~~~~p~ivv~nK~D~ 122 (135)
|||+++++||+++..|++++.... ...+.|+++|+||+|.
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl 125 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADR 125 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccc
Confidence 999999999999999999987542 2247899999999995
No 86
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=6.2e-28 Score=154.14 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=97.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+|++++|++|+|||||+.++.++.+...+.+|... .+... ...++..+.+++||++|++++..++..++++++++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-NFSVV--VLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEE--EEECCEEEEEEEEECCCChhhccccccccCCCcEEEE
Confidence 58999999999999999999998888888887643 33333 2334467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+++ ..|+..+.... ++.|++++|||+|.
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 116 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADL 116 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhh
Confidence 9999999999998 47998886543 36899999999995
No 87
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.2e-27 Score=152.34 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=99.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+||+++|++|||||||++++.++.+. ..+.||.+.++....... ++..+.+.+||++|++.+..++..+++++|+++
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~--~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV--YGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE--CCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 79999999999999999999999988 888999988765444333 346688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+... .++|+++|+||+|.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl 120 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADL 120 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccc
Confidence 999999999999999999876322 36899999999995
No 88
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=1.1e-27 Score=154.39 Aligned_cols=119 Identities=23% Similarity=0.326 Sum_probs=100.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++..+.+... .||.+.+........ .+...+.+++||++|+++++.++..+++++++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSL-GNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeec-cCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 47999999999999999999998877644 577776665544432 2335689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++++.+..|+.++.......+.|+++|+||+|.
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~ 121 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDL 121 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCc
Confidence 99999999999999999998877655457999999999995
No 89
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.1e-27 Score=152.92 Aligned_cols=114 Identities=22% Similarity=0.378 Sum_probs=97.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.+..+ ..+.+|.+.....+.. ..+.+.+||++|++.++.++..+++++++++
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~------~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEY------EGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 47899999999999999999998744 4567887765544433 3578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|.++..|+..+.+.....+.|+++|+||+|.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL 127 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccc
Confidence 99999999999999999988876544458999999999995
No 90
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=2.3e-27 Score=150.95 Aligned_cols=118 Identities=26% Similarity=0.443 Sum_probs=100.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.+..+...+.++.+.++...... .++..+.+++||+||++.+..++..++++++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVT--VDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEE--ECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEE
Confidence 5899999999999999999999988777778888766544443 33467889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~ 122 (135)
+||++++++|+++..|...+..... ..+.|+++|+||+|.
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL 121 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccc
Confidence 9999999999999999887765433 237899999999995
No 91
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.2e-27 Score=150.85 Aligned_cols=113 Identities=23% Similarity=0.369 Sum_probs=96.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLT-TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+|+++|++|||||||++++.+.. ....+.||.+.....+.. ..+.+++||+||+++++..+..++++++++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEK------GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEE------CCEEEEEEECCCCHhhHHHHHHHHccCCEEEE
Confidence 58999999999999999999875 355678888865544332 56789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~ 122 (135)
|+|.+++.+|..+..|+..+.+... ..+.|+++|+||+|.
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl 116 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDL 116 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccc
Confidence 9999999999999999998876432 247999999999995
No 92
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=2.4e-27 Score=155.73 Aligned_cols=118 Identities=21% Similarity=0.310 Sum_probs=102.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++++.++....... ++..+.+++||++|++.+..++..+++++++++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~--~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI--DNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE--CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 479999999999999999999999888778888888765544433 345678999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+..... .++|+++++||+|.
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~-~~~piiiv~nK~Dl 123 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDL 123 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccC
Confidence 99999999999999999998866543 47999999999995
No 93
>KOG0088|consensus
Probab=99.95 E-value=2.9e-29 Score=153.29 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=104.3
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
++||++++|+.-||||||+-++...+|....-+|....+...... .++....++||||.|+++|..+-+.||++.+++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n--~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVN--VEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccc--cccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 579999999999999999999999999877666666555444443 344788999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
++|||++|.+||..++.|..++....+ ..+.+++||||.|
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiD 129 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKID 129 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCccc
Confidence 999999999999999999999988776 4789999999999
No 94
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=3e-27 Score=153.94 Aligned_cols=118 Identities=16% Similarity=0.264 Sum_probs=95.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc--------hHHhh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV--------WPAFQ 74 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~ 74 (135)
+||+++|++|||||||++++.++.+...+.|+.+.+.+..... .++..+.+++||++|.+.+... ...++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~--~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~ 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVV--LSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEE--ECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh
Confidence 5899999999999999999999998888888887655433332 2346788999999997654221 23457
Q ss_pred ccCcEEEEEEeCCCcchHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q psy10117 75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQS--DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D~ 122 (135)
+.+|++++|||+++++||+.+..|++.+.+.. ...++|+++||||+|.
T Consensus 79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl 128 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ 128 (198)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccc
Confidence 89999999999999999999999999987754 2357999999999995
No 95
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=1.8e-27 Score=150.79 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=95.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-cccchHHhhccCcEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FESVWPAFQRDVHGIIF 82 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~~i~ 82 (135)
||+++|++|||||||+++++++.+...+.++.+..+ .... ..++..+.+++||++|++. +......+++.+|++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQV--TIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEE--EECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEE
Confidence 689999999999999999999888777777775433 2222 2344678899999999985 34567788999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+..|+..+..... ..+.|+++||||+|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 118 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADL 118 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCch
Confidence 9999999999999999988876543 347999999999994
No 96
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=1.4e-27 Score=152.90 Aligned_cols=114 Identities=31% Similarity=0.487 Sum_probs=102.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|+.||||||+++++..+... .+.||.|.+...+.. ..+.+.+||.+|+..++..|..|+++++++|
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~------~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY------KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE------TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred EEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee------CcEEEEEEeccccccccccceeeccccceeE
Confidence 579999999999999999999986543 478999988877776 6788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||+|.++.+.+.+....+.++.......+.|+++++||+|.
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~ 127 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDL 127 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTS
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccc
Confidence 99999999999999999999888766678999999999994
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=4.8e-27 Score=147.94 Aligned_cols=118 Identities=18% Similarity=0.318 Sum_probs=100.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|+|||||++++.++.+...+.++.+..+....... .+..+.+++||++|++.+...+..++++++++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI--GGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE--CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEE
Confidence 58999999999999999999998887666666665544444332 2456789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|||++++++++.+..|++++...... +.|+++|+||+|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piiiv~nK~D~~ 118 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGN-NISLVIVGNKIDLE 118 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEECcccc
Confidence 99999999999999999998766543 79999999999953
No 98
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=3.5e-27 Score=150.86 Aligned_cols=114 Identities=20% Similarity=0.297 Sum_probs=98.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|+|||||++++..+.+.. +.++.+.++..+.. ..+.+.+||+||++.+...+..+++++++++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVY------KNIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEE------CCeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 4789999999999999999999887764 56888876654443 4688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|+|.++++++..+..|+..+.+.....+.|+++++||+|.
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 99999999999999888888876655557999999999995
No 99
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=7e-27 Score=153.63 Aligned_cols=118 Identities=22% Similarity=0.367 Sum_probs=98.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+ ..+.++.+.++....... ++..+.+.+||++|++++..++..+++++++++
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTV--GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEE--CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 58999999999999999999998776 456788887665444433 335688999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHH-HHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLL-FYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|..+.. |...+.......+.|+++|+||+|.
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 9999999999999965 7776655444457899999999995
No 100
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=4.7e-27 Score=150.11 Aligned_cols=116 Identities=24% Similarity=0.358 Sum_probs=98.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+.||+++|++|||||||++++.++.++..+.++.+..+.. . ...++..+.+.+||++|++.+...+..++.++++++
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-D--IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 77 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-E--EEECCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence 4699999999999999999999999888888888765432 2 223446788999999999999888888999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+. .|+..+.... .+.|+++|+||+|.
T Consensus 78 ~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 117 (175)
T cd01870 78 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDL 117 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhc
Confidence 999999999999984 6888886543 37899999999994
No 101
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=5.6e-27 Score=149.61 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=97.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|+|||||++++.++.+...+.++.+..+ . .....++..+.+++||++|++.+...+..++++++++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-A--VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-E--EEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence 5899999999999999999999988777777765432 2 222334567889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+. .|+..+... .++.|+++||||+|.
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl 116 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDL 116 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhh
Confidence 99999999999995 688888655 358999999999994
No 102
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=6.4e-27 Score=147.45 Aligned_cols=113 Identities=20% Similarity=0.387 Sum_probs=96.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
+|+++|++|||||||++++.++.+.. ..||.+.++..... +..+.+.+||++|++.+...+..++++++++++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQL-----EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEe-----CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999987754 46777765433332 2457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|++++.++..+..|+.++.+.....+.|+++|+||+|.
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccc
Confidence 999999999999999998876654458999999999995
No 103
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=1.2e-26 Score=153.49 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=95.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhc-cCcEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR-DVHGI 80 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~~ 80 (135)
+||+++|++|||||||++++..+.+. ..+.++.+.+++...... ++..+.+.+||++|++. .....+++ ++|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~--~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV--DGEESTLVVIDHWEQEM--WTEDSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE--CCEEEEEEEEeCCCcch--HHHhHHhhcCCCEE
Confidence 58999999999999999999988876 667777764544444433 33678899999999982 33455667 99999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl 118 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDL 118 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhc
Confidence 999999999999999999999877655558999999999994
No 104
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.3e-26 Score=150.63 Aligned_cols=118 Identities=20% Similarity=0.266 Sum_probs=91.4
Q ss_pred eEEEEEECCCCCChHHHHH-HHhcCC-----CCCCccCCcce-eEEEEEe------eeecCCceEEEEEEecCCCccccc
Q psy10117 2 KIKILILGPIMAGKTVLAN-ALCDLT-----TAEEYHPTQGV-RIVECEH------SYALDTSKTEIELWDTSGDHKFES 68 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~-~l~~~~-----~~~~~~~t~~~-~~~~~~~------~~~~~~~~~~~~i~d~~g~~~~~~ 68 (135)
.+||+++|++|||||||+. ++.++. +...+.||++. +.+.... ....++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999995 665443 34567888863 2222111 012345789999999999875 3
Q ss_pred chHHhhccCcEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 69 VWPAFQRDVHGIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+...+|++++++++|||+++++||+++. .|++.+.... ++.|+++||||+|..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~ 133 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLR 133 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcc
Confidence 4567899999999999999999999996 6999987654 378999999999953
No 105
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=1.9e-26 Score=151.98 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=103.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||+++++.+.+...+.+|.+.++...... .+...+.+++||++|++.+...+..++..+++++
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFY--TNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEE--ECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 58999999999999999999888888888999999877665543 3446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++..+|..+..|+..+.... .++|+++++||+|.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl 125 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDV 125 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccC
Confidence 9999999999999999999987654 47999999999994
No 106
>KOG0070|consensus
Probab=99.95 E-value=1.4e-27 Score=149.20 Aligned_cols=114 Identities=25% Similarity=0.408 Sum_probs=106.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+++|+++|..++||||+++++..++...+ .||+|.+...+.. ..+++++||.+|+++++..|..||++.+++|
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y------kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY------KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE------cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 68999999999999999999999887665 8999999888887 5889999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||+|.+|++.+.+++.-+..+..+..+.+.|+++++||+|.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~ 130 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDL 130 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhc
Confidence 99999999999999999988888887789999999999993
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.7e-26 Score=146.57 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=92.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++..+.++..+.++.. . ........+..+.+++||++|++.+...+..+++.++++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E---ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c---eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEE
Confidence 4899999999999999999999988765443322 1 12222233467899999999999888888888999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+. .|+..+..... +.|+++|+||+|.
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~~--~~pviiv~nK~Dl 115 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLGV--KVPIILVGNKSDL 115 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEEchhc
Confidence 99999999999984 68888866543 7999999999995
No 108
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3.3e-26 Score=145.35 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=100.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+.+.+.++.+.++....... .+..+.+.+||++|++.+...+..+++.+++++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI--KGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 379999999999999999999988877777788876654444433 346678999999999999998899999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+.++..... .+.|+++|+||+|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~~i~v~NK~D~ 124 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYAN-NKVITILVGNKIDL 124 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence 99999999999999999998865443 36899999999995
No 109
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=2.2e-26 Score=145.23 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=101.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++....+...+.++.+..+.. . ...++..+.+.+||++|++.+...+..+++.++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-K--VVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEE-E--EEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence 589999999999999999999998887777887654432 1 2334467899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+||++++.+|..+..|+..+.+.....+.|+++|+||+|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~ 117 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDL 117 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccc
Confidence 9999999999999999999987655558999999999995
No 110
>KOG0395|consensus
Probab=99.95 E-value=3.9e-27 Score=152.64 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=110.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+|++++|.+|||||+|..++.++.+...|.||++. .+......++....+.|+|++|++.+..+...+++++++++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied---~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIED---SYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL 79 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccc---cceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEE
Confidence 589999999999999999999999999999999994 33333334478899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC---Ccccccc
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG---RGDSSGH 129 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~---~~~~~~~ 129 (135)
+||++++++||+.+..+.++|.+......+|+++||||+|. +.++.++
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~ee 130 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEE 130 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHH
Confidence 99999999999999999999977777778999999999994 3555544
No 111
>KOG0073|consensus
Probab=99.95 E-value=8.9e-27 Score=142.79 Aligned_cols=114 Identities=24% Similarity=0.402 Sum_probs=104.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+++|+++|..++||||++++|.+.. .....||.|.++.+... ..+.+++||.+||..+++.|..||..+||+|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~------~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY------KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe------cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 6899999999999999999999854 67788999999888887 7889999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|+|.+|+..|++...-+..+.........|++|++||+|.
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl 129 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDL 129 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcC
Confidence 99999999999999888888887777778999999999994
No 112
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2.1e-26 Score=144.91 Aligned_cols=112 Identities=27% Similarity=0.389 Sum_probs=97.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
||+++|++|||||||++++++.. ...+.++.+........ ..+.+.+||+||++.+...+..++++++++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY------KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE------CCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence 68999999999999999999987 34566777776555443 467899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||+++++++..+..|+..+.......+.|+++|+||+|.
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 112 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDL 112 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCC
Confidence 999999999999999998877655568999999999994
No 113
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.7e-26 Score=148.90 Aligned_cols=114 Identities=24% Similarity=0.332 Sum_probs=96.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+. .+.||.+........ ..+++.+||++|++.++..+..+++++++++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAI------GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 479999999999999999999987654 345666654433333 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|+|+++++++.....|+.++.+.....+.|+++|+||+|.
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 99999999999999999988876554457999999999995
No 114
>KOG0083|consensus
Probab=99.95 E-value=4.1e-29 Score=148.79 Aligned_cols=125 Identities=20% Similarity=0.341 Sum_probs=106.7
Q ss_pred EEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEE
Q psy10117 6 LILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF 84 (135)
Q Consensus 6 ~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (135)
+++|++++|||+|+-++..+.+. ....+|+|+++...-+ ..++.++++++||+.|||+|++....||+++|+++++|
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli--~~~~~kvklqiwdtagqerfrsvt~ayyrda~alllly 78 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLI--DMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLY 78 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeecccccee--ccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeee
Confidence 37899999999999998888765 4577888987665554 44568999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC---CCcccccccccc
Q psy10117 85 NSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP---GRGDSSGHAHSL 133 (135)
Q Consensus 85 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D---~~~~~~~~l~~l 133 (135)
|+.+..||++++.|+.+|..+.. ..+.++++||||| ++.+.+++-++|
T Consensus 79 diankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kl 129 (192)
T KOG0083|consen 79 DIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKL 129 (192)
T ss_pred ecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHH
Confidence 99999999999999999988766 5789999999999 356666554443
No 115
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=1.9e-26 Score=150.29 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=98.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
||+++|++|||||||+++++++.+...+.++... +..... ...+..+.+++||++|+..+..++..+++++|++++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~--~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEY--EVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEE--EECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEE
Confidence 6899999999999999999999887777777642 222222 2234668999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 999999999999999999887665557999999999995
No 116
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.95 E-value=3.1e-26 Score=137.99 Aligned_cols=114 Identities=23% Similarity=0.360 Sum_probs=83.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
||+|+|++|||||||+++|++.... ..+.+..+.++..... ........+.+||++|++.+...+..++..+|+++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVI--VVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEE--EETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEE--EecCCceEEEEEecCccceecccccchhhcCcEEE
Confidence 7999999999999999999998776 1122222322221111 12224445999999999999888888899999999
Q ss_pred EEEeCCCcchHHHHHH---HHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLL---FYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+|||++++++|+++.. |+..+..... ++|+++||||.|
T Consensus 79 lv~D~s~~~s~~~~~~~~~~l~~~~~~~~--~~piilv~nK~D 119 (119)
T PF08477_consen 79 LVYDLSDPESLEYLSQLLKWLKNIRKRDK--NIPIILVGNKSD 119 (119)
T ss_dssp EEEECCGHHHHHHHHHHHHHHHHHHHHSS--CSEEEEEEE-TC
T ss_pred EEEcCCChHHHHHHHHHHHHHHHHHccCC--CCCEEEEEeccC
Confidence 9999999999988744 5666654433 699999999998
No 117
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=3.4e-26 Score=143.16 Aligned_cols=117 Identities=26% Similarity=0.409 Sum_probs=102.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|+++||||||++++.+..+...+.++.+.++....... +...+.+.+||+||++.+...+..++++++++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI--DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE--CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence 58999999999999999999999988877888887766655543 2466889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|+|++++++++.+..|+..+..... ...|+++++||+|.
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~ 117 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDL 117 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccc
Confidence 9999999999999999999877653 47899999999996
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=2e-26 Score=145.12 Aligned_cols=113 Identities=21% Similarity=0.320 Sum_probs=93.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
||+++|+++||||||++++..+.+. .+.||++.++..... ..+.+++||+||++.++.++..+++.++++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTY------KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEE------CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 6899999999999999999887765 356777776544332 457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|++++.++.....|+..+.+.....+.|+++|+||+|..
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 9999988888877777666554444579999999999953
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=2.2e-26 Score=145.94 Aligned_cols=113 Identities=26% Similarity=0.426 Sum_probs=95.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC------CCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT------AEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDV 77 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 77 (135)
+|+++|++|||||||++++.+... ...+.+|.+.++..+.. ....+.+||+||++.+..++..+++.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 74 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV------GNARLKFWDLGGQESLRSLWDKYYAEC 74 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE------CCEEEEEEECCCChhhHHHHHHHhCCC
Confidence 589999999999999999986432 23456777776655444 367999999999999999999999999
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 78 HGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 78 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++++|+|.++++++..+..|+..+.+.....+.|+++++||+|.
T Consensus 75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 75 HAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred CEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 999999999999999999999998877655568999999999994
No 120
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=4.3e-26 Score=142.82 Aligned_cols=113 Identities=21% Similarity=0.404 Sum_probs=99.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
.|+++|++|||||||++++.+..+...+.|+.+.++..... ..+.+.+||++|++.++..+..+++.++++++|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 74 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTK------GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYV 74 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEE------CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999988888999887654433 347899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|+++..++.....|+.++.......+.|+++|+||+|.
T Consensus 75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 113 (159)
T cd04159 75 VDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDL 113 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 999999999988888888876554457899999999995
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=6e-26 Score=145.67 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=99.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+.||+++|++|+|||||++++.+..+...+.++.+..+.. .. ..++..+.+.+||+||++++...+..++..+++++
T Consensus 1 ~~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 77 (180)
T cd04137 1 QRKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSK-II--RYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI 77 (180)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEE-EE--EECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE
Confidence 3699999999999999999999988877777777654321 12 22335678899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++||+++..+|+.+..|...+.+.....+.|+++++||+|.
T Consensus 78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 118 (180)
T cd04137 78 LVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence 99999999999999999988887655557899999999995
No 122
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=8.2e-26 Score=143.67 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=94.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+...+.++....+.. ....++..+.+++||+||++.+......+++.++++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSA---TVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE---EEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEE
Confidence 589999999999999999999998866666666543322 22334567899999999999888888888999999999
Q ss_pred EEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|... ..|+..+..... +.|+++|+||+|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl 116 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCP--NVPIILVGTKIDL 116 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC--CCCEEEEEccHHh
Confidence 9999999999877 568888766544 7999999999993
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=6.5e-26 Score=146.68 Aligned_cols=114 Identities=26% Similarity=0.352 Sum_probs=97.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+. .+.+|.+.....+.. ....+.+||+||++.++..+..+++++++++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTI------GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 478999999999999999999987763 566777765444433 3478999999999999888899999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|+|.++.++|.....|+..+.+.....+.|+++++||+|.
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl 132 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDL 132 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence 99999999999999999998876555557999999999994
No 124
>KOG0393|consensus
Probab=99.94 E-value=2.5e-27 Score=151.33 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=104.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeec-CCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYAL-DTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
.+|++++|+.++|||+|+..+..+.++..|.||+=.++ ...... ++..+.+.+|||.||+.|..++...|.++|.+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny---s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY---SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc---eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 47999999999999999999999999999999987433 333444 47899999999999999998888899999999
Q ss_pred EEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 81 IFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 81 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
++||++.+++||+++ ..|+.++..+.+ +.|+++||+|.|.+
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp--~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP--NVPIILVGTKADLR 122 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC--CCCEEEEeehHHhh
Confidence 999999999999998 789999988875 89999999999976
No 125
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=1.2e-25 Score=145.34 Aligned_cols=116 Identities=25% Similarity=0.367 Sum_probs=96.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+.||+++|++|+|||||++++..+.+...+.++....+.. ....++..+.+.+||++|++.+......+++++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l 77 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT---DCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL 77 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE---EEEECCEEEEEEEEECCCChhccccchhhcCCCCEEE
Confidence 4699999999999999999999888877777776654322 2222346678999999999988887778889999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++||+++.++|+.+. .|+..+.+... +.|+++||||+|.
T Consensus 78 lv~~i~~~~s~~~~~~~~~~~i~~~~~--~~piilvgnK~Dl 117 (187)
T cd04129 78 IGFAVDTPDSLENVRTKWIEEVRRYCP--NVPVILVGLKKDL 117 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEeeChhh
Confidence 999999999999996 69999876543 7999999999995
No 126
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=1.4e-25 Score=141.03 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=98.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
||+++|++|||||||++++.+..+...+.++.+. ...... ..++..+.+++||+||++.+...+..+++.++++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED-SYRKTI--VVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH-eEEEEE--EECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEE
Confidence 6899999999999999999988877777777663 222222 2333568899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
||++++++++++..|...+.........|+++|+||+|.
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 116 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDL 116 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcc
Confidence 999999999999999998877655458999999999995
No 127
>KOG0071|consensus
Probab=99.93 E-value=1.6e-25 Score=134.25 Aligned_cols=126 Identities=21% Similarity=0.354 Sum_probs=110.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+++|+.+|..++||||++..+.-+.. ...-||+|++..+.++ ..+++++||.+|+++.++.|.+||....++|
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty------kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe------eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 57999999999999999999998654 4566999999888887 7899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC-------Cccccccccccc
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG-------RGDSSGHAHSLR 134 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~-------~~~~~~~l~~l~ 134 (135)
||.|..+.+..++++.-+..+.+++...+.|++|.+||+|. ++-+..+++.+|
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r 149 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIR 149 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccccc
Confidence 99999999999999888888888888889999999999993 234445666544
No 128
>KOG0097|consensus
Probab=99.93 E-value=1.3e-25 Score=135.24 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=105.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+|.+++|+-|+|||+|+..+...++-.+-..++|+.+-+..+++ .+.+++++|||+.|+++|+.....||+.+.+.++
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev--sgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV--SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe--cCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 68999999999999999999998888777788998776666644 4589999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++.++++..+..|+.+..+... ++..++++|||.|.
T Consensus 90 vyditrrstynhlsswl~dar~ltn-pnt~i~lignkadl 128 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADL 128 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCC-CceEEEEecchhhh
Confidence 9999999999999999999866544 57899999999993
No 129
>KOG0075|consensus
Probab=99.93 E-value=5.9e-26 Score=137.07 Aligned_cols=114 Identities=23% Similarity=0.445 Sum_probs=106.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++.+.++|..++||||+++.+..+.+.....||.|.+.+.++- ..+.+.+||.+|+.+|+.+|+.|++.+++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tk------gnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTK------GNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEecc------CceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 5789999999999999999999999999999999999887765 7789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+|+|..+++.+...+.-+..+...+....+|++|+|||.|
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d 133 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKID 133 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccccc
Confidence 9999999999988888888888888888999999999999
No 130
>KOG4252|consensus
Probab=99.93 E-value=4.8e-27 Score=146.27 Aligned_cols=127 Identities=20% Similarity=0.379 Sum_probs=111.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
-+|++++|..++||||++++++.+.+..++..++|.++..-+.++. ...+.+.+||++|++.|..+...||++|.+.+
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~--~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVL--IEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhh--HHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 3799999999999999999999999999999999998877666543 36678899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC---CCccccccccc
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP---GRGDSSGHAHS 132 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D---~~~~~~~~l~~ 132 (135)
+||+-+|..||+.+.+|...+.+... .+|.++|-||+| +...+..+.+.
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~--~IPtV~vqNKIDlveds~~~~~evE~ 149 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETE--RIPTVFVQNKIDLVEDSQMDKGEVEG 149 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhc--cCCeEEeeccchhhHhhhcchHHHHH
Confidence 99999999999999999999977765 899999999999 22334444443
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1.8e-24 Score=142.72 Aligned_cols=117 Identities=26% Similarity=0.351 Sum_probs=101.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|+.|||||||++++.++.+...+.++++..+......... ..+++.+||++|+++++.++..|+.+++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYR--RNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCC--CEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 7999999999999999999999999998999988766555554322 27889999999999999999999999999999
Q ss_pred EEeCCCc-chHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVP-GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||.++. .+++....|...+..... ...|+++++||+|.
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl 123 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDL 123 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEeccccc
Confidence 9999994 455666899999877664 46999999999994
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=5.8e-24 Score=135.56 Aligned_cols=114 Identities=23% Similarity=0.369 Sum_probs=95.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.+..+. .+.++.|.+...... ....+.+||++|+..+...+..+++++++++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~------~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQS------DGFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE------CCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 478999999999999999999987553 456777765544443 3468999999999988888899999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|+|+++..++.....|+..+.......++|+++++||+|.
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL 127 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence 99999999999988888887766544457999999999995
No 133
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=4.7e-23 Score=134.71 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=89.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccC-cEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDV-HGIIF 82 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~~i~ 82 (135)
+|+++|++|||||||+++|..+.+..++.++ ..+...+.. ..+.....+.+||+||+++++..+..+++.+ +++||
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~--~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFIL--NSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEe--ecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence 6899999999999999999998776655333 333322222 1113457899999999999999999999998 99999
Q ss_pred EEeCCCc-chHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117 83 VFNSGVP-GHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~ 122 (135)
|+|..+. +++..+..|+..+..... ...+|+++++||+|.
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl 121 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDL 121 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhh
Confidence 9999997 678888777766543321 247999999999994
No 134
>KOG0074|consensus
Probab=99.90 E-value=2.3e-23 Score=125.26 Aligned_cols=114 Identities=24% Similarity=0.422 Sum_probs=102.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|-.++||||+++.|.+. .+...-||.|++...+... ..+++++||.+|+...+..|..||.+.|++|
T Consensus 17 EirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~-----g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYD-----GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeec-----CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 689999999999999999999884 4566779999988777663 6789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
||+|.+|...|+++..-+.++.........|+++.+||+|
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQd 130 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQD 130 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhH
Confidence 9999999999999988888887777778999999999999
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.89 E-value=6.5e-22 Score=123.43 Aligned_cols=118 Identities=24% Similarity=0.307 Sum_probs=96.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|+|||||++++....++..+.++.+.++....... ++..+.+.+||+||+..+...+..+++.+++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE--DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL 78 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE--CCEEEEEEEEECCCcccchHHHHHHHhhhhEEE
Confidence 479999999999999999999999877777777777665544433 234478999999999999999999999999999
Q ss_pred EEEeCCCc-chHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVP-GHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.++|+... .++.... .|...+...... +.|+++++||+|.
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~ 120 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDL 120 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccC
Confidence 99999887 6776665 777777665543 7899999999995
No 136
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=5.2e-22 Score=127.18 Aligned_cols=114 Identities=22% Similarity=0.235 Sum_probs=84.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-------CCCCccC------CcceeEEEEEeeeec---CCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLT-------TAEEYHP------TQGVRIVECEHSYAL---DTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~-------~~~~~~~------t~~~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~ 67 (135)
+|+++|+++||||||++++++.. +...+.+ +.|.++......... ++..+.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111222 223433322222211 4567889999999999999
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+..+++.+|++++|||+++..++.....|.... . .++|+++|+||+|.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl 131 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDL 131 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCC
Confidence 99999999999999999999887777766665432 1 26799999999995
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=1.5e-21 Score=124.02 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=80.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----ccccchHHhhc--
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----KFESVWPAFQR-- 75 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~-- 75 (135)
+|+++|++|||||||++++.+...... ...+.......... +....+++||+||.. ..+.+...+++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~-----~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV-----DDGRSFVVADIPGLIEGASEGKGLGHRFLRHI 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc-----CCCCeEEEEecCcccCcccccCCchHHHHHHH
Confidence 689999999999999999997653211 11222221112211 122589999999963 22233444444
Q ss_pred -cCcEEEEEEeCCCc-chHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 76 -DVHGIIFVFNSGVP-GHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 76 -~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
.+|++++|+|++++ ++++.+..|++.+..... ....|+++|+||+|.
T Consensus 77 ~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 77 ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 59999999999999 799999999998876532 236899999999994
No 138
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=2.1e-21 Score=126.16 Aligned_cols=112 Identities=20% Similarity=0.241 Sum_probs=81.8
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCCCc------------cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117 4 KILILGPIMAGKTVLANALCD--LTTAEEY------------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV 69 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 69 (135)
+|+++|.+++|||||+++++. +.+...+ .++.|.++........ .....+++||+||++.|...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT--YKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE--ECCEEEEEEECCCcHHHHHH
Confidence 799999999999999999997 4433221 2234443332222222 25678999999999999999
Q ss_pred hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+..+++++|++++|||+++.. +.....|+..+.. .++|+++|+||+|.
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl 129 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDR 129 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCC
Confidence 999999999999999998742 3444455555432 26899999999995
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=3.5e-21 Score=121.46 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=73.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC---CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT---TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHG 79 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 79 (135)
+.|+++|+++||||||+++|.+.. ++....++............. ....+++||+||++++......+++.+|+
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ 77 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP---SGKRLGFIDVPGHEKFIKNMLAGAGGIDL 77 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec---CCcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence 368999999999999999999642 222222333322222222211 14589999999999887767778889999
Q ss_pred EEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 80 IIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 80 ~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++|+|+++ .++.+.+ ..+. ..+ ..|+++++||+|.
T Consensus 78 ii~V~d~~~~~~~~~~~~~----~~~~-~~~--~~~~ilv~NK~Dl 116 (164)
T cd04171 78 VLLVVAADEGIMPQTREHL----EILE-LLG--IKRGLVVLTKADL 116 (164)
T ss_pred EEEEEECCCCccHhHHHHH----HHHH-HhC--CCcEEEEEECccc
Confidence 999999987 2333322 2221 111 2499999999995
No 140
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=3.4e-20 Score=117.59 Aligned_cols=111 Identities=16% Similarity=0.151 Sum_probs=75.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCc--cCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc---------chHH
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEY--HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES---------VWPA 72 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~ 72 (135)
+|+++|++|+|||||++++.+..+.... ..|.+....... ...+.+++|||||...... ....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 75 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD------YKYLRWQVIDTPGLLDRPLEERNTIEMQAITA 75 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEc------cCceEEEEEECCCcCCccccCCchHHHHHHHH
Confidence 7999999999999999999998664221 112222221111 1357899999999742110 0011
Q ss_pred hhccCcEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
....++++++|+|.++..++ +....|+..+.... .+.|+++|+||+|.
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl 125 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDL 125 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEcccc
Confidence 12236899999999987654 66677888876543 37899999999995
No 141
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.85 E-value=1.8e-20 Score=122.50 Aligned_cols=113 Identities=17% Similarity=0.097 Sum_probs=79.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc---------ccchH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF---------ESVWP 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~ 71 (135)
++|+++|++|||||||++++++..... .+.++.......+.. + ....+.+||+||.... ....
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL----P-DGREVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe----c-CCceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 689999999999999999999976432 223333332222221 1 2237899999997321 1111
Q ss_pred HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+..+|++++|+|++++.++..+..|.+.+.... ..+.|+++|+||+|.
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-~~~~~viiV~NK~Dl 165 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELG-AEDIPMILVLNKIDL 165 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-cCCCCEEEEEEcccc
Confidence 13568999999999999998888877777665433 246899999999995
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.85 E-value=2.8e-20 Score=114.96 Aligned_cols=114 Identities=24% Similarity=0.367 Sum_probs=89.4
Q ss_pred EECCCCCChHHHHHHHhcCCC-CCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEe
Q psy10117 7 ILGPIMAGKTVLANALCDLTT-AEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85 (135)
Q Consensus 7 viG~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (135)
++|++|+|||||++++.+... .....++. .+....... .......+.+||++|...+......+++.++++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIE--VDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEE--ECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEE
Confidence 589999999999999999776 44455555 554444443 22357789999999998888777889999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 86 SGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 86 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
++++.++..+..|.............|+++++||+|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 99999999888874444334444589999999999953
No 143
>KOG1673|consensus
Probab=99.85 E-value=2.4e-21 Score=118.27 Aligned_cols=117 Identities=21% Similarity=0.353 Sum_probs=103.7
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
+.+||-++|++..|||||+-.+.++.+...+..+.|+++...+.. ..+..+.+.|||.+|++++..+.+....++.++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~--i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVS--IRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEE--ecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 368999999999999999999999998888888899988877764 445889999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+|+||+++++++..+.+|+.+....++ ..+|+ +||+|-|
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiPi-lvGTKyD 135 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNK-TAIPI-LVGTKYD 135 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCC-ccceE-EeccchH
Confidence 999999999999999999999876554 35665 5699998
No 144
>PTZ00099 rab6; Provisional
Probab=99.85 E-value=2.2e-20 Score=119.58 Aligned_cols=95 Identities=20% Similarity=0.354 Sum_probs=82.5
Q ss_pred CCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHh
Q psy10117 25 LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVT 104 (135)
Q Consensus 25 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 104 (135)
+.+.+.+.||+|.++....... ++..+.+.|||++|+++++.++..++++++++++|||++++++|+.+..|+..+.+
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~--~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYL--DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEE--CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3566778999998886665543 34679999999999999999999999999999999999999999999999999977
Q ss_pred ccCCCCceEEEEEecCCC
Q psy10117 105 QSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 105 ~~~~~~~p~ivv~nK~D~ 122 (135)
... .++|++|||||+|.
T Consensus 81 ~~~-~~~piilVgNK~DL 97 (176)
T PTZ00099 81 ERG-KDVIIALVGNKTDL 97 (176)
T ss_pred hcC-CCCeEEEEEECccc
Confidence 643 47899999999995
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.85 E-value=5.1e-21 Score=118.47 Aligned_cols=94 Identities=22% Similarity=0.219 Sum_probs=69.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc-----ccccchHHhhccCc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-----KFESVWPAFQRDVH 78 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~ 78 (135)
||+++|++|||||||++++.+... .+.+|.+.++ .-.+||+||+. .++.+. ..++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~--------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY--------------NDGAIDTPGEYVENRRLYSALI-VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE--------------cCeeecCchhhhhhHHHHHHHH-HHhhcCC
Confidence 899999999999999999998764 2344443321 11689999972 333333 3578999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|||++++.++.. ..|++.. ..|+++|+||+|.
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl 100 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFASIF-------VKPVIGLVTKIDL 100 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHHHhc-------cCCeEEEEEeecc
Confidence 9999999999998755 3454432 2399999999995
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=3.1e-20 Score=117.69 Aligned_cols=114 Identities=15% Similarity=0.057 Sum_probs=79.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
.|+++|++|+|||||+++|..+.+.....++.............. .....+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-LKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-CCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 589999999999999999998876554333333322222221110 1357899999999999988888899999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|.++...-.. ...+..+.. .+.|+++|+||+|..
T Consensus 81 ~d~~~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 81 VAADDGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKP 115 (168)
T ss_pred EECCCCccHHH-HHHHHHHHH----cCCCEEEEEEceecc
Confidence 99987532111 111222221 268999999999953
No 147
>KOG0096|consensus
Probab=99.84 E-value=1.6e-20 Score=118.02 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=105.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+|++++|+.|.|||+++++...+++...+.+|.|.......+.. +...++++.||+.|+|.+-.....||-...+++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t--n~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT--NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec--ccCcEEEEeeecccceeecccccccEEecceeE
Confidence 579999999999999999999999999999999998766555432 224799999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
++||++..-+..++..|..++.+.+. ++|++++|||.|
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvD 125 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVD 125 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc--CCCeeeecccee
Confidence 99999999999999999999988776 799999999999
No 148
>KOG3883|consensus
Probab=99.84 E-value=7.7e-20 Score=111.45 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=95.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeee-ecCCceEEEEEEecCCCccc-ccchHHhhccCc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSGDHKF-ESVWPAFQRDVH 78 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~~-~~~~~~~~~~~~ 78 (135)
.|++++|-.++|||+++..+..+... ..+.||+... |...+ ...+..-.+.++||.|.... ..+-.+|++-+|
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDi---Y~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDI---YVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccCCCCCccccchhhh---eeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 58999999999999999998876544 4577888763 33333 34456778999999997766 667778999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++||+..|++||+.+...-++|.+.+....+|+++++||+|.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr 130 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDR 130 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhc
Confidence 99999999999999988777777777777778999999999994
No 149
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.84 E-value=9.8e-20 Score=130.74 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=80.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch--------HH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW--------PA 72 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~ 72 (135)
.+||+++|++|||||||++++++.... ....++.+.++....... ....+++|||||...+.... ..
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~----~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL----NGILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE----CCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 368999999999999999999986432 122233334333333322 34577999999986554322 35
Q ss_pred hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++++|++++|||.+++.+++.. |+..+.. .+.|+++|+||+|.
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl 322 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDL 322 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccC
Confidence 67899999999999998887765 7776632 26799999999995
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=6.5e-20 Score=128.36 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=80.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCc---------ccccchH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH---------KFESVWP 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~ 71 (135)
++|+++|.+++|||||+|+|++..... .+.+|.+........ . ....+.+|||+|.. .|+..+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~--~---~~~~i~l~DT~G~~~~l~~~lie~f~~tl- 263 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL--P---DGGEVLLTDTVGFIRDLPHELVAAFRATL- 263 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe--C---CCceEEEEecCcccccCCHHHHHHHHHHH-
Confidence 689999999999999999999976432 233444443322222 1 23478999999962 222221
Q ss_pred HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+.++|++++|+|++++.+++.+..|...+.... ..+.|+++|+||+|.
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-~~~~piIlV~NK~Dl 313 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELG-AEDIPQLLVYNKIDL 313 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-cCCCCEEEEEEeecC
Confidence 24779999999999999988888776665554332 247899999999995
No 151
>KOG0076|consensus
Probab=99.83 E-value=7.6e-21 Score=117.90 Aligned_cols=115 Identities=26% Similarity=0.415 Sum_probs=98.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC-------CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT-------TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQ 74 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~ 74 (135)
.+.++++|+.++|||||+....... .+..-.+|+|.+..++.. ....+.+||..|++..+++|..||
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v------~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV------CNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee------ccceeEEEEcCChHHHHHHHHHHH
Confidence 3678999999999999998766432 123345777877666665 467899999999999999999999
Q ss_pred ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+|++++++|.++++.|+....-++.+..+....++|+++.+||.|.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~ 138 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDL 138 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhh
Confidence 999999999999999999999888888888877889999999999993
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.83 E-value=1.1e-19 Score=115.95 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=77.1
Q ss_pred EECCCCCChHHHHHHHhcCCCC-CC-ccCCcceeEEEEEeeeecCCc-eEEEEEEecCCCcc----cccch---HHhhcc
Q psy10117 7 ILGPIMAGKTVLANALCDLTTA-EE-YHPTQGVRIVECEHSYALDTS-KTEIELWDTSGDHK----FESVW---PAFQRD 76 (135)
Q Consensus 7 viG~~~~GKssli~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~----~~~~~---~~~~~~ 76 (135)
++|++|||||||++++.+.... .. ...|.......... . ...+.+||+||... .+.+. ..++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEV------PDGARIQVADIPGLIEGASEGRGLGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEc------CCCCeEEEEeccccchhhhcCCCccHHHHHHHhc
Confidence 5899999999999999997641 11 12222322222221 2 56789999999632 22222 335678
Q ss_pred CcEEEEEEeCCCc------chHHHHHHHHHHHHhccCC------CCceEEEEEecCCC
Q psy10117 77 VHGIIFVFNSGVP------GHISELLLFYDYFVTQSDL------NNHKCLLIDNVKPG 122 (135)
Q Consensus 77 ~~~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~------~~~p~ivv~nK~D~ 122 (135)
++++++|+|.++. .+++++..|...+...... .+.|+++|+||+|.
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 132 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDL 132 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhc
Confidence 9999999999988 5788888888887654431 47899999999995
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.82 E-value=1.8e-20 Score=122.23 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=70.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC-----------Ccccccch
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG-----------DHKFESVW 70 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~ 70 (135)
.++|+++|++|||||||++++.+..+.....++.+.. ...... . .+.+||+|| +++++..+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~----~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDW----G--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEee----c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4689999999999999999999987654444443322 222211 1 589999999 56677766
Q ss_pred HHhhc-c---CcEEEEEEeCCCcchHHHH-HHHHH--------HHHhccCCCCceEEEEEecCCC
Q psy10117 71 PAFQR-D---VHGIIFVFNSGVPGHISEL-LLFYD--------YFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 71 ~~~~~-~---~~~~i~v~d~~~~~s~~~~-~~~~~--------~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..++. . ++++++|+|.++. .++ ..|.. ++.......+.|+++|+||+|.
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl 142 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSF---IEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDK 142 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccc---cccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 67765 3 4577777776542 222 22210 0111111136899999999995
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=3.5e-19 Score=129.29 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=76.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--------cccchHHh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--------FESVWPAF 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~ 73 (135)
.+|+++|.++||||||++++++.... ....++.+.+........ ....+.+|||||.+. +......+
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~----~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW----NGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE----CCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 58999999999999999999987542 222333333222222221 234689999999763 33345567
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++.+|++++|+|+++..++.. ..|...+.. .+.|+++|+||+|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl 158 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDD 158 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccC
Confidence 889999999999998766532 334433322 36899999999995
No 155
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=2.5e-19 Score=112.35 Aligned_cols=105 Identities=21% Similarity=0.150 Sum_probs=73.4
Q ss_pred EECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc------chHHhhc--cCc
Q psy10117 7 ILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES------VWPAFQR--DVH 78 (135)
Q Consensus 7 viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~~~ 78 (135)
++|++|+|||||++++.+..+.....++.+.......... ....+.+|||||+..+.. ++..++. +++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL----GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee----CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence 5899999999999999987654433344333332222322 235789999999876654 3456665 999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|+|.++.+.. ..|+..+.. .+.|+++|+||+|.
T Consensus 77 ~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl 113 (158)
T cd01879 77 LIVNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDE 113 (158)
T ss_pred EEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhh
Confidence 99999999876543 344444432 26899999999995
No 156
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=5.4e-19 Score=122.96 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=81.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-Cc-cCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----cccchHH---h
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-EY-HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----FESVWPA---F 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~---~ 73 (135)
..|.++|.|+||||||+++++...... .+ ..|.......+.. .....+.+||+||.-. ...+... +
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~-----~~~~~~~i~D~PGli~ga~~~~gLg~~flrh 233 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRV-----DDYKSFVIADIPGLIEGASEGAGLGHRFLKH 233 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEe-----CCCcEEEEEeCCCccCCCCccccHHHHHHHH
Confidence 368899999999999999999865321 12 1222222222222 1334789999999632 2223333 4
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
+++++++++|+|+++.++++.+..|..++..+.. +.+.|+++|+||+|.
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL 283 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDL 283 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECccc
Confidence 4579999999999998899999999999977643 347899999999995
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=1.6e-18 Score=108.41 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=76.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc--------hHHh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV--------WPAF 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 73 (135)
++|+++|++|+|||||++++.+.... ....++....+...... . ....+.+||+||...+... ...+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID--I--GGIPVRLIDTAGIRETEDEIEKIGIERAREA 77 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEE--e--CCEEEEEEECCCcCCCcchHHHHHHHHHHHH
Confidence 68999999999999999999987532 11122222222222221 1 3467899999997655322 2245
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+.+++++++|+|++++.+......|.. ....|+++|+||+|.
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~ 119 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDL 119 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhc
Confidence 679999999999998887766654433 237899999999994
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.81 E-value=6.7e-19 Score=126.93 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=77.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc--------hHHh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV--------WPAF 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 73 (135)
++|+++|.+++|||||++++++.... ....+....++....... ....+.+|||+|...+... ...+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~----~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL----DGIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE----CCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 68999999999999999999987532 222232233332322222 3457899999998655432 2236
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|++++|+|.+++.+++....|.. ..+.|+++|+||+|.
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL 333 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADL 333 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhc
Confidence 789999999999999888876655543 236899999999995
No 159
>KOG1707|consensus
Probab=99.81 E-value=3.4e-19 Score=127.98 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=96.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|+.|+||||||-.+...++++...+-.. .+.++.+..+..+...|.|++..+.-+.....-++.|++++
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~----~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP----RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCC----ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 47999999999999999999999988765544333 44555555557777999999877666666677889999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccC-CCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISEL-LLFYDYFVTQSD-LNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~p~ivv~nK~D~~ 123 (135)
++|+++++++++.+ .+|+..+++..+ ..+.|+|+||||+|..
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~ 128 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG 128 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence 99999999999999 689999977542 2479999999999954
No 160
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=8.8e-19 Score=129.74 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=86.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-------CCCCc------cCCcceeEEEEEeee--e-cCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLT-------TAEEY------HPTQGVRIVECEHSY--A-LDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~-------~~~~~------~~t~~~~~~~~~~~~--~-~~~~~~~~~i~d~~g~~~~~ 67 (135)
+++++|+.++|||||+++|+... +...+ +.+.|.++....... . .++..+.+++|||||++.|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 79999999999999999998642 11111 123355544333322 1 13467899999999999999
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
..+..+++.+|++++|+|+++..++.....|...+. .+.|+++|+||+|..
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLP 135 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 999999999999999999999877777766655432 267999999999953
No 161
>PRK15494 era GTPase Era; Provisional
Probab=99.80 E-value=1.5e-18 Score=121.18 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=71.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-cccchH-------
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FESVWP------- 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~------- 71 (135)
.+|+++|.+|||||||+++|.+..+. +....|.......+.. ....+.+|||||... +..+..
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~------~~~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL------KDTQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe------CCeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 48999999999999999999987654 2233333321111121 335789999999843 222221
Q ss_pred HhhccCcEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRDVHGIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..++++|++++|+|..+ +|.... .|+..+... +.|.++|+||+|.
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl 172 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDI 172 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcC
Confidence 23679999999999654 566664 455555322 3566789999995
No 162
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.80 E-value=9.8e-19 Score=131.15 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=83.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
.+|+++|+.++|||||+++|....+.....+++......+......++....+++|||||++.|..++..+++.+|++++
T Consensus 245 p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaIL 324 (742)
T CHL00189 245 PIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAIL 324 (742)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEE
Confidence 47999999999999999999987665443333433333333333323356899999999999999999999999999999
Q ss_pred EEeCCCcc---hHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 83 VFNSGVPG---HISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 83 v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|+|+++.. +++.+. .+. ..++|+++++||+|..
T Consensus 325 VVDA~dGv~~QT~E~I~----~~k----~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 325 IIAADDGVKPQTIEAIN----YIQ----AANVPIIVAINKIDKA 360 (742)
T ss_pred EEECcCCCChhhHHHHH----HHH----hcCceEEEEEECCCcc
Confidence 99998743 333332 221 1368999999999953
No 163
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=3.4e-18 Score=112.62 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=79.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCC-----------------ccCCcceeEEE--EEeeee-cCCceEEEEEEecCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEE-----------------YHPTQGVRIVE--CEHSYA-LDTSKTEIELWDTSGD 63 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~-----------------~~~t~~~~~~~--~~~~~~-~~~~~~~~~i~d~~g~ 63 (135)
+|+++|+.++|||||+.+|+....... .....+.++.. ...... .++..+.+++||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987543211 01112222211 111111 1345689999999999
Q ss_pred cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+.|......++..+|++++|+|.++..++. ...|+..+.. .+.|+++|+||+|.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~ 135 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDR 135 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECccc
Confidence 999888888999999999999998876653 2444444422 24899999999994
No 164
>KOG4423|consensus
Probab=99.79 E-value=3.8e-22 Score=125.03 Aligned_cols=119 Identities=20% Similarity=0.364 Sum_probs=103.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+|++|+|+.|+|||+++.++.+..+...|..++|.++.-..... .+...+++++||..||++|..+..-||+.+++..+
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~w-dd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQW-DDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-ChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 68999999999999999999999998889999998665433332 33467889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCC---CCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDL---NNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~ 122 (135)
|||+++..+|+.+..|.+++.....+ .+.|+++.+||||.
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~ 147 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ 147 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhcc
Confidence 99999999999999999998765443 37899999999994
No 165
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=3.3e-18 Score=122.33 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=76.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--cccchHHh-----
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--FESVWPAF----- 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~~~~----- 73 (135)
.+|+++|.++||||||+|+|++...... ...|.+.....+.. . ....+.+|||+|..+ ....+..|
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l--~---~~~~~~l~DTaG~~r~lp~~lve~f~~tl~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV--A---DVGETVLADTVGFIRHLPHDLVAAFKATLQ 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe--C---CCCeEEEEecCcccccCCHHHHHHHHHHHH
Confidence 4799999999999999999998654322 22333332222222 1 122678999999733 22233333
Q ss_pred -hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 -QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|++++|+|++++.+++.+..|...+.... ..+.|+++|+||+|.
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-~~~~pvIiV~NKiDL 321 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEID-AHEIPTLLVMNKIDM 321 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccC
Confidence 578999999999999988877755444333222 236899999999995
No 166
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.79 E-value=4.1e-18 Score=109.68 Aligned_cols=111 Identities=17% Similarity=0.084 Sum_probs=79.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCC----------------cceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPT----------------QGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|+++|.+|+|||||++++++.......... .......... +.....+.+||+||...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~liDtpG~~~~~ 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF----EWPDRRVNFIDTPGHEDFS 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE----eeCCEEEEEEeCCCcHHHH
Confidence 5899999999999999999987655332111 1111111111 1135689999999999888
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
..+..+++.+|++++|+|..+..+.. ...++..+.. .+.|+++|+||+|..
T Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~ 127 (189)
T cd00881 77 SEVIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRV 127 (189)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCc
Confidence 88889999999999999998765443 2344444432 378999999999953
No 167
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.79 E-value=3.7e-18 Score=118.66 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=80.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-Cc-cCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----cccchHHhh--
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-EY-HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----FESVWPAFQ-- 74 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~~-- 74 (135)
..|+++|.++||||||+++++...+.. .+ ..|.......... .....+.+||+||... ...+...|+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~-----~~~~~~~i~D~PGli~~a~~~~gLg~~flrh 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV-----DDGRSFVIADIPGLIEGASEGAGLGHRFLKH 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe-----CCceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence 468999999999999999999865321 11 1222222222222 1236889999999642 223334444
Q ss_pred -ccCcEEEEEEeCCCc---chHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 75 -RDVHGIIFVFNSGVP---GHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 75 -~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
++++++++|+|+++. ++++.+..|.+++..+.. ..+.|+++|+||+|.
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL 285 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDL 285 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccC
Confidence 469999999999987 678888889888876532 347899999999995
No 168
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=3.9e-18 Score=122.86 Aligned_cols=109 Identities=21% Similarity=0.161 Sum_probs=74.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--------cccchHHh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--------FESVWPAF 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~ 73 (135)
.+|+++|.+|||||||+++|.+.... ....+..+.+........ ....+.+|||||.+. +......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~----~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW----LGREFILIDTGGIEPDDDGFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE----CCcEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 58999999999999999999987642 111222222222222221 337899999999876 23334556
Q ss_pred hccCcEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+.++|++++|+|.+++.+. ..+..|+... +.|+++|+||+|.
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-------~~piilv~NK~D~ 121 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKS-------NKPVILVVNKVDG 121 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-------CCcEEEEEECccC
Confidence 7899999999999875443 2334454432 6899999999994
No 169
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=4.1e-18 Score=109.38 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=72.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----------ccccchH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----------KFESVWP 71 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~ 71 (135)
.++|+++|++|+|||||++++.+..+...+.++.+.+........ + -.+.+||+||.. .+..+..
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N---DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C---CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 468999999999999999999997644444445443221111111 1 168999999942 2333344
Q ss_pred Hhhcc---CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRD---VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.|++. ++++++|+|.+++-+..... ++..+. . .+.|+++++||+|.
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~-~---~~~pviiv~nK~D~ 141 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLR-E---RGIPVLIVLTKADK 141 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHH-H---cCCCEEEEEECccc
Confidence 55553 57999999998765544432 223332 1 26899999999995
No 170
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=3.4e-18 Score=124.18 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=76.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----------ccccch-
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----------KFESVW- 70 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~- 70 (135)
+||+++|.++||||||+++|++.... ....++.+.+........ ....+.+|||+|.. .+..+.
T Consensus 212 ~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~----~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 212 RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL----GGKTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE----CCEEEEEEECCCccccccccchHHHHHHHHH
Confidence 68999999999999999999987642 222233333332222222 23456899999953 222222
Q ss_pred HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+++++|++++|+|++++.++..+. ++..+.. .+.|+++|+||+|.
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl 334 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDL 334 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECccc
Confidence 23578999999999999988877664 4444432 36899999999995
No 171
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.78 E-value=5.8e-19 Score=112.39 Aligned_cols=114 Identities=20% Similarity=0.277 Sum_probs=73.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHh---hccCcEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAF---QRDVHGI 80 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~---~~~~~~~ 80 (135)
.|+++||+|+|||+|+..|..+...++..+. ..+. .+.. .......+.+.|+||+++.+...... ...+.++
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~-~~~~---~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI-AYNV---NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE-ECCG---SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc-eEEe---ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 5899999999999999999998665443222 3222 1111 22345578999999999888755544 7789999
Q ss_pred EEEEeCCC-cchHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGV-PGHISELLLFYDYFVTQS--DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D~ 122 (135)
|||+|.+. +..+..+.+++-.+.... ....+|++|++||+|.
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl 124 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDL 124 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTS
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccc
Confidence 99999874 445666655555444322 2347999999999994
No 172
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=2.5e-18 Score=111.50 Aligned_cols=115 Identities=15% Similarity=0.080 Sum_probs=74.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC----CCCC-----ccCCcceeEEEEEeeee--------cCCceEEEEEEecCCCcc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT----TAEE-----YHPTQGVRIVECEHSYA--------LDTSKTEIELWDTSGDHK 65 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~----~~~~-----~~~t~~~~~~~~~~~~~--------~~~~~~~~~i~d~~g~~~ 65 (135)
+||+++|++++|||||+++++... .... ...|.+..+..+..... .......+++||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 1111 12344444444443211 123467899999999866
Q ss_pred cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 66 FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+........+.+|++++|+|.++.........+.. ... .+.|+++++||+|.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~---~~~~~iiv~NK~Dl 132 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI---LCKKLIVVLNKIDL 132 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH---cCCCEEEEEECccc
Confidence 53333334567899999999987654443333321 111 15799999999995
No 173
>KOG0072|consensus
Probab=99.78 E-value=2.9e-19 Score=107.92 Aligned_cols=114 Identities=24% Similarity=0.353 Sum_probs=95.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+.+|+++|..|+|||+++.++.-++. ....|++|.+...... .+.++++||..|+...++.|..||.+.+++|
T Consensus 18 e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~y------KNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPY------KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccccc------ccccceeeEccCcccccHHHHHHhcccceEE
Confidence 57899999999999999988877654 3466888887665555 6789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|+|.+|.....-....+-.+.++..+.+..+++++||+|.
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~ 131 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY 131 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc
Confidence 99999998877666555556666666778999999999993
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.78 E-value=4.1e-18 Score=125.86 Aligned_cols=113 Identities=15% Similarity=0.076 Sum_probs=81.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
.+|+++|+.++|||||++++.+..+...+.+++......+..... ....+++|||||++.|..++...++.+|++++
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~---~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE---DGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC---CCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 579999999999999999999877765544444444333333321 11278999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|+|.++...-..... +... ...+.|+++++||+|..
T Consensus 165 VVda~dgv~~qT~e~-i~~~----~~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 165 VVAADDGVMPQTIEA-ISHA----KAANVPIIVAINKIDKP 200 (587)
T ss_pred EEECCCCCCHhHHHH-HHHH----HHcCCCEEEEEECcccc
Confidence 999887432222222 2222 12368999999999953
No 175
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=8.5e-18 Score=114.33 Aligned_cols=108 Identities=21% Similarity=0.147 Sum_probs=71.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCC-CccC-CcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------chHHh
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAE-EYHP-TQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------VWPAF 73 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~ 73 (135)
+|+++|.+|||||||+|+|++..... ...+ |......... .. ....+.+|||||...... ....+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~---~~--~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIH---TT--GASQIIFIDTPGFHEKKHSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEE---Ec--CCcEEEEEECcCCCCCcchHHHHHHHHHHHH
Confidence 68999999999999999999976431 1111 1111111111 11 234689999999754321 12345
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|++++|+|.++..+.+ ..++..+.. .+.|+++|+||+|.
T Consensus 77 l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl 119 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDN 119 (270)
T ss_pred HhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeC
Confidence 78999999999999877664 334444422 26899999999995
No 176
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=6.5e-18 Score=105.99 Aligned_cols=113 Identities=23% Similarity=0.355 Sum_probs=86.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCC--------cc----CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEE--------YH----PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV 69 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~--------~~----~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 69 (135)
..||++.|+-++||||+++.++....... +. .|+.+++-.... .....+.++++|||++|+-+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~-----~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL-----DEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE-----cCcceEEEecCCCcHHHHHH
Confidence 57999999999999999999998764211 11 223333333332 24468999999999999999
Q ss_pred hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|..+++++.++++++|.+.+..+ +....++-+.. .. .+|++|++||+|..
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-~~--~ip~vVa~NK~DL~ 134 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-RN--PIPVVVAINKQDLF 134 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-cc--CCCEEEEeeccccC
Confidence 99999999999999999999998 55555554432 22 39999999999943
No 177
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.77 E-value=1.3e-17 Score=110.42 Aligned_cols=112 Identities=22% Similarity=0.296 Sum_probs=76.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCC---ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-----cchHHhhc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEE---YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-----SVWPAFQR 75 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-----~~~~~~~~ 75 (135)
||+++|+++|||||+.+.+.++..+.+ .++|..+....+.. ...+.+++||+||+..+. ......|+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~-----~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~ 75 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF-----LSFLPLNIWDCPGQDDFMENYFNSQREEIFS 75 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC-----TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHC
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec-----CCCcEEEEEEcCCccccccccccccHHHHHh
Confidence 799999999999999999998766533 35666665444433 256799999999987553 34677899
Q ss_pred cCcEEEEEEeCCCcchH---HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 76 DVHGIIFVFNSGVPGHI---SELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 76 ~~~~~i~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++.++|||+|+.+.+-. ..+...+..+.+..+ ++.+.++.+|+|.
T Consensus 76 ~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp--~~~v~vfiHK~D~ 123 (232)
T PF04670_consen 76 NVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP--NIKVFVFIHKMDL 123 (232)
T ss_dssp TESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST--T-EEEEEEE-CCC
T ss_pred ccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC--CCeEEEEEeeccc
Confidence 99999999999855533 333455555655554 8999999999995
No 178
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=9.1e-18 Score=105.05 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=69.9
Q ss_pred EEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------chHHhhc
Q psy10117 6 LILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------VWPAFQR 75 (135)
Q Consensus 6 ~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~ 75 (135)
+++|.+|+|||||++++++.... ... +............ .....+.+||+||...+.. ....+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~----~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAE----WGGREFILIDTGGIEPDDEGISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEE----ECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence 47999999999999999986421 111 2212111111221 1346799999999877543 3345678
Q ss_pred cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 76 DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 76 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
++|++++|+|..+..+.... ++.+..+. .+.|+++|+||+|..
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~ 118 (157)
T cd01894 76 EADVILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNI 118 (157)
T ss_pred hCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccC
Confidence 89999999999876544332 22222221 258999999999953
No 179
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=1.3e-17 Score=111.27 Aligned_cols=113 Identities=21% Similarity=0.231 Sum_probs=78.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC----C---------Cc---cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA----E---------EY---HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~----~---------~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|+++|..|+|||||+++|+...-. . ++ ....+.++...... ......++++||+||+..|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~--~~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVAS--FQWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEE--EEECCEEEEEEeCCCccchH
Confidence 5899999999999999999863211 0 00 11122222111111 12256789999999999998
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
..+..+++.+|++++|+|.++.... ....++..+.+ .+.|+++++||+|..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~ 129 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence 8889999999999999999886543 33445554433 268999999999954
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.76 E-value=1e-17 Score=126.63 Aligned_cols=112 Identities=14% Similarity=0.079 Sum_probs=80.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
..|+++|+.++|||||+++|....+.......+......+.+.. ....++||||||++.|..++...++.+|++++
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~----~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET----NGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE----CCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 47999999999999999999887665443333333332333322 23679999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|||+++...-.....| ..+ ...++|++|++||+|..
T Consensus 367 VVdAddGv~~qT~e~i-~~a----~~~~vPiIVviNKiDl~ 402 (787)
T PRK05306 367 VVAADDGVMPQTIEAI-NHA----KAAGVPIIVAINKIDKP 402 (787)
T ss_pred EEECCCCCCHhHHHHH-HHH----HhcCCcEEEEEECcccc
Confidence 9999874321111222 111 12368999999999963
No 181
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=4e-18 Score=115.54 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=75.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC-CCC----------------ccC---CcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT-AEE----------------YHP---TQGVRIVECEHSYALDTSKTEIELWDTSGD 63 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~-~~~----------------~~~---t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 63 (135)
+|+++|+.|+|||||+++|+...- ... +.+ ..+.++..... ..+....++++|||||+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~--~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVM--QFEYRDCVINLLDTPGH 81 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEE--EEeeCCEEEEEEECCCc
Confidence 799999999999999999984211 000 000 01111111111 12236789999999999
Q ss_pred cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
..|.......++.+|++++|+|.++... .....++.... ..++|+++++||+|..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~----~~~~P~iivvNK~D~~ 136 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCR----LRGIPIITFINKLDRE 136 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHH----hcCCCEEEEEECCccC
Confidence 9888777888999999999999987533 22233333332 1368999999999953
No 182
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=2.4e-17 Score=117.57 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=79.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCC-Cc-cCCcceeEEEEEeeeecCCceEEEEEEecCCCc----ccccchHHhh---
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAE-EY-HPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----KFESVWPAFQ--- 74 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~--- 74 (135)
.|+++|.++||||||++++++..+.- .+ ..|...++..+... ....+.+||+||.. ....+...|+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-----~~~~~~laD~PGliega~~~~gLg~~fLrhi 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-----DGRSFVMADIPGLIEGASEGVGLGHQFLRHI 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-----CCceEEEEECCCCcccccccchHHHHHHHHH
Confidence 68999999999999999999865321 11 12223222222221 24579999999963 2223344444
Q ss_pred ccCcEEEEEEeCCCc---chHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 75 RDVHGIIFVFNSGVP---GHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
++++++++|+|+++. ++++....|.+++..+.. +.+.|.+||+||+|.
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 469999999999865 677888888888876543 347899999999995
No 183
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.76 E-value=1.3e-17 Score=108.17 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=72.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC----------cccccchH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD----------HKFESVWP 71 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~ 71 (135)
.++|+++|++|+|||||++++++..+...+.++.+.+.. ..... ....+.+||+||. +.+.....
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~---~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQL---INFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeE---EEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 368999999999999999999997655555555554321 11111 1368999999994 33344455
Q ss_pred HhhccC---cEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRDV---HGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+++.+ +++++++|.+++.+... .++...... .+.|+++++||+|.
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl 147 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADK 147 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccc
Confidence 566644 67888899877644322 222222221 26899999999995
No 184
>KOG0077|consensus
Probab=99.76 E-value=2.5e-18 Score=106.11 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=93.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
|++++|-.++|||||++.+.+.+.. ++..||.. ...+ ..++++-+|.+|+...+..|..|+..++++
T Consensus 22 KllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE----~l~I------g~m~ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 22 KLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELSI------GGMTFTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred eEEEEeecCCchhhHHHHHccccccccCCCcCCChH----Hhee------cCceEEEEccccHHHHHHHHHHHHhhhcee
Confidence 8999999999999999999886543 33444433 3333 677899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
++.+|+.|.+.|.+.+.-++.+.........|+++.+||+|..
T Consensus 92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p 134 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP 134 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC
Confidence 9999999999999998888888777666789999999999943
No 185
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.76 E-value=9.3e-18 Score=123.87 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=77.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeeeec-----CC-----ceEEEEEEecCCCcccccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSYAL-----DT-----SKTEIELWDTSGDHKFESV 69 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~-----~~-----~~~~~~i~d~~g~~~~~~~ 69 (135)
-|+++|++++|||||+++|.+..+.... ..++|..+......... .. ....+.+|||||++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 4889999999999999999987664322 22334333222111000 00 1123889999999999999
Q ss_pred hHHhhccCcEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+..+++.+|++++|+|+++ +++++.+..+ . . .+.|+++++||+|.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~-~---~~vpiIVv~NK~Dl 133 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALNIL----R-M---YKTPFVVAANKIDR 133 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----H-H---cCCCEEEEEECCCc
Confidence 9999999999999999987 4455444322 1 1 26899999999995
No 186
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=2.2e-17 Score=109.09 Aligned_cols=114 Identities=20% Similarity=0.206 Sum_probs=77.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC--CC------------ccCCcceeEE--EEEeeee------cCCceEEEEEEecC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA--EE------------YHPTQGVRIV--ECEHSYA------LDTSKTEIELWDTS 61 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~--~~------------~~~t~~~~~~--~~~~~~~------~~~~~~~~~i~d~~ 61 (135)
+|+++|..++|||||+.+|+...-. .. .+...|.+.. ....... .++..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999854211 00 0011122111 1111111 12347899999999
Q ss_pred CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|++.|......+++.+|++++|+|+.+..+... ...+..+.. .++|+++|+||+|.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~ 137 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDR 137 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCc
Confidence 999999999999999999999999988765543 223333322 25799999999995
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=2.7e-17 Score=118.29 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=72.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc--------ccccchHHhh
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH--------KFESVWPAFQ 74 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~ 74 (135)
+|+++|.+|||||||+++|.+.... ....+....+........ ....+.+|||||.. .+......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW----GGREFILIDTGGIEEDDDGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE----CCeEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 5899999999999999999987532 111122222221222211 34579999999963 3444556678
Q ss_pred ccCcEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 75 RDVHGIIFVFNSGVPGHIS--ELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+.+|++++|+|..+..+.. .+..|+.+ .+.|+++|+||+|.
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~ 119 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDG 119 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccC
Confidence 8999999999998754432 23344433 26899999999995
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.74 E-value=2.3e-17 Score=122.08 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=77.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC---CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT---TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHG 79 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 79 (135)
+.|+++|+.++|||||+++|.+.. ++.+..++++.+........ ....+.+||+||++.|.......+.++|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~----~~~~v~~iDtPGhe~f~~~~~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL----PDYRLGFIDVPGHEKFISNAIAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe----CCEEEEEEECCCHHHHHHHHHhhhccCCE
Confidence 468999999999999999999632 33333444444333222222 23789999999999998888888899999
Q ss_pred EEEEEeCCCc---chHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 80 IIFVFNSGVP---GHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 80 ~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
+++|+|+++. ++++.+. .+. . .++| +++|+||+|.
T Consensus 77 aILVVDa~~G~~~qT~ehl~----il~-~---lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 77 ALLVVDADEGVMTQTGEHLA----VLD-L---LGIPHTIVVITKADR 115 (581)
T ss_pred EEEEEECCCCCcHHHHHHHH----HHH-H---cCCCeEEEEEECCCC
Confidence 9999999883 3443332 221 1 1466 9999999995
No 189
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=4.7e-17 Score=106.01 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=69.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHh-----hcc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAF-----QRD 76 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~-----~~~ 76 (135)
++||+++|++|+|||||+|.+.+.........+.+....+.............+.+||+||..........| +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986554322222221100111111111123478999999975433333333 567
Q ss_pred CcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 77 VHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 77 ~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|.++++.+ ..|... ..|++.+... +.|+++|+||+|.
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~ 119 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM----GKKFYFVRTKVDR 119 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh----CCCEEEEEecccc
Confidence 888888743 235445 3455555432 4799999999995
No 190
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=1.8e-17 Score=103.49 Aligned_cols=108 Identities=20% Similarity=0.181 Sum_probs=69.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------cchHHhh--
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------SVWPAFQ-- 74 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~-- 74 (135)
++|+++|.|+||||||+|+|++........|....+.....+.. ....+.+.|+||.-... .....++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~----~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL----GDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE----TTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe----cCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 58999999999999999999998754333344444433333322 34789999999943221 2223343
Q ss_pred ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
.+.|+++.|.|.++. +.-.+...++... +.|++++.||+|
T Consensus 77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e~----g~P~vvvlN~~D 116 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL---ERNLYLTLQLLEL----GIPVVVVLNKMD 116 (156)
T ss_dssp TSSSEEEEEEEGGGH---HHHHHHHHHHHHT----TSSEEEEEETHH
T ss_pred cCCCEEEEECCCCCH---HHHHHHHHHHHHc----CCCEEEEEeCHH
Confidence 589999999999774 3333444444332 689999999999
No 191
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=8.6e-17 Score=101.19 Aligned_cols=113 Identities=21% Similarity=0.168 Sum_probs=71.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------chHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------VWPAF 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~ 73 (135)
..+|+++|++|+|||||++++.+.............. ..... ........+.+||+||...... .....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 4689999999999999999999875432111111110 01111 1112356889999999654332 23345
Q ss_pred hccCcEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+..++++++|+|.+++. .... .++..+... +.|+++|+||+|..
T Consensus 80 ~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~~----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 LKDVDLVLFVVDASEPI--GEGDEFILELLKKS----KTPVILVLNKIDLV 124 (168)
T ss_pred HHhCCEEEEEEECCCcc--CchHHHHHHHHHHh----CCCEEEEEEchhcc
Confidence 77899999999999872 2222 233333222 57999999999953
No 192
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=6.9e-17 Score=116.77 Aligned_cols=114 Identities=15% Similarity=0.086 Sum_probs=76.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-C-ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----cccch---HHh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-E-YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----FESVW---PAF 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~---~~~ 73 (135)
.+|+|+|.++||||||+++|++..+.. . ...|.......+.. ....+.+||+||.-. .+.+. -.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~------~~~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA------GDTRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE------CCeEEEEEECCCCccccchhhHHHHHHHHH
Confidence 478999999999999999999865431 1 12333333222222 345899999999531 11222 223
Q ss_pred hccCcEEEEEEeCCCc----chHHHHHHHHHHHHhcc----------CCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVP----GHISELLLFYDYFVTQS----------DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~----~s~~~~~~~~~~i~~~~----------~~~~~p~ivv~nK~D~ 122 (135)
+++++++++|+|+++. +.++.+..|..++..+. .+...|++||+||+|.
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL 296 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV 296 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc
Confidence 5679999999999853 35666666666665543 2347899999999995
No 193
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.2e-16 Score=101.34 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=71.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-----------c
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-----------V 69 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~ 69 (135)
.++|+++|++|+|||||++++.+.... ....+............ . ....+.+||+||...... .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~ 77 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE--Y--DGKKYTLIDTAGIRRKGKVEEGIEKYSVLR 77 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE--E--CCeeEEEEECCCCccccchhccHHHHHHHH
Confidence 368999999999999999999986532 11112221111111111 1 234578999999653311 1
Q ss_pred hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...++..+|++++|+|.+++.+.... .++..+.. .+.|+++++||+|.
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl 125 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDL 125 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEecccc
Confidence 12346789999999999988775443 23333322 25799999999995
No 194
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.73 E-value=4.4e-17 Score=120.54 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeeeecCCce-----E-----EEEEEecCCCccccc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSYALDTSK-----T-----EIELWDTSGDHKFES 68 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~-----~-----~~~i~d~~g~~~~~~ 68 (135)
..|+++|+.++|||||+++|.+....... ..++|..+..........+.. . .+.+|||||++.|..
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 86 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN 86 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence 36899999999999999999875433222 123343322221110000111 1 278999999999999
Q ss_pred chHHhhccCcEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 69 VWPAFQRDVHGIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++...++.+|++++|+|+++ +++++.+..+ .. .+.|+++++||+|.
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~----~~vpiIvviNK~D~ 135 (586)
T PRK04004 87 LRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR----RKTPFVVAANKIDR 135 (586)
T ss_pred HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH----cCCCEEEEEECcCC
Confidence 88888999999999999987 5555554322 11 26899999999995
No 195
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.73 E-value=5.9e-17 Score=120.23 Aligned_cols=115 Identities=21% Similarity=0.225 Sum_probs=83.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCC--CC-----CC------ccCCcceeEEEEEee--ee-cCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLT--TA-----EE------YHPTQGVRIVECEHS--YA-LDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~--~~-----~~------~~~t~~~~~~~~~~~--~~-~~~~~~~~~i~d~~g~~~~~ 67 (135)
+++++|+.++|||||+.+|+... .. .. .+.+.|.++...... +. .++..+.+++|||||+..|.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 79999999999999999998632 11 00 122334433322221 11 24567899999999999999
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
..+..+++.+|++++|+|+++.........|..... .+.|+++|+||+|..
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-----~~lpiIvViNKiDl~ 139 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NDLEIIPVLNKIDLP 139 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 999999999999999999998766665555644321 267999999999953
No 196
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.73 E-value=1.5e-17 Score=104.87 Aligned_cols=98 Identities=24% Similarity=0.184 Sum_probs=66.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch----HHhhccCcE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW----PAFQRDVHG 79 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~~~~~~~~ 79 (135)
+|+++|++++|||||++++.+.... ..++.+.. + .. . .+||+||.......+ ...++.+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~v~-----~--~~--~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQAVE-----F--ND--K----GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceEEE-----E--CC--C----CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 7999999999999999998864321 11222221 1 11 1 279999973222111 234689999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 80 IIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+++|+|.++.+++ +..|+..+. .+.|+++++||+|..
T Consensus 68 il~v~d~~~~~s~--~~~~~~~~~-----~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 68 LIYVHGANDPESR--LPAGLLDIG-----VSKRQIAVISKTDMP 104 (158)
T ss_pred EEEEEeCCCcccc--cCHHHHhcc-----CCCCeEEEEEccccC
Confidence 9999999988776 334655541 257899999999953
No 197
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=2.2e-16 Score=113.61 Aligned_cols=112 Identities=17% Similarity=0.114 Sum_probs=74.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch-----------
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW----------- 70 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------- 70 (135)
++++++|.+++|||||++++++.... ....+....+ ........ ....+.+|||||..++....
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~--~~~~~~~~--~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD--SIDIPFER--NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceEC--cEeEEEEE--CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 68999999999999999999986532 1111222211 21122111 23378999999976544321
Q ss_pred HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
..+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|..
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccC
Confidence 23578999999999999887765543 3333322 268999999999963
No 198
>PRK10218 GTP-binding protein; Provisional
Probab=99.72 E-value=2.9e-16 Score=116.39 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=82.7
Q ss_pred EEEEEECCCCCChHHHHHHHhc--CCCCCC------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc
Q psy10117 3 IKILILGPIMAGKTVLANALCD--LTTAEE------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES 68 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~--~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 68 (135)
-||+++|+.++|||||+.+|+. +.+... .+.+.|.++....... +....++++||+||+..|..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i--~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI--KWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE--ecCCEEEEEEECCCcchhHH
Confidence 3899999999999999999996 322211 2334555544433332 23568999999999999999
Q ss_pred chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
.+..+++.+|++++|+|+.+.... ....++..+.. .++|.+++.||+|..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~ 133 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRP 133 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCC
Confidence 999999999999999999875432 23333443322 267889999999953
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=2.4e-16 Score=119.33 Aligned_cols=111 Identities=19% Similarity=0.115 Sum_probs=73.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--------cccchHHhh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--------FESVWPAFQ 74 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 74 (135)
.+|+++|.++||||||+++|++.... ....+.|.+......... .....+.+|||+|.+. +......++
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~-iv~~~pGvT~d~~~~~~~--~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREA-VVEDTPGVTRDRVSYDAE--WAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCeeEEEEEEEEE--ECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 58999999999999999999986532 122233332222221111 1345789999999763 233345568
Q ss_pred ccCcEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 75 RDVHGIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+.+|++++|+|.++.- .... .|...+.. .+.|+++|+||+|.
T Consensus 353 ~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~----~~~pvIlV~NK~D~ 395 (712)
T PRK09518 353 SLADAVVFVVDGQVGL--TSTDERIVRMLRR----AGKPVVLAVNKIDD 395 (712)
T ss_pred HhCCEEEEEEECCCCC--CHHHHHHHHHHHh----cCCCEEEEEECccc
Confidence 8999999999997642 2332 34444432 36899999999995
No 200
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=1.7e-16 Score=108.15 Aligned_cols=114 Identities=14% Similarity=0.159 Sum_probs=72.3
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCC----------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc---
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEE----------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE--- 67 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--- 67 (135)
+.++|+++|++|+|||||++++++...... ..+|.+........ ..++..+++++|||||-..+.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i--~~~g~~~~l~iiDTpGfgd~~~~~ 80 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEI--EENGVKLKLTVIDTPGFGDNINNS 80 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEE--EECCEEEEEEEEecCCccccccch
Confidence 478999999999999999999998876532 23333333333332 344567899999999932211
Q ss_pred -----------------------cchHHhhc--cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 68 -----------------------SVWPAFQR--DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 68 -----------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
..+...+. ++|+++|+++.+.. .+... ...++.+. . .+|+++|+||+|
T Consensus 81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~--~v~vi~VinK~D 154 (276)
T cd01850 81 DCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---K--RVNIIPVIAKAD 154 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---c--cCCEEEEEECCC
Confidence 11112233 46777888776542 22222 33344442 1 589999999999
Q ss_pred C
Q psy10117 122 G 122 (135)
Q Consensus 122 ~ 122 (135)
.
T Consensus 155 ~ 155 (276)
T cd01850 155 T 155 (276)
T ss_pred c
Confidence 5
No 201
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.71 E-value=1.5e-16 Score=104.46 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=69.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCC-----------------------------ccCCcceeEEEEEeeeecCCceEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEE-----------------------------YHPTQGVRIVECEHSYALDTSKTE 54 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~~ 54 (135)
||+++|.+++|||||+++|+...-.-. .+...|.+...... ........
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~--~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYR--YFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeeccee--EEecCCce
Confidence 689999999999999999975321100 00001111111111 11124558
Q ss_pred EEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+.+|||||++.|.......++.+|++++|+|.+++..- ........+ ...+ ..++++|.||+|.
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~-~~~~--~~~iIvviNK~D~ 142 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYIL-SLLG--IRHVVVAVNKMDL 142 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHH-HHcC--CCcEEEEEEchhc
Confidence 89999999988766666778899999999999875321 112211212 1211 2468889999995
No 202
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=8.2e-16 Score=92.15 Aligned_cols=104 Identities=23% Similarity=0.195 Sum_probs=66.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc---------chH
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES---------VWP 71 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~ 71 (135)
||+++|.+|+|||||+++|++.... .....|....+..+.. ....+.++|+||-..... ...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~------~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~ 74 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY------NNKKFILVDTPGINDGESQDNDGKEIRKFL 74 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE------TTEEEEEEESSSCSSSSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee------ceeeEEEEeCCCCcccchhhHHHHHHHHHH
Confidence 6999999999999999999985322 2223333332222222 445668999999532111 122
Q ss_pred HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEec
Q psy10117 72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV 119 (135)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 119 (135)
..+..+|++++|+|..++.. +.....+..+ + .+.|+++|.||
T Consensus 75 ~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 75 EQISKSDLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp HHHCTESEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred HHHHHCCEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 23478999999999776321 2233344444 1 37899999998
No 203
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=4e-16 Score=110.62 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=78.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc----c---hHHhh
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES----V---WPAFQ 74 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~~~~ 74 (135)
.|.|+|.|+||||||+|+|++.+.... ...|.......+.. .....+.++|+||...-.. + .-..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~-----~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV-----DDERSFVVADIPGLIEGASEGAGLGIRFLKHL 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe-----CCCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence 689999999999999999998654321 12232322222222 1234689999999643211 1 12346
Q ss_pred ccCcEEEEEEeCC---CcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 75 RDVHGIIFVFNSG---VPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 75 ~~~~~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
++++++++|+|++ +.+.++.+..|++++..+.. +.+.|+++|+||+|.
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 7899999999998 55678888888888876432 246899999999995
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.70 E-value=2.8e-16 Score=116.39 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=82.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC--CCCCC------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117 4 KILILGPIMAGKTVLANALCDL--TTAEE------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV 69 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~--~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 69 (135)
+|+++|+.++|||||+.+|+.. .+... .+...|.++........ ....++++|||||+..|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~--~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR--YNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE--ECCEEEEEEECCCHHHHHHH
Confidence 7999999999999999999863 22111 12233444433322222 25689999999999999988
Q ss_pred hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+++.+|++++|+|+.+. .......|+..+... ++|+++|+||+|.
T Consensus 81 v~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~----~ip~IVviNKiD~ 128 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL----GLKPIVVINKIDR 128 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC----CCCEEEEEECCCC
Confidence 99999999999999999864 345556676666442 5789999999995
No 205
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.70 E-value=1.7e-16 Score=103.87 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=71.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCC---CCC--ccCCcceeEEEEEee-------------------e--e----c--CC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTT---AEE--YHPTQGVRIVECEHS-------------------Y--A----L--DT 50 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~---~~~--~~~t~~~~~~~~~~~-------------------~--~----~--~~ 50 (135)
++|.++|+.|+|||||+..+.+... +.+ ...++...+..+... . . . ..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976521 111 111111111111111 0 0 0 00
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc----chHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP----GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
....+.+||+||++.+.......+..+|++++|+|++++ .+++.+..| .. .+ ..|+++|+||+|.
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~-~~--~~~iiivvNK~Dl 149 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EI-MG--LKHIIIVQNKIDL 149 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HH-cC--CCcEEEEEEchhc
Confidence 126889999999998877777777889999999999874 233333222 11 11 2479999999995
No 206
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.70 E-value=3.2e-16 Score=98.80 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=70.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----------cccchHHh
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----------FESVWPAF 73 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~~ 73 (135)
+|+++|++|+|||||++.+.++.......++.+.+........ ...+.+||+||... +......|
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~ 75 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-----NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEY 75 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-----cCeEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence 4899999999999999999965555545555554332222211 11889999999432 33334445
Q ss_pred hc---cCcEEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QR---DVHGIIFVFNSGVPGH--ISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~---~~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+. +.+++++++|..+..+ ...+..|+... ..|+++++||+|.
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-------~~~vi~v~nK~D~ 122 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-------GIPFLVVLTKADK 122 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-------CCCEEEEEEchhc
Confidence 54 4578899999876532 23344555443 4799999999995
No 207
>PRK00089 era GTPase Era; Reviewed
Probab=99.70 E-value=6.3e-16 Score=106.25 Aligned_cols=109 Identities=24% Similarity=0.166 Sum_probs=69.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCC-ccC-CcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------chHHh
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEE-YHP-TQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------VWPAF 73 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~ 73 (135)
.|+++|++|||||||+|++++...... ..+ |......... .. ....+.+|||||...... .....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~---~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV---TE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE---Ec--CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 589999999999999999998764321 111 1111111111 11 336899999999654332 22335
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+.++|++++|+|+++. +.....++...... .+.|+++|+||+|.
T Consensus 82 ~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl 125 (292)
T PRK00089 82 LKDVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDL 125 (292)
T ss_pred HhcCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcC
Confidence 6789999999999883 22233333332221 25899999999996
No 208
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.69 E-value=4.1e-16 Score=112.15 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=72.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCC--------------------------C---ccCCcceeEEEEEeeeecCCce
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAE--------------------------E---YHPTQGVRIVECEHSYALDTSK 52 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~--------------------------~---~~~t~~~~~~~~~~~~~~~~~~ 52 (135)
.++|+++|+.++|||||+++|+...-.- + .+...|.+...... ..+...
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~~~~ 83 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFETDK 83 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEecCC
Confidence 4789999999999999999998432110 0 00011221111111 112256
Q ss_pred EEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHH-HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 53 TEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE-LLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+++||+||++.|.......++.+|++++|+|+++..++.. ...++..+ ...+ ..|+++++||+|.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~--~~~iivviNK~Dl 151 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLG--INQLIVAINKMDA 151 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcC--CCeEEEEEEcccc
Confidence 789999999998886655556789999999999987322222 22222222 2222 3479999999995
No 209
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=4.5e-16 Score=96.95 Aligned_cols=108 Identities=21% Similarity=0.181 Sum_probs=72.2
Q ss_pred EECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-------hHHhhccCc
Q psy10117 7 ILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-------WPAFQRDVH 78 (135)
Q Consensus 7 viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~~~~ 78 (135)
++|+.|+|||||++++.+.... ....+............. .....+.+||+||...+... ...+++.+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL---GPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe---cCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 5899999999999999986543 111111111111111111 12568999999997765433 334788999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|+|..+..+..... |+..... .+.|+++|+||+|.
T Consensus 78 ~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~ 116 (163)
T cd00880 78 LILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDL 116 (163)
T ss_pred EEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEcccc
Confidence 999999999887765554 3333322 37899999999994
No 210
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.69 E-value=1.2e-15 Score=98.62 Aligned_cols=112 Identities=20% Similarity=0.129 Sum_probs=78.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC--------------------ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE--------------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
.+|+++|+.++|||||+.+|+....... ..-|.......+. .......+++.|+||
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~----~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE----KNENNRKITLIDTPG 79 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE----BTESSEEEEEEEESS
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc----ccccccceeeccccc
Confidence 5899999999999999999996542211 1222222222222 123678999999999
Q ss_pred CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+..|.......++.+|++++|+|+.+.-.. .....+..+.. .+.|+++|.||+|.-
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLI 135 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSS
T ss_pred ccceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccch
Confidence 999988888889999999999999876432 23333333322 267899999999963
No 211
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.69 E-value=2e-16 Score=113.73 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=74.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC--CCCC-----------------------------CccCCcceeEEEEEeeeecCC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL--TTAE-----------------------------EYHPTQGVRIVECEHSYALDT 50 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (135)
.++|+++|+.++|||||+.+|+.. .... +...+++.+.....+ ..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~----~~ 82 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF----ET 82 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE----cc
Confidence 478999999999999999999852 1110 001122222222222 22
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHH--HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISEL--LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
....+++||+||++.|.......+..+|++++|+|+++.+++... ..++. +.+..+ ..|+++++||+|.
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~--~~~iIVviNK~Dl 153 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG--INQLIVAINKMDS 153 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC--CCeEEEEEEChhc
Confidence 467899999999998876666667899999999999987643211 12222 222222 4589999999996
No 212
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=2.4e-16 Score=115.38 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=76.9
Q ss_pred EEEEEECCCCCChHHHHHHHhc--CCCC--C-------------C---ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCD--LTTA--E-------------E---YHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~--~~~~--~-------------~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
-+|+++|+.++|||||+.+|+. +... . + .....|.++....... +.....+++|||||
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~--~~~~~~inliDTPG 88 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF--PYRDCLINLLDTPG 88 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE--EECCEEEEEEECCC
Confidence 3899999999999999999973 1100 0 0 0111222222221111 12567899999999
Q ss_pred CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc
Q psy10117 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRG 124 (135)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 124 (135)
++.|......+++.+|++++|+|.++.-. .....++.... ..++|+++++||+|...
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~----~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCR----LRDTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHH----hcCCCEEEEEECCcccc
Confidence 99998878888999999999999987532 22333333332 23789999999999543
No 213
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=6.5e-16 Score=116.99 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=73.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----------cccch-
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----------FESVW- 70 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~- 70 (135)
+||+++|.++||||||++++++.... ....+..+.+........ ....+.+|||+|..+ +..+.
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~----~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI----DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE----CCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 68999999999999999999987642 121222222222222222 223567999999532 11111
Q ss_pred HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+++.+|++++|+|.++..++..+.. +..+.. .+.|+++|+||+|.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~----~~~piIiV~NK~DL 573 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD----AGRALVLVFNKWDL 573 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH----cCCCEEEEEEchhc
Confidence 234678999999999999887766643 333322 26899999999995
No 214
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=9.8e-16 Score=104.17 Aligned_cols=113 Identities=22% Similarity=0.194 Sum_probs=74.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCC----Cc--cCC----------cceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAE----EY--HPT----------QGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~----~~--~~t----------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|+++|++|+|||||+++++...-.. .. ..+ .+........ ........+++||+||...|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~--~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVA--PLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeE--EEEECCEEEEEEECcCHHHHH
Confidence 58999999999999999997532110 00 000 0111100000 111245789999999998887
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
.....+++.+|++++|+|.++.........| ..+.. .++|.+++.||+|..
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~----~~~p~iivvNK~D~~ 129 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE----AGIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCccC
Confidence 7788899999999999999886654333333 22221 268999999999954
No 215
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.68 E-value=2.6e-15 Score=100.16 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=55.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCC-Ccc-CCcceeEEEEEeeeecCCceEEEEEEecCCCcccc----c---chHHhh
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAE-EYH-PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE----S---VWPAFQ 74 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----~---~~~~~~ 74 (135)
+++++|++|+|||||++++.+..... .+. .|.......+.. ....+++||+||..... . ....++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~------~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~ 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY------KGAKIQLLDLPGIIEGAADGKGRGRQVIAVA 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE------CCeEEEEEECCCcccccccchhHHHHHHHhh
Confidence 79999999999999999999865321 111 222222112222 45689999999974332 1 233468
Q ss_pred ccCcEEEEEEeCCCcc
Q psy10117 75 RDVHGIIFVFNSGVPG 90 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~ 90 (135)
+++|++++|+|++++.
T Consensus 76 ~~ad~il~V~D~t~~~ 91 (233)
T cd01896 76 RTADLILMVLDATKPE 91 (233)
T ss_pred ccCCEEEEEecCCcch
Confidence 8999999999998765
No 216
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.67 E-value=2e-15 Score=114.66 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=75.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc----------hH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV----------WP 71 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~ 71 (135)
+++|+++|.++||||||+|++++.... .....|.+........ ......+++||+||...+... ..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~--~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQF--STTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEE--EcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 579999999999999999999987543 2233344332222222 225568999999998765421 12
Q ss_pred Hhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.++ .++|++++|+|.++.+. ..+|..++.+. +.|++++.||+|.
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~----giPvIvVlNK~Dl 124 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLER---NLYLTLQLLEL----GIPCIVALNMLDI 124 (772)
T ss_pred HHHhccCCCEEEEEecCCcchh---hHHHHHHHHHc----CCCEEEEEEchhh
Confidence 233 47999999999987543 33455555332 6899999999994
No 217
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=1.2e-15 Score=115.27 Aligned_cols=111 Identities=23% Similarity=0.194 Sum_probs=80.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-------------C-------CccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-------------E-------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-------------~-------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
.||+++|+.++|||||+++|+...-. . ....|+......+.. ....+++|||||
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~------~~~~i~liDtPG 82 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW------DNHRINLIDTPG 82 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE------CCEEEEEEECCC
Confidence 48999999999999999999853210 0 122233322222222 567999999999
Q ss_pred CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc
Q psy10117 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRG 124 (135)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 124 (135)
+..|...+..+++.+|++++|+|.++.........| ..+.. .++|+++++||+|...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence 999988899999999999999999987766555444 33322 2689999999999543
No 218
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.67 E-value=5.9e-16 Score=109.27 Aligned_cols=110 Identities=18% Similarity=0.076 Sum_probs=76.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc---------cch
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE---------SVW 70 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~ 70 (135)
..|+++|.|+||||||+|+|++.... ..+..|.+..+..... ....+.+.||+|-+... ...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~------~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa 77 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW------LGREFILIDTGGLDDGDEDELQELIREQA 77 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE------cCceEEEEECCCCCcCCchHHHHHHHHHH
Confidence 56999999999999999999997654 3344444444444443 45579999999965322 233
Q ss_pred HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
...+..||+++||+|....-+ ...+.+.++.+. .+.|+++|.||+|..
T Consensus 78 ~~Ai~eADvilfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~ 125 (444)
T COG1160 78 LIAIEEADVILFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNL 125 (444)
T ss_pred HHHHHhCCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCc
Confidence 445679999999999866433 233444444331 268999999999964
No 219
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=6.5e-16 Score=113.18 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=77.0
Q ss_pred EEEEEECCCCCChHHHHHHHhc-CCCCC----------------C---ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCD-LTTAE----------------E---YHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~-~~~~~----------------~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
.+|+++|..++|||||+++|+. ..... + .+...|.++...... .+.....+++|||||
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~--~~~~~~~inliDTPG 89 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQ--FPYRDCLVNLLDTPG 89 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEE--EeeCCeEEEEEECCC
Confidence 4899999999999999999863 11110 0 111223332222121 223568999999999
Q ss_pred CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc
Q psy10117 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRG 124 (135)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 124 (135)
+..|.......++.+|++++|+|.++.- ......++.... . .++|+++++||+|...
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~-~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTR-L---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHH-h---cCCCEEEEEECccccC
Confidence 9988877788899999999999987642 122344444332 2 3689999999999543
No 220
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=4.6e-15 Score=107.00 Aligned_cols=111 Identities=18% Similarity=0.131 Sum_probs=72.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-----------h
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-----------W 70 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~ 70 (135)
++|+++|.+++|||||++++++.... ....+ |.+.......... ....+.+|||||....... .
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~--gtt~~~~~~~~~~--~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEERVIVSDIA--GTTRDSIDTPFER--DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCC--CceEEEEEEEEEE--CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 79999999999999999999976421 22222 2222222222211 3456889999996432221 1
Q ss_pred HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|.
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl 296 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDL 296 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccC
Confidence 23577999999999999887655443 3333322 25799999999995
No 221
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.65 E-value=3.6e-15 Score=101.30 Aligned_cols=113 Identities=19% Similarity=0.133 Sum_probs=74.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC--C--C---------C---ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT--A--E---------E---YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~--~--~---------~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|+++|.+++|||||+++|+...- . . + .+...|.+....... ......+++++||||+..|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~--~~~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATT--CFWKDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEE--EEECCEEEEEEECCCcHHHH
Confidence 589999999999999999974211 0 0 0 001112222111111 11246789999999999888
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
..+...++.+|++++|+|..+...- .....+..+.. .+.|++++.||+|..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~ 129 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR----YNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCC
Confidence 8889999999999999999775322 12233333322 257999999999954
No 222
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.65 E-value=2.8e-15 Score=111.28 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc------hHHhh--ccCcEE
Q psy10117 9 GPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV------WPAFQ--RDVHGI 80 (135)
Q Consensus 9 G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~~~~ 80 (135)
|.+|||||||+|++.+........++.+.+........ ....+++||+||+..+... ...++ +++|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~----~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF----QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE----CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence 89999999999999987664444454444433333322 2346899999998876543 33343 378999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++|+|.++.+ +..++..++.+ .+.|+++|+||+|.
T Consensus 77 I~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 77 VNVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDE 111 (591)
T ss_pred EEEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHH
Confidence 9999998743 22344444432 26899999999994
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.64 E-value=3.2e-15 Score=98.89 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=70.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC-----------------------------CCccCCcceeEEEEEeeeecCCceEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA-----------------------------EEYHPTQGVRIVECEHSYALDTSKTE 54 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~~~ 54 (135)
+|+++|+.++|||||+.+|+...-. ...+...|.+....... ......+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~--~~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAK--FETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEE--EeeCCeE
Confidence 5899999999999999998632100 00000112111111111 1125678
Q ss_pred EEEEecCCCcccccchHHhhccCcEEEEEEeCCCcch---H---HHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGH---I---SELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+++||+||+..|.......++.+|++++|+|+++... | ......+... ... ...|++++.||+|..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~ 150 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccc
Confidence 9999999988777666667788999999999988521 1 1122222222 121 236899999999964
No 224
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.63 E-value=1e-14 Score=101.28 Aligned_cols=71 Identities=23% Similarity=0.327 Sum_probs=61.6
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc----------chHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP----------GHISELLLFYDYFVTQSDLNNHKCLLIDNVK 120 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 120 (135)
..+.+.+||++|+...+..|.++|.++++++||+|+++- ..+.+....+..+.+.....+.|++|++||+
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457889999999999999999999999999999999873 3466667777777777766789999999999
Q ss_pred C
Q psy10117 121 P 121 (135)
Q Consensus 121 D 121 (135)
|
T Consensus 239 D 239 (317)
T cd00066 239 D 239 (317)
T ss_pred H
Confidence 9
No 225
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=8.3e-15 Score=93.81 Aligned_cols=104 Identities=19% Similarity=0.311 Sum_probs=73.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC----CCccCCcceeEEEEEeeeecCCceEEEEEEecCC----------Cccccc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA----EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFES 68 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~ 68 (135)
.-|+++|.++||||||||.|+++... .++..|...+++.+.. .+.+.|.|| ++.+..
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---------~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---------ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---------cEEEEeCCCcccccCCHHHHHHHHH
Confidence 36899999999999999999997633 3444555555544333 388999999 345556
Q ss_pred chHHhhc---cCcEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 69 VWPAFQR---DVHGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 69 ~~~~~~~---~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+...|++ +-.+++.+.|...+-.- .++-+|+.+. ++|++|+.||+|.
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-------~i~~~vv~tK~DK 147 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-------GIPVIVVLTKADK 147 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-------CCCeEEEEEcccc
Confidence 6666775 35688888898765432 1223454443 7999999999993
No 226
>KOG0090|consensus
Probab=99.62 E-value=2.6e-15 Score=96.50 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=81.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhc---cCcEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR---DVHGI 80 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~~ 80 (135)
.|+++|+.+||||+|+..|..+...+++ +++..+...+.. ..-..++.|.||+.+.+.....++. .+-++
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-tSiepn~a~~r~------gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTV-TSIEPNEATYRL------GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCee-eeeccceeeEee------cCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 5899999999999999999998665443 333333333333 1123899999999999888888887 79999
Q ss_pred EEEEeCCC-cchHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGV-PGHISELLLFYDYFVTQS--DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D~ 122 (135)
|||+|... +.-...+.+++-++.... ....+|+++++||.|.
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl 157 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL 157 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence 99999753 333555555555554433 3457899999999993
No 227
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.60 E-value=2e-14 Score=108.67 Aligned_cols=113 Identities=19% Similarity=0.110 Sum_probs=75.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC----CCccC------------CcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA----EEYHP------------TQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~----~~~~~------------t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|+++|..++|||||+++|+...-. ..... ..|.+........ ......+++|||||+..+.
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~--~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 12 NIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTV--FWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEE--EECCeEEEEEECCCCcchh
Confidence 8999999999999999999742110 00000 1122111111111 1146789999999999888
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
.....+++.+|++++|+|..+........ ++..+.. .+.|+++++||+|..
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~ 140 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR----YEVPRIAFVNKMDKT 140 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH----cCCCEEEEEECCCCC
Confidence 88888999999999999998765543332 2233322 258999999999953
No 228
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.60 E-value=1.1e-14 Score=104.24 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=73.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCC---C--ccCCcceeEEEEE--------------eeeecC------CceEEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAE---E--YHPTQGVRIVECE--------------HSYALD------TSKTEIE 56 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~---~--~~~t~~~~~~~~~--------------~~~~~~------~~~~~~~ 56 (135)
+++|+++|..++|||||+++|.+..... + ..-|+...+..+. .....+ .....++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 5799999999999999999997532211 1 0111111111111 000000 1246899
Q ss_pred EEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 57 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+||+||++.|...+......+|++++|+|+++.....+..+.+..+. ..+ ..|+++++||+|.
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g--i~~iIVvvNK~Dl 146 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG--IKNIVIVQNKIDL 146 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC--CCeEEEEEEcccc
Confidence 99999999998777777888999999999986431122223333221 111 3478999999995
No 229
>COG1159 Era GTPase [General function prediction only]
Probab=99.59 E-value=3.1e-14 Score=95.92 Aligned_cols=108 Identities=21% Similarity=0.173 Sum_probs=70.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH--------
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA-------- 72 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------- 72 (135)
-|+++|.|+||||||+|++.+.+..- ..+.|.- ...--... ....+-+.||||-...+.....
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~----~I~GI~t~--~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN----RIRGIVTT--DNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhh----heeEEEEc--CCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 47899999999999999999987542 1122211 11111111 4668899999996544332222
Q ss_pred hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+.++|.++||.|.+++- ..-.+|+-+..+. .+.|++++.||.|.
T Consensus 82 sl~dvDlilfvvd~~~~~--~~~d~~il~~lk~---~~~pvil~iNKID~ 126 (298)
T COG1159 82 ALKDVDLILFVVDADEGW--GPGDEFILEQLKK---TKTPVILVVNKIDK 126 (298)
T ss_pred HhccCcEEEEEEeccccC--CccHHHHHHHHhh---cCCCeEEEEEcccc
Confidence 356899999999998743 2233444333222 26899999999994
No 230
>KOG1489|consensus
Probab=99.59 E-value=7.9e-15 Score=99.35 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=85.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCC----cccccchHHh
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD----HKFESVWPAF 73 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~ 73 (135)
.+-++|-|++|||||++.++..++. ++..|.+|...+. ....+.+=|.||. ...+.+-..|
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd---------df~q~tVADiPGiI~GAh~nkGlG~~F 268 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD---------DFSQITVADIPGIIEGAHMNKGLGYKF 268 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc---------ccceeEeccCccccccccccCcccHHH
Confidence 4569999999999999999987654 2344555522111 2334899999983 3344444555
Q ss_pred h---ccCcEEEEEEeCCCc---chHHHHHHHHHHHHhc-cCCCCceEEEEEecCCCCcccccccccc
Q psy10117 74 Q---RDVHGIIFVFNSGVP---GHISELLLFYDYFVTQ-SDLNNHKCLLIDNVKPGRGDSSGHAHSL 133 (135)
Q Consensus 74 ~---~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~D~~~~~~~~l~~l 133 (135)
+ ++|..++||+|++.. +.++.++.+..++..+ ..+.+.|.++|+||+|....+...+++|
T Consensus 269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L 335 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSL 335 (366)
T ss_pred HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHH
Confidence 4 479999999999998 7888888888777764 4456889999999999743333334444
No 231
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.58 E-value=7.5e-14 Score=99.00 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=74.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH-------
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA------- 72 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~------- 72 (135)
+|++++|.|++|||||+|.|++.... +-...|.++-...+.. ..+.+.+.||.|........+.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i------~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL------NGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE------CCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 68999999999999999999987543 2233444433333333 7789999999996654443333
Q ss_pred -hhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 -FQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 -~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..++||.+++|+|.+.+. ..+....+ ....+.|+++|.||.|.
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL 336 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADL 336 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhc
Confidence 467999999999999862 22222222 11237899999999994
No 232
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.57 E-value=5.2e-14 Score=91.54 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=74.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-----------C---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-----------E---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-----------~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
.++|+++|..++|||||+++|+..... . ..+...|.+....... .+.....+.+.||||+..|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~--~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVE--YETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeE--ecCCCeEEEEEECcCHHHHH
Confidence 478999999999999999999864110 0 0111223322222221 12245678999999998887
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
......+..+|++++|+|....-. ......+..+... +.| ++++.||+|.
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~----~~~~iIvviNK~D~ 130 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV----GVPYIVVFLNKADM 130 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCcEEEEEeCCCC
Confidence 767777889999999999876432 2223333333222 455 7899999995
No 233
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.57 E-value=1.9e-14 Score=109.15 Aligned_cols=114 Identities=24% Similarity=0.136 Sum_probs=76.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC---------------CCCC---ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT---------------TAEE---YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~---------------~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 64 (135)
.||+++|+.++|||||+.+|+... +... ...|+......... ..++..+.+++|||||+.
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~--~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH--EYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE--eecCCceEEEEEeCCCcc
Confidence 389999999999999999997521 1110 12233222212111 123467899999999999
Q ss_pred ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 65 KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
.|.......++.+|++++|+|..+.-.......| ..+.. .+.|.+++.||+|..
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK----ENVKPVLFINKVDRL 151 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH----cCCCEEEEEEChhcc
Confidence 9988888899999999999998774322222222 22211 256788999999953
No 234
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.57 E-value=3.5e-14 Score=105.82 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=70.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCC---CCCCc--cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCc
Q psy10117 4 KILILGPIMAGKTVLANALCDLT---TAEEY--HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVH 78 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 78 (135)
-|.++|..++|||||+++|.+.. .+.+. ..|+...+..+.. .....+++||+||++.|.......+..+|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~-----~~g~~i~~IDtPGhe~fi~~m~~g~~~~D 76 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ-----PDGRVLGFIDVPGHEKFLSNMLAGVGGID 76 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec-----CCCcEEEEEECCCHHHHHHHHHHHhhcCC
Confidence 47899999999999999998632 22222 2232222222111 12345899999999998776777788999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
++++|+|+++.-. ....+.+..+ ... +.| ++||.||+|.
T Consensus 77 ~~lLVVda~eg~~-~qT~ehl~il-~~l---gi~~iIVVlNKiDl 116 (614)
T PRK10512 77 HALLVVACDDGVM-AQTREHLAIL-QLT---GNPMLTVALTKADR 116 (614)
T ss_pred EEEEEEECCCCCc-HHHHHHHHHH-HHc---CCCeEEEEEECCcc
Confidence 9999999887321 1222222222 211 344 6899999995
No 235
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.54 E-value=8e-14 Score=99.84 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=68.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC---CC--ccCCcceeEEEEEee--------------eecC------CceEEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA---EE--YHPTQGVRIVECEHS--------------YALD------TSKTEIE 56 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~---~~--~~~t~~~~~~~~~~~--------------~~~~------~~~~~~~ 56 (135)
.++|+++|+.++|||||+.+|.+.... .+ ...|+...+...... ...+ .....++
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 478999999999999999999653111 11 112222211111110 0000 1136899
Q ss_pred EEecCCCcccccchHHhhccCcEEEEEEeCCCcc----hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG----HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 57 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+||+||++.|..........+|++++|+|++++. +.+.+. .+. ..+ ..|+++|+||+|.
T Consensus 89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~-~~~--i~~iiVVlNK~Dl 151 (411)
T PRK04000 89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALD-IIG--IKNIVIVQNKIDL 151 (411)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcC--CCcEEEEEEeecc
Confidence 9999999887654444455679999999998643 233222 221 111 2478999999995
No 236
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=2e-13 Score=97.47 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=71.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCC-----------C-C--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTT-----------A-E--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~-----------~-~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
.++|+++|..++|||||+++|++... . . ..+...|.+........ +.....+.+||+||++.|.
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~--~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY--ETENRHYAHVDCPGHADYV 89 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE--cCCCEEEEEEECCchHHHH
Confidence 46899999999999999999974210 0 0 01111232222222221 2245678999999999886
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceE-EEEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKC-LLIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~ 122 (135)
.........+|++++|+|+.+...- ...+.+..+... ++|. +++.||+|.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~----gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQV----GVPYIVVFLNKCDM 140 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCEEEEEEEeccc
Confidence 6555556788999999999874322 222333333222 4564 578999995
No 237
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=7e-14 Score=95.26 Aligned_cols=109 Identities=20% Similarity=0.225 Sum_probs=71.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC-CCccCC-cceeEEEEEeeeecCCceEEEEEEecCCC-c-----ccccchHH--h
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA-EEYHPT-QGVRIVECEHSYALDTSKTEIELWDTSGD-H-----KFESVWPA--F 73 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-~-----~~~~~~~~--~ 73 (135)
-|+|.|.|+||||||++.+++.++. ..|.-| .++..-.+.. ....+++.||||. + +..-..+. .
T Consensus 170 TivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~------~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER------GYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred eEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec------CCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 5899999999999999999997654 223222 2333333333 5568999999993 2 22111111 1
Q ss_pred hc-cCcEEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 74 QR-DVHGIIFVFNSGVPGH--ISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 74 ~~-~~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
++ -+++++|++|.+.... .+.=..+++++...- +.|+++|.||.|
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D 291 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKID 291 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEeccc
Confidence 22 4688999999986554 344345666664332 489999999999
No 238
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.53 E-value=1.9e-13 Score=88.94 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=67.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-------chH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-------VWP 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~ 71 (135)
.+|+++|.+|+|||||+|.+++....... ..|.......... ....+.+.||||-..... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~------~~~~i~viDTPG~~d~~~~~~~~~~~i~ 74 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW------DGRRVNVIDTPGLFDTSVSPEQLSKEIV 74 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE------CCeEEEEEECcCCCCccCChHHHHHHHH
Confidence 47999999999999999999987543221 2233322222222 445899999999543311 111
Q ss_pred ----HhhccCcEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 ----AFQRDVHGIIFVFNSGVPGH-ISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ----~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
....+.|++++|.++.+... ...+..++.++..... -.+++++.|++|.
T Consensus 75 ~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~ 128 (196)
T cd01852 75 RCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKV--LDHTIVLFTRGDD 128 (196)
T ss_pred HHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHh--HhcEEEEEECccc
Confidence 11346899999999876221 2222334433322111 2588899999984
No 239
>PRK12735 elongation factor Tu; Reviewed
Probab=99.53 E-value=2.3e-13 Score=97.18 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=72.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCC-----------C---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTT-----------A---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~-----------~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
.++|+++|..++|||||+++|++... . ...+...|.+........ +.....+.++|+||++.|.
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~--~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY--ETANRHYAHVDCPGHADYV 89 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE--cCCCcEEEEEECCCHHHHH
Confidence 46899999999999999999986210 0 001112233322222211 1244578999999998876
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEE-EEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL-LIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~ 122 (135)
......+..+|++++|+|..+... ....+++..+.. .++|.+ ++.||+|.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl 140 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDM 140 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCC
Confidence 656666778999999999987432 222333333322 246755 67999995
No 240
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.53 E-value=8.3e-14 Score=83.94 Aligned_cols=88 Identities=10% Similarity=0.008 Sum_probs=67.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCcc-CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYH-PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
+|++++|+.|+|||+|+.++....+...+. ++.+ +......+++.+++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------------~~~~~~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------------IDVYDPTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------------hhhccccccCCCCEEE
Confidence 589999999999999999998776643332 3333 2223345667889999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.||+..+.++++.+ |...+....+ .++|.++++||.|.
T Consensus 52 ~v~~~~~~~s~~~~--~~~~i~~~~k-~dl~~~~~~nk~dl 89 (124)
T smart00010 52 QCWRVDDRDSADNK--NVPEVLVGNK-SDLPILVGGNRDVL 89 (124)
T ss_pred EEEEccCHHHHHHH--hHHHHHhcCC-CCCcEEEEeechhh
Confidence 99999999998766 8877765543 47899999999994
No 241
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.51 E-value=2.8e-13 Score=89.85 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=70.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCcc----------------CC-------cceeEEE----EEee-------eecC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYH----------------PT-------QGVRIVE----CEHS-------YALD 49 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~----------------~t-------~~~~~~~----~~~~-------~~~~ 49 (135)
||+++|+.++|||||+.++..+.+.+... -+ .|.+... +... ...+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999766542110 00 1111000 0000 0011
Q ss_pred CceEEEEEEecCCCcccccchHHhhc--cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 50 TSKTEIELWDTSGDHKFESVWPAFQR--DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 50 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.....+++.|+||++.|.......+. .+|++++|+|+..... .....++..+.. .++|+++|.||+|.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~ 150 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDL 150 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccc
Confidence 23467899999999888654444443 6899999999876533 222334443322 25789999999994
No 242
>PRK12736 elongation factor Tu; Reviewed
Probab=99.50 E-value=3.7e-13 Score=96.05 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=72.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCC--------------CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAE--------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
.++|+++|+.++|||||+.+|++..... ..+...|.+........ +.....+.++|+||++.|.
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~--~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY--ETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe--cCCCcEEEEEECCCHHHHH
Confidence 4689999999999999999998632100 01112233332222222 1245578999999998886
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
.....-...+|++++|+|..+... ....+++..+... ++| ++++.||+|.
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~----g~~~~IvviNK~D~ 140 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV----GVPYLVVFLNKVDL 140 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc----CCCEEEEEEEecCC
Confidence 655666678999999999876422 1222333333222 466 6789999995
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=99.49 E-value=5.5e-13 Score=96.90 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=75.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC------CCC--------CccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT------TAE--------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES 68 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~------~~~--------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 68 (135)
++|+++|..++|||||+++|+... ... ..+...|.+........ +.....++++|+||++.|-.
T Consensus 82 ~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~--~~~~~~i~liDtPGh~~f~~ 159 (478)
T PLN03126 82 VNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEY--ETENRHYAHVDCPGHADYVK 159 (478)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEE--ecCCcEEEEEECCCHHHHHH
Confidence 689999999999999999999521 100 11222333322221111 12455889999999998877
Q ss_pred chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
.....+..+|++++|+|..+... ....+++..+... ++| ++++.||+|.
T Consensus 160 ~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~----gi~~iIvvvNK~Dl 209 (478)
T PLN03126 160 NMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV----GVPNMVVFLNKQDQ 209 (478)
T ss_pred HHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEecccc
Confidence 67777789999999999886533 2234444444322 567 7889999995
No 244
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.49 E-value=8e-14 Score=97.66 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=60.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhh-----cc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQ-----RD 76 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~-----~~ 76 (135)
+++|+|+|++|+|||||||.|.+-.....-....|...++.....+..+..-.+.+||.||-.........|+ ..
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~ 114 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYR 114 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccc
Confidence 6899999999999999999998754332222222221111111111112334689999999654333344444 46
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 77 VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 77 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.|.+|++.+ +.|....-|+..-.+.. +.|+.+|-+|+|.
T Consensus 115 yD~fiii~s----~rf~~ndv~La~~i~~~---gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 115 YDFFIIISS----ERFTENDVQLAKEIQRM---GKKFYFVRTKVDS 153 (376)
T ss_dssp -SEEEEEES----SS--HHHHHHHHHHHHT---T-EEEEEE--HHH
T ss_pred cCEEEEEeC----CCCchhhHHHHHHHHHc---CCcEEEEEecccc
Confidence 788888775 34656655555443332 5799999999994
No 245
>PRK12739 elongation factor G; Reviewed
Probab=99.48 E-value=6.5e-13 Score=100.59 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=74.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC----CC--------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA----EE--------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~----~~--------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 64 (135)
.+|+++|..++|||||+++|+...-. .. ....+..+.....+.. ....++++||||+.
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~----~~~~i~liDTPG~~ 84 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----KGHRINIIDTPGHV 84 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE----CCEEEEEEcCCCHH
Confidence 37999999999999999999742110 00 0111221111112211 45689999999998
Q ss_pred ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 65 KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
.|...+...++.+|++++|+|..+.-.-.. ...+..+.. .+.|++++.||+|..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCC
Confidence 888888889999999999999987643222 222233322 257999999999953
No 246
>CHL00071 tufA elongation factor Tu
Probab=99.48 E-value=1.1e-12 Score=93.96 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=74.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
.++|+++|..++|||||+++|++..-. ...+...|.+........ ......+.+.|+||+..|.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~--~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY--ETENRHYAHVDCPGHADYV 89 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE--ccCCeEEEEEECCChHHHH
Confidence 478999999999999999999964110 001111233322211111 1244578899999988876
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
......+..+|++++|+|....-. ....+.+..+.. .++| ++++.||+|.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQ 140 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCC
Confidence 666667789999999999876432 223333333322 2467 7789999995
No 247
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.47 E-value=2.3e-12 Score=86.66 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=67.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc--c--------c
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE--S--------V 69 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--~--------~ 69 (135)
.++|+++|.+|||||||+|++++...... ..++ ......+... .....++++||||-.... . .
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~-T~~~~~~~~~----~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSE-TLRVREVSGT----VDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-eEEEEEEEEE----ECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 57999999999999999999999754321 1111 1111111111 244678999999965431 1 0
Q ss_pred hHHhhc--cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCC-CCceEEEEEecCCC
Q psy10117 70 WPAFQR--DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDL-NNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~p~ivv~nK~D~ 122 (135)
...++. ..+++++|..++... +... ...++.+...-+. --.++++|.||+|.
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 122333 568888887665432 2222 2333333322221 12479999999994
No 248
>PLN03127 Elongation factor Tu; Provisional
Probab=99.45 E-value=2.7e-12 Score=92.79 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=71.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC------CCC------C--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL------TTA------E--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~------~~~------~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
.++|+++|..++|||||+++|.+. ... + ..+...|.+.......+ +.....+.+.|+||++.|.
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY--ETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE--cCCCeEEEEEECCCccchH
Confidence 368999999999999999999732 100 0 01111222222211211 1245578999999998876
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
.....-...+|++++|+|..+... ....+.+..+.. .++| ++++.||+|.
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~----~gip~iIvviNKiDl 189 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVVFLNKVDV 189 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEeecc
Confidence 655556678999999999876432 222333333322 2577 5788999995
No 249
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.45 E-value=9.4e-13 Score=94.29 Aligned_cols=114 Identities=16% Similarity=0.086 Sum_probs=70.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-C------------------------------ccCCcceeEEEEEeeeecCCc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-E------------------------------YHPTQGVRIVECEHSYALDTS 51 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-~------------------------------~~~t~~~~~~~~~~~~~~~~~ 51 (135)
+||+++|+.++|||||+.+|+...-.- . .+...|.+...-.. .....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~--~~~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYR--YFSTD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeE--EEccC
Confidence 589999999999999999997432110 0 00011111111111 11224
Q ss_pred eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..++.++|+||++.|.......+..+|++++|+|......-...+.| ..+ ...+ ..+++++.||+|.
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~-~~~~--~~~iivviNK~D~ 145 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIA-SLLG--IRHVVLAVNKMDL 145 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHH-HHcC--CCcEEEEEEeccc
Confidence 56889999999998866666678899999999998765322111222 112 1111 3468999999995
No 250
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.44 E-value=1.8e-12 Score=94.32 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=70.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CC------------ccC------------------CcceeEEEEEeeeecCC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EE------------YHP------------------TQGVRIVECEHSYALDT 50 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~------------~~~------------------t~~~~~~~~~~~~~~~~ 50 (135)
.++|+++|..++|||||+.+|+...-. .. ... ..|.+...-.. ....
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~--~~~~ 104 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR--YFST 104 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE--Eecc
Confidence 379999999999999999999854211 00 000 01111111111 1122
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
....+.++|+||++.|.......+..+|++++|+|+...-.-.....+ ..+ ...+ ..|++++.||+|.
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~-~~lg--~~~iIvvvNKiD~ 172 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIA-TLLG--IKHLVVAVNKMDL 172 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHH-HHhC--CCceEEEEEeecc
Confidence 456889999999988865555567899999999998764321111111 111 1111 2478999999995
No 251
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.43 E-value=1.9e-12 Score=89.73 Aligned_cols=84 Identities=26% Similarity=0.299 Sum_probs=58.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC------CCccCCcceeEEEEEeee--------------ecCCceEEEEEEecCCC-
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA------EEYHPTQGVRIVECEHSY--------------ALDTSKTEIELWDTSGD- 63 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~------~~~~~t~~~~~~~~~~~~--------------~~~~~~~~~~i~d~~g~- 63 (135)
|.++|.++||||||++++++.... .+..|++|..+....... ......+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987643 234555555433211010 01124478999999997
Q ss_pred ---cccccchHHh---hccCcEEEEEEeCCC
Q psy10117 64 ---HKFESVWPAF---QRDVHGIIFVFNSGV 88 (135)
Q Consensus 64 ---~~~~~~~~~~---~~~~~~~i~v~d~~~ 88 (135)
++++.+...| +++||++++|+|+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4555555554 789999999999973
No 252
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=7.1e-13 Score=88.56 Aligned_cols=114 Identities=16% Similarity=0.252 Sum_probs=72.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-------cccchHHhh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-------FESVWPAFQ 74 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~ 74 (135)
.++++++|.+|+|||||+|+++.+...+-.....+.+...+... .. ..-.+.+||+||-+. ++.....++
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~-~~--~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL-SY--DGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-hc--cccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 46899999999999999999997554322211222211111111 11 224789999999553 555566677
Q ss_pred ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
...|.++.+.+..|+.---....| .++..... +.+++++.|.+|
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~-~dVi~~~~--~~~~i~~VtQ~D 159 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFL-RDVIILGL--DKRVLFVVTQAD 159 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHH-HHHHHhcc--CceeEEEEehhh
Confidence 889999999999887532222333 33322222 489999999999
No 253
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.43 E-value=1.1e-11 Score=85.03 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=66.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCC-ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-------hHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEE-YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-------WPAF 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~ 73 (135)
.++|+++|.+|+||||++|++++...... ...+.+........ . .....++++||||....... ...+
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~--~--~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSR--T--RAGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE--E--ECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 46899999999999999999998754211 11111221111111 1 14568999999996543211 1112
Q ss_pred h--ccCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCC-CCceEEEEEecCCC
Q psy10117 74 Q--RDVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDL-NNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~p~ivv~nK~D~ 122 (135)
+ ...|+++||..++... +... ...++.+...-+. --.+.+|+.|++|.
T Consensus 114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~ 165 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF 165 (313)
T ss_pred hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence 2 1589999997665332 2222 2333333322110 12478999999994
No 254
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.43 E-value=2.3e-12 Score=93.16 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=74.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-C----------------------------CccCCcceeEEEEEeeeecCCce
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-E----------------------------EYHPTQGVRIVECEHSYALDTSK 52 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 52 (135)
.++|+++|+.++|||||+.+|+...-. . ..+...|.+...-.. ..+...
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~--~~~~~~ 84 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALW--KFETTK 84 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEE--EecCCC
Confidence 368999999999999999888742110 0 001111222111111 223356
Q ss_pred EEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHH-------HHHHHHHHHHhccCCCCc-eEEEEEecCCC
Q psy10117 53 TEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHIS-------ELLLFYDYFVTQSDLNNH-KCLLIDNVKPG 122 (135)
Q Consensus 53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~ 122 (135)
..+++.|+||++.|.......+..+|++++|+|+.+. .|+ ...+.+..+.. .++ +++++.||+|.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDA 157 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccC
Confidence 7899999999999988888899999999999999873 232 33333222211 245 57889999995
No 255
>PRK00049 elongation factor Tu; Reviewed
Probab=99.42 E-value=4.4e-12 Score=90.60 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=73.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
.++|+++|..++|||||+++|++.... ...+...|.+........ ......+.+.|+||+..|.
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~--~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEY--ETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEE--cCCCeEEEEEECCCHHHHH
Confidence 478999999999999999999873110 001112233322222222 1244578899999998876
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEE-EEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL-LIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~ 122 (135)
......+..+|++++|+|..+... .....++..+... +.|.+ ++.||+|.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~----g~p~iiVvvNK~D~ 140 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFLNKCDM 140 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc----CCCEEEEEEeecCC
Confidence 666666789999999999976432 2223333333222 56865 68999995
No 256
>KOG3886|consensus
Probab=99.41 E-value=5e-13 Score=87.23 Aligned_cols=116 Identities=20% Similarity=0.244 Sum_probs=81.1
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc-----ccchHH
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF-----ESVWPA 72 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~ 72 (135)
++-||+++|.+|+||||+=..+...... ....+|+++......+- ....+++||++|++.+ ......
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-----Gnl~LnlwDcGgqe~fmen~~~~q~d~ 77 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-----GNLVLNLWDCGGQEEFMENYLSSQEDN 77 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-----hhheeehhccCCcHHHHHHHHhhcchh
Confidence 3568999999999999987766644322 23445555544333321 4478999999999844 335566
Q ss_pred hhccCcEEEEEEeCCCcchHH---HHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHIS---ELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
.+++.++++++||+...+--. .-+.-++.+.++.+ ...+.+..+|.|..
T Consensus 78 iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP--~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 78 IFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP--EAKIFCLLHKMDLV 129 (295)
T ss_pred hheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC--cceEEEEEeechhc
Confidence 788999999999998876433 33445566655544 78999999999943
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.41 E-value=3e-12 Score=96.23 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=70.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCC-------------ccCC------------------cceeEEEEEeeeecCC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEE-------------YHPT------------------QGVRIVECEHSYALDT 50 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~-------------~~~t------------------~~~~~~~~~~~~~~~~ 50 (135)
.++|+++|++++|||||+++|+...-.-. ...| .|.+...-.. ....
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~--~~~~ 101 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR--YFAT 101 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee--EEcc
Confidence 36899999999999999999996431100 0000 0111100000 1112
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
....+.++|+||++.|..........+|++++|+|......-. ..+.+..+... ...+++++.||+|.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~---~~~~iivvvNK~D~ 169 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL---GIRHVVLAVNKMDL 169 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh---CCCeEEEEEEeccc
Confidence 4457889999999887655556678999999999997653211 11122222111 13578999999995
No 258
>PRK00007 elongation factor G; Reviewed
Probab=99.41 E-value=4.6e-12 Score=96.08 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=73.3
Q ss_pred EEEEECCCCCChHHHHHHHhcC--CC--CCCc------------cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDL--TT--AEEY------------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~--~~--~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|+++|..++|||||+++|+.. .. .... +...|.+......... .....+++.||||+..|.
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~--~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF--WKDHRINIIDTPGHVDFT 89 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE--ECCeEEEEEeCCCcHHHH
Confidence 8999999999999999999741 11 0000 0112222211111111 145689999999998887
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
......++.+|++++|+|....-.......| ..+.. .+.|.+++.||+|..
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~----~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK----YKVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCCC
Confidence 6677788899999999998765433322222 22322 257889999999953
No 259
>PRK12740 elongation factor G; Reviewed
Probab=99.40 E-value=2.8e-12 Score=97.02 Aligned_cols=105 Identities=21% Similarity=0.142 Sum_probs=72.1
Q ss_pred ECCCCCChHHHHHHHhcCCCC----CC----------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 8 LGPIMAGKTVLANALCDLTTA----EE----------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 8 iG~~~~GKssli~~l~~~~~~----~~----------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|+.++|||||+++|+...-. .. ...|++.....+.. ....+++||+||+..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~------~~~~i~liDtPG~~~~~ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW------KGHKINLIDTPGHVDFT 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE------CCEEEEEEECCCcHHHH
Confidence 699999999999999542110 00 11112211122222 56789999999998887
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
..+..+++.+|++++|+|.+..........| ..+.. .+.|+++|.||+|..
T Consensus 75 ~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 75 GEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCC
Confidence 7788899999999999999887665444333 23322 268999999999943
No 260
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.40 E-value=3.1e-12 Score=98.64 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=76.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC-----------CCc---cCCcceeEE--EEEeeee------------cCCceEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA-----------EEY---HPTQGVRIV--ECEHSYA------------LDTSKTEI 55 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~-----------~~~---~~t~~~~~~--~~~~~~~------------~~~~~~~~ 55 (135)
+|+++|+.++|||||+.+|+...-. .++ +...|.++. ....... .+.....+
T Consensus 21 ni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
T PLN00116 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLI 100 (843)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEE
Confidence 8999999999999999999854311 000 011122111 1111111 12246789
Q ss_pred EEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 56 ELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 56 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
++.||||+..|.......++.+|++++|+|+...-.......| ..+.. .+.|++++.||+|..
T Consensus 101 nliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred EEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH----CCCCEEEEEECCccc
Confidence 9999999999988888889999999999998865433222223 23322 368999999999953
No 261
>COG2262 HflX GTPases [General function prediction only]
Probab=99.39 E-value=8.6e-12 Score=87.41 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=75.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeeeecCCceEEEEEEecCC--CcccccchHHh-----
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG--DHKFESVWPAF----- 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g--~~~~~~~~~~~----- 73 (135)
..|.++|..++|||||+|++.+.... +..-.|...+....... ....+-+-||.| ++....+...|
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~-----~g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG-----DGRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC-----CCceEEEecCccCcccCChHHHHHHHHHHH
Confidence 36899999999999999999976544 22233333332222221 245778889988 22223333333
Q ss_pred -hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 -QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+|.++.|+|.+++...+++..-.+-+ ..-+..++|+++|.||+|.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDL 316 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccc
Confidence 24799999999999997666655444433 3334457999999999993
No 262
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.39 E-value=6.6e-12 Score=90.81 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=73.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCC--C-------------------------C--CccCCcceeEEEEEeeeecCCce
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTT--A-------------------------E--EYHPTQGVRIVECEHSYALDTSK 52 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~--~-------------------------~--~~~~t~~~~~~~~~~~~~~~~~~ 52 (135)
.++|+++|+.++|||||+.+|+...- . + ..+...|.+...-.. ..+...
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~--~~~~~~ 84 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALW--KFETPK 84 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeE--EEccCC
Confidence 47899999999999999998875210 0 0 001111222111111 223356
Q ss_pred EEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 53 TEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HI---SELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
..+++.|+||++.|..........+|++++|+|..... .| ....+.+..+.. ..+| ++++.||+|.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDD 157 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccc
Confidence 78999999999999877777788999999999998642 11 122222222221 1455 7799999994
No 263
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.39 E-value=2.4e-12 Score=79.06 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=65.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----ccccchHHhhccCcE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----KFESVWPAFQRDVHG 79 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~~~~~ 79 (135)
||+++|+.|||||||+++|.+... .+..|..+.+. =++.||||.= .+....-....+||.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~--------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY--------------DNTIDTPGEYIENPRFYHALIVTAQDADV 66 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec--------------ccEEECChhheeCHHHHHHHHHHHhhCCE
Confidence 799999999999999999999654 34455444322 2568999931 222223334458999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 80 IIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
++++.|.+++.+. ...-+... -+.|++=|.||+|..
T Consensus 67 V~ll~dat~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 67 VLLLQDATEPRSV--FPPGFASM------FNKPVIGVITKIDLP 102 (143)
T ss_pred EEEEecCCCCCcc--CCchhhcc------cCCCEEEEEECccCc
Confidence 9999999987542 11111111 157999999999964
No 264
>KOG3905|consensus
Probab=99.39 E-value=7.8e-12 Score=85.54 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=76.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccC----cE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDV----HG 79 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~----~~ 79 (135)
+|+++|+.|+|||||+.+|.+.+ ++.+..|..|..............++++|-..|.-.+..+....+... ..
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 68999999999999999999865 466777777766666655556778899999999888777766666533 46
Q ss_pred EEEEEeCCCcch-HHHHHHHHHHHH
Q psy10117 80 IIFVFNSGVPGH-ISELLLFYDYFV 103 (135)
Q Consensus 80 ~i~v~d~~~~~s-~~~~~~~~~~i~ 103 (135)
+|++.|++++-. ++.++.|..-+.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ 155 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLR 155 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHH
Confidence 789999999954 677788875544
No 265
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.38 E-value=1.4e-11 Score=84.24 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=69.0
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCCc--------cCCcceeEEEEEeeeecCCceEEEEEEecCCCccc------
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEEY--------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF------ 66 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------ 66 (135)
++++|+|+|++|+|||||++.|++....... .................++..+.++++||||-...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4789999999999999999999986543221 11123334444444456678899999999992210
Q ss_pred -cc-------chHHhh-------------ccCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 67 -ES-------VWPAFQ-------------RDVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 67 -~~-------~~~~~~-------------~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.. ....++ .+.|+++|.++.+... +..+ ...++++. ...++|-|..|.|.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccc
Confidence 00 001111 1568999999976532 2222 34555552 25788999999993
No 266
>KOG1423|consensus
Probab=99.38 E-value=5.7e-12 Score=85.42 Aligned_cols=112 Identities=11% Similarity=0.123 Sum_probs=70.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------------cch
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------------SVW 70 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------------~~~ 70 (135)
.+|+++|.|++|||||.|.+++.+........... .....--.......+-++||||.-.-. +..
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TT---r~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTT---RHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccce---eeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 57999999999999999999998765322111111 111111112256789999999932111 112
Q ss_pred HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
.....+||.+++++|+++....-+ ...+..+..+ ..+|-++|.||.|
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid 196 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKID 196 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchh
Confidence 234568999999999996432111 2233333333 3689999999999
No 267
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.38 E-value=1.1e-11 Score=86.93 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=71.8
Q ss_pred ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc----------chHHHHHHHHH
Q psy10117 31 YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP----------GHISELLLFYD 100 (135)
Q Consensus 31 ~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~ 100 (135)
..||.|+....+.. ....+.+||.+|+...+..|..+|.++++++||+|+++- ..+.+....++
T Consensus 168 r~~T~Gi~~~~f~~------~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~ 241 (342)
T smart00275 168 RVPTTGIQETAFIV------KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFE 241 (342)
T ss_pred eCCccceEEEEEEE------CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHH
Confidence 45777877666665 567899999999999999999999999999999999973 35677777788
Q ss_pred HHHhccCCCCceEEEEEecCC
Q psy10117 101 YFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 101 ~i~~~~~~~~~p~ivv~nK~D 121 (135)
.+.+.....+.|++|++||.|
T Consensus 242 ~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 242 SICNSRWFANTSIILFLNKID 262 (342)
T ss_pred HHHcCccccCCcEEEEEecHH
Confidence 888777777899999999999
No 268
>PTZ00416 elongation factor 2; Provisional
Probab=99.36 E-value=8.7e-12 Score=96.10 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=75.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC---C--------C---ccCCcceeEE--EEEeeee------cCCceEEEEEEecC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA---E--------E---YHPTQGVRIV--ECEHSYA------LDTSKTEIELWDTS 61 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~---~--------~---~~~t~~~~~~--~~~~~~~------~~~~~~~~~i~d~~ 61 (135)
+|+++|+.++|||||+.+|+...-. . + .+...|.++. ....... .+.....+++.|||
T Consensus 21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtP 100 (836)
T PTZ00416 21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSP 100 (836)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCC
Confidence 8999999999999999999863211 0 0 0011111111 1111111 11235789999999
Q ss_pred CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|+..|.......++.+|++++|+|..+.-.... ...+..+.. .+.|++++.||+|..
T Consensus 101 G~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 101 GHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred CHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999988888888999999999999887543222 222333322 257999999999953
No 269
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=9.6e-12 Score=89.56 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=86.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEE
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF 84 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (135)
|.++|+-..|||||+..+-.........-.+......++.+.+.. ....+.+.||||++.|..++..=.+-+|.+++|+
T Consensus 8 VtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV 86 (509)
T COG0532 8 VTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-KIPGITFIDTPGHEAFTAMRARGASVTDIAILVV 86 (509)
T ss_pred EEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence 789999999999999999998777666666666666777655321 3458999999999999999999889999999999
Q ss_pred eCCCc---chHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 85 NSGVP---GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 85 d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+++|. ++.+.+. +....+.|++++.||+|..
T Consensus 87 a~dDGv~pQTiEAI~--------hak~a~vP~iVAiNKiDk~ 120 (509)
T COG0532 87 AADDGVMPQTIEAIN--------HAKAAGVPIVVAINKIDKP 120 (509)
T ss_pred EccCCcchhHHHHHH--------HHHHCCCCEEEEEecccCC
Confidence 99874 2333322 2223489999999999954
No 270
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.35 E-value=7.6e-12 Score=95.38 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=73.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC--C---------CccC---CcceeEE--EEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA--E---------EYHP---TQGVRIV--ECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~--~---------~~~~---t~~~~~~--~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|+++|+.++|||||+.+|+...-. . ++.+ ..|.++. ........++....+++.||||+..|.
T Consensus 22 ni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~ 101 (731)
T PRK07560 22 NIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG 101 (731)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH
Confidence 6999999999999999999853211 0 0000 0111111 111111112356789999999999998
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
......++.+|++++|+|....-.-.....|. .+.+. +.|.+++.||+|.
T Consensus 102 ~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~----~~~~iv~iNK~D~ 151 (731)
T PRK07560 102 GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE----RVKPVLFINKVDR 151 (731)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc----CCCeEEEEECchh
Confidence 88888899999999999987653322223332 22222 4577999999994
No 271
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.34 E-value=3.2e-11 Score=85.96 Aligned_cols=85 Identities=27% Similarity=0.319 Sum_probs=57.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-Cc-----cCCcceeEEEEEee---------e-----ecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-EY-----HPTQGVRIVECEHS---------Y-----ALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~-----~~t~~~~~~~~~~~---------~-----~~~~~~~~~~i~d~~g 62 (135)
++|.++|.++||||||+++|++..... .+ .|+.|......... . ........+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876542 22 34444322111000 0 0012347799999999
Q ss_pred C----cccccchHHh---hccCcEEEEEEeCC
Q psy10117 63 D----HKFESVWPAF---QRDVHGIIFVFNSG 87 (135)
Q Consensus 63 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 87 (135)
. +..+.+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3444455556 78999999999997
No 272
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.5e-11 Score=90.84 Aligned_cols=109 Identities=24% Similarity=0.211 Sum_probs=72.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc------ccchHHhhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF------ESVWPAFQR 75 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~------~~~~~~~~~ 75 (135)
+.+++++|.|+||||||+|++++....-...|.+.++-.+-.... ....+++.|.||--.. +.....|+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~----~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY----KGHEIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe----cCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 467999999999999999999997665444455555433333322 3345899999994322 223334443
Q ss_pred --cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 76 --DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 76 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+.|+++-|.|.++-+. -.+.--++... +.|++++.|++|
T Consensus 79 ~~~~D~ivnVvDAtnLeR---nLyltlQLlE~----g~p~ilaLNm~D 119 (653)
T COG0370 79 EGKPDLIVNVVDATNLER---NLYLTLQLLEL----GIPMILALNMID 119 (653)
T ss_pred cCCCCEEEEEcccchHHH---HHHHHHHHHHc----CCCeEEEeccHh
Confidence 6799999999988542 22222233221 689999999999
No 273
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.32 E-value=5.7e-11 Score=75.34 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=45.3
Q ss_pred EEEEEEecCCCc----ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117 53 TEIELWDTSGDH----KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVK 120 (135)
Q Consensus 53 ~~~~i~d~~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 120 (135)
..+.|.|+||.. ........++..+|++++|.+....-+-.....+.+..... ...+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~----~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD----KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT----CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC----CCeEEEEEcCC
Confidence 457899999953 33466788889999999999998866555556665555333 33488888884
No 274
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.32 E-value=4.7e-11 Score=86.49 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=71.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhc----cCcE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR----DVHG 79 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~----~~~~ 79 (135)
.|+|+|..++|||||+.+|.+.+ ++.++.+..|......-........+++|-..|...+..+....+. .-..
T Consensus 27 ~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~ 103 (472)
T PF05783_consen 27 SVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL 103 (472)
T ss_pred eEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence 68999999999999999987643 4557777777665554443345678999999987777776666555 2368
Q ss_pred EEEEEeCCCcchH-HHHHHHHHHH
Q psy10117 80 IIFVFNSGVPGHI-SELLLFYDYF 102 (135)
Q Consensus 80 ~i~v~d~~~~~s~-~~~~~~~~~i 102 (135)
+|+|.|++.|-.+ +.+..|+..+
T Consensus 104 vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 104 VVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred EEEEecCCChHHHHHHHHHHHHHH
Confidence 8999999999764 5667665433
No 275
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.29 E-value=8.3e-11 Score=77.52 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=61.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc----c---hH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES----V---WP 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----~---~~ 71 (135)
++|+++|.+|+||||++|.+++....... ..|.......... ....+.|+||||--.... . ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~------~g~~v~VIDTPGl~d~~~~~~~~~~~i~ 74 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV------DGRQVTVIDTPGLFDSDGSDEEIIREIK 74 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE------TTEEEEEEE--SSEETTEEHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee------cceEEEEEeCCCCCCCcccHHHHHHHHH
Confidence 58999999999999999999987664332 1222222222211 557899999999321111 1 11
Q ss_pred H----hhccCcEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 72 A----FQRDVHGIIFVFNSGVPGH-ISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 72 ~----~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
. ...+.+++++|+....-.. -..+..++..+....- -.-++||.+..|
T Consensus 75 ~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d 127 (212)
T PF04548_consen 75 RCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHAD 127 (212)
T ss_dssp HHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGG
T ss_pred HHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhcc
Confidence 1 1246899999999883221 1222334444433221 235777888887
No 276
>KOG1145|consensus
Probab=99.29 E-value=2.1e-11 Score=88.15 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=85.2
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEE
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF 84 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (135)
|.++|.-.-|||||+..|-.........-.+..-+-.+..... ..-++++.||||+..|..|+.+-..-+|.+++|+
T Consensus 156 VTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p---~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVV 232 (683)
T KOG1145|consen 156 VTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP---SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVV 232 (683)
T ss_pred EEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC---CCCEEEEecCCcHHHHHHHHhccCccccEEEEEE
Confidence 6799999999999999999877665544555554445555543 3368999999999999999999888999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCccc
Q psy10117 85 NSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDS 126 (135)
Q Consensus 85 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 126 (135)
...|.-- .+-++.| ++....+.|++++.||||....+
T Consensus 233 AadDGVm----pQT~EaI-khAk~A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 233 AADDGVM----PQTLEAI-KHAKSANVPIVVAINKIDKPGAN 269 (683)
T ss_pred EccCCcc----HhHHHHH-HHHHhcCCCEEEEEeccCCCCCC
Confidence 9987421 2222222 23333589999999999965443
No 277
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.28 E-value=6.3e-11 Score=84.17 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=70.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-----------hH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-----------WP 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 71 (135)
+||+++|.|++|||||+|++++.+-.- ..+..|.+.......... ...++.+.||.|-.+-... ..
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR~I-v~~~aGTTRD~I~~~~e~--~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFER--DGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred eEEEEEeCCCCCchHHHHHhccCceEE-ecCCCCccccceeeeEEE--CCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 799999999999999999999975431 112222222222222221 4568899999994322111 12
Q ss_pred HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.....++.+++|.|.+.+-+-... .....+. ....++++|.||.|.
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~----~~g~~~vIvvNKWDl 301 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDL-RIAGLIE----EAGRGIVIVVNKWDL 301 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHH-HHHHHHH----HcCCCeEEEEEcccc
Confidence 245689999999999876542221 1111221 136899999999994
No 278
>KOG0082|consensus
Probab=99.28 E-value=1.1e-10 Score=81.22 Aligned_cols=84 Identities=21% Similarity=0.321 Sum_probs=67.1
Q ss_pred cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc----------hHHHHHHHHHH
Q psy10117 32 HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG----------HISELLLFYDY 101 (135)
Q Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~ 101 (135)
.+|.|+....+.. ...++.+.|.+||..-+..|.++|.++++++||.++++-+ .+.+.....+.
T Consensus 180 ~~T~GI~e~~F~~------k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~s 253 (354)
T KOG0082|consen 180 VPTTGIVEVEFTI------KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFES 253 (354)
T ss_pred cCcCCeeEEEEEe------CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHH
Confidence 4455655555555 5588999999999888889999999999999999998532 13444567778
Q ss_pred HHhccCCCCceEEEEEecCC
Q psy10117 102 FVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 102 i~~~~~~~~~p~ivv~nK~D 121 (135)
+.+++-..+.+++++.||.|
T Consensus 254 I~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 254 ICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred HhcCcccccCcEEEEeecHH
Confidence 88888778999999999999
No 279
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.28 E-value=3e-11 Score=83.01 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=76.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc----ccccchHHh
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH----KFESVWPAF 73 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~ 73 (135)
.|-++|-|++|||||++.++..++. ++..|..|+-.. ...-++.+=|.||.- .-..+-..|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---------~~~~sfv~ADIPGLIEGAs~G~GLG~~F 231 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---------DGGESFVVADIPGLIEGASEGVGLGLRF 231 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---------cCCCcEEEecCcccccccccCCCccHHH
Confidence 3558999999999999999986654 334455554221 133468899999832 222233333
Q ss_pred ---hccCcEEEEEEeCCCcch---HHHHHHHHHHHHhc-cCCCCceEEEEEecCCC
Q psy10117 74 ---QRDVHGIIFVFNSGVPGH---ISELLLFYDYFVTQ-SDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ---~~~~~~~i~v~d~~~~~s---~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~D~ 122 (135)
+++|..+++|+|++..+. .+..+....++..+ ..+.+.|.+||+||+|.
T Consensus 232 LrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~ 287 (369)
T COG0536 232 LRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL 287 (369)
T ss_pred HHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence 457999999999986553 56666666677665 34568999999999994
No 280
>KOG1191|consensus
Probab=99.27 E-value=9.2e-11 Score=83.87 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=73.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-ccc--------chHHh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FES--------VWPAF 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~--------~~~~~ 73 (135)
++|+++|+|+||||||+|.|...... -..|-.|.+.......+. -+.+++.+.||.|-.+ -.. ....-
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drs-IVSpv~GTTRDaiea~v~--~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRS-IVSPVPGTTRDAIEAQVT--VNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCce-EeCCCCCcchhhheeEee--cCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 68999999999999999999986543 122222332223333333 2778999999999433 111 12224
Q ss_pred hccCcEEEEEEeC--CCcchHHHHHHHHHHHHhc-----cCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNS--GVPGHISELLLFYDYFVTQ-----SDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~--~~~~s~~~~~~~~~~i~~~-----~~~~~~p~ivv~nK~D~ 122 (135)
...+|.+++|+|. ++-++-..+...++..... +.....|++++.||.|.
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~ 401 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL 401 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhc
Confidence 5689999999999 4433333334444443221 12235799999999993
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.26 E-value=3.9e-11 Score=93.51 Aligned_cols=102 Identities=14% Similarity=0.057 Sum_probs=70.8
Q ss_pred CChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecC--------------CceEEEEEEecCCCcccccchHHhhccCc
Q psy10117 13 AGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALD--------------TSKTEIELWDTSGDHKFESVWPAFQRDVH 78 (135)
Q Consensus 13 ~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 78 (135)
++||||+..+.+........-.+.+.+-.+..+.... ...-.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4599999999987776554455444443444333110 01123899999999999888888888999
Q ss_pred EEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 79 GIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|+|+++ +++++.+. .+.. .+.|+++|+||+|.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL 590 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDL 590 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCC
Confidence 9999999986 44444443 2221 15799999999995
No 282
>KOG0468|consensus
Probab=99.23 E-value=1.2e-10 Score=86.09 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=84.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC---------------ccCCcceeEEEEEeee---ecCCceEEEEEEecCCCc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE---------------YHPTQGVRIVECEHSY---ALDTSKTEIELWDTSGDH 64 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~---------------~~~t~~~~~~~~~~~~---~~~~~~~~~~i~d~~g~~ 64 (135)
.++.++|+-+.|||+|+..|..+..+.. ++...|+.+....... +.++..+-+++.||||+-
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 5789999999999999999998776532 1222344333333222 455677889999999999
Q ss_pred ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 65 KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
.|.......++-+|++++++|+.+.-++.. ...++. .-..+.|+.+|.||.|
T Consensus 209 nF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikh----aiq~~~~i~vviNKiD 260 (971)
T KOG0468|consen 209 NFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKH----AIQNRLPIVVVINKVD 260 (971)
T ss_pred cchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHH----HHhccCcEEEEEehhH
Confidence 999999999999999999999987655422 233333 2334789999999999
No 283
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.21 E-value=2.7e-10 Score=75.77 Aligned_cols=105 Identities=11% Similarity=0.167 Sum_probs=63.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
..|+++|++|+|||||++.+.+...........|. +... .....++.+.|+||.- .. .....+.+|.+++
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~---~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll 109 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVV---TGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL 109 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEEE---ecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence 35899999999999999999875322212222221 1110 1145678999999853 22 2334578999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
++|.+....... ...+..+.. .+.| +++|.||.|.
T Consensus 110 viDa~~~~~~~~-~~i~~~l~~----~g~p~vi~VvnK~D~ 145 (225)
T cd01882 110 LIDASFGFEMET-FEFLNILQV----HGFPRVMGVLTHLDL 145 (225)
T ss_pred EEecCcCCCHHH-HHHHHHHHH----cCCCeEEEEEecccc
Confidence 999876443211 222222221 1456 4559999995
No 284
>KOG0462|consensus
Probab=99.16 E-value=4.5e-10 Score=81.40 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=88.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC-------------CCccCCcceeEEEEEeee-ecCCceEEEEEEecCCCcccccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA-------------EEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSGDHKFESV 69 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~-------------~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~~~~~ 69 (135)
|+.|+..-.-|||||..+|+...-. .+.+...|++....+... +.++..+.+++.||||+-.|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 5778888999999999999853221 123455677666665555 34478899999999999999999
Q ss_pred hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcccc
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDSS 127 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 127 (135)
..+-+.-|+++++++|.+..-.-..+..+...+. .+..++.|.||+|....+.
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adp 194 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADP 194 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCH
Confidence 9999999999999999987654444444433332 2688999999999554443
No 285
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=3.7e-10 Score=79.41 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=74.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC--CCC---------------------------CccCCcceeEEEEEeeeecCCce
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT--TAE---------------------------EYHPTQGVRIVECEHSYALDTSK 52 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~~ 52 (135)
.++++++|+..+|||||+-+|+.+. ... ..+...|.++..-.. ..+...
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~--~fet~k 84 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHS--KFETDK 84 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEE--EeecCC
Confidence 3689999999999999998888432 110 011112322211111 222356
Q ss_pred EEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 53 TEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HI---SELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+.++|.|+||+..|-...-.-.+.||++|+|+|+.+.+ .| -..++.+-.. +.. .-..++|+.||+|.-
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La-~tl--Gi~~lIVavNKMD~v 158 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLA-RTL--GIKQLIVAVNKMDLV 158 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHH-Hhc--CCceEEEEEEccccc
Confidence 78999999998888766666678999999999999874 12 1112222211 111 245899999999963
No 286
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.15 E-value=1.9e-09 Score=72.06 Aligned_cols=66 Identities=15% Similarity=0.054 Sum_probs=41.3
Q ss_pred EEEEEEecCCCcc-------------cccchHHhhc-cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEe
Q psy10117 53 TEIELWDTSGDHK-------------FESVWPAFQR-DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118 (135)
Q Consensus 53 ~~~~i~d~~g~~~-------------~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 118 (135)
..+.+.|+||-.. .+.+...|++ ..+.+++|.|+...-+-.......+.+.. ...|+++|.|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~----~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP----QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH----cCCcEEEEEE
Confidence 6788999999632 1224555677 45688999987653222222233333321 3689999999
Q ss_pred cCCC
Q psy10117 119 VKPG 122 (135)
Q Consensus 119 K~D~ 122 (135)
|+|.
T Consensus 201 K~D~ 204 (240)
T smart00053 201 KLDL 204 (240)
T ss_pred CCCC
Confidence 9994
No 287
>KOG3887|consensus
Probab=99.14 E-value=2.4e-10 Score=75.49 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=75.3
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCCc---cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc---cchHHhh
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEEY---HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE---SVWPAFQ 74 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---~~~~~~~ 74 (135)
|+.+|+++|...+||||+-+-..+...|.+. ++|.-.... ...+.-+.+++||.|||-.+- -..+..|
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d------~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF 99 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRD------HISNSFINFQVWDFPGQMDFFDPSFDYEMIF 99 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHh------hhhhhhcceEEeecCCccccCCCccCHHHHH
Confidence 4678999999999999998877776654321 111111000 112256789999999986442 2346678
Q ss_pred ccCcEEEEEEeCCCcchHHHHHHHHHHHHh-ccCCCCceEEEEEecCCC
Q psy10117 75 RDVHGIIFVFNSGVPGHISELLLFYDYFVT-QSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~D~ 122 (135)
+.+-+++||+|..+. -.+.+..+...+.+ ++-.+++.+-|+..|.|+
T Consensus 100 ~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDG 147 (347)
T KOG3887|consen 100 RGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDG 147 (347)
T ss_pred hccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccC
Confidence 999999999998652 23333333333322 333458999999999995
No 288
>KOG1707|consensus
Probab=99.13 E-value=1.4e-09 Score=79.27 Aligned_cols=113 Identities=15% Similarity=0.214 Sum_probs=77.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+++.++|+.++|||.+++.++++........+....+..-..... +..-.+.+-|.+..+ .......- ..||.+++
T Consensus 426 f~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~--g~~k~LiL~ei~~~~-~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 426 FQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK--GQQKYLILREIGEDD-QDFLTSKE-AACDVACL 501 (625)
T ss_pred eeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec--cccceEEEeecCccc-cccccCcc-ceeeeEEE
Confidence 578999999999999999999987766554555544333333222 344556666655431 11111111 67999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+||.+++.+|..+...++.-.. ....|+++|+.|+|.
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dl 538 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADL 538 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhh---ccCCceEEEeecccc
Confidence 9999999999887665554322 247999999999994
No 289
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=9.6e-10 Score=82.98 Aligned_cols=112 Identities=21% Similarity=0.186 Sum_probs=79.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCC--CC--CC------------ccCCcceeEEEEEeeeecCCc-eEEEEEEecCCCccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLT--TA--EE------------YHPTQGVRIVECEHSYALDTS-KTEIELWDTSGDHKF 66 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~--~~--~~------------~~~t~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~ 66 (135)
+|.++|+-.+|||||..+++-.. .. .+ .+...|+++..-.....- . ...+++.||||+-.|
T Consensus 12 NigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~--~~~~~iNlIDTPGHVDF 89 (697)
T COG0480 12 NIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW--KGDYRINLIDTPGHVDF 89 (697)
T ss_pred EEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE--cCceEEEEeCCCCcccc
Confidence 78999999999999999888321 11 11 122234444333333321 3 589999999999999
Q ss_pred ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.......++-+|++++|+|....-....-.-|.+. ...++|.+++.||+|-
T Consensus 90 t~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-----~~~~vp~i~fiNKmDR 140 (697)
T COG0480 90 TIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-----DKYGVPRILFVNKMDR 140 (697)
T ss_pred HHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-----hhcCCCeEEEEECccc
Confidence 99999999999999999999875443333444333 2347999999999993
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.11 E-value=8.6e-10 Score=78.76 Aligned_cols=112 Identities=18% Similarity=0.259 Sum_probs=83.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV 69 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 69 (135)
+|+++..-.-|||||+..|+.++-. .+.+...|+++..+...+. .+.++++|.||||+..|-..
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~--~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN--YNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee--cCCeEEEEecCCCcCCccch
Confidence 7899999999999999999975422 1244555666655554432 35689999999999999999
Q ss_pred hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+..++-+|++++++|..+.. .-+.+..++..... +.+-|||.||+|.
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDr 132 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDR 132 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCC
Confidence 999999999999999998743 22334444444332 5677889999993
No 291
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=9.4e-10 Score=77.98 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=76.0
Q ss_pred EEEEECCCCCChHHHHHHHhc-CCCCC-------------------CccCCcceeEE--EEEeeeecCCceEEEEEEecC
Q psy10117 4 KILILGPIMAGKTVLANALCD-LTTAE-------------------EYHPTQGVRIV--ECEHSYALDTSKTEIELWDTS 61 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~-~~~~~-------------------~~~~t~~~~~~--~~~~~~~~~~~~~~~~i~d~~ 61 (135)
..+|+-.|.+|||||-..|+- +.... ..+...|++.. ..++.+ ....+++.|||
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y----~~~~iNLLDTP 89 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY----ADCLVNLLDTP 89 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc----CCeEEeccCCC
Confidence 357899999999999987661 11110 01222344333 333332 56789999999
Q ss_pred CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCccc
Q psy10117 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDS 126 (135)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 126 (135)
|++.|.......+..+|++++|+|....-.-. ...++ + -+.+.++|++-+.||.|-++-+
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLf-e---VcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLF-E---VCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHH-HHHHH-H---HHhhcCCceEEEeeccccccCC
Confidence 99999988888899999999999986542111 11222 2 2334579999999999944333
No 292
>PRK13768 GTPase; Provisional
Probab=99.09 E-value=3.9e-10 Score=76.19 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=42.9
Q ss_pred EEEEEecCCCccc---ccchHHhhcc-----CcEEEEEEeCCCcchHHHH--HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 54 EIELWDTSGDHKF---ESVWPAFQRD-----VHGIIFVFNSGVPGHISEL--LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 54 ~~~i~d~~g~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+.+||+||+... +..+..+++. ++++++++|.+........ ..|+....... .+.|+++|.||+|.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhh
Confidence 6789999997653 3444444332 8899999999765443222 23333222111 26899999999994
No 293
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.09 E-value=2e-09 Score=80.20 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=68.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCc--cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-------cc---
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEY--HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-------SV--- 69 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~--- 69 (135)
.++|+++|.+|+||||++|.+++....... .+... ....+... . ....+.|+||||-.... .+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~--i--dG~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGL--V--QGVKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEE--E--CCceEEEEECCCCCccccchHHHHHHHHH
Confidence 578999999999999999999997543221 11111 11111111 1 34679999999955321 11
Q ss_pred hHHhhc--cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCC-CceEEEEEecCCC
Q psy10117 70 WPAFQR--DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLN-NHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ivv~nK~D~ 122 (135)
...++. ..|++++|..++......+-..+++.+...-+.. -.-+|||.++.|.
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~ 248 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS 248 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence 112333 4799999998764433222234555554333311 2367888888883
No 294
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.07 E-value=1.9e-09 Score=73.84 Aligned_cols=93 Identities=20% Similarity=0.167 Sum_probs=60.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeee-ecCCceEEEEEEecCCCc----ccc---cchHHh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSGDH----KFE---SVWPAF 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~----~~~---~~~~~~ 73 (135)
.+++++|+|+||||||++.|++.... .+|..|. .+.-+ ..+-....+++.|+||-- .-+ ...-..
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTT------l~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTT------LEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCcee------cccccceEeecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 47899999999999999999986543 2232221 11111 112267899999999732 111 223445
Q ss_pred hccCcEEEEEEeCCCcch-HHHHHHHHHH
Q psy10117 74 QRDVHGIIFVFNSGVPGH-ISELLLFYDY 101 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s-~~~~~~~~~~ 101 (135)
.++||.+++|.|+..... .+.+..-+..
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~ 166 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELED 166 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHh
Confidence 789999999999987655 4444444433
No 295
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.05 E-value=3.7e-10 Score=75.57 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=35.8
Q ss_pred EEEEEecCCCcccccchHHhh--------ccCcEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 54 EIELWDTSGDHKFESVWPAFQ--------RDVHGIIFVFNSGVPGHI-SELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 54 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..-++|||||.++-..+.... ...-++++++|.....+- ..+..++..+.-... .+.|.+.|.||+|.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~-~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR-LELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH-HTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh-CCCCEEEeeeccCc
Confidence 788999999987765555544 456688999997644331 222222222211111 27899999999994
No 296
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.04 E-value=3e-09 Score=77.27 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=71.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC---CC--ccCCcceeEEEEEe-------------eeec--------------C
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA---EE--YHPTQGVRIVECEH-------------SYAL--------------D 49 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~---~~--~~~t~~~~~~~~~~-------------~~~~--------------~ 49 (135)
.++|.++|.-..|||||+..|++.... .+ -.-|+..-|..... .... .
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 478999999999999999999975331 11 11111111111100 0000 0
Q ss_pred CceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 50 TSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 50 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.....+.+.|+||++.|-.....-...+|++++|+|+.+...-....+.+..+ ...+ -.++++|.||+|.
T Consensus 114 ~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lg--i~~iIVvlNKiDl 183 (460)
T PTZ00327 114 TLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMK--LKHIIILQNKIDL 183 (460)
T ss_pred cccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcC--CCcEEEEEecccc
Confidence 01246899999999988766666678999999999998642111222223222 1112 2478999999995
No 297
>PTZ00258 GTP-binding protein; Provisional
Probab=99.04 E-value=6.3e-09 Score=73.96 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=52.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC-c-cCCcceeEEEEEeee-----------ecCCceEEEEEEecCCCccc---
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE-Y-HPTQGVRIVECEHSY-----------ALDTSKTEIELWDTSGDHKF--- 66 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~-----------~~~~~~~~~~i~d~~g~~~~--- 66 (135)
++|.++|.|+||||||+++|.+...... + ..|+..+.......- ........+.+.|+||...-
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~ 101 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASE 101 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcc
Confidence 6899999999999999999987654322 1 122232222222210 00011345899999995421
Q ss_pred -ccchHH---hhccCcEEEEEEeCC
Q psy10117 67 -ESVWPA---FQRDVHGIIFVFNSG 87 (135)
Q Consensus 67 -~~~~~~---~~~~~~~~i~v~d~~ 87 (135)
+.+... .++++|++++|+|+.
T Consensus 102 g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 102 GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 122223 356899999999984
No 298
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=4.3e-09 Score=75.46 Aligned_cols=119 Identities=21% Similarity=0.204 Sum_probs=87.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCC-------------CccCCcceeEEEEEeee---ecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAE-------------EYHPTQGVRIVECEHSY---ALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~-------------~~~~t~~~~~~~~~~~~---~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+..++..-.-|||||..|++...-.- +.+...|++........ ..+++.+.+++.||||+-.|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 46778888999999999998643221 13344555554444444 345689999999999999999
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcccc
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGDSS 127 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 127 (135)
....+.+..|.++++++|.+..-.-..+...+..+. .+.-++-|.||+|....+.
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp 145 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP 145 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH
Confidence 888999999999999999987644444444444442 2788999999999655443
No 299
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.01 E-value=1.1e-08 Score=71.23 Aligned_cols=116 Identities=15% Similarity=0.205 Sum_probs=71.4
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCC-----ccC---CcceeEEEEEeeeecCCceEEEEEEecCCCc-------c
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEE-----YHP---TQGVRIVECEHSYALDTSKTEIELWDTSGDH-------K 65 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~-----~~~---t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-------~ 65 (135)
+.+.|+++|++|+||||++|.|++...... ..+ ..+.........+..++..+.+++.||||-- .
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999998733321 111 1223333334444666788999999999921 1
Q ss_pred cc-------cchHHhhc--------------cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 66 FE-------SVWPAFQR--------------DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 66 ~~-------~~~~~~~~--------------~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++ .....|+. ++|+++|....+. ..+..+ -..++.+.. .+.+|-|..|+|.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~-----~vNlIPVI~KaD~ 174 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK-----RVNLIPVIAKADT 174 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc-----ccCeeeeeecccc
Confidence 11 11111221 4678888887554 334444 345555533 4567777889993
No 300
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.00 E-value=6.1e-09 Score=73.31 Aligned_cols=87 Identities=25% Similarity=0.175 Sum_probs=53.7
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeee---------ecC--CceEEEEEEecCCCccc-
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSY---------ALD--TSKTEIELWDTSGDHKF- 66 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~---------~~~--~~~~~~~i~d~~g~~~~- 66 (135)
|.++|.++|.|+||||||++++++...... ...|+........... ..+ .....+.+.|+||...-
T Consensus 1 m~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 1 MGLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 568999999999999999999998764321 1222232221222211 000 11235899999995421
Q ss_pred ---ccchHHh---hccCcEEEEEEeCC
Q psy10117 67 ---ESVWPAF---QRDVHGIIFVFNSG 87 (135)
Q Consensus 67 ---~~~~~~~---~~~~~~~i~v~d~~ 87 (135)
+.+...+ ++++|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222233 56899999999985
No 301
>PRK09866 hypothetical protein; Provisional
Probab=99.00 E-value=1.2e-08 Score=76.02 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=43.4
Q ss_pred EEEEEEecCCCccc-----ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 53 TEIELWDTSGDHKF-----ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 53 ~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+.+.||||-... .......+.++|+++||+|.....+... ...++.+.+... ..|+++|.||+|.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K--~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ--SVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC--CCCEEEEEEcccC
Confidence 35678899996542 2233446889999999999987543322 222333322211 3699999999995
No 302
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.97 E-value=2e-09 Score=66.61 Aligned_cols=54 Identities=26% Similarity=0.190 Sum_probs=35.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 63 (135)
+++++|.+|+|||||+|++.+..... .....|.+......... + .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~--~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLT--P---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeC--C---CEEEEECCCc
Confidence 68999999999999999999876542 22222322222222211 1 5799999994
No 303
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.95 E-value=4e-08 Score=69.99 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=70.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCC--------------ccCCcc-------eeE---EEEEeeeecCCceEEEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEE--------------YHPTQG-------VRI---VECEHSYALDTSKTEIEL 57 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~--------------~~~t~~-------~~~---~~~~~~~~~~~~~~~~~i 57 (135)
++-|.++|+.++|||||+++|.++...+. .++..| ..+ ....+. ..++...++.+
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~-~~~~~~~~Vrl 95 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEIN-INEGTKFKVRL 95 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEe-ccCCCcccEEE
Confidence 35689999999999999999999822211 122223 111 112222 23345678999
Q ss_pred EecCCCc--------cccc---------------------chHHhhc-cCcEEEEEE-eCC----CcchHHHH-HHHHHH
Q psy10117 58 WDTSGDH--------KFES---------------------VWPAFQR-DVHGIIFVF-NSG----VPGHISEL-LLFYDY 101 (135)
Q Consensus 58 ~d~~g~~--------~~~~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~s~~~~-~~~~~~ 101 (135)
.||+|-. +-.. -....++ +++..++|. |.+ .++.+... ..|+++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999821 1111 0122344 788888888 653 11233333 677777
Q ss_pred HHhccCCCCceEEEEEecCC
Q psy10117 102 FVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 102 i~~~~~~~~~p~ivv~nK~D 121 (135)
+... +.|++++.||+|
T Consensus 176 Lk~~----~kPfiivlN~~d 191 (492)
T TIGR02836 176 LKEL----NKPFIILLNSTH 191 (492)
T ss_pred HHhc----CCCEEEEEECcC
Confidence 7543 689999999999
No 304
>KOG2655|consensus
Probab=98.95 E-value=1.9e-08 Score=70.32 Aligned_cols=115 Identities=13% Similarity=0.193 Sum_probs=70.0
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCC-------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc-------cc
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEE-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-------KF 66 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-------~~ 66 (135)
+.+.++++|++|.|||||+|.|+....... ..+.....+......+..++..+.+++.||||-- .|
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 468999999999999999999987644321 1111122333333334556788899999999921 12
Q ss_pred cc-------chHHhh-----------c--cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 67 ES-------VWPAFQ-----------R--DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 67 ~~-------~~~~~~-----------~--~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+. ....|+ . ++|+++|.+..+.. .+..+ ...++.+.. .+.++-|..|.|
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~-----~vNiIPVI~KaD 169 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK-----KVNLIPVIAKAD 169 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc-----cccccceeeccc
Confidence 11 122222 1 56888888876543 23334 344555532 466777778998
No 305
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.93 E-value=6.9e-09 Score=70.71 Aligned_cols=83 Identities=25% Similarity=0.150 Sum_probs=49.9
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeee---------ecCC--ceEEEEEEecCCCccc----c
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSY---------ALDT--SKTEIELWDTSGDHKF----E 67 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~---------~~~~--~~~~~~i~d~~g~~~~----~ 67 (135)
|.++|.|+||||||++++++...... ...|+........... ..+. ....+.+.|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57899999999999999999765322 1222232222222211 0000 1235899999994321 1
Q ss_pred cchHHh---hccCcEEEEEEeCC
Q psy10117 68 SVWPAF---QRDVHGIIFVFNSG 87 (135)
Q Consensus 68 ~~~~~~---~~~~~~~i~v~d~~ 87 (135)
.+...| ++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 222233 46899999999974
No 306
>KOG1547|consensus
Probab=98.87 E-value=7.5e-08 Score=63.84 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=68.1
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCC-------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc---ccccch
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEE-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH---KFESVW 70 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---~~~~~~ 70 (135)
|+|+|+++|.+|.|||||++.+........ ..-.....+...+.....++...++++.||||-- .....|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 589999999999999999999886433211 1111122233333333556678889999999921 112222
Q ss_pred HH-----------hhc--------------cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 71 PA-----------FQR--------------DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 71 ~~-----------~~~--------------~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+. |++ ++++++|.+..+.. ++.-+ -++++.+.+ -+.++-|..|.|
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaD 195 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKAD 195 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeecc
Confidence 21 221 35677777766543 34334 345555532 356677778998
No 307
>KOG0705|consensus
Probab=98.86 E-value=2.5e-09 Score=77.72 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=87.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++|+-|+|..++|||+|+.+++.+.+.++..|.-| .+.-+.-.++...-+.+.|.+|.. -..|...+|++|
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~----~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavI 100 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG----RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVV 100 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCc----cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceE
Confidence 57899999999999999999999999877766655 222233334567778888887722 245667999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
|||.+.+..+|+.+..+.-.+..+.....+|+++++++.-
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~ 140 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH 140 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch
Confidence 9999999999999988877777666666889999988753
No 308
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.81 E-value=2e-08 Score=63.06 Aligned_cols=54 Identities=28% Similarity=0.265 Sum_probs=37.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
.+++++|.+++||||+++++.+.. ...+.++.|.+....... ....+.+|||||
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~-----~~~~~~~~DtpG 155 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVK-----ITSKIYLLDTPG 155 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEE-----cCCCEEEEECcC
Confidence 578999999999999999999754 334455666533211111 112689999998
No 309
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.80 E-value=2.2e-08 Score=63.92 Aligned_cols=55 Identities=27% Similarity=0.233 Sum_probs=36.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 63 (135)
++++++|.+++|||||++++.+.... ...+..+.+......... ..+.++||||-
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~-----~~~~~iDtpG~ 170 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS-----PGIYLLDTPGI 170 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec-----CCEEEEECCCC
Confidence 68999999999999999999987653 222322332222222211 35789999983
No 310
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.78 E-value=2.3e-08 Score=63.91 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=36.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
++++++|.+++|||||+|++.+..... ..+..|.+........ ...+.++|+||
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~-----~~~~~l~DtPG 171 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHL-----DKKVKLLDSPG 171 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEe-----CCCEEEEECcC
Confidence 689999999999999999999865421 2233333322222221 12578999998
No 311
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=3e-08 Score=62.35 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=34.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
++|+++|.+|+|||||+|++.+..... ..+..|.+.....+.. .-.+.+.||||
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~-----~~~~~liDtPG 156 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITL-----MKRIYLIDCPG 156 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEc-----CCCEEEEECcC
Confidence 578899999999999999999865421 2233333222211111 11367999998
No 312
>KOG0458|consensus
Probab=98.74 E-value=6.9e-08 Score=70.65 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=76.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-----------------------------CccCCcceeEEEEEeeeecCCceE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-----------------------------EYHPTQGVRIVECEHSYALDTSKT 53 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 53 (135)
+.++++|.-.+|||||+-+++...-.. ..+...|+++......+. ....
T Consensus 178 l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe--s~~~ 255 (603)
T KOG0458|consen 178 LNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE--SKSK 255 (603)
T ss_pred eEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe--cCce
Confidence 578999999999999998887432110 123334444433333332 4667
Q ss_pred EEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hHH---HHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 54 EIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HIS---ELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 54 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+.|.|+||+..|-+..-.-...+|++++|+|++..+ .|+ ..++.. .+.+. +.-..++|+.||+|.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~--Lgi~qlivaiNKmD~ 327 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRS--LGISQLIVAINKMDL 327 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHH--cCcceEEEEeecccc
Confidence 8999999998888776666667899999999998643 233 112222 22222 225689999999995
No 313
>KOG1954|consensus
Probab=98.72 E-value=2.9e-07 Score=64.60 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=74.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC---ccCCcceeEEEEEeee---------------------------------
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE---YHPTQGVRIVECEHSY--------------------------------- 46 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~--------------------------------- 46 (135)
.=|+++|+-..||||+|+.|+.+.++.. .+||... +.......
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~-Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDR-FIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcce-eEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 3489999999999999999999988732 2232211 00000000
Q ss_pred ---ecCCceEEEEEEecCCCc-----------ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce
Q psy10117 47 ---ALDTSKTEIELWDTSGDH-----------KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK 112 (135)
Q Consensus 47 ---~~~~~~~~~~i~d~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 112 (135)
..+..--+++|.|+||-- .|....+=|..++|.|+++||...-+--++....+..+..+ .-.
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Edk 213 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDK 213 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cce
Confidence 011112568999999932 12233444667999999999987766666667777777554 346
Q ss_pred EEEEEecCCC
Q psy10117 113 CLLIDNVKPG 122 (135)
Q Consensus 113 ~ivv~nK~D~ 122 (135)
+-||.||.|.
T Consensus 214 iRVVLNKADq 223 (532)
T KOG1954|consen 214 IRVVLNKADQ 223 (532)
T ss_pred eEEEeccccc
Confidence 7778899984
No 314
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.71 E-value=4.3e-08 Score=66.04 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=48.1
Q ss_pred cccccchHHhhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 64 HKFESVWPAFQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++..+...+++++|++++|||++++. +|+.+..|+..+.. .++|+++|+||+|.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL 79 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDL 79 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECccc
Confidence 677778888999999999999999888 89999999987643 36899999999995
No 315
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.71 E-value=6.3e-08 Score=66.34 Aligned_cols=55 Identities=29% Similarity=0.310 Sum_probs=36.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 63 (135)
++++++|.++||||||+|++.+...... .+..|.+......... -.+.++||||.
T Consensus 119 ~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~-----~~~~l~DtPG~ 173 (276)
T TIGR03596 119 IRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLS-----DGLELLDTPGI 173 (276)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeC-----CCEEEEECCCc
Confidence 6899999999999999999997653211 2222322222222111 25789999996
No 316
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.70 E-value=9.3e-08 Score=65.86 Aligned_cols=56 Identities=29% Similarity=0.303 Sum_probs=37.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 64 (135)
++++++|.++||||||+|++.+..... ..+..|.+........ ...+.++||||-.
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~-----~~~~~l~DtPGi~ 177 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKL-----GKGLELLDTPGIL 177 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEe-----CCcEEEEECCCcC
Confidence 689999999999999999999865422 1233333322222221 1257899999953
No 317
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.69 E-value=4.7e-08 Score=63.34 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=34.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-------CccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
.+++++|.+|+|||||+|.+.+..... ...+..|.+......... . .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~--~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---N--GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---C--CCEEEeCcC
Confidence 478999999999999999999854311 112222332222222211 1 578999998
No 318
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.64 E-value=1e-07 Score=76.35 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=66.9
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCCc----cCC--cceeEEEEEeeeecCCceEEEEEEecCCCc--------ccccch
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTAEEY----HPT--QGVRIVECEHSYALDTSKTEIELWDTSGDH--------KFESVW 70 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~ 70 (135)
.+|+|++|+||||++... +..++-.. ..+ ++.+. .+... ..-.--++|++|.- .....|
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~---~c~ww---f~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR---NCDWW---FTDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc---ccceE---ecCCEEEEcCCCccccCCCcccccHHHH
Confidence 479999999999999987 44443211 111 11110 01000 11134588999822 223345
Q ss_pred HHhhc---------cCcEEEEEEeCCCcch---------HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 71 PAFQR---------DVHGIIFVFNSGVPGH---------ISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 71 ~~~~~---------~~~~~i~v~d~~~~~s---------~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
..++. ..+|+|+++|+.+--. -..++..+.++...-+. ..||.|+.+|||
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~-~~PVYvv~Tk~D 254 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA-RFPVYLVLTKAD 254 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecch
Confidence 55542 5899999999864321 13556677777666553 899999999999
No 319
>KOG1144|consensus
Probab=98.63 E-value=1.9e-07 Score=70.39 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=75.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCc----cCCcceeEEEEEeee-------ecCC---ceEEEEEEecCCCcccccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEY----HPTQGVRIVECEHSY-------ALDT---SKTEIELWDTSGDHKFESV 69 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~-------~~~~---~~~~~~i~d~~g~~~~~~~ 69 (135)
=++|+|.-.+|||-|+..+.+....... ...+|-+|+....-. .... ..--+.+.||||++.|..+
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl 556 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL 556 (1064)
T ss_pred eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence 3789999999999999999875443222 222344444433111 0111 1123678999999999999
Q ss_pred hHHhhccCcEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+......|+.+|+|+|+.. +++.+.+.-+ +. .+.|++|+.||+|
T Consensus 557 RsrgsslC~~aIlvvdImhGlepqtiESi~lL-----R~---rktpFivALNKiD 603 (1064)
T KOG1144|consen 557 RSRGSSLCDLAILVVDIMHGLEPQTIESINLL-----RM---RKTPFIVALNKID 603 (1064)
T ss_pred hhccccccceEEEEeehhccCCcchhHHHHHH-----Hh---cCCCeEEeehhhh
Confidence 9999999999999999864 3444433322 11 2789999999999
No 320
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.61 E-value=4.4e-07 Score=64.12 Aligned_cols=88 Identities=23% Similarity=0.051 Sum_probs=55.0
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCC-CC-CccCC-cceeEEEEEeee-----------ecCCceEEEEEEecCCCccc
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTT-AE-EYHPT-QGVRIVECEHSY-----------ALDTSKTEIELWDTSGDHKF 66 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~-~~-~~~~t-~~~~~~~~~~~~-----------~~~~~~~~~~i~d~~g~~~~ 66 (135)
|.+++.++|.|++|||||++.+++... .. .|..+ +..+......+- ........+.+.|.||.-.-
T Consensus 1 m~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 1 MGLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred CCceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 568999999999999999999998765 32 22222 222221222111 11113346789999995321
Q ss_pred ----cc---chHHhhccCcEEEEEEeCCC
Q psy10117 67 ----ES---VWPAFQRDVHGIIFVFNSGV 88 (135)
Q Consensus 67 ----~~---~~~~~~~~~~~~i~v~d~~~ 88 (135)
.. ..-..++++|+++.|+++.+
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 22 22334679999999999853
No 321
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.8e-07 Score=64.58 Aligned_cols=87 Identities=30% Similarity=0.287 Sum_probs=57.8
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCC------CCccCCcceeEEEEEeee-------e--cCCceEEEEEEecCCC--
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTA------EEYHPTQGVRIVECEHSY-------A--LDTSKTEIELWDTSGD-- 63 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~------~~~~~t~~~~~~~~~~~~-------~--~~~~~~~~~i~d~~g~-- 63 (135)
|.+++-++|.|+||||||++.++..... .+..|..|..+..- .+. . .......+++.|.+|.
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 5689999999999999999999986532 22344455433222 111 1 1123466889998873
Q ss_pred --cccccchHHh---hccCcEEEEEEeCCC
Q psy10117 64 --HKFESVWPAF---QRDVHGIIFVFNSGV 88 (135)
Q Consensus 64 --~~~~~~~~~~---~~~~~~~i~v~d~~~ 88 (135)
..-+.+-..| ++++|+++.|+|+..
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3344444555 468999999999873
No 322
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.57 E-value=7.3e-07 Score=63.94 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=64.4
Q ss_pred cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc----------chHHHHHHHHHH
Q psy10117 32 HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP----------GHISELLLFYDY 101 (135)
Q Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~ 101 (135)
.+|.|+....+... ....+.++|++|+..-+..|..+|.++++++||+++++- ..+.+....++.
T Consensus 220 ~~T~Gi~e~~f~~~-----~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~ 294 (389)
T PF00503_consen 220 VKTTGITEIDFNFS-----GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFES 294 (389)
T ss_dssp ---SSEEEEEEEE------TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHH
T ss_pred CCCCCeeEEEEEee-----cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHH
Confidence 46667665555542 567899999999998889999999999999999998642 225555667777
Q ss_pred HHhccCCCCceEEEEEecCC
Q psy10117 102 FVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 102 i~~~~~~~~~p~ivv~nK~D 121 (135)
+.+.....+.|++|+.||.|
T Consensus 295 i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 295 ICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp HHTSGGGTTSEEEEEEE-HH
T ss_pred HHhCcccccCceEEeeecHH
Confidence 77777777999999999999
No 323
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.57 E-value=2e-07 Score=65.10 Aligned_cols=56 Identities=27% Similarity=0.182 Sum_probs=38.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 63 (135)
..++.++|-|+|||||+||+|.+.... ..++..|.+-....+.... .+.++||||-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~-----~i~LlDtPGi 187 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDD-----GIYLLDTPGI 187 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCC-----CeEEecCCCc
Confidence 368999999999999999999997653 2223334433333333222 4899999993
No 324
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.53 E-value=1.5e-06 Score=57.87 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=50.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC--CCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc------chHH
Q psy10117 4 KILILGPIMAGKTVLANALCDL--TTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES------VWPA 72 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~--~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~ 72 (135)
-|.|+|++++|||+|+|.+.+. .+. .....|.|+-....... .+....+-+.||+|...... ..-.
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~---~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK---LGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc---CCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3779999999999999999998 443 12334455433222221 12356899999999543321 1112
Q ss_pred hhcc--CcEEEEEEeCCCcc
Q psy10117 73 FQRD--VHGIIFVFNSGVPG 90 (135)
Q Consensus 73 ~~~~--~~~~i~v~d~~~~~ 90 (135)
.+.. ++.+|+..+.....
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 2233 67777766655433
No 325
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=3.9e-07 Score=57.20 Aligned_cols=53 Identities=26% Similarity=0.304 Sum_probs=33.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
.+++++|.+++||||++|.+.+.... ....+..... ..... ....+.+.||||
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~-----~~~~~~liDtPG 154 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVK-----LDNKIKLLDTPG 154 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEE-----ecCCEEEEECCC
Confidence 47899999999999999999986532 1111111111 11111 113588999998
No 326
>KOG1490|consensus
Probab=98.50 E-value=2.6e-07 Score=66.90 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=62.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCC-ccCCc-ceeEEEEEeeeecCCceEEEEEEecCCCccc----ccchHH-----
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEE-YHPTQ-GVRIVECEHSYALDTSKTEIELWDTSGDHKF----ESVWPA----- 72 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~-~~~t~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~~----- 72 (135)
.++++|-|+||||||++.++....... |..|. +.-... .+-.-...++.||||--.. +...+.
T Consensus 170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH------~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH------LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred eEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh------hhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 478999999999999998887654322 22221 110001 1114457789999993211 111111
Q ss_pred hhccCcEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 73 FQRDVHGIIFVFNSGVPG--HISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
..+--.+++|+.|++..= |.+.=...+..|. +...+.|+++|.||+|
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D 292 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKID 292 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeeccc
Confidence 112235788889987532 3322233333432 1234889999999999
No 327
>KOG1486|consensus
Probab=98.50 E-value=2.8e-06 Score=56.97 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=59.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeee-ecCCceEEEEEEecCCCcc------cc-cchHHhh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSGDHK------FE-SVWPAFQ 74 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g~~~------~~-~~~~~~~ 74 (135)
.+++++|-|.+|||||+..+..... ...+..|++.+.-+ -..-+...+++.|.||--. -+ ...-...
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~S-----eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHS-----EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchh-----hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe
Confidence 4899999999999999999887433 22233333333333 1112556899999998321 11 1122234
Q ss_pred ccCcEEEEEEeCCCcchHHHH-HHHHHHH
Q psy10117 75 RDVHGIIFVFNSGVPGHISEL-LLFYDYF 102 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~-~~~~~~i 102 (135)
+-||.+++|.|.+..+--.++ +.-++.+
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 679999999999876654433 3444443
No 328
>KOG0410|consensus
Probab=98.45 E-value=6.3e-07 Score=61.87 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=66.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCC--CccCCcceeEEEEEeeeecCCceEEEEEEecCC--CcccccchHHh------h
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTAE--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSG--DHKFESVWPAF------Q 74 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g--~~~~~~~~~~~------~ 74 (135)
|.++|..++|||||++.|......+ ..-.|.+.+......+ ..-.+-+.||-| ++....+...| .
T Consensus 181 iavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-----sg~~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 181 IAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-----SGNFVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred EEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-----CCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 7899999999999999999543322 2223333332222222 444677889988 22222222222 3
Q ss_pred ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce----EEEEEecCC
Q psy10117 75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK----CLLIDNVKP 121 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p----~ivv~nK~D 121 (135)
..+|.++-|.|+++|..-.+....+.-+ +.-+.++.| ++=|-||.|
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD 305 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKID 305 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccc
Confidence 4799999999999997654444444333 223333344 455677777
No 329
>KOG2486|consensus
Probab=98.45 E-value=6.9e-07 Score=60.40 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=63.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccC-CcceeEEEEEeeeecCCceEEEEEEecCC----------CcccccchH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHP-TQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFESVWP 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~ 71 (135)
.+++++|.+++|||||++.+........... ..|.+ ..+.. -...-+..+.|.|| .+.+..+.+
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~in~--f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 137 PELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAINH--FHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred ceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eeeee--eeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 5789999999999999999997655432222 33321 11111 01233778899999 224444556
Q ss_pred HhhccCcE---EEEEEeCCCc-chHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 72 AFQRDVHG---IIFVFNSGVP-GHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 72 ~~~~~~~~---~i~v~d~~~~-~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
.|+.+-+- +.+..|.+.+ ...+.. ..|+.+ .++|..+|.||||
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-------~~VP~t~vfTK~D 259 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-------NNVPMTSVFTKCD 259 (320)
T ss_pred HHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-------cCCCeEEeeehhh
Confidence 66654333 3344444322 112222 345444 3799999999999
No 330
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.9e-06 Score=60.13 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=73.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-----------------------------------CccCCcceeEEEEEeeee
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-----------------------------------EYHPTQGVRIVECEHSYA 47 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-----------------------------------~~~~t~~~~~~~~~~~~~ 47 (135)
+|++-+|.-.-||||||-+|+.....- +..-|+.+.|. +
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYR------y 80 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYR------Y 80 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEee------e
Confidence 688999999999999999998653320 01111222222 2
Q ss_pred cCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHH--HHHHHHHhccCCCCceEEEEEecCCCCcc
Q psy10117 48 LDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELL--LFYDYFVTQSDLNNHKCLLIDNVKPGRGD 125 (135)
Q Consensus 48 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 125 (135)
....+.++-|-||||++.|-..+..=.+-||++|+++|.... -.++.+ .++..++ .=..++++.||+|.-.-
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvdy 154 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVDY 154 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHh-----CCcEEEEEEeeeccccc
Confidence 223677899999999999876666666789999999998432 223332 2333332 23579999999995333
Q ss_pred cc
Q psy10117 126 SS 127 (135)
Q Consensus 126 ~~ 127 (135)
+.
T Consensus 155 ~e 156 (431)
T COG2895 155 SE 156 (431)
T ss_pred CH
Confidence 33
No 331
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.43 E-value=2.4e-07 Score=58.37 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
-++++|++|||||||+|.|....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999999874
No 332
>KOG4273|consensus
Probab=98.41 E-value=1.1e-06 Score=58.77 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=72.0
Q ss_pred EEEEECCCCC--ChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 4 KILILGPIMA--GKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 4 ki~viG~~~~--GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
-+++.|-+|+ ||.+|+.++....+.....+.-...++.+++....-...+.+-|.-.. .+.+-. .........+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lp-n~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLP-NAEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccC-CcccccceeeEE
Confidence 4789999999 999999999988877665555555666665543211122233222211 122211 122234567999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
++||++..+.+..++.|+.-..-.. ---++.+|||.|
T Consensus 84 mvfdlse~s~l~alqdwl~htdins---fdillcignkvd 120 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINS---FDILLCIGNKVD 120 (418)
T ss_pred EEEeccchhhhHHHHhhcccccccc---chhheecccccc
Confidence 9999999999999999986432111 124567799998
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.39 E-value=1.1e-06 Score=61.94 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++++|.+|||||||+|+|.+...
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccc
Confidence 68999999999999999998644
No 334
>KOG0085|consensus
Probab=98.36 E-value=2.4e-07 Score=61.25 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=56.8
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCC----------cchHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGV----------PGHISELLLFYDYFVTQSDLNNHKCLLIDNVK 120 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 120 (135)
..+.+.+.|.+|+..-+..|-++|.+...++|...++. ....++....+..|..++=..+.+++++.||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 56788899999998888889999999988888776643 23355556667777777766789999999999
Q ss_pred C
Q psy10117 121 P 121 (135)
Q Consensus 121 D 121 (135)
|
T Consensus 277 D 277 (359)
T KOG0085|consen 277 D 277 (359)
T ss_pred h
Confidence 9
No 335
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.35 E-value=5.2e-07 Score=54.01 Aligned_cols=96 Identities=23% Similarity=0.228 Sum_probs=60.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch----HHhhccCcE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW----PAFQRDVHG 79 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~~~~~~~~ 79 (135)
|++++|+.|+|||||.+.+.+... -+..|..+.+.. =-..|+||.---...+ -....+++.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d-------------~~~IDTPGEy~~~~~~Y~aL~tt~~dadv 67 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFND-------------KGDIDTPGEYFEHPRWYHALITTLQDADV 67 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccC-------------ccccCCchhhhhhhHHHHHHHHHhhccce
Confidence 799999999999999999988543 234444432211 1256888832111122 223468999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 80 IIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++|-.++++++- ...-+.. ....|+|=|.+|.|.
T Consensus 68 i~~v~~and~~s~--f~p~f~~------~~~k~vIgvVTK~DL 102 (148)
T COG4917 68 IIYVHAANDPESR--FPPGFLD------IGVKKVIGVVTKADL 102 (148)
T ss_pred eeeeecccCcccc--CCccccc------ccccceEEEEecccc
Confidence 9999999998652 0111111 124568888899985
No 336
>KOG1491|consensus
Probab=98.33 E-value=4.2e-06 Score=58.17 Aligned_cols=87 Identities=22% Similarity=0.155 Sum_probs=56.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeee---------e--cCCceEEEEEEecCCCc----
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSY---------A--LDTSKTEIELWDTSGDH---- 64 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~---------~--~~~~~~~~~i~d~~g~~---- 64 (135)
.+++-++|-|+||||||+|.+........ +-.|+..+........ + .......++++|+.|.-
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 46899999999999999999998766533 1223333332222221 1 22345678999988743
Q ss_pred ccccchHHh---hccCcEEEEEEeCCC
Q psy10117 65 KFESVWPAF---QRDVHGIIFVFNSGV 88 (135)
Q Consensus 65 ~~~~~~~~~---~~~~~~~i~v~d~~~ 88 (135)
.-+.+-..| ++.+|+++-|+++..
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecC
Confidence 333444444 468999999998753
No 337
>KOG0461|consensus
Probab=98.31 E-value=5.4e-06 Score=57.97 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=66.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-------CCccC--CcceeEEEEEeee---ecCCceEEEEEEecCCCcccccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-------EEYHP--TQGVRIVECEHSY---ALDTSKTEIELWDTSGDHKFESV 69 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-------~~~~~--t~~~~~~~~~~~~---~~~~~~~~~~i~d~~g~~~~~~~ 69 (135)
++++-++|.-.||||+|.+++..-... ..... |.+.-+..+.... -..++...+.+.|+||+...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL--- 83 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL--- 83 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH---
Confidence 579999999999999999999864322 11111 1111122222222 23456788899999996543
Q ss_pred hHHhhc---cCcEEEEEEeCCCcchHHHHHHH-HHHHHhccCCCCceEEEEEecCC
Q psy10117 70 WPAFQR---DVHGIIFVFNSGVPGHISELLLF-YDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 70 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
....+. -.|..++|+|+.....-...+-. +-++ --...++|.||+|
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid 133 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKID 133 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccc
Confidence 333333 35778999998765433333222 2222 1246778889988
No 338
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.30 E-value=1.9e-06 Score=61.18 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
+++++|.+|||||||+|++.+..
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 79999999999999999999853
No 339
>PRK13796 GTPase YqeH; Provisional
Probab=98.30 E-value=1.7e-06 Score=61.58 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
++.++|.+|||||||+|+|...
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhh
Confidence 6899999999999999999864
No 340
>PRK12289 GTPase RsgA; Reviewed
Probab=98.30 E-value=1.8e-06 Score=61.01 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++|+|++|||||||+|.|.+...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccc
Confidence 68999999999999999997643
No 341
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.29 E-value=7.6e-06 Score=56.81 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=38.1
Q ss_pred eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
.+.+-|.||+|.-... ......+|.++++-. +.+-+++......+ ...|.++|.||+|..
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~---~~~~~el~~~~~~l------~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTI---PGTGDDLQGIKAGL------MEIADIYVVNKADGE 185 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEec---CCccHHHHHHHHHH------hhhccEEEEEccccc
Confidence 5778899998843221 234567788887743 33445555544433 256789999999953
No 342
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.28 E-value=2.5e-06 Score=57.50 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|||||||+|++.+...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhh
Confidence 578999999999999999998643
No 343
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.27 E-value=3.1e-06 Score=58.39 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++|++|+|||||+|.+.+....
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~~~ 187 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDL 187 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchhhc
Confidence 5889999999999999999986543
No 344
>KOG0464|consensus
Probab=98.25 E-value=4.5e-07 Score=64.66 Aligned_cols=112 Identities=23% Similarity=0.240 Sum_probs=80.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC----CC------------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA----EE------------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~----~~------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|-++..-.+||||.-.+++.-.-. +. .....|++..+-. +..++....+++.||||+-.|+
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaa--v~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAA--VNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeee--eecccccceEeeecCCCcceEE
Confidence 5778888999999999888742110 00 1222344332222 2455678899999999999999
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
-..+.+++--|+++.|||.+-.-.-..+..|- +...-++|-..+.||+|.
T Consensus 117 leverclrvldgavav~dasagve~qtltvwr-----qadk~~ip~~~finkmdk 166 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWR-----QADKFKIPAHCFINKMDK 166 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeeh-----hccccCCchhhhhhhhhh
Confidence 99999999999999999998654444556663 333458999999999993
No 345
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.22 E-value=2.5e-06 Score=56.52 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++|+||+|||||||++.+.+-..
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccC
Confidence 68999999999999999988655
No 346
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.1e-05 Score=55.22 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=70.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES 68 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 68 (135)
+||..+|.-.-|||||...+..-... .......|+++..-...+.. ........|+||+..|-.
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet--~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET--ANRHYAHVDCPGHADYVK 90 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec--CCceEEeccCCChHHHHH
Confidence 68999999999999999887742110 01223344444333333322 455778899999887754
Q ss_pred chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..-.-..+.|+.|+|+..++..--....+ +-.. ++.+ -.-++++.||+|.
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEH-iLla-rqvG--vp~ivvflnK~Dm 140 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREH-ILLA-RQVG--VPYIVVFLNKVDM 140 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhh-hhhh-hhcC--CcEEEEEEecccc
Confidence 43333456799999999988643222222 1111 1222 3468889999995
No 347
>KOG3859|consensus
Probab=98.19 E-value=6.4e-06 Score=56.02 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=43.9
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCC----ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEE----YHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
|.++|+-+|+.|.|||||+..|.+..+... ..|++... ..+......+..++++|.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~--~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQ--ANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceee--cchhhhhhcCeeEEEEEEeecc
Confidence 568999999999999999999998776533 23333332 3333334556788999999988
No 348
>PRK00098 GTPase RsgA; Reviewed
Probab=98.17 E-value=5.3e-06 Score=57.53 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||+|.|.+...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 478999999999999999998654
No 349
>KOG0467|consensus
Probab=98.15 E-value=1.5e-05 Score=60.43 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=75.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC--------------CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA--------------EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV 69 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 69 (135)
+++++..-.-|||||...|....-. .+.+.+.|+++..-.+. .-...+.+++.|+||+-.|.+.
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is--~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAIS--LLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccc--cccCceEEEEecCCCccchhhh
Confidence 6889999999999999988743211 11234445544332222 2236678999999999999999
Q ss_pred hHHhhccCcEEEEEEeCCCcc---hHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPG---HISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
.....+-+|++++.+|+...- +..-+ +.|++ ....++|.||+|
T Consensus 89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~---------~~~~~lvinkid 135 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE---------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc---------cCceEEEEehhh
Confidence 999999999999999986542 22222 22432 457788999999
No 350
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.15 E-value=3e-05 Score=54.43 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=36.1
Q ss_pred eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+.|.||+|..... ......+|.++++.+.... +.++.....+. ...-++|.||.|.
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~g---d~iq~~k~gi~------E~aDIiVVNKaDl 206 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAG---DELQGIKKGIM------ELADLIVINKADG 206 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCch---HHHHHHHhhhh------hhhheEEeehhcc
Confidence 4678899999965322 2246679999999663333 33333222221 2234899999994
No 351
>KOG1532|consensus
Probab=98.12 E-value=3.5e-05 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.-|+++|=.||||||++.+|...
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHH
Confidence 45899999999999999998743
No 352
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.08 E-value=4.3e-06 Score=55.82 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.5
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
+.++|++|||||||++.+.+-..+
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 689999999999999999987654
No 353
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.07 E-value=4.4e-05 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.4
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
+++.|+.|+|||||++++....
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc
Confidence 5799999999999999988753
No 354
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.05 E-value=5.4e-06 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++||+|||||||++.+-+.+.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 4789999999999999999987665
No 355
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.04 E-value=2.8e-05 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++++|++|+||||++..+...
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999988753
No 356
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.04 E-value=4.1e-05 Score=55.46 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=60.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC------CCC----CCc-----------cCCcceeEEEEEeeee-----------cCCc
Q psy10117 4 KILILGPIMAGKTVLANALCDL------TTA----EEY-----------HPTQGVRIVECEHSYA-----------LDTS 51 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~------~~~----~~~-----------~~t~~~~~~~~~~~~~-----------~~~~ 51 (135)
-|+++|++||||||++..|... +.. +.+ ....++.++....... ....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~ 181 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE 181 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC
Confidence 4789999999999999988721 100 111 1112222222111000 0012
Q ss_pred eEEEEEEecCCCcccccc----hHHhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 52 KTEIELWDTSGDHKFESV----WPAFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+.+-|.||+|....... ...+. .+.+-+++|.|......- ....+.+... -.+--++.||.|+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~----~~~~g~IlTKlD~ 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS----VDVGSVIITKLDG 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc----cCCcEEEEECccC
Confidence 568899999996533221 11121 246789999998654322 2222333211 2366777999994
No 357
>PRK08118 topology modulation protein; Reviewed
Probab=98.02 E-value=5.2e-06 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.||+|+|++|||||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999865
No 358
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.02 E-value=7e-05 Score=45.62 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
-+++.|++|+|||++++.+.....
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998643
No 359
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.02 E-value=6.6e-06 Score=43.49 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=19.7
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
.+|.|++|+||||++..+..--+
T Consensus 26 tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78999999999999998875433
No 360
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=9.3e-06 Score=55.81 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
.+++|++|||||||+|+|....
T Consensus 167 svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred EEEECCCCCcHHHHHHhhCchh
Confidence 5799999999999999999743
No 361
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.00 E-value=5.3e-06 Score=53.31 Aligned_cols=23 Identities=52% Similarity=0.764 Sum_probs=21.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
+||+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999986
No 362
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.00 E-value=6e-06 Score=49.46 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 363
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.99 E-value=7.4e-06 Score=57.40 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.9
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++||+|||||||++.+.+...+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 689999999999999999997764
No 364
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=6.3e-05 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++++|++|+||||++..|...
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998753
No 365
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.98 E-value=6.6e-05 Score=46.30 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=63.5
Q ss_pred EEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEe
Q psy10117 6 LILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFN 85 (135)
Q Consensus 6 ~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (135)
+.-|..|+|||++-..+...-... |.+.--...........+.+.+.|+|+... ......+..+|.++++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~------~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL------GKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcC
Confidence 456789999999987666532210 111111111111111226788999987432 334567889999999998
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 86 SGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 86 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+ ..++..+...++.+.... ...++.+|.|+.+.
T Consensus 76 ~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 75 344555555555554332 25678899999974
No 366
>KOG0448|consensus
Probab=97.97 E-value=6.8e-05 Score=56.47 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=42.1
Q ss_pred EEEEEecCCCc---ccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcc
Q psy10117 54 EIELWDTSGDH---KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGD 125 (135)
Q Consensus 54 ~~~i~d~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 125 (135)
.+.+.|.||.. ...+-...+..++|.+|||.+.-+..+..+ .+++....+. ...+.++.||-|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~----KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE----KPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc----CCcEEEEechhhhhcc
Confidence 45677888844 444455667789999999998866544322 4444444332 4566777777785443
No 367
>KOG1424|consensus
Probab=97.97 E-value=1.2e-05 Score=58.58 Aligned_cols=56 Identities=20% Similarity=0.119 Sum_probs=38.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 64 (135)
+-|-++|-|+|||||+||.|.+.+.. ....|.|-+-+-.++.+ .-.+.++|+||.-
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~l-----s~~v~LCDCPGLV 370 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFL-----SPSVCLCDCPGLV 370 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEc-----CCCceecCCCCcc
Confidence 56889999999999999999997653 23344444332222221 2267899999943
No 368
>PRK14531 adenylate kinase; Provisional
Probab=97.97 E-value=7.9e-06 Score=52.71 Aligned_cols=25 Identities=48% Similarity=0.709 Sum_probs=22.6
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~ 25 (135)
|+.+|+++|+|||||||+...+...
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999988754
No 369
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.95 E-value=7.9e-05 Score=47.49 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=36.8
Q ss_pred eEEEEEEecCCCccccc----chHHhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 52 KTEIELWDTSGDHKFES----VWPAFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+-+.|++|...... ....+. ...+.+++|+|..... ....+...+.+..+ ..-++.||.|.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~----~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG----ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC----CCEEEEECCcC
Confidence 45678899999643211 111111 2489999999986443 23344444433322 35666799994
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.95 E-value=3.9e-05 Score=52.60 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
-++++|++|+||||.+..+..
T Consensus 74 vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 477899999999999987764
No 371
>PRK07261 topology modulation protein; Provisional
Probab=97.95 E-value=8.3e-06 Score=52.09 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.||+|+|++|||||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 372
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=9.3e-05 Score=53.16 Aligned_cols=109 Identities=18% Similarity=0.046 Sum_probs=70.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC---CC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCc
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA---EE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVH 78 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~---~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 78 (135)
-|...|.-.-|||||+..+.+..-. .. -.-|+...++.+.. ....+.+.|.||++++-...-.-....|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~------~d~~~~fIDvpgh~~~i~~miag~~~~d 75 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL------EDGVMGFIDVPGHPDFISNLLAGLGGID 75 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC------CCCceEEeeCCCcHHHHHHHHhhhcCCc
Confidence 4677899999999999999986433 11 22233333332222 3348899999999988766666667899
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+++|++.++.-.....+ .+..+ .. +.....++|.+|+|.
T Consensus 76 ~alLvV~~deGl~~qtgE-hL~iL-dl--lgi~~giivltk~D~ 115 (447)
T COG3276 76 YALLVVAADEGLMAQTGE-HLLIL-DL--LGIKNGIIVLTKADR 115 (447)
T ss_pred eEEEEEeCccCcchhhHH-HHHHH-Hh--cCCCceEEEEecccc
Confidence 999999996543322222 22222 11 124566999999994
No 373
>KOG0447|consensus
Probab=97.92 E-value=0.0002 Score=53.24 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=45.0
Q ss_pred eEEEEEEecCCC-------------cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEe
Q psy10117 52 KTEIELWDTSGD-------------HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118 (135)
Q Consensus 52 ~~~~~i~d~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 118 (135)
...+.+.|.||- +....+...|.++.++||+|+--. |.+.-+.....+.......+...|+|.+
T Consensus 411 LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLT 487 (980)
T KOG0447|consen 411 LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLT 487 (980)
T ss_pred cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEe
Confidence 345678899982 122346677889999999998532 2333344444554555556788999999
Q ss_pred cCC
Q psy10117 119 VKP 121 (135)
Q Consensus 119 K~D 121 (135)
|.|
T Consensus 488 KVD 490 (980)
T KOG0447|consen 488 KVD 490 (980)
T ss_pred ecc
Confidence 999
No 374
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=3.2e-05 Score=61.80 Aligned_cols=110 Identities=18% Similarity=0.124 Sum_probs=62.9
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC-CCc---cCCcceeEEEEEeeeecCCceEEEEEEecCCC--------cccccchHH
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA-EEY---HPTQGVRIVECEHSYALDTSKTEIELWDTSGD--------HKFESVWPA 72 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~-~~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~~ 72 (135)
.+|+|++|+||||++..--- .++ ... ....+.. +..+. ....-.--+.||.|. +..+..|..
T Consensus 128 y~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~g--T~~cd---wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPG--TRNCD---WWFTDEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhcccc-cCcchhhhccccccCCC--CcccC---cccccceEEEcCCcceecccCcchhhHHHHHH
Confidence 37999999999999875433 332 110 0000100 11111 112334567788772 233445665
Q ss_pred h---------hccCcEEEEEEeCCCcch---------HHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 73 F---------QRDVHGIIFVFNSGVPGH---------ISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 73 ~---------~~~~~~~i~v~d~~~~~s---------~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+ .+..+|||+..|+.+--+ ...++.-++++...-. -..||.|+.||.|
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~D 267 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKAD 267 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEeccc
Confidence 5 236899999999864322 1223455666654433 3789999999999
No 375
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.91 E-value=9.2e-06 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
|+++|++||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999853
No 376
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.91 E-value=1.1e-05 Score=49.41 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 578999999999999999998654
No 377
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.90 E-value=1e-05 Score=55.67 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=57.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcc-eeEEEEEeeeecCCceEEEEEEec---CC-----CcccccchHHhh
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQG-VRIVECEHSYALDTSKTEIELWDT---SG-----DHKFESVWPAFQ 74 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~~i~d~---~g-----~~~~~~~~~~~~ 74 (135)
+++++|+++.|||+++++|...-.+. ..+... ......+.+...+.......|.+. |. ....+......+
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCC-CCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999754322 111110 011111111111111111111110 11 111122333466
Q ss_pred ccCcEEEEEEeCCCc---chHHHHHHHHHHHHhccCCCCceEEEEEec
Q psy10117 75 RDVHGIIFVFNSGVP---GHISELLLFYDYFVTQSDLNNHKCLLIDNV 119 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 119 (135)
+....=++++|--.. -+..+-+..+..+......-.+|++.||++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 778888999985422 123333444444444444447999999986
No 378
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.89 E-value=1.3e-05 Score=51.86 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~ 26 (135)
.-.++|+|++|||||||++.+....
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4468999999999999999997754
No 379
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.87 E-value=1.7e-05 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++++||+|||||||++.+.+-..
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 57999999999999999998544
No 380
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.85 E-value=2.1e-05 Score=50.58 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
+++|+|++|+|||||+|.+.+-..+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCC
Confidence 5789999999999999999986654
No 381
>KOG0099|consensus
Probab=97.84 E-value=7.2e-05 Score=50.63 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=56.7
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc----------hHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG----------HISELLLFYDYFVTQSDLNNHKCLLIDNVK 120 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 120 (135)
..++++.+|.+||..-+..|-..|.+..+++||..+++-. .+.+...+++.+.+.+-+..+.+|++.||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 5678999999999888888999999999999999987422 234444555666666666689999999999
Q ss_pred C
Q psy10117 121 P 121 (135)
Q Consensus 121 D 121 (135)
|
T Consensus 280 D 280 (379)
T KOG0099|consen 280 D 280 (379)
T ss_pred H
Confidence 9
No 382
>PRK14530 adenylate kinase; Provisional
Probab=97.84 E-value=1.6e-05 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.7
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~ 25 (135)
+..+|+|+|++||||||+.+.|...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 383
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.84 E-value=1.9e-05 Score=55.67 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
+.++||+||||||+++.+.+-..+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 569999999999999999987664
No 384
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.83 E-value=2.3e-05 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 478999999999999999998654
No 385
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.82 E-value=1.3e-05 Score=50.65 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=17.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999875
No 386
>PF05729 NACHT: NACHT domain
Probab=97.82 E-value=7.9e-05 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++|.|++|+|||+++..++..-.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHH
Confidence 68999999999999999886543
No 387
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.80 E-value=2e-05 Score=47.64 Aligned_cols=22 Identities=50% Similarity=0.653 Sum_probs=20.0
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999999853
No 388
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.80 E-value=2.3e-05 Score=50.32 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.++++|++|+|||||++.+..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 578999999999999998863
No 389
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.79 E-value=3e-05 Score=50.78 Aligned_cols=24 Identities=42% Similarity=0.433 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998654
No 390
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.79 E-value=3e-05 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 478999999999999999998654
No 391
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.78 E-value=2.6e-05 Score=42.24 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 392
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.77 E-value=2.4e-05 Score=46.03 Aligned_cols=20 Identities=45% Similarity=0.421 Sum_probs=18.3
Q ss_pred EEEEECCCCCChHHHHHHHh
Q psy10117 4 KILILGPIMAGKTVLANALC 23 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~ 23 (135)
-++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47899999999999999986
No 393
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.77 E-value=3.4e-05 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 394
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.77 E-value=2.9e-05 Score=46.94 Aligned_cols=26 Identities=46% Similarity=0.505 Sum_probs=22.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
-.++++|++|+|||+++..++.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999986543
No 395
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.76 E-value=3.4e-05 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 396
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.76 E-value=2.6e-05 Score=48.03 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.4
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999975
No 397
>PRK06217 hypothetical protein; Validated
Probab=97.76 E-value=2.9e-05 Score=50.04 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.+|+|+|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 398
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.76 E-value=3.8e-05 Score=50.50 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.+.++|++|+|||||++.+.+...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998654
No 399
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=3.7e-05 Score=51.44 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 400
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.75 E-value=2.9e-05 Score=50.27 Aligned_cols=50 Identities=8% Similarity=-0.072 Sum_probs=36.7
Q ss_pred cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 66 FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++.++..++++++++++|+|+++... .|...+... ..+.|+++|+||+|.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl 73 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDL 73 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhc
Confidence 57788889999999999999987542 122233222 136899999999995
No 401
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=4e-05 Score=50.78 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998643
No 402
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=4.1e-05 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999998654
No 403
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.75 E-value=2.5e-05 Score=50.03 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 404
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.74 E-value=3.6e-05 Score=50.87 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 478999999999999999998654
No 405
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.74 E-value=4.2e-05 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.+.++|++|+|||||++.+.+...
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998654
No 406
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.74 E-value=4.2e-05 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998644
No 407
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=3.4e-05 Score=48.45 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.3
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~ 25 (135)
+.+||.+-|+|||||||++.++...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHH
Confidence 4689999999999999999998853
No 408
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=3.6e-05 Score=50.08 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=21.0
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++|++|||||||+|.+.+-..+
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCc
Confidence 689999999999999999876544
No 409
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=3.9e-05 Score=50.50 Aligned_cols=24 Identities=46% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998644
No 410
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.73 E-value=5.9e-05 Score=47.98 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.+++.||+|+|||+|++.++....+
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCC
Confidence 4789999999999999999876553
No 411
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.73 E-value=4.4e-05 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 412
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.73 E-value=4.4e-05 Score=50.29 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998643
No 413
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.73 E-value=4.5e-05 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 414
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.73 E-value=4.4e-05 Score=50.94 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 415
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00038 Score=52.00 Aligned_cols=106 Identities=10% Similarity=0.167 Sum_probs=60.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+=++++||+|+|||||++.|...........-.| .++. ..+....+++..+|. +.. . .-....-+|.+++
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiTv---vsgK~RRiTflEcp~-Dl~-~-miDvaKIaDLVlL 139 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PITV---VSGKTRRITFLECPS-DLH-Q-MIDVAKIADLVLL 139 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceEE---eecceeEEEEEeChH-HHH-H-HHhHHHhhheeEE
Confidence 4577999999999999998876422111111111 1111 123667889999883 211 1 2233456889999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+|..=.-..+.+ +++..+..+ + =..++-|.+..|.
T Consensus 140 lIdgnfGfEMETm-EFLnil~~H-G--mPrvlgV~ThlDl 175 (1077)
T COG5192 140 LIDGNFGFEMETM-EFLNILISH-G--MPRVLGVVTHLDL 175 (1077)
T ss_pred EeccccCceehHH-HHHHHHhhc-C--CCceEEEEeeccc
Confidence 9997644333222 333333322 1 1346667888884
No 416
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.73 E-value=4e-05 Score=50.70 Aligned_cols=24 Identities=29% Similarity=0.170 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 417
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=4.6e-05 Score=50.22 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998643
No 418
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.72 E-value=0.00051 Score=38.95 Aligned_cols=97 Identities=16% Similarity=0.096 Sum_probs=55.8
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-hHHhhccCcEEEEE
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-WPAFQRDVHGIIFV 83 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~~~~i~v 83 (135)
+++.|..|+|||++...+...-.. .+....... .+-+.|+++....... .......++.++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~~v~~~~----------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v 65 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGKRVLLID----------DYVLIDTPPGLGLLVLLCLLALLAADLVIIV 65 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEC----------CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence 678899999999999888874321 111111100 6788998875433221 14556688999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEe
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDN 118 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 118 (135)
.+.... +........++..........+..++.|
T Consensus 66 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 66 TTPEAL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred cCCchh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 886543 3344443333333333333556655544
No 419
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=4.7e-05 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998644
No 420
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.72 E-value=5.1e-05 Score=48.05 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 421
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.72 E-value=4.5e-05 Score=50.51 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999988654
No 422
>KOG0066|consensus
Probab=97.72 E-value=0.00056 Score=49.86 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=24.1
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
|.-+|+|+||+|||||||+..|++...+
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P 639 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLDP 639 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCCC
Confidence 3458999999999999999999986554
No 423
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.72 E-value=3.2e-05 Score=49.57 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
-|+++|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999999853
No 424
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.72 E-value=4.8e-05 Score=49.49 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999998654
No 425
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.72 E-value=4.5e-05 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 478999999999999999998654
No 426
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.72 E-value=3.7e-05 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
+.++||+|+|||||++.+++...
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 67999999999999999999544
No 427
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.71 E-value=3.6e-05 Score=50.38 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=21.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~ 25 (135)
.++|.++|++|+|||||++++.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999988864
No 428
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.71 E-value=0.00023 Score=43.61 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
-|++.|+.|+|||||++.+....
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999864
No 429
>PRK03839 putative kinase; Provisional
Probab=97.71 E-value=3.3e-05 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998864
No 430
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.71 E-value=4.9e-05 Score=50.53 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 431
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.71 E-value=4.7e-05 Score=50.94 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 478999999999999999998644
No 432
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.71 E-value=2.8e-05 Score=51.13 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.5
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy10117 5 ILILGPIMAGKTVLANALC 23 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~ 23 (135)
.+++||+|||||||++.+-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4699999999999998665
No 433
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.70 E-value=5e-05 Score=50.04 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.+.++|++|+|||||++.+.+...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 478999999999999999998654
No 434
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=5.1e-05 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 435
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.70 E-value=4.9e-05 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 367999999999999999998654
No 436
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.70 E-value=5.1e-05 Score=50.13 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 478999999999999999998654
No 437
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=5.2e-05 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 438
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.70 E-value=5.6e-05 Score=49.30 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 439
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.69 E-value=3.6e-05 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~ 25 (135)
.+|++|+|++|||||+|+..++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999888753
No 440
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.69 E-value=9.2e-05 Score=51.14 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=40.7
Q ss_pred HHhhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL 121 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADL 121 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHC
Confidence 44578999999999999988 88888889887753 26899999999995
No 441
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.69 E-value=5.6e-05 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999998654
No 442
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.69 E-value=5.8e-05 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999998654
No 443
>PRK10908 cell division protein FtsE; Provisional
Probab=97.69 E-value=5.8e-05 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 444
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.69 E-value=5e-05 Score=50.56 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
|+++|++|+|||||++.+-+...
T Consensus 33 VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred EEEECCCCCcHHHHHHHHhcccC
Confidence 78999999999999999988433
No 445
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.69 E-value=5.1e-05 Score=49.82 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 468999999999999999998654
No 446
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=6.1e-05 Score=48.33 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.+.++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998644
No 447
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=5.6e-05 Score=50.52 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998654
No 448
>PRK13949 shikimate kinase; Provisional
Probab=97.68 E-value=4.1e-05 Score=48.85 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
+|+|+|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988864
No 449
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.68 E-value=6.1e-05 Score=48.50 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998754
No 450
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=5.1e-05 Score=50.93 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998654
No 451
>KOG0465|consensus
Probab=97.68 E-value=6.2e-05 Score=56.08 Aligned_cols=111 Identities=20% Similarity=0.165 Sum_probs=72.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCC--CC--C------------CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDLT--TA--E------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~--~~--~------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
+|-++..-.+||||+-.+++.-. .. . +.....|++...-.. +..+....+++.||||+-.|.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt--~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAAT--YFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeecee--eeeeccceeEEecCCCceeEE
Confidence 45566677899999998776321 00 0 011112222211111 233457899999999999999
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
-..+..++-.|++|+++|....-.-....-|.+.- + -+.|.+.+.||+|
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-r----y~vP~i~FiNKmD 167 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-R----YNVPRICFINKMD 167 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-h----cCCCeEEEEehhh
Confidence 99999999999999999976543323334443332 2 2789999999999
No 452
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.68 E-value=5.7e-05 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998654
No 453
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.68 E-value=6.4e-05 Score=48.32 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998644
No 454
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.68 E-value=5.9e-05 Score=50.52 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 467999999999999999998654
No 455
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=5.2e-05 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 478999999999999999998654
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.68 E-value=4.4e-05 Score=49.39 Aligned_cols=24 Identities=46% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+||||+++.+++...
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 589999999999999999987543
No 457
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.67 E-value=6.2e-05 Score=50.86 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++|+|++|+|||||++.+.+...+
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4789999999999999999986543
No 458
>PRK14532 adenylate kinase; Provisional
Probab=97.66 E-value=4.3e-05 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
++|+++|+|||||||+..++...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999853
No 459
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.66 E-value=7e-05 Score=47.57 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998654
No 460
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=7.1e-05 Score=47.79 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 461
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=6e-05 Score=49.73 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999998654
No 462
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.66 E-value=6.8e-05 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999654
No 463
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.66 E-value=5.3e-05 Score=47.45 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=35.3
Q ss_pred cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 66 FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++.+..+..+++|.+++|+|.+++..... ..+...+ .. .+.|+++|.||+|.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~-~~---~~~p~iiv~NK~Dl 53 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV-LE---LGKKLLIVLNKADL 53 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH-Hh---CCCcEEEEEEhHHh
Confidence 34567778889999999999987654322 1222212 11 25799999999995
No 464
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.66 E-value=6.5e-05 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998654
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.65 E-value=4.4e-05 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
-|+++|++||||||+++.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999983
No 466
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.65 E-value=5.3e-05 Score=48.29 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
||++-|++|+||||++++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 467
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.65 E-value=0.0004 Score=35.98 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=25.8
Q ss_pred cCcEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 76 DVHGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 76 ~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
-.++++|++|.+..-.+ ++=...++++...- .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 46889999999876543 33344555554432 3899999999998
No 468
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=6.8e-05 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 469
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=7.2e-05 Score=49.02 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 470
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.65 E-value=6.3e-05 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999998754
No 471
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=7e-05 Score=49.86 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 378999999999999999998754
No 472
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.65 E-value=0.00021 Score=45.67 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.+.|+|++|||||||+--+.+...
T Consensus 38 ~vaiVG~SGSGKSTLl~vlAGLd~ 61 (228)
T COG4181 38 TVAIVGPSGSGKSTLLAVLAGLDD 61 (228)
T ss_pred eEEEEcCCCCcHHhHHHHHhcCCC
Confidence 478999999999999999998765
No 473
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=7e-05 Score=50.32 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 474
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=7.3e-05 Score=49.17 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 475
>KOG1143|consensus
Probab=97.64 E-value=0.00017 Score=51.21 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=68.1
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCC----------------ccCC-------cceeEEEEEeee--------ecC
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEE----------------YHPT-------QGVRIVECEHSY--------ALD 49 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~----------------~~~t-------~~~~~~~~~~~~--------~~~ 49 (135)
++++++++|...+|||||+--|..+..... ...| .|++-......+ -.+
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 368999999999999999988776654321 1111 121111111111 122
Q ss_pred CceEEEEEEecCCCcccccchHHhhc--cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 50 TSKTEIELWDTSGDHKFESVWPAFQR--DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 50 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
...--+++.|..|+.+|....-.-+. ..|.++++++....-.+. .++.+-.+.. -++|++++.+|.|
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~D 314 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMD 314 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeec
Confidence 23345789999999888643333222 357778888876543321 2333333321 2899999999999
No 476
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.64 E-value=6.3e-05 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 478999999999999999998643
No 477
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.64 E-value=7.1e-05 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998754
No 478
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.64 E-value=7.5e-05 Score=48.83 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.+.++|++|+|||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998654
No 479
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.64 E-value=7.8e-05 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 478999999999999999998754
No 480
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.64 E-value=7e-05 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 481
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.63 E-value=5.3e-05 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999875
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.63 E-value=5.2e-05 Score=46.54 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.|+++|++|+|||+|++.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999888753
No 483
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=4.4e-05 Score=49.02 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
=+++.||+|+||||+++.|....
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 37899999999999999999765
No 484
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.63 E-value=4.9e-05 Score=45.72 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=19.3
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988875
No 485
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.63 E-value=7.5e-05 Score=49.31 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 486
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0004 Score=51.65 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|+|+|++|+||||++..|..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988875
No 487
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=7.2e-05 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 478999999999999999998654
No 488
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.63 E-value=8.1e-05 Score=47.54 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 478999999999999999998654
No 489
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.63 E-value=5.6e-05 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 490
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.62 E-value=8e-05 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 491
>PRK12289 GTPase RsgA; Reviewed
Probab=97.62 E-value=0.0002 Score=50.83 Aligned_cols=49 Identities=16% Similarity=0.023 Sum_probs=38.4
Q ss_pred hHHhhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DL 132 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADL 132 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhc
Confidence 344578999999999998876 45567888876632 36899999999995
No 492
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.62 E-value=5.2e-05 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|+|+|++|||||||++.|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 4789999999999999999754
No 493
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.61 E-value=8.2e-05 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998643
No 494
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.61 E-value=6.5e-05 Score=50.15 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999999754
No 495
>PRK02496 adk adenylate kinase; Provisional
Probab=97.61 E-value=6.7e-05 Score=48.34 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.|++++|++||||||+.+.+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 496
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.61 E-value=8.1e-05 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998644
No 497
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.61 E-value=7.2e-05 Score=51.84 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.6
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
+.++|++|+|||||++.+++...+
T Consensus 34 ~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 34 FGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC
Confidence 679999999999999999997654
No 498
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00025 Score=49.43 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=65.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeE----------------EEEEeeeecC------CceEEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRI----------------VECEHSYALD------TSKTEIE 56 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~----------------~~~~~~~~~~------~~~~~~~ 56 (135)
.++|-.+|.-.-|||||...|++-... .+....+.+.. ..+......+ .....+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 478999999999999999999863221 11111111100 0111111111 2345688
Q ss_pred EEecCCCcccccchHHhhcc---CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 57 LWDTSGDHKFESVWPAFQRD---VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 57 i~d~~g~~~~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+.|.||++... ...++. -|++++|+..+.+-.--+.++.+..+.-. .-..++++-||.|
T Consensus 90 fVDaPGHe~LM---ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKID 151 (415)
T COG5257 90 FVDAPGHETLM---ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKID 151 (415)
T ss_pred EeeCCchHHHH---HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccc
Confidence 99999987543 333343 48999999988653322333333322111 1357899999999
No 499
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.61 E-value=7e-05 Score=51.71 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=22.0
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++||+|+|||||++.+.+...+
T Consensus 31 vaLlGpSGaGKsTlLRiIAGLe~p 54 (345)
T COG1118 31 VALLGPSGAGKSTLLRIIAGLETP 54 (345)
T ss_pred EEEECCCCCcHHHHHHHHhCcCCC
Confidence 689999999999999999998765
No 500
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=8.3e-05 Score=47.41 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 468999999999999999999754
Done!