Query psy10117
Match_columns 135
No_of_seqs 142 out of 1213
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 18:21:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.9E-35 2E-39 191.5 12.3 118 2-122 13-130 (216)
2 1c1y_A RAS-related protein RAP 100.0 3.2E-29 1.1E-33 157.3 14.5 118 2-122 3-120 (167)
3 1zd9_A ADP-ribosylation factor 100.0 3.8E-29 1.3E-33 160.4 14.8 115 2-122 22-136 (188)
4 1ek0_A Protein (GTP-binding pr 100.0 9.5E-29 3.2E-33 155.4 15.8 118 2-122 3-120 (170)
5 3q3j_B RHO-related GTP-binding 100.0 4E-29 1.4E-33 163.5 14.5 116 2-122 27-143 (214)
6 3kkq_A RAS-related protein M-R 100.0 5.3E-29 1.8E-33 158.8 14.7 118 2-122 18-135 (183)
7 1z06_A RAS-related protein RAB 100.0 5.5E-29 1.9E-33 159.7 14.7 119 2-122 20-139 (189)
8 3t5g_A GTP-binding protein RHE 100.0 6.4E-29 2.2E-33 158.1 14.9 118 2-122 6-123 (181)
9 1r2q_A RAS-related protein RAB 100.0 1.2E-28 4.2E-33 154.9 15.8 118 2-122 6-123 (170)
10 1x3s_A RAS-related protein RAB 100.0 1E-28 3.5E-33 158.7 15.7 119 2-122 15-133 (195)
11 1r8s_A ADP-ribosylation factor 100.0 4.7E-29 1.6E-33 156.3 13.7 113 3-122 1-113 (164)
12 2ew1_A RAS-related protein RAB 100.0 6.1E-29 2.1E-33 161.3 14.4 118 2-122 26-143 (201)
13 1m7b_A RND3/RHOE small GTP-bin 100.0 6.6E-29 2.3E-33 158.8 14.2 117 2-123 7-124 (184)
14 2hup_A RAS-related protein RAB 100.0 4.6E-29 1.6E-33 161.7 13.5 118 2-122 29-146 (201)
15 1z0j_A RAB-22, RAS-related pro 100.0 2.3E-28 8E-33 153.7 16.3 118 2-122 6-123 (170)
16 3tw8_B RAS-related protein RAB 100.0 1.4E-28 4.8E-33 156.2 15.1 117 2-122 9-125 (181)
17 4bas_A ADP-ribosylation factor 100.0 5.4E-29 1.9E-33 160.5 13.3 115 2-122 17-139 (199)
18 1ksh_A ARF-like protein 2; sma 100.0 1.1E-28 3.9E-33 157.7 14.5 114 2-122 18-131 (186)
19 1u8z_A RAS-related protein RAL 100.0 9.8E-29 3.4E-33 155.0 14.0 118 2-122 4-121 (168)
20 2fg5_A RAB-22B, RAS-related pr 100.0 2.3E-28 7.9E-33 157.2 15.9 118 2-122 23-140 (192)
21 2efe_B Small GTP-binding prote 100.0 3E-28 1E-32 154.8 16.0 118 2-122 12-129 (181)
22 1kao_A RAP2A; GTP-binding prot 100.0 1.7E-28 5.9E-33 153.7 14.6 118 2-122 3-120 (167)
23 1z2a_A RAS-related protein RAB 100.0 1.3E-28 4.3E-33 154.7 13.8 117 2-122 5-121 (168)
24 1gwn_A RHO-related GTP-binding 100.0 1.3E-28 4.3E-33 160.3 14.2 117 2-123 28-145 (205)
25 1zj6_A ADP-ribosylation factor 100.0 9.2E-29 3.1E-33 158.4 13.4 114 2-122 16-129 (187)
26 3reg_A RHO-like small GTPase; 100.0 1.6E-28 5.4E-33 158.1 14.4 116 2-122 23-139 (194)
27 3c5c_A RAS-like protein 12; GD 100.0 1.1E-28 3.7E-33 158.3 13.6 117 2-122 21-139 (187)
28 4dsu_A GTPase KRAS, isoform 2B 100.0 2.7E-28 9.2E-33 155.9 15.4 118 2-122 4-121 (189)
29 3ihw_A Centg3; RAS, centaurin, 100.0 1.1E-28 3.8E-33 158.0 13.6 112 2-122 20-131 (184)
30 3tkl_A RAS-related protein RAB 100.0 3.1E-28 1.1E-32 156.6 15.7 118 2-122 16-133 (196)
31 2a5j_A RAS-related protein RAB 100.0 1.7E-28 5.8E-33 157.7 14.5 118 2-122 21-138 (191)
32 1f6b_A SAR1; gtpases, N-termin 100.0 7.4E-29 2.5E-33 160.4 12.9 115 2-123 25-139 (198)
33 3oes_A GTPase rhebl1; small GT 100.0 1.3E-28 4.5E-33 159.4 14.0 118 2-122 24-141 (201)
34 2fn4_A P23, RAS-related protei 100.0 1.8E-28 6.1E-33 155.7 14.3 118 2-122 9-126 (181)
35 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.4E-28 8.1E-33 154.8 14.8 119 2-122 7-128 (177)
36 1upt_A ARL1, ADP-ribosylation 100.0 3.7E-28 1.2E-32 153.1 15.5 114 2-122 7-120 (171)
37 1m2o_B GTP-binding protein SAR 100.0 2.2E-28 7.4E-33 157.3 14.6 115 2-123 23-137 (190)
38 2gf9_A RAS-related protein RAB 100.0 4E-28 1.4E-32 155.6 15.8 118 2-122 22-139 (189)
39 1g16_A RAS-related protein SEC 100.0 1.5E-28 5.1E-33 154.6 13.5 118 2-122 3-120 (170)
40 3bc1_A RAS-related protein RAB 100.0 3.1E-28 1E-32 156.1 15.1 121 2-122 11-139 (195)
41 2fu5_C RAS-related protein RAB 100.0 3.4E-29 1.2E-33 159.6 10.5 118 2-122 8-125 (183)
42 2bcg_Y Protein YP2, GTP-bindin 100.0 3.2E-28 1.1E-32 158.0 15.1 118 2-122 8-125 (206)
43 1z08_A RAS-related protein RAB 100.0 1.3E-28 4.4E-33 155.0 12.9 118 2-122 6-123 (170)
44 2oil_A CATX-8, RAS-related pro 100.0 3.7E-28 1.3E-32 156.2 15.3 118 2-122 25-142 (193)
45 2y8e_A RAB-protein 6, GH09086P 100.0 2.8E-28 9.6E-33 154.5 14.5 118 2-122 14-131 (179)
46 2h57_A ADP-ribosylation factor 100.0 2.9E-28 1E-32 156.4 14.6 115 2-122 21-138 (190)
47 1zbd_A Rabphilin-3A; G protein 100.0 4.3E-28 1.5E-32 157.0 15.5 118 2-122 8-125 (203)
48 1z0f_A RAB14, member RAS oncog 100.0 4.1E-28 1.4E-32 153.8 15.0 118 2-122 15-132 (179)
49 2bme_A RAB4A, RAS-related prot 100.0 2.4E-28 8.1E-33 156.0 14.0 118 2-122 10-127 (186)
50 2h17_A ADP-ribosylation factor 100.0 1.5E-28 5.1E-33 156.8 12.9 114 2-122 21-134 (181)
51 1fzq_A ADP-ribosylation factor 100.0 1.5E-28 5.2E-33 156.9 12.8 114 2-122 16-129 (181)
52 3cbq_A GTP-binding protein REM 100.0 1.5E-28 5.1E-33 158.7 12.9 119 2-122 23-142 (195)
53 2bov_A RAla, RAS-related prote 100.0 4.3E-28 1.5E-32 157.1 15.1 118 2-122 14-131 (206)
54 2b6h_A ADP-ribosylation factor 100.0 1.6E-28 5.4E-33 158.2 12.9 114 2-122 29-142 (192)
55 2il1_A RAB12; G-protein, GDP, 100.0 2E-28 6.9E-33 157.6 13.3 118 2-122 26-143 (192)
56 2atx_A Small GTP binding prote 100.0 3E-28 1E-32 156.7 14.2 117 2-123 18-135 (194)
57 2a9k_A RAS-related protein RAL 100.0 3.6E-28 1.2E-32 155.0 14.3 118 2-122 18-135 (187)
58 2q3h_A RAS homolog gene family 100.0 3E-28 1E-32 157.5 13.9 116 2-122 20-136 (201)
59 2g6b_A RAS-related protein RAB 100.0 5.2E-28 1.8E-32 153.6 14.6 118 2-122 10-128 (180)
60 2hxs_A RAB-26, RAS-related pro 100.0 1.4E-28 4.8E-33 156.0 11.8 120 2-122 6-127 (178)
61 2j0v_A RAC-like GTP-binding pr 100.0 1.9E-28 6.5E-33 159.7 12.4 116 2-122 9-125 (212)
62 3q85_A GTP-binding protein REM 100.0 3E-28 1E-32 153.3 12.9 119 2-122 2-121 (169)
63 2p5s_A RAS and EF-hand domain 100.0 2.3E-28 7.8E-33 158.1 12.3 118 2-122 28-145 (199)
64 3clv_A RAB5 protein, putative; 100.0 1E-27 3.5E-32 154.7 15.2 117 2-121 7-158 (208)
65 2atv_A RERG, RAS-like estrogen 100.0 5.4E-28 1.9E-32 155.9 13.8 117 2-122 28-144 (196)
66 3q72_A GTP-binding protein RAD 100.0 3.4E-28 1.2E-32 152.7 12.4 117 2-122 2-118 (166)
67 1ky3_A GTP-binding protein YPT 100.0 3.3E-28 1.1E-32 154.6 12.4 120 2-122 8-130 (182)
68 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.6E-28 1.9E-32 154.1 13.5 116 2-122 5-121 (186)
69 2ce2_X GTPase HRAS; signaling 100.0 1.2E-27 4E-32 149.7 14.6 118 2-122 3-120 (166)
70 2iwr_A Centaurin gamma 1; ANK 100.0 8E-28 2.7E-32 152.7 14.0 112 2-122 7-120 (178)
71 3dz8_A RAS-related protein RAB 100.0 8.5E-29 2.9E-33 159.1 9.6 118 2-122 23-140 (191)
72 1vg8_A RAS-related protein RAB 100.0 7.9E-28 2.7E-32 156.0 14.2 120 2-123 8-130 (207)
73 2f7s_A C25KG, RAS-related prot 100.0 1.8E-28 6.3E-33 160.3 11.2 121 2-122 25-153 (217)
74 3cpj_B GTP-binding protein YPT 100.0 4.9E-28 1.7E-32 159.1 13.3 118 2-122 13-130 (223)
75 2zej_A Dardarin, leucine-rich 100.0 1.1E-28 3.7E-33 157.9 9.8 119 2-122 2-124 (184)
76 2yc2_C IFT27, small RAB-relate 100.0 7.3E-29 2.5E-33 160.8 9.1 121 2-122 20-144 (208)
77 2x77_A ADP-ribosylation factor 100.0 3.9E-28 1.4E-32 155.6 12.2 114 2-122 22-135 (189)
78 2o52_A RAS-related protein RAB 100.0 3.4E-28 1.2E-32 157.5 12.0 118 2-122 25-142 (200)
79 3cph_A RAS-related protein SEC 100.0 1.5E-27 5.2E-32 155.3 15.0 118 2-122 20-137 (213)
80 3gj0_A GTP-binding nuclear pro 100.0 2.4E-28 8.3E-33 160.2 10.9 117 2-122 15-131 (221)
81 1moz_A ARL1, ADP-ribosylation 100.0 3.8E-28 1.3E-32 154.7 11.3 114 2-122 18-131 (183)
82 2j1l_A RHO-related GTP-binding 100.0 5.1E-28 1.7E-32 158.2 12.0 116 2-122 34-150 (214)
83 3con_A GTPase NRAS; structural 100.0 2.1E-27 7.2E-32 152.2 14.6 118 2-122 21-138 (190)
84 2nzj_A GTP-binding protein REM 100.0 1.6E-27 5.3E-32 150.7 13.8 118 2-122 4-123 (175)
85 2erx_A GTP-binding protein DI- 100.0 1.6E-27 5.6E-32 150.0 13.4 118 2-122 3-121 (172)
86 2gco_A H9, RHO-related GTP-bin 100.0 1.2E-27 4.1E-32 155.0 12.9 116 2-122 25-141 (201)
87 4gzl_A RAS-related C3 botulinu 100.0 1.3E-27 4.4E-32 155.2 13.0 116 2-122 30-146 (204)
88 3bwd_D RAC-like GTP-binding pr 100.0 2.1E-28 7.2E-33 155.7 9.1 116 2-122 8-124 (182)
89 2fv8_A H6, RHO-related GTP-bin 100.0 1.9E-27 6.6E-32 154.6 13.4 116 2-122 25-141 (207)
90 3l0i_B RAS-related protein RAB 99.9 1E-28 3.4E-33 159.7 5.6 118 2-122 33-150 (199)
91 4djt_A GTP-binding nuclear pro 99.9 3.4E-27 1.2E-31 154.3 12.7 119 2-122 11-129 (218)
92 2gf0_A GTP-binding protein DI- 99.9 3.9E-27 1.3E-31 151.8 12.5 118 2-122 8-126 (199)
93 3t1o_A Gliding protein MGLA; G 99.9 1.2E-27 4E-32 153.8 9.3 117 2-122 14-147 (198)
94 2g3y_A GTP-binding protein GEM 99.9 1.4E-26 4.7E-31 151.3 12.8 118 2-122 37-157 (211)
95 3llu_A RAS-related GTP-binding 99.9 6.7E-27 2.3E-31 150.9 10.3 116 2-122 20-141 (196)
96 3o47_A ADP-ribosylation factor 99.9 1.1E-26 3.9E-31 160.6 11.8 114 2-122 165-278 (329)
97 2cjw_A GTP-binding protein GEM 99.9 6.6E-26 2.3E-30 146.0 13.8 118 2-122 6-126 (192)
98 3r7w_A Gtpase1, GTP-binding pr 99.9 8.1E-26 2.8E-30 155.1 14.4 117 2-123 3-128 (307)
99 2f9l_A RAB11B, member RAS onco 99.9 2.5E-25 8.4E-30 143.8 15.2 118 2-122 5-122 (199)
100 3lvq_E ARF-GAP with SH3 domain 99.9 1.3E-25 4.3E-30 162.7 15.3 114 2-122 322-435 (497)
101 3r7w_B Gtpase2, GTP-binding pr 99.9 2.1E-26 7.3E-31 158.0 10.4 111 4-123 1-119 (331)
102 2wkq_A NPH1-1, RAS-related C3 99.9 2.4E-25 8.4E-30 153.4 13.1 116 2-122 155-271 (332)
103 1oix_A RAS-related protein RAB 99.9 1E-24 3.5E-29 140.3 14.8 118 2-122 29-146 (191)
104 3th5_A RAS-related C3 botulinu 99.9 1.3E-27 4.3E-32 155.0 0.0 116 2-122 30-146 (204)
105 2fh5_B SR-beta, signal recogni 99.9 7.2E-25 2.5E-29 142.9 13.0 117 2-122 7-127 (214)
106 2ged_A SR-beta, signal recogni 99.9 2E-25 6.9E-30 143.3 6.8 110 2-122 48-168 (193)
107 1nrj_B SR-beta, signal recogni 99.9 3.6E-25 1.2E-29 144.7 7.7 110 2-122 12-132 (218)
108 3c5h_A Glucocorticoid receptor 99.9 6E-26 2E-30 152.1 3.8 121 2-122 19-210 (255)
109 2lkc_A Translation initiation 99.9 1.8E-24 6.3E-29 137.0 8.6 113 2-123 8-120 (178)
110 2wji_A Ferrous iron transport 99.9 3.7E-23 1.3E-27 130.0 13.0 110 2-122 3-120 (165)
111 3dpu_A RAB family protein; roc 99.9 6.9E-24 2.4E-28 154.8 10.6 116 2-122 41-162 (535)
112 2gj8_A MNME, tRNA modification 99.9 4.6E-23 1.6E-27 130.5 12.0 115 2-122 4-127 (172)
113 2cxx_A Probable GTP-binding pr 99.9 3.4E-24 1.2E-28 137.0 4.9 113 3-123 2-135 (190)
114 2dyk_A GTP-binding protein; GT 99.9 1.8E-22 6E-27 125.8 12.2 112 3-123 2-121 (161)
115 2wjg_A FEOB, ferrous iron tran 99.9 1.5E-22 5.3E-27 129.2 11.0 109 2-121 7-123 (188)
116 2qu8_A Putative nucleolar GTP- 99.9 3.9E-22 1.3E-26 131.4 12.0 113 2-122 29-154 (228)
117 1svi_A GTP-binding protein YSX 99.9 1.3E-22 4.6E-27 130.2 8.7 109 2-122 23-146 (195)
118 4fid_A G protein alpha subunit 99.9 2E-21 6.9E-26 134.2 11.5 83 33-121 147-239 (340)
119 3iby_A Ferrous iron transport 99.9 7E-22 2.4E-26 132.4 8.5 108 3-121 2-121 (256)
120 3a1s_A Iron(II) transport prot 99.9 2.8E-21 9.7E-26 129.6 11.2 109 2-121 5-121 (258)
121 3i8s_A Ferrous iron transport 99.9 1.9E-21 6.4E-26 131.5 10.1 109 2-121 3-123 (274)
122 3ohm_A Guanine nucleotide-bind 99.9 7.8E-21 2.7E-25 130.8 13.3 84 32-121 152-245 (327)
123 3iev_A GTP-binding protein ERA 99.9 1.2E-20 4.2E-25 129.4 13.6 111 3-122 11-134 (308)
124 3pqc_A Probable GTP-binding pr 99.9 2E-21 6.9E-26 124.4 8.2 108 2-122 23-145 (195)
125 1wf3_A GTP-binding protein; GT 99.9 2.6E-20 9E-25 127.4 13.8 112 3-122 8-129 (301)
126 1cip_A Protein (guanine nucleo 99.8 2.6E-20 9E-25 129.6 13.4 72 51-122 191-272 (353)
127 3b1v_A Ferrous iron uptake tra 99.8 5.1E-21 1.8E-25 129.2 9.4 108 2-121 3-118 (272)
128 3def_A T7I23.11 protein; chlor 99.8 2.7E-20 9.2E-25 125.0 12.8 115 2-122 36-163 (262)
129 3k53_A Ferrous iron transport 99.8 1.5E-20 5.3E-25 126.8 9.9 110 2-121 3-120 (271)
130 3gee_A MNME, tRNA modification 99.8 2E-20 6.7E-25 134.7 11.0 114 2-122 233-355 (476)
131 3lxx_A GTPase IMAP family memb 99.8 2.3E-20 8E-25 123.7 10.1 115 2-122 29-157 (239)
132 1mky_A Probable GTP-binding pr 99.8 1.1E-19 3.7E-24 130.0 13.1 111 3-122 2-122 (439)
133 4dhe_A Probable GTP-binding pr 99.8 1.6E-20 5.5E-25 122.9 7.7 115 2-122 29-156 (223)
134 1h65_A Chloroplast outer envel 99.8 4.2E-19 1.4E-23 119.7 13.2 117 2-122 39-166 (270)
135 3lxw_A GTPase IMAP family memb 99.8 2.7E-19 9.1E-24 119.3 12.0 114 2-122 21-151 (247)
136 2hjg_A GTP-binding protein ENG 99.8 3.7E-20 1.3E-24 132.3 8.0 113 2-122 3-123 (436)
137 1lnz_A SPO0B-associated GTP-bi 99.8 8.3E-20 2.8E-24 126.7 9.4 114 4-122 160-286 (342)
138 2xtp_A GTPase IMAP family memb 99.8 6E-19 2E-23 118.2 13.2 117 2-123 22-152 (260)
139 3t5d_A Septin-7; GTP-binding p 99.8 4.4E-19 1.5E-23 119.8 12.4 115 1-122 7-156 (274)
140 2hjg_A GTP-binding protein ENG 99.8 7E-20 2.4E-24 130.9 7.6 111 3-122 176-298 (436)
141 2e87_A Hypothetical protein PH 99.8 3.8E-18 1.3E-22 119.2 14.4 112 3-122 168-292 (357)
142 3sjy_A Translation initiation 99.8 3.7E-18 1.2E-22 120.9 13.9 114 2-122 8-141 (403)
143 2qag_A Septin-2, protein NEDD5 99.8 3.4E-19 1.2E-23 124.6 8.1 114 2-122 37-186 (361)
144 4dcu_A GTP-binding protein ENG 99.8 2.4E-19 8.2E-24 128.8 6.9 113 2-122 23-143 (456)
145 1jny_A EF-1-alpha, elongation 99.8 2.9E-19 9.7E-24 127.7 7.0 115 2-123 6-157 (435)
146 3p26_A Elongation factor 1 alp 99.8 9.2E-19 3.1E-23 126.5 9.7 112 2-122 33-183 (483)
147 3cb4_D GTP-binding protein LEP 99.8 2E-18 7E-23 127.0 11.6 116 3-123 5-136 (599)
148 1xzp_A Probable tRNA modificat 99.8 1.2E-18 4E-23 125.7 10.1 109 3-122 244-362 (482)
149 3izy_P Translation initiation 99.8 2.3E-20 7.8E-25 135.7 0.7 113 2-122 4-116 (537)
150 3qq5_A Small GTP-binding prote 99.8 3.9E-19 1.3E-23 126.3 6.9 111 2-122 34-152 (423)
151 3geh_A MNME, tRNA modification 99.8 5.3E-19 1.8E-23 126.9 7.6 110 2-122 224-342 (462)
152 1zun_B Sulfate adenylate trans 99.8 1E-17 3.6E-22 119.6 14.0 111 3-123 25-170 (434)
153 2ywe_A GTP-binding protein LEP 99.8 5.3E-18 1.8E-22 124.8 12.6 116 3-123 7-138 (600)
154 2c78_A Elongation factor TU-A; 99.8 8.4E-18 2.9E-22 119.1 12.6 115 2-123 11-141 (405)
155 1zo1_I IF2, translation initia 99.8 2.7E-19 9.3E-24 129.2 4.9 112 3-123 5-116 (501)
156 1g7s_A Translation initiation 99.8 9.2E-19 3.1E-23 128.9 7.5 112 3-122 6-134 (594)
157 3tr5_A RF-3, peptide chain rel 99.8 8.6E-18 2.9E-22 122.4 12.5 111 2-123 13-147 (528)
158 2elf_A Protein translation elo 99.8 2E-18 6.7E-23 121.0 8.8 101 4-122 23-125 (370)
159 2h5e_A Peptide chain release f 99.8 6.6E-18 2.3E-22 123.0 11.8 115 2-123 13-147 (529)
160 3j2k_7 ERF3, eukaryotic polype 99.8 4.2E-18 1.4E-22 121.8 10.4 113 2-122 17-167 (439)
161 1ega_A Protein (GTP-binding pr 99.8 9.3E-18 3.2E-22 114.8 11.7 109 3-123 9-129 (301)
162 1azs_C GS-alpha; complex (lyas 99.8 1.1E-17 3.6E-22 118.0 11.9 84 33-122 203-296 (402)
163 1r5b_A Eukaryotic peptide chai 99.8 1.1E-18 3.8E-23 125.6 6.8 115 2-123 43-194 (467)
164 1s0u_A EIF-2-gamma, translatio 99.8 1.8E-17 6.3E-22 117.5 12.8 118 2-122 8-147 (408)
165 2qtf_A Protein HFLX, GTP-bindi 99.8 1.1E-17 3.9E-22 116.9 11.5 110 5-122 182-304 (364)
166 3izq_1 HBS1P, elongation facto 99.8 3.6E-18 1.2E-22 126.3 9.2 113 2-123 167-318 (611)
167 4dcu_A GTP-binding protein ENG 99.7 5.9E-18 2E-22 121.5 9.8 112 2-122 195-318 (456)
168 1d2e_A Elongation factor TU (E 99.7 1.2E-17 4E-22 118.2 11.1 114 2-122 3-131 (397)
169 1kk1_A EIF2gamma; initiation o 99.7 2.6E-17 9E-22 116.8 12.6 114 2-122 10-149 (410)
170 1dar_A EF-G, elongation factor 99.7 1.8E-17 6E-22 124.1 12.1 111 2-123 12-142 (691)
171 1n0u_A EF-2, elongation factor 99.7 1.5E-17 5.2E-22 126.7 11.7 115 3-122 20-162 (842)
172 2aka_B Dynamin-1; fusion prote 99.7 1.4E-17 4.9E-22 113.3 10.0 115 3-122 27-204 (299)
173 1wb1_A Translation elongation 99.7 4.7E-18 1.6E-22 122.7 7.9 111 2-123 19-138 (482)
174 1f60_A Elongation factor EEF1A 99.7 6.8E-18 2.3E-22 121.2 8.2 112 2-123 7-158 (458)
175 1pui_A ENGB, probable GTP-bind 99.7 1.6E-17 5.3E-22 107.7 8.2 108 3-122 27-149 (210)
176 2xex_A Elongation factor G; GT 99.7 7.5E-17 2.6E-21 120.8 11.8 110 3-123 11-140 (693)
177 2xtz_A Guanine nucleotide-bind 99.7 3.8E-17 1.3E-21 113.8 9.1 72 51-122 181-262 (354)
178 1jwy_B Dynamin A GTPase domain 99.7 5.8E-17 2E-21 111.1 10.0 66 53-122 131-210 (315)
179 2qpt_A EH domain-containing pr 99.7 3.2E-17 1.1E-21 120.0 8.8 115 3-122 66-230 (550)
180 1zcb_A G alpha I/13; GTP-bindi 99.7 6.5E-17 2.2E-21 113.0 9.9 98 19-122 166-280 (362)
181 1mky_A Probable GTP-binding pr 99.7 1.4E-16 5E-21 113.9 11.6 111 3-122 181-304 (439)
182 3t34_A Dynamin-related protein 99.7 2.1E-16 7.3E-21 110.4 11.9 115 4-122 36-215 (360)
183 2rdo_7 EF-G, elongation factor 99.7 3.5E-16 1.2E-20 117.3 12.9 116 3-123 11-147 (704)
184 2j69_A Bacterial dynamin-like 99.7 1.6E-16 5.4E-21 119.1 10.1 66 53-122 174-242 (695)
185 3avx_A Elongation factor TS, e 99.7 1.9E-16 6.3E-21 122.7 9.7 115 2-123 296-425 (1289)
186 1wxq_A GTP-binding protein; st 99.7 1.9E-16 6.3E-21 111.9 8.9 87 3-89 1-114 (397)
187 1jal_A YCHF protein; nucleotid 99.7 2.2E-15 7.5E-20 105.0 13.3 88 1-88 1-108 (363)
188 2dy1_A Elongation factor G; tr 99.7 7E-16 2.4E-20 115.1 11.6 114 3-123 10-139 (665)
189 3mca_A HBS1, elongation factor 99.7 2.6E-17 9E-22 121.3 3.2 113 2-122 177-327 (592)
190 2qag_C Septin-7; cell cycle, c 99.6 3.5E-15 1.2E-19 105.9 10.9 115 1-122 30-179 (418)
191 2qnr_A Septin-2, protein NEDD5 99.6 1.8E-15 6E-20 103.5 6.5 114 1-122 17-167 (301)
192 2x2e_A Dynamin-1; nitration, h 99.6 7.3E-15 2.5E-19 102.4 9.3 115 3-122 32-209 (353)
193 1u0l_A Probable GTPase ENGC; p 99.6 1.5E-15 5.2E-20 103.8 4.3 94 17-122 32-127 (301)
194 1udx_A The GTP-binding protein 99.5 5E-14 1.7E-18 99.9 10.5 114 4-123 159-282 (416)
195 3vqt_A RF-3, peptide chain rel 99.5 3.3E-13 1.1E-17 98.8 11.8 115 4-125 33-167 (548)
196 2ohf_A Protein OLA1, GTP-bindi 99.5 4.2E-14 1.4E-18 99.5 5.5 91 2-92 22-132 (396)
197 4a9a_A Ribosome-interacting GT 99.5 4.6E-13 1.6E-17 93.8 9.4 112 3-122 73-194 (376)
198 2dby_A GTP-binding protein; GD 99.5 4.5E-13 1.5E-17 93.8 9.3 86 3-88 2-111 (368)
199 4fn5_A EF-G 1, elongation fact 99.4 4.6E-12 1.6E-16 95.3 12.7 115 4-123 15-150 (709)
200 3j25_A Tetracycline resistance 99.3 1.4E-12 4.6E-17 97.2 3.2 114 4-124 4-133 (638)
201 3p32_A Probable GTPase RV1496/ 99.3 9.3E-12 3.2E-16 86.8 7.1 59 52-122 171-229 (355)
202 3zvr_A Dynamin-1; hydrolase, D 99.3 9.5E-11 3.3E-15 88.4 12.0 65 54-122 151-229 (772)
203 2www_A Methylmalonic aciduria 99.2 2.6E-11 8.8E-16 84.4 7.9 59 52-122 166-224 (349)
204 2wsm_A Hydrogenase expression/ 99.2 6.2E-12 2.1E-16 81.9 3.8 108 3-122 31-166 (221)
205 2hf9_A Probable hydrogenase ni 99.2 1E-13 3.6E-18 90.6 -6.1 34 3-36 39-72 (226)
206 1yrb_A ATP(GTP)binding protein 99.2 7.6E-11 2.6E-15 78.6 6.9 66 53-122 109-183 (262)
207 3sop_A Neuronal-specific septi 99.1 3.5E-10 1.2E-14 76.2 9.2 113 1-121 1-151 (270)
208 2p67_A LAO/AO transport system 99.1 4.7E-11 1.6E-15 82.9 5.0 60 52-123 148-207 (341)
209 3l82_B F-box only protein 4; T 99.1 3.6E-11 1.2E-15 77.6 3.7 59 61-120 110-172 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 4.5E-10 1.5E-14 79.2 8.7 86 3-88 21-127 (392)
211 2qag_B Septin-6, protein NEDD5 99.1 2.8E-09 9.6E-14 75.8 11.6 61 3-63 43-105 (427)
212 2qm8_A GTPase/ATPase; G protei 99.0 9.4E-10 3.2E-14 76.3 6.5 59 52-122 147-205 (337)
213 3l2o_B F-box only protein 4; s 98.9 3.1E-10 1.1E-14 76.6 1.8 61 60-121 194-259 (312)
214 3ec1_A YQEH GTPase; atnos1, at 98.9 9.4E-10 3.2E-14 77.1 4.0 107 3-121 163-285 (369)
215 2yv5_A YJEQ protein; hydrolase 98.8 1.1E-08 3.7E-13 69.9 6.8 56 63-122 66-122 (302)
216 3h2y_A GTPase family protein; 98.8 2.6E-09 8.8E-14 74.9 3.8 110 3-122 161-285 (368)
217 3cnl_A YLQF, putative uncharac 98.7 2.8E-09 9.7E-14 71.4 1.7 57 3-65 100-156 (262)
218 1tq4_A IIGP1, interferon-induc 98.7 1.3E-07 4.4E-12 67.2 9.2 110 4-121 71-186 (413)
219 2j37_W Signal recognition part 98.7 6.5E-08 2.2E-12 70.3 7.2 113 3-123 102-253 (504)
220 1puj_A YLQF, conserved hypothe 98.7 2.2E-08 7.4E-13 67.8 4.3 56 3-64 121-176 (282)
221 1bif_A 6-phosphofructo-2-kinas 98.5 5.2E-08 1.8E-12 70.3 3.3 100 2-105 39-148 (469)
222 1f5n_A Interferon-induced guan 98.4 5.9E-07 2E-11 66.4 6.6 59 3-64 39-102 (592)
223 3szr_A Interferon-induced GTP- 98.3 3.8E-06 1.3E-10 62.5 8.6 25 4-28 47-71 (608)
224 1ye8_A Protein THEP1, hypothet 98.1 1.3E-06 4.5E-11 55.2 3.1 24 3-26 1-24 (178)
225 2v3c_C SRP54, signal recogniti 98.1 7.9E-06 2.7E-10 58.4 6.8 64 51-122 179-250 (432)
226 3dm5_A SRP54, signal recogniti 98.1 1.2E-05 4.2E-10 57.5 7.7 113 3-122 101-251 (443)
227 3kl4_A SRP54, signal recogniti 98.1 6.4E-06 2.2E-10 58.8 5.5 64 52-122 179-250 (433)
228 1kgd_A CASK, peripheral plasma 98.0 2.9E-06 9.8E-11 53.5 2.9 23 4-26 7-29 (180)
229 1lvg_A Guanylate kinase, GMP k 98.0 3E-06 1E-10 54.3 2.9 22 4-25 6-27 (198)
230 3a00_A Guanylate kinase, GMP k 98.0 4.3E-06 1.5E-10 53.0 2.9 22 5-26 4-25 (186)
231 1znw_A Guanylate kinase, GMP k 98.0 4.5E-06 1.5E-10 53.7 2.9 22 5-26 23-44 (207)
232 3tr0_A Guanylate kinase, GMP k 97.9 4.7E-06 1.6E-10 53.2 2.9 22 4-25 9-30 (205)
233 3tif_A Uncharacterized ABC tra 97.9 6.5E-06 2.2E-10 54.2 3.6 25 4-28 33-57 (235)
234 1s96_A Guanylate kinase, GMP k 97.9 5E-06 1.7E-10 54.2 2.9 24 4-27 18-41 (219)
235 4gp7_A Metallophosphoesterase; 97.9 6.1E-06 2.1E-10 51.6 3.0 19 5-23 12-30 (171)
236 1zp6_A Hypothetical protein AT 97.9 6.1E-06 2.1E-10 52.2 2.9 22 4-25 11-32 (191)
237 1z6g_A Guanylate kinase; struc 97.9 6.1E-06 2.1E-10 53.7 2.9 23 4-26 25-47 (218)
238 1ly1_A Polynucleotide kinase; 97.9 9.8E-06 3.4E-10 50.6 3.7 24 1-24 1-24 (181)
239 2pcj_A ABC transporter, lipopr 97.9 8.3E-06 2.9E-10 53.3 3.4 24 4-27 32-55 (224)
240 2onk_A Molybdate/tungstate ABC 97.9 1E-05 3.6E-10 53.4 3.7 23 5-27 27-49 (240)
241 3h2y_A GTPase family protein; 97.9 4.7E-06 1.6E-10 58.4 2.0 54 62-122 55-108 (368)
242 1kag_A SKI, shikimate kinase I 97.9 6.9E-06 2.4E-10 51.1 2.6 23 3-25 5-27 (173)
243 1b0u_A Histidine permease; ABC 97.9 1.1E-05 3.7E-10 54.0 3.7 24 4-27 34-57 (262)
244 1sgw_A Putative ABC transporte 97.9 1.1E-05 3.9E-10 52.4 3.7 23 5-27 38-60 (214)
245 4g1u_C Hemin import ATP-bindin 97.9 1.2E-05 4.2E-10 53.9 3.9 25 4-28 39-63 (266)
246 1htw_A HI0065; nucleotide-bind 97.9 8.4E-06 2.9E-10 50.5 2.9 23 4-26 35-57 (158)
247 3ney_A 55 kDa erythrocyte memb 97.9 8.5E-06 2.9E-10 52.3 2.9 23 4-26 21-43 (197)
248 3gfo_A Cobalt import ATP-bindi 97.9 1.1E-05 3.9E-10 54.3 3.7 25 4-28 36-60 (275)
249 1g6h_A High-affinity branched- 97.8 1.2E-05 4.1E-10 53.7 3.6 25 4-28 35-59 (257)
250 1ex7_A Guanylate kinase; subst 97.8 1E-05 3.5E-10 51.5 3.1 21 5-25 4-24 (186)
251 3c8u_A Fructokinase; YP_612366 97.8 9.5E-06 3.2E-10 52.3 3.0 23 3-25 23-45 (208)
252 1mv5_A LMRA, multidrug resista 97.8 1.6E-05 5.3E-10 52.6 4.0 25 4-28 30-54 (243)
253 3tau_A Guanylate kinase, GMP k 97.8 9.5E-06 3.2E-10 52.3 2.9 22 5-26 11-32 (208)
254 2olj_A Amino acid ABC transpor 97.8 1.3E-05 4.5E-10 53.7 3.7 24 4-27 52-75 (263)
255 1ji0_A ABC transporter; ATP bi 97.8 1.3E-05 4.6E-10 52.9 3.6 24 4-27 34-57 (240)
256 2pze_A Cystic fibrosis transme 97.8 1.4E-05 4.8E-10 52.4 3.7 24 4-27 36-59 (229)
257 1vpl_A ABC transporter, ATP-bi 97.8 1.4E-05 4.7E-10 53.3 3.7 24 4-27 43-66 (256)
258 2ff7_A Alpha-hemolysin translo 97.8 1.6E-05 5.4E-10 52.8 3.9 25 4-28 37-61 (247)
259 2qi9_C Vitamin B12 import ATP- 97.8 1.5E-05 5.2E-10 52.9 3.7 24 4-27 28-51 (249)
260 2cbz_A Multidrug resistance-as 97.8 1.2E-05 4.1E-10 53.0 3.0 24 4-27 33-56 (237)
261 2bdt_A BH3686; alpha-beta prot 97.8 1.7E-05 5.8E-10 50.1 3.7 23 2-24 2-24 (189)
262 3q5d_A Atlastin-1; G protein, 97.8 4.8E-05 1.6E-09 54.6 6.3 21 5-25 70-90 (447)
263 2ihy_A ABC transporter, ATP-bi 97.8 1.8E-05 6.3E-10 53.4 3.9 25 4-28 49-73 (279)
264 2ixe_A Antigen peptide transpo 97.8 1.7E-05 5.8E-10 53.3 3.6 25 4-28 47-71 (271)
265 1jjv_A Dephospho-COA kinase; P 97.8 1.9E-05 6.5E-10 50.6 3.7 24 1-24 1-24 (206)
266 1j8m_F SRP54, signal recogniti 97.8 0.00012 4.2E-09 49.8 7.8 64 51-122 179-251 (297)
267 2nq2_C Hypothetical ABC transp 97.8 1.8E-05 6.3E-10 52.6 3.6 24 4-27 33-56 (253)
268 2yz2_A Putative ABC transporte 97.8 1.9E-05 6.4E-10 52.9 3.6 24 4-27 35-58 (266)
269 2d2e_A SUFC protein; ABC-ATPas 97.8 1.5E-05 5.3E-10 52.9 3.1 22 4-25 31-52 (250)
270 3b85_A Phosphate starvation-in 97.8 1.2E-05 4E-10 52.1 2.5 22 4-25 24-45 (208)
271 2zu0_C Probable ATP-dependent 97.8 1.6E-05 5.5E-10 53.3 3.2 22 4-25 48-69 (267)
272 3ec1_A YQEH GTPase; atnos1, at 97.8 7.5E-06 2.6E-10 57.4 1.6 54 62-122 57-110 (369)
273 2ghi_A Transport protein; mult 97.8 1.6E-05 5.5E-10 53.1 3.0 24 4-27 48-71 (260)
274 2j41_A Guanylate kinase; GMP, 97.7 1.6E-05 5.5E-10 50.8 2.9 23 4-26 8-30 (207)
275 2bbw_A Adenylate kinase 4, AK4 97.7 2E-05 6.9E-10 52.0 3.4 20 4-23 29-48 (246)
276 2rcn_A Probable GTPase ENGC; Y 97.7 2.6E-05 8.7E-10 54.5 3.9 24 4-27 217-240 (358)
277 2i3b_A HCR-ntpase, human cance 97.7 1.5E-05 5.3E-10 50.8 2.6 22 4-25 3-24 (189)
278 2qor_A Guanylate kinase; phosp 97.7 1.9E-05 6.6E-10 50.6 3.1 23 4-26 14-36 (204)
279 4eun_A Thermoresistant glucoki 97.7 1.8E-05 6.2E-10 50.6 2.9 21 4-24 31-51 (200)
280 2eyu_A Twitching motility prot 97.7 1.7E-05 5.9E-10 53.0 2.9 23 4-26 27-49 (261)
281 3fvq_A Fe(3+) IONS import ATP- 97.7 2.2E-05 7.6E-10 54.8 3.5 24 5-28 33-56 (359)
282 1u0l_A Probable GTPase ENGC; p 97.7 2.4E-05 8.2E-10 53.3 3.6 25 4-28 171-195 (301)
283 2pjz_A Hypothetical protein ST 97.7 2.9E-05 9.8E-10 52.0 3.9 23 4-26 32-54 (263)
284 3lw7_A Adenylate kinase relate 97.7 2.2E-05 7.6E-10 48.5 3.1 20 3-22 2-21 (179)
285 3asz_A Uridine kinase; cytidin 97.7 1.7E-05 5.8E-10 51.0 2.6 22 4-25 8-29 (211)
286 1z47_A CYSA, putative ABC-tran 97.7 2.9E-05 9.8E-10 54.2 3.8 24 5-28 44-67 (355)
287 3fb4_A Adenylate kinase; psych 97.7 2.5E-05 8.6E-10 50.3 3.2 22 3-24 1-22 (216)
288 1cke_A CK, MSSA, protein (cyti 97.7 2.6E-05 8.8E-10 50.6 3.2 23 3-25 6-28 (227)
289 3rlf_A Maltose/maltodextrin im 97.7 3.3E-05 1.1E-09 54.3 3.8 24 5-28 32-55 (381)
290 2it1_A 362AA long hypothetical 97.7 3.3E-05 1.1E-09 54.0 3.8 24 5-28 32-55 (362)
291 2yyz_A Sugar ABC transporter, 97.7 3.3E-05 1.1E-09 54.0 3.8 24 5-28 32-55 (359)
292 3dl0_A Adenylate kinase; phosp 97.7 2.7E-05 9.2E-10 50.2 3.2 22 3-24 1-22 (216)
293 3kb2_A SPBC2 prophage-derived 97.7 3E-05 1E-09 48.0 3.2 22 4-25 3-24 (173)
294 2v9p_A Replication protein E1; 97.7 2.6E-05 8.8E-10 53.3 3.1 22 4-25 128-149 (305)
295 2ehv_A Hypothetical protein PH 97.7 2.7E-05 9.2E-10 51.1 3.1 19 5-23 33-51 (251)
296 3sr0_A Adenylate kinase; phosp 97.7 3E-05 1E-09 50.1 3.2 23 3-25 1-23 (206)
297 1puj_A YLQF, conserved hypothe 97.7 4.3E-05 1.5E-09 51.7 4.0 57 57-122 3-62 (282)
298 1v43_A Sugar-binding transport 97.7 3.8E-05 1.3E-09 53.9 3.8 24 5-28 40-63 (372)
299 1g29_1 MALK, maltose transport 97.7 3.7E-05 1.3E-09 54.0 3.8 23 5-27 32-54 (372)
300 3tui_C Methionine import ATP-b 97.7 3.7E-05 1.3E-09 53.8 3.7 24 5-28 57-80 (366)
301 3lnc_A Guanylate kinase, GMP k 97.7 1.6E-05 5.4E-10 52.0 1.8 22 4-25 29-51 (231)
302 3ec2_A DNA replication protein 97.6 2.2E-05 7.6E-10 49.2 2.4 23 4-26 40-62 (180)
303 3uie_A Adenylyl-sulfate kinase 97.6 2.9E-05 9.8E-10 49.6 2.9 22 4-25 27-48 (200)
304 1qhx_A CPT, protein (chloramph 97.6 3.8E-05 1.3E-09 47.9 3.4 23 3-25 4-26 (178)
305 1knq_A Gluconate kinase; ALFA/ 97.6 3E-05 1E-09 48.4 2.9 21 4-24 10-30 (175)
306 2yv5_A YJEQ protein; hydrolase 97.6 4.4E-05 1.5E-09 52.1 3.9 23 4-27 167-189 (302)
307 3vaa_A Shikimate kinase, SK; s 97.6 3.6E-05 1.2E-09 49.2 3.2 21 4-24 27-47 (199)
308 4a74_A DNA repair and recombin 97.6 2.7E-05 9.1E-10 50.5 2.6 21 5-25 28-48 (231)
309 3nh6_A ATP-binding cassette SU 97.6 2.8E-05 9.6E-10 53.2 2.8 24 4-27 82-105 (306)
310 2bbs_A Cystic fibrosis transme 97.6 3.2E-05 1.1E-09 52.5 3.1 24 4-27 66-89 (290)
311 1lw7_A Transcriptional regulat 97.6 3.1E-05 1.1E-09 54.1 3.0 26 2-27 170-195 (365)
312 3aez_A Pantothenate kinase; tr 97.6 3.1E-05 1E-09 53.1 2.9 22 4-25 92-113 (312)
313 2if2_A Dephospho-COA kinase; a 97.6 3.1E-05 1.1E-09 49.4 2.8 22 3-24 2-23 (204)
314 3d31_A Sulfate/molybdate ABC t 97.6 2.9E-05 9.8E-10 54.0 2.7 24 5-28 29-52 (348)
315 3t61_A Gluconokinase; PSI-biol 97.6 3.5E-05 1.2E-09 49.2 2.9 22 4-25 20-41 (202)
316 2jaq_A Deoxyguanosine kinase; 97.6 4.2E-05 1.4E-09 48.6 3.0 21 4-24 2-22 (205)
317 2chg_A Replication factor C sm 97.6 0.00012 4E-09 46.8 5.1 21 5-25 41-61 (226)
318 1t9h_A YLOQ, probable GTPase E 97.6 1.1E-05 3.7E-10 55.3 0.1 20 5-24 176-195 (307)
319 3jvv_A Twitching mobility prot 97.6 4.1E-05 1.4E-09 53.4 2.9 23 4-26 125-147 (356)
320 1np6_A Molybdopterin-guanine d 97.6 4.7E-05 1.6E-09 47.9 2.9 22 4-25 8-29 (174)
321 2iyv_A Shikimate kinase, SK; t 97.6 3.6E-05 1.2E-09 48.4 2.4 24 1-24 1-24 (184)
322 2jeo_A Uridine-cytidine kinase 97.5 4.5E-05 1.5E-09 50.3 2.9 21 4-24 27-47 (245)
323 3cm0_A Adenylate kinase; ATP-b 97.5 6.5E-05 2.2E-09 47.2 3.5 23 2-24 4-26 (186)
324 1nks_A Adenylate kinase; therm 97.5 5.6E-05 1.9E-09 47.6 3.3 21 4-24 3-23 (194)
325 1e4v_A Adenylate kinase; trans 97.5 4.6E-05 1.6E-09 49.1 2.9 22 3-24 1-22 (214)
326 2x8a_A Nuclear valosin-contain 97.5 4.6E-05 1.6E-09 51.2 2.9 21 5-25 47-67 (274)
327 1oxx_K GLCV, glucose, ABC tran 97.5 3E-05 1E-09 54.1 2.0 23 5-27 34-56 (353)
328 2pt7_A CAG-ALFA; ATPase, prote 97.5 6.2E-05 2.1E-09 52.0 3.5 24 4-27 173-196 (330)
329 3trf_A Shikimate kinase, SK; a 97.5 6.5E-05 2.2E-09 47.2 3.3 22 3-24 6-27 (185)
330 1rj9_A FTSY, signal recognitio 97.5 5E-05 1.7E-09 51.9 2.9 22 4-25 104-125 (304)
331 1kht_A Adenylate kinase; phosp 97.5 6.3E-05 2.1E-09 47.3 3.2 22 3-24 4-25 (192)
332 3b9q_A Chloroplast SRP recepto 97.5 5.5E-05 1.9E-09 51.6 2.9 22 4-25 102-123 (302)
333 2gza_A Type IV secretion syste 97.5 7E-05 2.4E-09 52.3 3.5 24 4-27 177-200 (361)
334 2kjq_A DNAA-related protein; s 97.5 4.2E-05 1.5E-09 46.8 2.1 23 4-26 38-60 (149)
335 3gd7_A Fusion complex of cysti 97.5 5.2E-05 1.8E-09 53.5 2.8 23 4-26 49-71 (390)
336 2rhm_A Putative kinase; P-loop 97.5 7.6E-05 2.6E-09 47.1 3.4 22 3-24 6-27 (193)
337 1ixz_A ATP-dependent metallopr 97.5 5.9E-05 2E-09 49.8 2.9 22 4-25 51-72 (254)
338 3tlx_A Adenylate kinase 2; str 97.5 8.9E-05 3E-09 48.9 3.6 22 3-24 30-51 (243)
339 2cdn_A Adenylate kinase; phosp 97.5 8.4E-05 2.9E-09 47.4 3.3 23 2-24 20-42 (201)
340 2pt5_A Shikimate kinase, SK; a 97.5 8.6E-05 3E-09 45.8 3.2 22 3-24 1-22 (168)
341 1via_A Shikimate kinase; struc 97.5 6.8E-05 2.3E-09 46.8 2.7 22 4-25 6-27 (175)
342 2f1r_A Molybdopterin-guanine d 97.5 2.8E-05 9.5E-10 48.8 0.9 23 4-26 4-26 (171)
343 1qf9_A UMP/CMP kinase, protein 97.5 9.1E-05 3.1E-09 46.6 3.4 23 2-24 6-28 (194)
344 2ewv_A Twitching motility prot 97.5 7.1E-05 2.4E-09 52.5 3.1 22 4-25 138-159 (372)
345 1sxj_E Activator 1 40 kDa subu 97.5 0.0011 3.8E-08 45.6 9.1 21 5-25 39-59 (354)
346 3e70_C DPA, signal recognition 97.5 7E-05 2.4E-09 51.7 2.9 22 4-25 131-152 (328)
347 1aky_A Adenylate kinase; ATP:A 97.5 8.5E-05 2.9E-09 48.1 3.2 22 3-24 5-26 (220)
348 2xb4_A Adenylate kinase; ATP-b 97.4 8.6E-05 2.9E-09 48.3 3.2 22 3-24 1-22 (223)
349 2plr_A DTMP kinase, probable t 97.4 0.00011 3.6E-09 47.0 3.6 23 3-25 5-27 (213)
350 3n70_A Transport activator; si 97.4 0.00092 3.2E-08 40.4 7.6 23 4-26 26-48 (145)
351 1p9r_A General secretion pathw 97.4 7E-05 2.4E-09 53.3 2.9 24 4-27 169-192 (418)
352 1ltq_A Polynucleotide kinase; 97.4 0.00011 3.8E-09 49.7 3.7 24 1-24 1-24 (301)
353 1e6c_A Shikimate kinase; phosp 97.4 8.2E-05 2.8E-09 46.1 2.8 22 3-24 3-24 (173)
354 1gvn_B Zeta; postsegregational 97.4 8E-05 2.8E-09 50.4 2.9 23 3-25 34-56 (287)
355 3kta_A Chromosome segregation 97.4 8.3E-05 2.8E-09 46.6 2.8 21 5-25 29-49 (182)
356 1tev_A UMP-CMP kinase; ploop, 97.4 0.00012 4.1E-09 46.1 3.6 22 3-24 4-25 (196)
357 1y63_A LMAJ004144AAA protein; 97.4 0.00011 3.6E-09 46.4 3.3 23 3-25 11-33 (184)
358 1in4_A RUVB, holliday junction 97.4 8.2E-05 2.8E-09 51.3 2.9 22 4-25 53-74 (334)
359 1sq5_A Pantothenate kinase; P- 97.4 7.4E-05 2.5E-09 51.0 2.7 23 3-25 81-103 (308)
360 4e22_A Cytidylate kinase; P-lo 97.4 0.00011 3.7E-09 48.8 3.3 21 3-23 28-48 (252)
361 1yqt_A RNAse L inhibitor; ATP- 97.4 0.00014 4.8E-09 53.4 4.2 25 4-28 49-73 (538)
362 2ze6_A Isopentenyl transferase 97.4 8.8E-05 3E-09 49.3 2.9 21 4-24 3-23 (253)
363 1jbk_A CLPB protein; beta barr 97.4 0.0001 3.6E-09 45.9 3.2 22 4-25 45-66 (195)
364 2qt1_A Nicotinamide riboside k 97.4 0.00011 3.7E-09 47.1 3.3 23 3-25 22-44 (207)
365 1zd8_A GTP:AMP phosphotransfer 97.4 9.1E-05 3.1E-09 48.2 2.9 22 3-24 8-29 (227)
366 2vp4_A Deoxynucleoside kinase; 97.4 7.1E-05 2.4E-09 48.9 2.4 22 4-25 22-43 (230)
367 1iy2_A ATP-dependent metallopr 97.4 9E-05 3.1E-09 49.7 2.9 23 4-26 75-97 (278)
368 2oap_1 GSPE-2, type II secreti 97.4 0.00011 3.8E-09 53.6 3.5 24 4-27 262-285 (511)
369 3ozx_A RNAse L inhibitor; ATP 97.4 0.00014 4.8E-09 53.4 3.9 24 5-28 28-51 (538)
370 3iij_A Coilin-interacting nucl 97.4 0.00012 4E-09 45.9 3.1 21 4-24 13-33 (180)
371 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.0001 3.5E-09 47.7 2.9 21 5-25 26-46 (235)
372 2og2_A Putative signal recogni 97.4 9.7E-05 3.3E-09 51.6 2.9 22 4-25 159-180 (359)
373 3tqc_A Pantothenate kinase; bi 97.4 0.0001 3.6E-09 50.7 2.9 23 3-25 93-115 (321)
374 2v54_A DTMP kinase, thymidylat 97.4 0.00013 4.4E-09 46.4 3.2 23 3-25 5-27 (204)
375 1rz3_A Hypothetical protein rb 97.4 9.9E-05 3.4E-09 47.2 2.7 22 3-24 23-44 (201)
376 2npi_A Protein CLP1; CLP1-PCF1 97.4 8.9E-05 3E-09 53.4 2.6 23 4-26 140-162 (460)
377 2obl_A ESCN; ATPase, hydrolase 97.4 0.00012 4E-09 51.0 3.1 24 4-27 73-96 (347)
378 3j16_B RLI1P; ribosome recycli 97.3 0.00017 5.7E-09 53.8 4.0 25 4-28 105-129 (608)
379 3be4_A Adenylate kinase; malar 97.3 0.00012 4.3E-09 47.3 2.9 22 3-24 6-27 (217)
380 2z0h_A DTMP kinase, thymidylat 97.3 0.00015 5E-09 45.9 3.2 22 4-25 2-23 (197)
381 1zak_A Adenylate kinase; ATP:A 97.3 0.00012 4E-09 47.4 2.8 22 3-24 6-27 (222)
382 2pbr_A DTMP kinase, thymidylat 97.3 0.00015 5E-09 45.7 3.1 21 4-24 2-22 (195)
383 2bwj_A Adenylate kinase 5; pho 97.3 9.7E-05 3.3E-09 46.8 2.3 23 3-25 13-35 (199)
384 2yhs_A FTSY, cell division pro 97.3 0.00012 4E-09 53.2 2.9 22 4-25 295-316 (503)
385 2c95_A Adenylate kinase 1; tra 97.3 0.00015 5E-09 45.8 3.1 22 3-24 10-31 (196)
386 3umf_A Adenylate kinase; rossm 97.3 0.00015 5.1E-09 47.2 3.1 21 5-25 32-52 (217)
387 1ukz_A Uridylate kinase; trans 97.3 0.00019 6.4E-09 45.8 3.5 22 3-24 16-37 (203)
388 1xjc_A MOBB protein homolog; s 97.3 0.00016 5.6E-09 45.2 3.1 22 4-25 6-27 (169)
389 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00017 5.7E-09 44.1 3.1 19 5-23 26-44 (149)
390 2yvu_A Probable adenylyl-sulfa 97.3 0.00019 6.5E-09 45.2 3.4 23 3-25 14-36 (186)
391 1lv7_A FTSH; alpha/beta domain 97.3 0.00014 4.9E-09 48.1 2.9 22 4-25 47-68 (257)
392 3co5_A Putative two-component 97.3 0.00082 2.8E-08 40.6 6.1 22 4-25 29-50 (143)
393 1gtv_A TMK, thymidylate kinase 97.3 5E-05 1.7E-09 48.7 0.6 22 4-25 2-23 (214)
394 3b5x_A Lipid A export ATP-bind 97.3 0.0002 6.9E-09 53.0 3.9 25 4-28 371-395 (582)
395 3bk7_A ABC transporter ATP-bin 97.3 0.00023 7.8E-09 53.0 4.2 25 4-28 119-143 (607)
396 1nij_A Hypothetical protein YJ 97.3 0.0001 3.6E-09 50.5 2.2 22 5-26 7-28 (318)
397 2pez_A Bifunctional 3'-phospho 97.3 0.00016 5.6E-09 45.2 2.9 23 3-25 6-28 (179)
398 1ak2_A Adenylate kinase isoenz 97.3 0.00018 6.2E-09 47.0 3.2 23 3-25 17-39 (233)
399 2p65_A Hypothetical protein PF 97.3 0.00012 4.2E-09 45.5 2.4 22 4-25 45-66 (187)
400 3b60_A Lipid A export ATP-bind 97.3 0.00019 6.6E-09 53.1 3.7 24 4-27 371-394 (582)
401 1cr0_A DNA primase/helicase; R 97.3 0.00013 4.6E-09 49.3 2.6 22 5-26 38-59 (296)
402 3bos_A Putative DNA replicatio 97.3 0.00018 6.2E-09 46.6 3.1 22 4-25 54-75 (242)
403 3euj_A Chromosome partition pr 97.3 0.00014 4.9E-09 52.6 2.8 23 5-27 32-54 (483)
404 2wwf_A Thymidilate kinase, put 97.3 0.00017 5.7E-09 46.2 2.9 22 3-24 11-32 (212)
405 1odf_A YGR205W, hypothetical 3 97.2 0.00021 7.2E-09 48.5 3.4 22 3-24 32-53 (290)
406 2dpy_A FLII, flagellum-specifi 97.2 0.00017 5.9E-09 51.7 3.1 24 4-27 159-182 (438)
407 2p5t_B PEZT; postsegregational 97.2 0.00014 4.6E-09 48.3 2.4 23 3-25 33-55 (253)
408 1vht_A Dephospho-COA kinase; s 97.2 0.00025 8.4E-09 45.8 3.5 23 2-24 4-26 (218)
409 3ozx_A RNAse L inhibitor; ATP 97.2 0.00024 8.1E-09 52.2 3.8 25 4-28 296-320 (538)
410 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00024 8.3E-09 47.3 3.6 22 3-24 5-26 (260)
411 3bk7_A ABC transporter ATP-bin 97.2 0.00024 8.3E-09 52.9 3.9 25 4-28 384-408 (607)
412 3ake_A Cytidylate kinase; CMP 97.2 0.0002 6.8E-09 45.6 3.0 24 1-24 1-24 (208)
413 1nn5_A Similar to deoxythymidy 97.2 0.00019 6.4E-09 46.0 2.9 22 3-24 10-31 (215)
414 1n0w_A DNA repair protein RAD5 97.2 0.00019 6.5E-09 46.8 2.9 21 5-25 27-47 (243)
415 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00028 9.7E-09 51.8 4.1 25 4-28 314-338 (538)
416 1uf9_A TT1252 protein; P-loop, 97.2 0.00023 7.9E-09 45.1 3.3 23 3-25 9-31 (203)
417 2yl4_A ATP-binding cassette SU 97.2 0.00021 7.1E-09 53.1 3.4 24 4-27 372-395 (595)
418 2cvh_A DNA repair and recombin 97.2 0.0002 6.9E-09 46.0 2.9 20 5-24 23-42 (220)
419 3crm_A TRNA delta(2)-isopenten 97.2 0.00029 9.8E-09 48.5 3.7 25 1-25 4-28 (323)
420 3r20_A Cytidylate kinase; stru 97.2 0.00024 8.3E-09 46.7 3.2 22 3-24 10-31 (233)
421 1zuh_A Shikimate kinase; alpha 97.2 0.00028 9.5E-09 43.6 3.4 21 4-24 9-29 (168)
422 2w58_A DNAI, primosome compone 97.2 0.00024 8.3E-09 45.2 3.1 24 3-26 55-78 (202)
423 2vli_A Antibiotic resistance p 97.2 0.00015 5.1E-09 45.3 2.1 21 4-24 7-27 (183)
424 3qf4_B Uncharacterized ABC tra 97.2 0.00025 8.5E-09 52.7 3.5 25 4-28 383-407 (598)
425 3nwj_A ATSK2; P loop, shikimat 97.2 0.00018 6.3E-09 47.7 2.5 21 4-24 50-70 (250)
426 4eaq_A DTMP kinase, thymidylat 97.2 0.00023 7.8E-09 46.6 2.9 23 3-25 27-49 (229)
427 3qf7_A RAD50; ABC-ATPase, ATPa 97.2 0.00024 8.2E-09 49.7 3.1 19 5-23 26-44 (365)
428 1m7g_A Adenylylsulfate kinase; 97.2 0.00025 8.5E-09 45.6 2.9 23 3-25 26-48 (211)
429 3j16_B RLI1P; ribosome recycli 97.2 0.00034 1.2E-08 52.1 3.9 24 5-28 381-404 (608)
430 1zcb_A G alpha I/13; GTP-bindi 97.2 0.0003 1E-08 49.2 3.4 22 2-23 33-54 (362)
431 4a82_A Cystic fibrosis transme 97.1 0.0002 7E-09 52.9 2.7 25 4-28 369-393 (578)
432 1svm_A Large T antigen; AAA+ f 97.1 0.00025 8.6E-09 49.8 2.9 21 4-24 171-191 (377)
433 3d3q_A TRNA delta(2)-isopenten 97.1 0.00037 1.3E-08 48.3 3.7 24 2-25 7-30 (340)
434 3b9p_A CG5977-PA, isoform A; A 97.1 0.00026 8.7E-09 47.8 2.8 22 4-25 56-77 (297)
435 1njg_A DNA polymerase III subu 97.1 0.00027 9.3E-09 45.6 2.9 22 4-25 47-68 (250)
436 3h4m_A Proteasome-activating n 97.1 0.00028 9.5E-09 47.3 2.9 22 4-25 53-74 (285)
437 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.00031 1.1E-08 46.3 3.0 22 4-25 41-62 (262)
438 3qf4_A ABC transporter, ATP-bi 97.1 0.0003 1E-08 52.1 3.2 25 4-28 371-395 (587)
439 3cf0_A Transitional endoplasmi 97.1 0.00031 1.1E-08 47.7 2.8 22 4-25 51-72 (301)
440 1nlf_A Regulatory protein REPA 97.0 0.0003 1E-08 47.2 2.6 20 5-24 33-52 (279)
441 3t15_A Ribulose bisphosphate c 97.0 0.00031 1E-08 47.6 2.6 22 4-25 38-59 (293)
442 1uj2_A Uridine-cytidine kinase 97.0 0.00049 1.7E-08 45.5 3.5 22 3-24 23-44 (252)
443 1l8q_A Chromosomal replication 97.0 0.00035 1.2E-08 47.8 2.8 22 4-25 39-60 (324)
444 2grj_A Dephospho-COA kinase; T 97.0 0.0006 2E-08 43.5 3.5 23 3-25 13-35 (192)
445 2f6r_A COA synthase, bifunctio 97.0 0.0005 1.7E-08 46.3 3.3 22 3-24 76-97 (281)
446 4dzz_A Plasmid partitioning pr 97.0 0.0068 2.3E-07 38.3 8.5 67 52-122 75-142 (206)
447 2qmh_A HPR kinase/phosphorylas 97.0 0.00052 1.8E-08 44.1 3.1 24 3-26 35-58 (205)
448 3syl_A Protein CBBX; photosynt 97.0 0.00044 1.5E-08 46.8 2.9 22 4-25 69-90 (309)
449 3qks_A DNA double-strand break 97.0 0.00052 1.8E-08 44.0 3.1 19 5-23 26-44 (203)
450 2px0_A Flagellar biosynthesis 97.0 0.00039 1.3E-08 47.3 2.6 21 4-24 107-127 (296)
451 2iw3_A Elongation factor 3A; a 97.0 0.00049 1.7E-08 53.8 3.3 24 4-27 463-486 (986)
452 1tue_A Replication protein E1; 97.0 0.00034 1.2E-08 45.2 2.1 22 4-25 60-81 (212)
453 2qby_A CDC6 homolog 1, cell di 97.0 0.0004 1.4E-08 48.1 2.7 22 4-25 47-68 (386)
454 2iw3_A Elongation factor 3A; a 97.0 0.00036 1.2E-08 54.5 2.6 24 4-27 701-724 (986)
455 1ofh_A ATP-dependent HSL prote 97.0 0.00049 1.7E-08 46.4 2.9 22 4-25 52-73 (310)
456 1sxj_C Activator 1 40 kDa subu 96.9 0.00046 1.6E-08 47.5 2.8 22 5-26 49-70 (340)
457 1vma_A Cell division protein F 96.9 0.0005 1.7E-08 47.0 2.9 22 4-25 106-127 (306)
458 4fcw_A Chaperone protein CLPB; 96.9 0.00049 1.7E-08 46.5 2.9 23 4-26 49-71 (311)
459 1fnn_A CDC6P, cell division co 96.9 0.00049 1.7E-08 47.9 2.9 23 4-26 46-68 (389)
460 1d2n_A N-ethylmaleimide-sensit 96.9 0.00056 1.9E-08 45.6 3.1 23 3-25 65-87 (272)
461 2xtz_A Guanine nucleotide-bind 96.9 0.00069 2.4E-08 47.2 3.6 22 2-23 9-30 (354)
462 4b4t_K 26S protease regulatory 96.9 0.0005 1.7E-08 49.1 2.9 21 5-25 209-229 (428)
463 2dr3_A UPF0273 protein PH0284; 96.9 0.00053 1.8E-08 44.7 2.8 20 5-24 26-45 (247)
464 4ido_A Atlastin-1; GTPase, GTP 96.9 0.0022 7.6E-08 46.1 6.1 60 5-64 70-151 (457)
465 3zvl_A Bifunctional polynucleo 96.9 0.00059 2E-08 48.5 3.1 22 4-25 260-281 (416)
466 4b4t_M 26S protease regulatory 96.9 0.00056 1.9E-08 48.9 3.0 22 4-25 217-238 (434)
467 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.00055 1.9E-08 47.0 2.8 22 4-25 47-68 (322)
468 1q3t_A Cytidylate kinase; nucl 96.9 0.00063 2.2E-08 44.5 3.0 22 3-24 17-38 (236)
469 3a8t_A Adenylate isopentenyltr 96.9 0.0007 2.4E-08 46.9 3.2 22 4-25 42-63 (339)
470 3exa_A TRNA delta(2)-isopenten 96.9 0.00068 2.3E-08 46.5 3.1 22 4-25 5-26 (322)
471 4b4t_L 26S protease subunit RP 96.9 0.00062 2.1E-08 48.8 3.0 22 4-25 217-238 (437)
472 3pxg_A Negative regulator of g 96.9 0.00064 2.2E-08 49.1 3.0 22 4-25 203-224 (468)
473 1pzn_A RAD51, DNA repair and r 96.8 0.00056 1.9E-08 47.6 2.6 22 5-26 134-155 (349)
474 3foz_A TRNA delta(2)-isopenten 96.8 0.001 3.5E-08 45.6 3.7 22 4-25 12-33 (316)
475 1sxj_D Activator 1 41 kDa subu 96.8 0.00067 2.3E-08 46.6 2.9 21 5-25 61-81 (353)
476 3m6a_A ATP-dependent protease 96.8 0.00064 2.2E-08 50.0 2.9 23 4-26 110-132 (543)
477 3eie_A Vacuolar protein sortin 96.8 0.00076 2.6E-08 46.2 3.1 22 4-25 53-74 (322)
478 3qkt_A DNA double-strand break 96.8 0.00078 2.7E-08 46.5 3.1 19 5-23 26-44 (339)
479 3gmt_A Adenylate kinase; ssgci 96.8 0.0009 3.1E-08 43.9 3.2 22 3-24 9-30 (230)
480 4b4t_J 26S protease regulatory 96.8 0.00073 2.5E-08 47.9 2.9 22 4-25 184-205 (405)
481 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00095 3.3E-08 46.5 3.4 22 3-24 25-46 (359)
482 2v1u_A Cell division control p 96.8 0.00063 2.1E-08 47.2 2.5 22 4-25 46-67 (387)
483 2r62_A Cell division protease 96.8 0.0003 1E-08 46.7 0.8 21 5-25 47-67 (268)
484 3uk6_A RUVB-like 2; hexameric 96.8 0.00069 2.3E-08 47.0 2.6 22 4-25 72-93 (368)
485 1qhl_A Protein (cell division 96.8 0.00018 6E-09 47.2 -0.4 22 6-27 31-52 (227)
486 1e69_A Chromosome segregation 96.8 0.00066 2.3E-08 46.6 2.4 20 5-24 27-46 (322)
487 1tf7_A KAIC; homohexamer, hexa 96.8 0.00073 2.5E-08 49.4 2.8 19 5-23 42-60 (525)
488 2qgz_A Helicase loader, putati 96.8 0.00093 3.2E-08 45.6 3.1 23 3-25 153-175 (308)
489 3pfi_A Holliday junction ATP-d 96.8 0.00083 2.8E-08 46.1 2.9 22 4-25 57-78 (338)
490 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00079 2.7E-08 49.0 2.8 22 4-25 66-87 (499)
491 2qen_A Walker-type ATPase; unk 96.7 0.00089 3E-08 45.8 2.9 22 4-25 33-54 (350)
492 1c9k_A COBU, adenosylcobinamid 96.7 0.0011 3.6E-08 41.9 3.0 21 5-25 2-22 (180)
493 2o5v_A DNA replication and rep 96.7 0.00097 3.3E-08 46.6 3.1 20 5-24 29-48 (359)
494 3cr8_A Sulfate adenylyltranfer 96.7 0.00051 1.7E-08 50.6 1.7 24 3-26 370-393 (552)
495 2z4s_A Chromosomal replication 96.7 0.00085 2.9E-08 48.1 2.8 22 4-25 132-153 (440)
496 3hws_A ATP-dependent CLP prote 96.7 0.00093 3.2E-08 46.4 2.9 22 4-25 53-74 (363)
497 2qp9_X Vacuolar protein sortin 96.7 0.00091 3.1E-08 46.5 2.9 22 4-25 86-107 (355)
498 1um8_A ATP-dependent CLP prote 96.7 0.0011 3.6E-08 46.4 3.1 22 4-25 74-95 (376)
499 2bjv_A PSP operon transcriptio 96.7 0.0011 3.8E-08 43.9 3.1 23 4-26 31-53 (265)
500 2ce7_A Cell division protein F 96.7 0.00096 3.3E-08 48.3 2.9 22 4-25 51-72 (476)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.9e-35 Score=191.51 Aligned_cols=118 Identities=22% Similarity=0.368 Sum_probs=98.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+|+|++|||||||++++..+.+...+.||++.++....... ++..+.++||||+|+++|+.++..|++++++++
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~--~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL--EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC--SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe--cceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 589999999999999999999999999999999998877666543 457899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++++||+++..|+..+..... +++|++|||||+|.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl 130 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDL 130 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTC
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccch
Confidence 99999999999999999999987654 47999999999994
No 2
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=3.2e-29 Score=157.29 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=103.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++++++++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR---KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE---EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE---EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 489999999999999999999998888888888876542 22234456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccc
Confidence 99999999999999999999887655568999999999995
No 3
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=3.8e-29 Score=160.42 Aligned_cols=115 Identities=21% Similarity=0.429 Sum_probs=102.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.+|.+.++..+.. ..+.+.+||++|++.+...+..+++++|+++
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK------GNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE------TTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEe------CCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 4799999999999999999999998887888999987665433 5689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCC
Confidence 99999999999999999999877544458999999999995
No 4
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=9.5e-29 Score=155.43 Aligned_cols=118 Identities=21% Similarity=0.387 Sum_probs=104.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI--NEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE--TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 579999999999999999999999888888889887765554433 446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl 120 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDX 120 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCc
Confidence 99999999999999999999877653 47999999999994
No 5
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=4e-29 Score=163.49 Aligned_cols=116 Identities=22% Similarity=0.395 Sum_probs=102.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.+|.+..+. .....++..+.+.+||++|++++..++..+++++++++
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT---ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE---EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE---EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 589999999999999999999999998888899987652 22334457789999999999999999999999999999
Q ss_pred EEEeCCCcchHHH-HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISE-LLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+. +..|+..+.... ++.|+++|+||+|.
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl 143 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDL 143 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence 9999999999999 699999998765 38999999999995
No 6
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=5.3e-29 Score=158.77 Aligned_cols=118 Identities=17% Similarity=0.286 Sum_probs=104.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+..+ . .....++..+.+++||++|++.+...+..+++++|+++
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-L--KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-E--EEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-E--EEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 58999999999999999999999988888888888755 2 22234557788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 99999999999999999999987655568999999999994
No 7
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=5.5e-29 Score=159.67 Aligned_cols=119 Identities=25% Similarity=0.406 Sum_probs=105.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-cchHHhhccCcEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE-SVWPAFQRDVHGI 80 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~ 80 (135)
.+||+++|++|||||||++++.++.+...+.++.+.++....... ++..+.+.+||++|++.+. .++..++++++++
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI--DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE--TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE--CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 479999999999999999999999888888888887765555433 3467899999999999998 8899999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++|||++++.+|+.+..|+..+.......+.|+++|+||+|.
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 999999999999999999999988765568999999999995
No 8
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=6.4e-29 Score=158.13 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=101.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+ .... ..++..+.+.+||+||++.+...+..+++++++++
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLI--TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEE--EETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEE--EECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 47999999999999999999998888888888888765 2222 34456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999999999987766668999999999995
No 9
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=1.2e-28 Score=154.91 Aligned_cols=118 Identities=20% Similarity=0.299 Sum_probs=103.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||+++++++.+...+.++.+.++....... +...+.+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL--DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE--TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 589999999999999999999998888778888887765544433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl 123 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADL 123 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccC
Confidence 99999999999999999999877643 47999999999994
No 10
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1e-28 Score=158.66 Aligned_cols=119 Identities=27% Similarity=0.402 Sum_probs=105.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV--DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE--TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE--CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 479999999999999999999999888888888888765554433 446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.++..+..|+..+.......+.|+++|+||+|.
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 99999999999999999999987665568999999999995
No 11
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=4.7e-29 Score=156.31 Aligned_cols=113 Identities=23% Similarity=0.380 Sum_probs=98.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
+||+++|++|||||||++++.++.+.. +.||.+.....+.. ..+.+.+||+||++.++..+..+++++|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEEC------SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEE------CCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence 589999999999999999999887653 56788755443332 45789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCC
Confidence 9999999999999999999877655568999999999995
No 12
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.1e-29 Score=161.32 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=104.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++++.++....... ++..+.+.+||++|+++++..+..+++++++++
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI--NGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE--TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 479999999999999999999999888888899988776555543 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl 143 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDL 143 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence 99999999999999999999876543 47899999999994
No 13
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=6.6e-29 Score=158.75 Aligned_cols=117 Identities=27% Similarity=0.416 Sum_probs=101.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+..+. .....++..+.+.+||++|++.+...+..+++++++++
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT---ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE---EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 689999999999999999999999888888888876542 22334457789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|||++++++|+.+ ..|+..+.... ++.|+++|+||+|..
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLR 124 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhh
Confidence 99999999999999 78999887654 379999999999953
No 14
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=161.71 Aligned_cols=118 Identities=19% Similarity=0.316 Sum_probs=95.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.+|.+.++....... ++..+.+.+||++|++++...+..+++++++++
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI--QGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE--TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE--CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 479999999999999999999999887778888887665554433 346689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl 146 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQLLIGNKSDL 146 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCcc
Confidence 99999999999999999999977653 47999999999995
No 15
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=2.3e-28 Score=153.74 Aligned_cols=118 Identities=18% Similarity=0.281 Sum_probs=104.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++....+.+||+||++.+...+..+++++++++
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY--QNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE--TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE--CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 579999999999999999999999888888889888765554433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... +..|+++|+||+|.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl 123 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDL 123 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTSEEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECCcc
Confidence 99999999999999999999877533 57999999999995
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=156.17 Aligned_cols=117 Identities=23% Similarity=0.402 Sum_probs=101.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI--NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE--TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE--CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 479999999999999999999999888788888887665554433 346689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.++..+..|+..+..... +.|+++|+||+|.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl 125 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCD--DVCRILVGNKNDD 125 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCT--TSEEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEECCCC
Confidence 99999999999999999999977654 7999999999994
No 17
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=5.4e-29 Score=160.52 Aligned_cols=115 Identities=18% Similarity=0.358 Sum_probs=98.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCC-CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAE-EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
.+||+++|++|||||||+++|++..+.. .+.+|.+.....+.. ..+.+.+||++|++.+...+..+++++|++
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEK------GRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEE------TTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEe------CCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 4799999999999999999999998887 788999976555432 678999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCC-------CCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDL-------NNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~p~ivv~nK~D~ 122 (135)
++|||++++++|..+..|+..+...... .+.|+++|+||+|.
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 139 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA 139 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence 9999999999999999999988765221 27899999999995
No 18
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=1.1e-28 Score=157.69 Aligned_cols=114 Identities=22% Similarity=0.416 Sum_probs=100.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++. ...+.||.+........ ....+.+||+||++.++..+..+++++|+++
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~------~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH------RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE------TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 4799999999999999999999988 66778888866544443 4679999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+++..|+.++.+.....+.|+++|+||+|.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 99999999999999999999877654458999999999995
No 19
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=9.8e-29 Score=154.97 Aligned_cols=118 Identities=20% Similarity=0.299 Sum_probs=100.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR---KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE---EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE---EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 589999999999999999999998887777788776542 22233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++++.+..|+..+.......+.|+++|+||+|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence 99999999999999999999988766568999999999994
No 20
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-28 Score=157.24 Aligned_cols=118 Identities=17% Similarity=0.275 Sum_probs=104.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... +...+.+.+||+||++.+...+..+++.+++++
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC--GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC--SSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe--CCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 579999999999999999999999887788899988766555433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~NK~Dl 140 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKCDL 140 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence 99999999999999999999877653 47999999999995
No 21
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=3e-28 Score=154.84 Aligned_cols=118 Identities=21% Similarity=0.318 Sum_probs=104.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV--NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE--TTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE--CCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 479999999999999999999999888777888887766555433 345789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+..... ++.|+++|+||+|.
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl 129 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDL 129 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcc
Confidence 99999999999999999999987653 47999999999995
No 22
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=1.7e-28 Score=153.71 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=102.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.++.+..+ . .....++..+.+.+||+||++.+...+..+++++++++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-R--KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-E--EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-E--EEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 58999999999999999999999888877778877543 2 22234456788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+.......+.|+++|+||+|.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 99999999999999999999987765568999999999994
No 23
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=1.3e-28 Score=154.70 Aligned_cols=117 Identities=21% Similarity=0.400 Sum_probs=104.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++++++
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV--NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE--TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE--CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 589999999999999999999999888888899887776555543 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl 121 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDL 121 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence 9999999999999999999987765 47899999999994
No 24
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=1.3e-28 Score=160.27 Aligned_cols=117 Identities=27% Similarity=0.419 Sum_probs=102.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+..+. . ....++..+.+.+||++|++.+...+..+++++++++
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-A--SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-E--EEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-E--EEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 589999999999999999999999888888888877552 2 2334457789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|||++++++|+.+ ..|+..+.... .+.|+++|+||+|..
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLR 145 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhc
Confidence 99999999999999 78999887654 379999999999953
No 25
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9.2e-29 Score=158.39 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=96.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+. .+.+|.+.....+.. ..+.+.+||++|+++++..+..+++++|+++
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVI------NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEE------TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 579999999999999999999988776 667888765554444 3589999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 99999999999999999999987654458999999999995
No 26
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=1.6e-28 Score=158.12 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=102.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+.. ....++..+.+.+||++|++.+...+..+++++++++
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH---VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE---EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE---EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 4899999999999999999999999888888998876543 2334557788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+ ..|+..+.... .+.|+++|+||+|.
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence 99999999999997 78998887654 37999999999994
No 27
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=158.29 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=97.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+++++++.+...+.+|.+..+. . ....++..+.+.+||++|++.++.. ..+++++++++
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-S--EETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-E--EEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-E--EEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 589999999999999999999999988888899887552 2 2233457789999999999998875 67999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+..... ..+.|+++|+||+|.
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 139 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcch
Confidence 99999999999999999999876531 147899999999995
No 28
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=2.7e-28 Score=155.92 Aligned_cols=118 Identities=18% Similarity=0.299 Sum_probs=100.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.+..+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR---KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEE---EEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEE---EEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 589999999999999999999998887777777764332 22234457788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 121 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccC
Confidence 99999999999999999999988766678999999999995
No 29
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=1.1e-28 Score=157.98 Aligned_cols=112 Identities=18% Similarity=0.292 Sum_probs=95.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||+++++++.+...+.++.+ .+ ......++..+.+.+||++|++.++ +++++++++
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~---~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF---KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE---EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE---EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 58999999999999999999999998877777744 22 2233445577899999999998876 888999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999999999987755457999999999995
No 30
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=156.64 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=104.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE--TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE--CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 479999999999999999999999888888888887766555543 346689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl 133 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDL 133 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccc
Confidence 99999999999999999999977654 47899999999994
No 31
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=1.7e-28 Score=157.68 Aligned_cols=118 Identities=22% Similarity=0.315 Sum_probs=99.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||++|++.+...+..+++++++++
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI--DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE--TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE--CCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 589999999999999999999999888777788887665544433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl 138 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDL 138 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccc
Confidence 99999999999999999999977543 47999999999995
No 32
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=7.4e-29 Score=160.45 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=91.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+. .+.+|.+.+...+.. ..+.+.+||+||++.++..+..+++++++++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTI------AGMTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEE------TTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEE------CCEEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 479999999999999999999987764 466777765444433 2379999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|||++++++|.++..|+.++.+.....+.|+++|+||+|..
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 999999999999999999999776544589999999999953
No 33
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=159.40 Aligned_cols=118 Identities=22% Similarity=0.275 Sum_probs=98.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+ .. ....++..+.+.+||++|++.+...+..+++.+++++
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SK--IVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EE--EEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EE--EEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 57999999999999999999999998888888888655 22 2233446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 141 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 99999999999999999999987766568999999999994
No 34
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=1.8e-28 Score=155.66 Aligned_cols=118 Identities=19% Similarity=0.310 Sum_probs=103.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+..+. . ....++..+.+.+||+||++.+...+..+++.+++++
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-K--ICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-E--EEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-E--EEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 479999999999999999999999888888888887654 2 2233446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++++++..+..|+..+.+.....+.|+++|+||+|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999999999876555568999999999994
No 35
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=2.4e-28 Score=154.82 Aligned_cols=119 Identities=20% Similarity=0.321 Sum_probs=100.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.++..+..+++++++++
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV--DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE--TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE--CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 479999999999999999999999888888888888765555433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... ..+.|+++|+||+|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 128 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcc
Confidence 99999999999999999999876543 247899999999995
No 36
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=3.7e-28 Score=153.08 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=99.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+. .+.|+.+.....+.. ....+.+||+||++.++..+..+++++|+++
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTY------KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEE------TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEE------CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 479999999999999999999988764 466788765544444 3679999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|..+..|+..+.......+.|+++|+||+|.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence 99999999999999999998877654458999999999995
No 37
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=2.2e-28 Score=157.31 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=98.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+. .+.+|.+.....+.. ..+.+.+||+||++.++..+..+++++++++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAI------GNIKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEE------TTEEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEE------CCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 469999999999999999999998764 566788775444433 2389999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|||++++++|+++..|+.++.+.....+.|+++|+||+|..
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 999999999999999999998776544589999999999953
No 38
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=4e-28 Score=155.63 Aligned_cols=118 Identities=18% Similarity=0.331 Sum_probs=103.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++...... .++..+.+.+||++|++.+...+..+++++|+++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVY--RHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEE--ETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEE--ECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 47999999999999999999999988878888888766544443 3346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|.
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl 139 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDL 139 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccc
Confidence 9999999999999999999987764 247899999999995
No 39
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=1.5e-28 Score=154.63 Aligned_cols=118 Identities=20% Similarity=0.394 Sum_probs=97.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++++++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI--NGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES--SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 589999999999999999999998887778888887665544433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 120 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDM 120 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccC
Confidence 99999999999999999999877653 47899999999995
No 40
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=3.1e-28 Score=156.12 Aligned_cols=121 Identities=23% Similarity=0.288 Sum_probs=104.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEE-EEEeeeec-------CCceEEEEEEecCCCcccccchHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIV-ECEHSYAL-------DTSKTEIELWDTSGDHKFESVWPAF 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-------~~~~~~~~i~d~~g~~~~~~~~~~~ 73 (135)
.+||+++|++|||||||++++.++.+...+.++.+.++. ........ ....+.+.+||+||++.+...+..+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 90 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF 90 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence 479999999999999999999999888888899988765 33332211 1126899999999999999999999
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|++++|||++++.+++.+..|+..+.......+.|+++|+||+|.
T Consensus 91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (195)
T 3bc1_A 91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL 139 (195)
T ss_dssp TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 9999999999999999999999999999987765568999999999995
No 41
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=3.4e-29 Score=159.64 Aligned_cols=118 Identities=17% Similarity=0.336 Sum_probs=78.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL--DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE--TTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE--CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 479999999999999999999998887778888887766554433 446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 125 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDV 125 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--C
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccC
Confidence 99999999999999999999977643 47899999999995
No 42
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=3.2e-28 Score=158.00 Aligned_cols=118 Identities=23% Similarity=0.376 Sum_probs=104.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+++|.+..+...+.++.+.++....... ++..+.+.+||+||++.++..+..+++++|+++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL--DGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE--TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE--CCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 479999999999999999999999988888889888766554433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 125 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDL 125 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence 99999999999999999999876653 47999999999995
No 43
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=1.3e-28 Score=155.05 Aligned_cols=118 Identities=19% Similarity=0.345 Sum_probs=96.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++++++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI--GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES--SSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE--CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 589999999999999999999998888778888888766554433 446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl 123 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDL 123 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECccc
Confidence 99999999999999999998876543 37899999999994
No 44
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=156.16 Aligned_cols=118 Identities=18% Similarity=0.298 Sum_probs=104.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+++|.+..+...+.++.+.++....... +...+.+.+||+||++++...+..+++++++++
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML--GTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE--TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 479999999999999999999999888788888888766554433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|..+..|+..+..... .+.|+++|+||+|.
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl 142 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDL 142 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSC-TTCEEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECCCc
Confidence 99999999999999999999876543 47999999999994
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=2.8e-28 Score=154.51 Aligned_cols=118 Identities=22% Similarity=0.376 Sum_probs=103.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++++++
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE--TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE--CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 479999999999999999999998888888888887766555433 446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 131 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDL 131 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcc
Confidence 99999999999999999999876543 47999999999994
No 46
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=156.38 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=100.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC-CCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT-TAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
.+||+++|++|||||||++++.+.. +...+.+|.+.....+.. ..+.+.+||++|++.++..+..+++++|++
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS------SSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEEC------SSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEE------CCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 4799999999999999999999987 566778888865444433 347999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCC--CCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDL--NNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~D~ 122 (135)
++|||++++++|+.+..|+..+...... .+.|+++|+||+|.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 138 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence 9999999999999999999998876544 57999999999995
No 47
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=4.3e-28 Score=156.97 Aligned_cols=118 Identities=21% Similarity=0.332 Sum_probs=103.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++...... .++..+.+.+||+||++.+...+..+++++++++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY--RNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEE--ECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 47999999999999999999999988878888888766554443 3446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl 125 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDM 125 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccc
Confidence 9999999999999999999987654 247899999999995
No 48
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=4.1e-28 Score=153.78 Aligned_cols=118 Identities=20% Similarity=0.320 Sum_probs=103.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV--SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE--TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE--CCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 479999999999999999999999888778888887665554433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl 132 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADL 132 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccc
Confidence 99999999999999999999877653 47999999999995
No 49
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=2.4e-28 Score=156.01 Aligned_cols=118 Identities=20% Similarity=0.302 Sum_probs=103.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV--GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE--TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 479999999999999999999999888888888887665554433 446689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++++.+..|+..+..... .+.|+++|+||+|.
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl 127 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDL 127 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccc
Confidence 99999999999999999998876544 47999999999995
No 50
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.5e-28 Score=156.75 Aligned_cols=114 Identities=23% Similarity=0.298 Sum_probs=99.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+ ..+.++.+.....+.. ..+.+.+||++|++.++..+..+++++|+++
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI------NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEE------TTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEE------CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 47999999999999999999999877 5667788766554443 3489999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 99999999999999999999877643458999999999995
No 51
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=1.5e-28 Score=156.89 Aligned_cols=114 Identities=24% Similarity=0.391 Sum_probs=97.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+ ..+.||.|........ ..+.+.+||++|++.++..+..+++++++++
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~------~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQS------QGFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEE------TTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEE------CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 47999999999999999999998754 4466788865444333 3678999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 99999999999999999998876544458999999999995
No 52
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=158.74 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=97.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-chHHhhccCcEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-VWPAFQRDVHGI 80 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~ 80 (135)
.+||+++|++|||||||+++|.+......+.++.+.++...... .++..+.+.+||++|++.+.. ++..+++.++++
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIM--VDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEE--ETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEE--ECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 57999999999999999999986554433445555554444432 345778999999999988765 778889999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 142 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence 999999999999999999999987665458999999999995
No 53
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=4.3e-28 Score=157.06 Aligned_cols=118 Identities=20% Similarity=0.299 Sum_probs=103.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+++++
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR---KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE---EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE---EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 479999999999999999999998888888888876542 22233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 99999999999999999999988766568999999999995
No 54
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=1.6e-28 Score=158.18 Aligned_cols=114 Identities=23% Similarity=0.378 Sum_probs=93.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+. .+.||.+.....+.. ..+.+.+||+||++.++..+..+++++|+++
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY------KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEE------TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEE------CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 479999999999999999999988765 456777754433333 4589999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 142 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCC
Confidence 99999999999999999999877655558999999999995
No 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2e-28 Score=157.58 Aligned_cols=118 Identities=25% Similarity=0.416 Sum_probs=96.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+++|.+..+...+.++.+.++....... ++..+.+.+||++|++.+...+..+++++|+++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL--RGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE--TTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE--CCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 579999999999999999999998887778888887765555433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~-~~~piilV~NK~Dl 143 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDC 143 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccc
Confidence 99999999999999999988876543 47999999999994
No 56
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3e-28 Score=156.72 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=101.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.+|.+..+. . ....++..+.+.+||++|+++++..+..+++++|+++
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-V--SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-E--EEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE-E--EEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 479999999999999999999999888888888876542 2 2233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|||++++++|..+. .|+..+..... +.|+++|+||+|..
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~ 135 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAP--NVPFLLIGTQIDLR 135 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST--TCCEEEEEECTTST
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEEChhhc
Confidence 999999999999997 89999877643 79999999999953
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=3.6e-28 Score=154.99 Aligned_cols=118 Identities=20% Similarity=0.301 Sum_probs=103.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+..+.. ....++..+.+.+||+||++.+...+..+++.+++++
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK---KVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEE---EEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEE---EEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4799999999999999999999988887788887765422 2233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999999999988766568999999999994
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=157.52 Aligned_cols=116 Identities=17% Similarity=0.251 Sum_probs=94.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.+|.+..+. .....++..+.+.+||++|++++...+..+++++|+++
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS---AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE---EEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE---EEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 479999999999999999999998887778888876442 22233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+. .|+..+..... +.|+++|+||+|.
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCP--KAPIILVGTQSDL 136 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS--SSCEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEECHhh
Confidence 999999999999996 79999877644 7999999999995
No 59
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.2e-28 Score=153.59 Aligned_cols=118 Identities=20% Similarity=0.380 Sum_probs=95.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGI 80 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (135)
.+||+++|++|||||||++++.+..+. ..+.++.+.++...... .++..+.+.+||+||++.++..+..++++++++
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD--VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEE--ETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEE--ECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 579999999999999999999998875 46778888876554443 344678999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 128 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDS 128 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCST
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECccc
Confidence 999999999999999999999877654 57999999999995
No 60
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=1.4e-28 Score=156.00 Aligned_cols=120 Identities=18% Similarity=0.286 Sum_probs=100.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.++.+.++......... ...+.+++||+||++.+...+..+++++|+++
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG-NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETT-TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCC-CCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 58999999999999999999999888777788888766555544321 24689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+..... ....|+++|+||+|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl 127 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccc
Confidence 99999999999999999998876421 123458999999995
No 61
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=1.9e-28 Score=159.68 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=99.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.+|.+..+. .. ...++..+.+.+||++|++.+..++..+++++|+++
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-AN--VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EE--EECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EE--EEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 589999999999999999999999888888888886542 22 233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+. .|+..+..... +.|+++|+||+|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl 125 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP--NVPIVLVGTKLDL 125 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEEEEEECHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEeCHHh
Confidence 999999999999996 89999877643 7999999999994
No 62
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=3e-28 Score=153.34 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=87.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-chHHhhccCcEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-VWPAFQRDVHGI 80 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~ 80 (135)
.+||+++|++|||||||++++.+........++.+.+...... ..++..+.+.+||++|++.+.. .+..+++.++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~ 79 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRI--MVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAF 79 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEE--EETTEEEEEEEECCCCC--------CHHHHHCSEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEE--EECCeEEEEEEEECCCccccchhhhhhhhccCCEE
Confidence 4799999999999999999999876655444554444444333 3345778999999999998876 777889999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++|||++++++|+.+..|+.++.......+.|+++|+||+|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (169)
T 3q85_A 80 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121 (169)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred EEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcch
Confidence 999999999999999999999988776568999999999995
No 63
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=158.05 Aligned_cols=118 Identities=21% Similarity=0.374 Sum_probs=93.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV--DGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE--TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE--CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 479999999999999999999998887777888887665444433 346788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl 145 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADI 145 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGG
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccc
Confidence 99999999999999999998876543 47899999999995
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=1e-27 Score=154.70 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=101.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecC--------------------------------
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALD-------------------------------- 49 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-------------------------------- 49 (135)
.+||+++|++|||||||+++|++..+...+.++.+.++..........
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 489999999999999999999999888888899888776655544211
Q ss_pred ---CceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 50 ---TSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 50 ---~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
.....+.+||+||++.+...+..+++.+|++++|||++++.++..+..|+..+..... .|+++|+||+|
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~piilv~NK~D 158 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---YIIILVANKID 158 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---CEEEEEEECTT
T ss_pred cCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---CcEEEEEECCC
Confidence 0128899999999999999999999999999999999999999999999999976543 89999999999
No 65
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.4e-28 Score=155.90 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=101.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+. .....++..+.+.+||++|++. ...+..+++.+++++
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR---HQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE---EEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE---EEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 479999999999999999999999888888888886542 2223345678999999999988 778899999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 99999999999999999999887665568999999999994
No 66
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=3.4e-28 Score=152.66 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=77.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+.... ...++.+..+ ......++..+.+.+||++|++.++..+..+++.+++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 77 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY---DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV 77 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE---EEEEEETTEEEEEEEEECC---------------CCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce---EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEE
Confidence 479999999999999999999976543 3345555433 222244557889999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 118 (166)
T 3q72_A 78 IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccc
Confidence 99999999999999999999987765568999999999995
No 67
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=3.3e-28 Score=154.57 Aligned_cols=120 Identities=21% Similarity=0.394 Sum_probs=92.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++........ .+..+.+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD-GDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCS-SSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEc-CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 5799999999999999999999998888888888877666555432 135689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... ..+.|+++|+||+|.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 130 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc
Confidence 99999999999999999998876542 247899999999995
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=5.6e-28 Score=154.07 Aligned_cols=116 Identities=20% Similarity=0.283 Sum_probs=100.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++++|+++
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS---ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE---EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE---EEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 579999999999999999999998888778888876442 22234457789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+. .|+..+..... +.|+++|+||+|.
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl 121 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP--NTPIILVGTKLDL 121 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST--TSCEEEEEECHHH
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC--CCCEEEEeEcccc
Confidence 999999999999997 79998876644 7999999999994
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=1.2e-27 Score=149.68 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=101.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+++++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY---RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE---EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 47999999999999999999999888777777776543 222233456788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+.......+.|+++|+||+|.
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl 120 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhh
Confidence 99999999999999999999887765557999999999994
No 70
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=8e-28 Score=152.68 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=91.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+.. +.+|.+..+ ... ...++..+.+++||++|+++ ..+++++|+++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~--~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKE--MLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEE--EEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEE--EEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 5899999999999999999999988876 778887543 222 23345678999999999876 56889999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+..... ..+.|+++|+||+|.
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999997666554322 247899999999996
No 71
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.5e-29 Score=159.10 Aligned_cols=118 Identities=20% Similarity=0.327 Sum_probs=103.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||++|++.+...+..+++++++++
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR--HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE--TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE--CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 589999999999999999999999888888888877666555533 346689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 140 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGNKCDM 140 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence 99999999999999999999977553 48999999999995
No 72
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=7.9e-28 Score=156.00 Aligned_cols=120 Identities=27% Similarity=0.428 Sum_probs=104.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV--DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES--SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE--CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 579999999999999999999999888888888888766555433 346789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC---CCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD---LNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~ 123 (135)
+|||++++.+|..+..|+..+..... ..+.|+++|+||+|..
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 99999999999999999998876542 1368999999999953
No 73
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=1.8e-28 Score=160.27 Aligned_cols=121 Identities=26% Similarity=0.372 Sum_probs=103.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecC--------CceEEEEEEecCCCcccccchHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALD--------TSKTEIELWDTSGDHKFESVWPAF 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~~~i~d~~g~~~~~~~~~~~ 73 (135)
.+||+++|++|||||||+++|.+..+...+.++.+.++.......... ...+.+.+||++|++.+...+..+
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 479999999999999999999999887778888887766555444221 116889999999999999999999
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++.+|++++|||++++.+++.+..|+..+.......+.|+++|+||+|.
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl 153 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL 153 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcc
Confidence 9999999999999999999999999998876654468999999999995
No 74
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-28 Score=159.07 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=96.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+++|.+..+...+.++.+.++....... ++..+.+.+||+||++++...+..+++.+++++
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI--EGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE--TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE--CCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 479999999999999999999999888778888887766554433 346689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl 130 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGNKSDL 130 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC---CEEEEEECCGGG
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccc
Confidence 99999999999999999999976643 47899999999994
No 75
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.1e-28 Score=157.91 Aligned_cols=119 Identities=16% Similarity=0.270 Sum_probs=91.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC--CCCCCccCCcceeEEEEEeeee-cCCceEEEEEEecCCCcccccchHHhhccCc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL--TTAEEYHPTQGVRIVECEHSYA-LDTSKTEIELWDTSGDHKFESVWPAFQRDVH 78 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 78 (135)
++||+++|++|||||||++++.+. .+...+.+|.+.++..+..... .++..+.+.+||++|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 4445678888888776665431 1235778999999999999999999999999
Q ss_pred EEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 79 GIIFVFNSGVP-GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|||++++ ++|+.+..|+.++.... ++.|+++||||+|.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 124 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDV 124 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGG
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCc
Confidence 99999999998 58999999999987654 37899999999995
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=7.3e-29 Score=160.78 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=74.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC--CCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL--TTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHG 79 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 79 (135)
.+||+++|++|||||||++++.+. .+...+.+|.+.++.............+.+.+||+||++.+...+..+++++|+
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 99 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYY 99 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcE
Confidence 479999999999999999999998 777777888876555444443221127899999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccC--CCCceEEEEEecCCC
Q psy10117 80 IIFVFNSGVPGHISELLLFYDYFVTQSD--LNNHKCLLIDNVKPG 122 (135)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~ 122 (135)
+++|||++++.+|+.+..|+..+..... ..+.|+++|+||+|.
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 144 (208)
T 2yc2_C 100 AILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDL 144 (208)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECccc
Confidence 9999999999999999999999987654 257999999999995
No 77
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=3.9e-28 Score=155.59 Aligned_cols=114 Identities=23% Similarity=0.336 Sum_probs=99.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+. .+.||.+.....+.. ..+.+.+||+||++.++..+..+++++|+++
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~------~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQY------KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEE------TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEE------CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 479999999999999999999987764 356787765544443 3679999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 99999999999999999999877655568999999999995
No 78
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=157.48 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=93.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+.++....... ++..+.+.+||++|++.+...+..+++.+++++
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV--GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE--TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE--CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 479999999999999999999998888778888887665554433 346689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl 142 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDL 142 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCc
Confidence 99999999999999999999876544 47999999999995
No 79
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=1.5e-27 Score=155.26 Aligned_cols=118 Identities=21% Similarity=0.399 Sum_probs=103.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++++..+...+.++.+.++....... ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI--NGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE--TTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE--CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 479999999999999999999998888788888887765554433 345689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 137 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDM 137 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence 99999999999999999999877654 47899999999996
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=2.4e-28 Score=160.24 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=104.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+++++.+.+...+.++.+.++....... +...+.+.+||++|++.+...+..+++++++++
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE--TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 589999999999999999998887777778889888776665543 446789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|..+..|+..+..... +.|+++|+||+|.
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl 131 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKVDI 131 (221)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHST--TCCEEEEEECTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEECCcc
Confidence 99999999999999999999987654 7999999999994
No 81
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=3.8e-28 Score=154.70 Aligned_cols=114 Identities=23% Similarity=0.365 Sum_probs=95.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+ ..+.++.+........ ....+.+||+||++.++..+..+++++|+++
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY------KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE------TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEE------CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 47999999999999999999998776 5667888865544443 3489999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 99999999999999999999977654568999999999995
No 82
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=5.1e-28 Score=158.17 Aligned_cols=116 Identities=19% Similarity=0.374 Sum_probs=79.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+. .....++..+.+.+||++|++.+...+..+++++++++
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM---VNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE---EEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE---EEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 489999999999999999999998887777788765432 22234457789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 150 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhh
Confidence 999999999999996 7999987654 37899999999995
No 83
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=2.1e-27 Score=152.23 Aligned_cols=118 Identities=19% Similarity=0.317 Sum_probs=91.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.++.+..+. .....++..+.+.+||++|++.+...+..+++.+++++
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR---KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE---EEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE---EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 479999999999999999999998887777777765432 22233456788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++..+++.+..|+..+.......+.|+++|+||+|.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 99999999999999999999887665557999999999995
No 84
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=150.70 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=88.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--cccchHHhhccCcE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--FESVWPAFQRDVHG 79 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--~~~~~~~~~~~~~~ 79 (135)
.+||+++|++|||||||++++.+..+...+ ++.+.++...... .++..+.+.+||++|++. +......+++.+++
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLT--VDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEE--ETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEE--ECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 589999999999999999999998765433 4556555444333 344678999999999987 56677888999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 80 IIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl 123 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhh
Confidence 9999999999999999999999877654457999999999995
No 85
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.6e-27 Score=149.99 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=99.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.++.+..+... ...+...+.+.+||+||++.+...+..+++.+++++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 79 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV---ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI 79 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE---EEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE---EEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence 58999999999999999999999888777778877654322 233456788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhcc-CCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQS-DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+.... ...+.|+++|+||+|.
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl 121 (172)
T 2erx_A 80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121 (172)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccc
Confidence 9999999999999999988887643 2247899999999994
No 86
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=1.2e-27 Score=154.97 Aligned_cols=116 Identities=23% Similarity=0.339 Sum_probs=100.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.++.+...+.++.+.++... ...++..+.+.+||+||++.+...+..+++++|+++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD---IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE---EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE---EEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 58999999999999999999999988888888888765322 233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+ ..|+..+..... +.|+++|+||+|.
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl 141 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDL 141 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST--TCCEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEecHHh
Confidence 99999999999999 789888876543 7999999999995
No 87
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=1.3e-27 Score=155.22 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=99.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++++|+++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE---EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee---EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 47999999999999999999999888877778876533 222334557788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|.
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 146 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDL 146 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhh
Confidence 999999999999996 8999887765 47999999999993
No 88
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=2.1e-28 Score=155.66 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=86.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++++...+..+++++|+++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS---ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC----------CB---CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE---EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 479999999999999999999998887777777765332 22233446678899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+. .|+..+..... +.|+++|+||+|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl 124 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP--GVPIVLVGTKLDL 124 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEEEEEECHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEEEEEechhh
Confidence 999999999999997 79999877643 7999999999994
No 89
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-27 Score=154.61 Aligned_cols=116 Identities=23% Similarity=0.340 Sum_probs=94.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+++|++|||||||++++.+..+...+.++.+..+... ...++..+.+.+||+||++.+...+..+++++++++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD---IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE---EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE---EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 57999999999999999999999988877778887655322 233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|+.+ ..|+..+.... ++.|+++|+||+|.
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 141 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDL 141 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhh
Confidence 99999999999999 78988887654 37999999999995
No 90
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=1e-28 Score=159.73 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=98.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+++|.+..+...+.++.+.++....... ++..+.+.+||++|++.+...+..+++++|+++
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL--DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE--TTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE--CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 479999999999999999999998887777777777665554433 346689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+..... .+.|+++|+||+|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDL 150 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcc-CCCCEEEEEECccC
Confidence 99999999999999999999966544 47999999999994
No 91
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=3.4e-27 Score=154.34 Aligned_cols=119 Identities=19% Similarity=0.203 Sum_probs=103.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||+++++++.+...+.++.+.......... ..+..+.+.+||++|++.+...+..+++++|+++
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLD-DQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEB-TTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEe-CCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 689999999999999999999998888778888887665554432 2234589999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|.
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl 129 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDI 129 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCC
Confidence 99999999999999999999877654 36899999999994
No 92
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.9e-27 Score=151.78 Aligned_cols=118 Identities=21% Similarity=0.294 Sum_probs=100.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+.. ....+...+.+.+||+||++.+...+..+++.+|+++
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ---VISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEE---EEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeE---EEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4799999999999999999999988887778888765432 2233456789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+..|+..+..... ..+.|+++|+||+|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl 126 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 99999999999999988887766432 246899999999995
No 93
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=1.2e-27 Score=153.83 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=91.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCC-----------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEE-----------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW 70 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~-----------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 70 (135)
.+||+++|++|||||||++.+.+ .+... +.+|.+.++...... ..++..+.+++||++|++.++..+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIG-EVKGFKTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCC-CSSSCEEEEEEEECCSCCSCSHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccc-cccCCceEEEEEeCCChHHHHHHH
Confidence 58999999999999999976665 44433 234555443322220 234567899999999999999999
Q ss_pred HHhhccCcEEEEEEeCC------CcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 71 PAFQRDVHGIIFVFNSG------VPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..++++++++++|||++ +.++|..+..|+.++.. ...+.|+++|+||+|.
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl 147 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDL 147 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTS
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhc
Confidence 99999999999999999 55778888899998832 3358999999999994
No 94
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.4e-26 Score=151.33 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=92.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCC--CCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-cccchHHhhccCc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTT--AEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FESVWPAFQRDVH 78 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~ 78 (135)
.+||+++|++|||||||++++.+... ...+ ++.+.+++..... .++..+.+.+||++|++. ++.+...+++.++
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~--~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLM--VDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEE--ETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEE--ECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 47999999999999999999996433 2333 4466655444443 345778899999999876 5556677889999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|||++++++|+.+..|+..+.......++|+++||||+|.
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL 157 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 157 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHH
Confidence 99999999999999999999988876443347999999999995
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.94 E-value=6.7e-27 Score=150.89 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=89.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeec-CCceEEEEEEecCCCcccccch---HHhhccC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYAL-DTSKTEIELWDTSGDHKFESVW---PAFQRDV 77 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~---~~~~~~~ 77 (135)
++||+++|++|||||||++++.+.... . ++.+..+......... ++..+.+++||++|+++|.... ..+++++
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 579999999999999999988874332 2 4444433222222211 2466899999999999987776 8999999
Q ss_pred cEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 78 HGIIFVFNSGVP--GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 78 ~~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++++|||+++. +++..+..|+.++.... .+.|+++||||+|.
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl 141 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDG 141 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGG
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEecccc
Confidence 999999999997 67777888888875443 38999999999994
No 96
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=160.64 Aligned_cols=114 Identities=23% Similarity=0.385 Sum_probs=94.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
++||+|+|++|||||||+++|.++.+... .||.+..+..+.. ..+.++|||+||++.+..++..+++.+|+++
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~------~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEE------TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEec------CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 46999999999999999999999876543 4677776655444 5689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|..+..|+..+.......++|+++|+||+|.
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 278 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccC
Confidence 99999999999999999888877665568999999999995
No 97
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=6.6e-26 Score=145.99 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=90.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCC--CCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-cccchHHhhccCc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTT--AEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-FESVWPAFQRDVH 78 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~ 78 (135)
.+||+++|++|||||||++++.+... ...+ ++.+.+++.... ..++..+.+.+||++|++. ++.+...+++.++
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTL--MVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEE--EETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEE--EECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 57999999999999999999996432 2333 345555544443 3345778889999999876 5667788899999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 79 GIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|||++++++|+.+..|+..+.......+.|+++|+||+|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence 99999999999999999999988876544457999999999995
No 98
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=8.1e-26 Score=155.08 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=94.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc-----ccchHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF-----ESVWPAF 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----~~~~~~~ 73 (135)
++||+++|++|||||||++++.++... ..+.+|++..+...... ..+.+.+||+||++.+ ...+..+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~-----~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL-----GNMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEET-----TTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeC-----CceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 689999999999999999999987433 35778888776654431 3689999999999988 7888999
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhcc-CCCCceEEEEEecCCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS-DLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~D~~ 123 (135)
+++++++++|||++++++|+.+..|...+.... ..+++|+++|+||+|..
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 999999999999999999999977755443321 12479999999999953
No 99
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=2.5e-25 Score=143.84 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=99.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.+..+...+.++.+.++....... ++..+.+.+||++|+++++..+..+++.+++++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~--~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE--TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE--CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 479999999999999999999999888788888887665554433 446788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||+++..+++++..|+..+..... .+.|+++++||+|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i~~v~nK~Dl 122 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDL 122 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECccc
Confidence 99999999999999999988765432 47899999999995
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=1.3e-25 Score=162.70 Aligned_cols=114 Identities=22% Similarity=0.391 Sum_probs=101.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|.++||||||+++|.+..+. .+.+|++.++..+.. ..+.+.+|||+|++.++.++..+++++|+++
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTY------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEES------SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEEe------CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 489999999999999999999998854 456788887766554 5579999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++++|..+..|+.++.+.....+.|++||+||+|.
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 435 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSS
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCC
Confidence 99999999999999999999977665568999999999995
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=2.1e-26 Score=157.95 Aligned_cols=111 Identities=12% Similarity=0.203 Sum_probs=86.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc---chHHhhccC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES---VWPAFQRDV 77 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~ 77 (135)
||+++|++|||||||++++.++.++. .+.||+|.++..+ +..++++||||+|+++|+. .+..||+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-------~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-------STLIDLAVMELPGQLNYFEPSYDSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-------CSSSCEEEEECCSCSSSCCCSHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-------ccEEEEEEEECCCchhccchhhhhhhhccCC
Confidence 68999999999999999988765442 3678998877543 1348999999999999974 468999999
Q ss_pred cEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 78 HGIIFVFNSGVP--GHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 78 ~~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+++++|||++++ +++..+..|+..+.... +++|++++|||+|..
T Consensus 74 ~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~--~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 74 GALVYVIDSQDEYINAITNLAMIIEYAYKVN--PSINIEVLIHKVDGL 119 (331)
T ss_dssp SEEEEECCCSSCTTHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCSS
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHHhhcC--CCCcEEEEEECcccC
Confidence 999999999997 22333334455554433 479999999999964
No 102
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=2.4e-25 Score=153.40 Aligned_cols=116 Identities=20% Similarity=0.269 Sum_probs=100.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+. .....++..+.+.+||++|++.+...+..+++++|+++
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS---ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE---EEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE---EEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 479999999999999999999998888888888876442 22234557788999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+. .|+..+..... +.|+++|+||+|.
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP--NTPIILVGTKLDL 271 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT--TSCEEEEEECHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC--CCcEEEEEEchhc
Confidence 999999999999996 79988876654 7999999999994
No 103
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=1e-24 Score=140.28 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=102.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.++|+++|++|||||||++++.+..++..+.++.+.++....... ++..+.+.+||++|++++...+..+++.+++++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~--~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV--DGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE--TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE--CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 479999999999999999999999888888899998776555543 446778899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||.++..+|+++..|+..+..... .+.|+++++||+|.
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i~~v~nK~Dl 146 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDL 146 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccc
Confidence 99999999999999999988765432 47899999999994
No 104
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=1.3e-27 Score=155.04 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=97.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++++...+..+++++|+++
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 47999999999999999999999888777777766533 222233446678899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|||++++.+|+.+. .|+..+..... +.|+++|+||+|.
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~--~~piilv~NK~Dl 146 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP--NTPIILVGTKLDL 146 (204)
Confidence 999999999999996 89888865543 7899999999995
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.93 E-value=7.2e-25 Score=142.90 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=88.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc-chHHhhccCcEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES-VWPAFQRDVHGI 80 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~ 80 (135)
.+||+++|++|||||||+++++++.+...+.+ .+.++..+.. . ....+.+.+||+||++.++. ++..++++++++
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~~~~--~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAIYKV--N-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEEEEC--S-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEEEEe--c-CCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 57999999999999999999999888766644 4444444332 1 11268999999999999987 788999999999
Q ss_pred EEEEeCCCcc-hHHHHHHHHHHHHhc--cCCCCceEEEEEecCCC
Q psy10117 81 IFVFNSGVPG-HISELLLFYDYFVTQ--SDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 81 i~v~d~~~~~-s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~D~ 122 (135)
++|||+++.+ ++..+..|+..+... ....+.|+++|+||+|.
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 127 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence 9999999854 466665554444332 12247899999999995
No 106
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2e-25 Score=143.29 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=86.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhcc--
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRD-- 76 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~-- 76 (135)
.++|+++|++|||||||++++.+..+.. .+.++.+..+ ....+.+||+||++.+...+..++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-----------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-----------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4699999999999999999999987543 2223322211 34578999999999998888888876
Q ss_pred --CcEEEEEEeCC-CcchHHHHHHHHHHHHhcc---CCCCceEEEEEecCCC
Q psy10117 77 --VHGIIFVFNSG-VPGHISELLLFYDYFVTQS---DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 77 --~~~~i~v~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~ 122 (135)
++++++|||++ +.+++..+..|+..+.... ...+.|+++|+||+|.
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 89999999999 8889999999998886543 2247999999999994
No 107
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=3.6e-25 Score=144.67 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=90.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhcc--
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRD-- 76 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~-- 76 (135)
.++|+++|++|||||||++++.+..+.. .+.++.+..+ ....+.+||+||++.++..+..+++.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 4699999999999999999999987643 2333333221 45678999999999999999999987
Q ss_pred --CcEEEEEEeCC-CcchHHHHHHHHHHHHhcc---CCCCceEEEEEecCCC
Q psy10117 77 --VHGIIFVFNSG-VPGHISELLLFYDYFVTQS---DLNNHKCLLIDNVKPG 122 (135)
Q Consensus 77 --~~~~i~v~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~ 122 (135)
++++++|||++ ++++|..+..|+.++.... ...+.|+++|+||+|.
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 89999999999 8899999999998887653 2247999999999995
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.92 E-value=6e-26 Score=152.09 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=89.1
Q ss_pred eEEEEEECCC---------CCChHHHHHHHhc---CCCCCCccCCc-ceeEEEEEeee------------ecCCceEEEE
Q psy10117 2 KIKILILGPI---------MAGKTVLANALCD---LTTAEEYHPTQ-GVRIVECEHSY------------ALDTSKTEIE 56 (135)
Q Consensus 2 ~~ki~viG~~---------~~GKssli~~l~~---~~~~~~~~~t~-~~~~~~~~~~~------------~~~~~~~~~~ 56 (135)
.+||+++|++ |||||||+++|++ ..+...+.++. +.++....... ..++..+.++
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 98 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMH 98 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEE
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEE
Confidence 4899999999 9999999999999 45555555554 33322211110 1234678899
Q ss_pred EEe-----------------------cCCCcccccchHHhhc---------------------cCcEEEEEEeCCCc--c
Q psy10117 57 LWD-----------------------TSGDHKFESVWPAFQR---------------------DVHGIIFVFNSGVP--G 90 (135)
Q Consensus 57 i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~--~ 90 (135)
||| ++|++++..++..+++ ++|++++|||++++ +
T Consensus 99 i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~ 178 (255)
T 3c5h_A 99 IVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNR 178 (255)
T ss_dssp EEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----
T ss_pred EEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchh
Confidence 999 7788888888888887 79999999999998 9
Q ss_pred hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 91 HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 91 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|+.+..|+..+.......++|+++|+||+|.
T Consensus 179 s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl 210 (255)
T 3c5h_A 179 NFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE 210 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred hHHHHHHHHHHHHHHhccCCCCEEEEEEcccc
Confidence 99999999999876532347999999999995
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=1.8e-24 Score=136.95 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=84.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.++|+++|++|||||||++++.+..+...+.++.+.++....... ....+.+||+||++.+...+..+++.+|+++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV----NDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE----TTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe----CCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 469999999999999999999998887666565554443333322 2357889999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+|||++++..... ..++..+.. .+.|+++|+||+|..
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKP 120 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSS
T ss_pred EEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCC
Confidence 9999988543222 223333321 368999999999964
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=3.7e-23 Score=130.01 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=79.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------cchHHhhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------SVWPAFQR 75 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~ 75 (135)
+++|+++|++|||||||++++.+..+.....++.+.+........ ....+.+||++|++.+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY----NGEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE----TTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE----CCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 579999999999999999999987665444444443332222221 23689999999998775 33456665
Q ss_pred --cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 76 --DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 76 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++++++|+|.++. +....|+.++.. .+.|+++|+||+|.
T Consensus 79 ~~~~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv~nK~Dl 120 (165)
T 2wji_A 79 NEKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDL 120 (165)
T ss_dssp HHCCSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEEEECHHH
T ss_pred cCCCCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEEEEchHh
Confidence 89999999999874 445668877754 26899999999993
No 111
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.90 E-value=6.9e-24 Score=154.83 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=89.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEe------eeecCCceEEEEEEecCCCcccccchHHhhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEH------SYALDTSKTEIELWDTSGDHKFESVWPAFQR 75 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 75 (135)
++||+++|.+|||||||++++++..+...+.+|.+.++..... ....++..+.+.+||++|++.+......+++
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~ 120 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMT 120 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHcc
Confidence 5899999999999999999999998888888999988776532 2233345789999999999999999999999
Q ss_pred cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 76 DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 76 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++++++|||+++ ++.+..|+..+..... +.|+++|+||+|.
T Consensus 121 ~~d~ii~V~D~s~---~~~~~~~~~~l~~~~~--~~pvilV~NK~Dl 162 (535)
T 3dpu_A 121 RSSVYMLLLDSRT---DSNKHYWLRHIEKYGG--KSPVIVVMNKIDE 162 (535)
T ss_dssp SSEEEEEEECGGG---GGGHHHHHHHHHHHSS--SCCEEEEECCTTT
T ss_pred CCcEEEEEEeCCC---chhHHHHHHHHHHhCC--CCCEEEEEECCCc
Confidence 9999999999875 4677889999877654 7899999999994
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.90 E-value=4.6e-23 Score=130.52 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=81.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccch--------HH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVW--------PA 72 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~ 72 (135)
.+||+++|++|||||||++++.+.... ....++.+.++....... ....+.+||++|++.+.... ..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI----DGMPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE----TTEEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE----CCeEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 479999999999999999999987642 122233333332333322 23468999999987543211 23
Q ss_pred hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++++|++++|||++++.+++ ...|+..+..... .+.|+++|+||+|.
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~-~~~p~ilv~NK~Dl 127 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP-AKLPITVVRNKADI 127 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC-TTCCEEEEEECHHH
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc-cCCCEEEEEECccC
Confidence 578999999999999998886 4578777765443 47899999999994
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.89 E-value=3.4e-24 Score=136.97 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=87.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC-----------CcccccchH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG-----------DHKFESVWP 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~ 71 (135)
+||+++|++|||||||++++.+..+...+.++.+.....+.. . .+.+||+|| ++.++..+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~------~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW------K--NHKIIDMPGFGFMMGLPKEVQERIKDEIV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE------T--TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec------C--CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence 689999999999999999999988776666665544433333 1 689999999 677778888
Q ss_pred Hhhcc-CcEEEEEEeCCCcchHHHH-HHHHHH--------HHhccCCCCceEEEEEecCCCC
Q psy10117 72 AFQRD-VHGIIFVFNSGVPGHISEL-LLFYDY--------FVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 72 ~~~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
.+++. +++++++|++.+.+++.++ ..|... +.......+.|+++|+||+|..
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI 135 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc
Confidence 88887 8988899999889999887 677653 2222222478999999999953
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.89 E-value=1.8e-22 Score=125.82 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=74.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc-------cccchHHhh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK-------FESVWPAFQ 74 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~ 74 (135)
.||+++|++|||||||++++.+.... ....++............ ....+.+||+||++. +...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET----DRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE----TTEEEEEEECGGGCSSSSCCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe----CCceEEEEECCCCCCccchHHHHHHHHHHHH
Confidence 58999999999999999999987643 122222222222222222 234789999999887 344556678
Q ss_pred ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+.++++++|+|.++..+. ...|+.+.... .+.|+++|+||+|..
T Consensus 78 ~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDP 121 (161)
T ss_dssp TTCSEEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSG
T ss_pred HhCCEEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 999999999999886443 22333333332 268999999999953
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=1.5e-22 Score=129.22 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=83.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------cchHHhhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------SVWPAFQR 75 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~ 75 (135)
++||+++|++|||||||++++.+..+.....++.+.+........ ....+.+||+||++.+. .++..++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY----NGEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE----TTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe----CCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 479999999999999999999987654444455554443333322 34789999999998875 34566665
Q ss_pred --cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 76 --DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 76 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
.++++++|+|.++ ++....|+..+.. .+.|+++|+||+|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~D 123 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMD 123 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHH
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhh
Confidence 5999999999864 6777888888754 3689999999999
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.88 E-value=3.9e-22 Score=131.35 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=77.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccC--CcceeEEEEEeeeecCCceEEEEEEecCCC------ccc---ccch
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHP--TQGVRIVECEHSYALDTSKTEIELWDTSGD------HKF---ESVW 70 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~------~~~---~~~~ 70 (135)
.+||+++|++|||||||+++|++..+.....+ +.......... ....+.+||+||+ ++. ...+
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 102 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH------KLNKYQIIDTPGLLDRAFENRNTIEMTTI 102 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE------TTEEEEEEECTTTTTSCGGGCCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec------CCCeEEEEECCCCcCcccchhhhHHHHHH
Confidence 47999999999999999999998765421111 12221111111 3478999999998 331 1123
Q ss_pred HHhhccCcEEEEEEeCCCcchHHH--HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPGHISE--LLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..++..++++++|||++++.+|.. ...|+..+.... .+.|+++|+||+|.
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl 154 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF--SNKSIVIGFNKIDK 154 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC---CCCEEEEEECGGG
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh--cCCcEEEEEeCccc
Confidence 445788999999999999988752 346777765432 37899999999994
No 117
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=1.3e-22 Score=130.19 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=75.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC----------CcccccchH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFESVWP 71 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~ 71 (135)
.++|+++|++|||||||++++++..+...+.++.+.+......... ..+.+||+|| ++.+...+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-----DELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-----TTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-----CcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 3699999999999999999999987655555555443322222111 1589999999 777777888
Q ss_pred HhhccC---cEEEEEEeCCCcchHHHHH--HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRDV---HGIIFVFNSGVPGHISELL--LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~~---~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+++.+ +++++|+|++++.++.... .|+.. .+.|+++|+||+|.
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-------YGIPVIVIATKADK 146 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGG
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEECccc
Confidence 888877 9999999999987776542 34332 36899999999995
No 118
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=2e-21 Score=134.22 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCC----------CcchHHHHHHHHHHH
Q psy10117 33 PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSG----------VPGHISELLLFYDYF 102 (135)
Q Consensus 33 ~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i 102 (135)
+|+|+....+.. ..+++++||++|+++++..|..||+++++++||||++ +.++|.+...|+..+
T Consensus 147 ~TiGi~~~~~~~------~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 147 KTTGIHEYDFVV------KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CCCSCEEEEEES------SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred ceeeeEEEEEEe------eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 445655544444 4689999999999999999999999999999999998 778899999999999
Q ss_pred HhccCCCCceEEEEEecCC
Q psy10117 103 VTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 103 ~~~~~~~~~p~ivv~nK~D 121 (135)
.+.....+.|++|++||+|
T Consensus 221 ~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp HHCGGGTTSEEEEEEECHH
T ss_pred hhhhccCCCeEEEEEECch
Confidence 8877667899999999999
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=7e-22 Score=132.41 Aligned_cols=108 Identities=19% Similarity=0.087 Sum_probs=78.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc----------chHH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES----------VWPA 72 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~ 72 (135)
.+|+++|.+|||||||+++|++........|+.+.+........ ....+.+||+||...+.. +...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~----~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL----GEHLIEITDLPGVYSLVANAEGISQDEQIAAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE----TTEEEEEEECCCCSSCC------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE----CCeEEEEEeCCCcccccccccCCCHHHHHHHH
Confidence 48999999999999999999987654434455554443333332 234899999999887754 4555
Q ss_pred hh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 73 FQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 73 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
|+ +++|++++|+|.++.+++..+..|+.+ .+.|+++|+||+|
T Consensus 78 ~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~-------~~~pvilv~NK~D 121 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLERHLYLTSQLFE-------LGKPVVVALNMMD 121 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT-------SCSCEEEEEECHH
T ss_pred HHhhCCCCEEEEEeeCCCchhHHHHHHHHHH-------cCCCEEEEEEChh
Confidence 66 899999999999986555444333322 2689999999999
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.86 E-value=2.8e-21 Score=129.59 Aligned_cols=109 Identities=23% Similarity=0.204 Sum_probs=80.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc------hHHhh-
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV------WPAFQ- 74 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~- 74 (135)
.++|+++|++|||||||+++|++..+.....|+............ ....+.+||+||...+... ...|+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY----KGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE----TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE----CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 479999999999999999999987654333344443333333221 3478999999999877653 24555
Q ss_pred -ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 75 -RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 75 -~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
..+|++++|+|.++.++ ...|..++... +.|+++|+||+|
T Consensus 81 ~~~~d~ii~V~D~t~~~~---~~~~~~~l~~~----~~pvilv~NK~D 121 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQ---SLYLLLEILEM----EKKVILAMTAID 121 (258)
T ss_dssp HSCCSEEEEEEETTSCHH---HHHHHHHHHTT----TCCEEEEEECHH
T ss_pred hcCCCEEEEEeCCCchhh---HHHHHHHHHhc----CCCEEEEEECcC
Confidence 58999999999998654 34576666442 689999999999
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.86 E-value=1.9e-21 Score=131.50 Aligned_cols=109 Identities=20% Similarity=0.167 Sum_probs=77.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc----------chH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES----------VWP 71 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~ 71 (135)
+++|+++|.+|||||||+++|++..+.....++.+.......... ....+.+||+||...+.. ...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST----TDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC----SSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe----CCCceEEEECcCCCccccccccCCHHHHHHH
Confidence 689999999999999999999997654334444444433333322 235788999999887662 122
Q ss_pred Hhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 72 AFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 72 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
.|+ +++|++++|+|.++.++...+..|+.+. +.|+++|+||+|
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~D 123 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLD 123 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHH
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECcc
Confidence 333 6999999999998865544444444332 689999999999
No 122
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=7.8e-21 Score=130.82 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=70.1
Q ss_pred cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCC----------CcchHHHHHHHHHH
Q psy10117 32 HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSG----------VPGHISELLLFYDY 101 (135)
Q Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~ 101 (135)
.+|+|.....+.. ..+++++||++|+++++..|..||+++++++||||++ +.++|.+...|+..
T Consensus 152 ~~TiGi~~~~~~~------~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~ 225 (327)
T 3ohm_A 152 VPTTGIIEYPFDL------QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT 225 (327)
T ss_dssp CCCCSEEEEEEEE------TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred CceeeEEEEEEEe------eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHH
Confidence 3445655444443 4689999999999999999999999999999999665 66778888899999
Q ss_pred HHhccCCCCceEEEEEecCC
Q psy10117 102 FVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 102 i~~~~~~~~~p~ivv~nK~D 121 (135)
+.+.....+.|++|++||+|
T Consensus 226 i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 226 IITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp HHTSGGGTTCEEEEEEECHH
T ss_pred HhhhhccCCceEEEEEECch
Confidence 98776667899999999999
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=1.2e-20 Score=129.37 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=83.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC---CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc----------cc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE---EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE----------SV 69 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~ 69 (135)
-.|+++|.+|||||||+++|++..... ....|.......... +....+.+|||||...+. ..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-----~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-----PNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-----TTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-----CCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 368999999999999999999987642 112222211111111 126789999999986554 55
Q ss_pred hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+++.+|++++|+|+++..++.....|++.+.. .+.|+++|+||+|.
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl 134 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDK 134 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGG
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccC
Confidence 66788999999999999999999888888888755 26899999999995
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.85 E-value=2e-21 Score=124.43 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=77.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC----------CcccccchH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFESVWP 71 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~ 71 (135)
.+||+++|++|||||||++++++... ..+.++.+.+....... ....+.+||+|| ++.+...+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYL-----VNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEE-----ETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEE-----ECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 46999999999999999999999863 33344444322221111 122578999999 667777788
Q ss_pred HhhccC---cEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRDV---HGIIFVFNSGVPGHI--SELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~~---~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+++.+ +++++|+|.++..+. ..+..|+... +.|+++|+||+|.
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDK 145 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGG
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhc
Confidence 888776 999999999876443 3444555543 6899999999995
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=2.6e-20 Score=127.35 Aligned_cols=112 Identities=20% Similarity=0.181 Sum_probs=77.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc--------cccchHHh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK--------FESVWPAF 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~ 73 (135)
.+|+++|.+|||||||+++|++..... ...+........... . .....+.+|||||... +......+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~--~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL--T--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE--E--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE--E--eCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 479999999999999999999987642 122211111111111 1 1457899999999876 34455667
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHH-HHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFY-DYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|++++|+|++++.+. ...|+ +.+.... .+.|+++|+||+|.
T Consensus 84 l~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~--~~~p~ilV~NK~Dl 129 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTP--EDELVARALKPLV--GKVPILLVGNKLDA 129 (301)
T ss_dssp TSSCSEEEEEEETTSCCCH--HHHHHHHHHGGGT--TTSCEEEEEECGGG
T ss_pred HhcCCEEEEEEECCCCCCh--HHHHHHHHHHhhc--CCCCEEEEEECccc
Confidence 8999999999999887543 34555 4443332 36899999999995
No 126
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.85 E-value=2.6e-20 Score=129.63 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=65.5
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCC----------cchHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGV----------PGHISELLLFYDYFVTQSDLNNHKCLLIDNVK 120 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 120 (135)
..+.+++||++|++.++..|..||++++++|||||+++ ..+|.+...|+..+.++....+.|++||+||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 36889999999999999999999999999999999999 56799999999999887655689999999999
Q ss_pred CC
Q psy10117 121 PG 122 (135)
Q Consensus 121 D~ 122 (135)
|.
T Consensus 271 DL 272 (353)
T 1cip_A 271 DL 272 (353)
T ss_dssp HH
T ss_pred Cc
Confidence 93
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=5.1e-21 Score=129.18 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=78.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc------cchHHhhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE------SVWPAFQR 75 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~ 75 (135)
.++|+++|++|||||||+++|++........|........... .. ...+.+||+||+..+. .+...|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~----~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV----KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC----TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE----ec-CCeEEEEECCCcCccCCCChHHHHHHHHHh
Confidence 4799999999999999999999876433333433332222222 12 5679999999998875 34566665
Q ss_pred --cCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 76 --DVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 76 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
++|++++|+|.++.++ ...|..++.. .+.|+++|+||+|
T Consensus 78 ~~~~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~D 118 (272)
T 3b1v_A 78 SQRADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMID 118 (272)
T ss_dssp TTCCSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHH
T ss_pred cCCCCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChh
Confidence 6999999999987543 4567666654 2689999999999
No 128
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.85 E-value=2.7e-20 Score=125.04 Aligned_cols=115 Identities=19% Similarity=0.164 Sum_probs=80.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC--CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhc----
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA--EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR---- 75 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---- 75 (135)
++||+++|++|+|||||+++|++.... ..+.++ ........... ....+.+|||||++.+......+++
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~----~~~~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTM----GGFTINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEE----TTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEE----CCeeEEEEECCCCCCcccchHHHHHHHHH
Confidence 489999999999999999999987642 222221 11111222211 4458999999999888776666654
Q ss_pred -----cCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCC-CceEEEEEecCCC
Q psy10117 76 -----DVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLN-NHKCLLIDNVKPG 122 (135)
Q Consensus 76 -----~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~-~~p~ivv~nK~D~ 122 (135)
+++++++|++++... +... ..|++.+....+.. ..|+++|+||+|.
T Consensus 111 ~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp HTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred HHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 789999999998765 5444 56777776543311 2499999999995
No 129
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=1.5e-20 Score=126.77 Aligned_cols=110 Identities=19% Similarity=0.155 Sum_probs=81.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc------chHHhh-
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES------VWPAFQ- 74 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~- 74 (135)
.+||+++|++|||||||+++|++..+.....++.+.......... ....+.+||+||...+.. ....|+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY----REKEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE----TTEEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE----CCceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 479999999999999999999997664444555555544443332 334699999999887766 555666
Q ss_pred -ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 75 -RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 75 -~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
.++|++++|+|.++. +....|..++.... ..|+++|+||+|
T Consensus 79 ~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~---~~p~ilv~NK~D 120 (271)
T 3k53_A 79 DGNADVIVDIVDSTCL---MRNLFLTLELFEME---VKNIILVLNKFD 120 (271)
T ss_dssp TTCCSEEEEEEEGGGH---HHHHHHHHHHHHTT---CCSEEEEEECHH
T ss_pred ccCCcEEEEEecCCcc---hhhHHHHHHHHhcC---CCCEEEEEEChh
Confidence 689999999999874 34455555554432 389999999999
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.84 E-value=2e-20 Score=134.72 Aligned_cols=114 Identities=21% Similarity=0.159 Sum_probs=65.1
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH--------
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA-------- 72 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------- 72 (135)
.+||+++|++|||||||+|+|++.... ....++.+.+........ ....+.+|||||...+...++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~----~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH----DKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEE----TTEEEEEEC--------------------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE----CCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 378999999999999999999987532 222232232222222222 3468999999998776644433
Q ss_pred hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++.+|++++|+|.+++.+++++..+...+... .+.|+++|+||+|.
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl 355 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDR 355 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTS
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCC
Confidence 678999999999999999887544333322222 16899999999995
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=123.70 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=73.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccC--CcceeEEEEEeeeecCCceEEEEEEecCCCc-----------cccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHP--TQGVRIVECEHSYALDTSKTEIELWDTSGDH-----------KFES 68 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----------~~~~ 68 (135)
.+||+++|++|||||||++++++........+ +.+.......... ....+.||||||.. .+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW----KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE----TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe----CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999877554433 2222222222221 34588999999932 3334
Q ss_pred chHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 69 VWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
....++++++++++|+|+++... ....|+..+....+ ....|+++|+||+|.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 44445668899999999876443 22333333322111 013599999999994
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=1.1e-19 Score=129.99 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=71.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc---------cccchHH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK---------FESVWPA 72 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~ 72 (135)
.+|+++|.++||||||+|+|++.... ....|+.+.+........ ....+.+|||+|.+. ++.....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~----~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW----YGKTFKLVDTCGVFDNPQDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE----TTEEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE----CCeEEEEEECCCccccccchHHHHHHHHHHH
Confidence 47999999999999999999987643 122233322222222222 334789999999764 2345667
Q ss_pred hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++++|++++|+|.++..+.. ..|+..+.+. .+.|+++|+||+|.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~ 122 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAEN 122 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCS
T ss_pred HHHhCCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCC
Confidence 899999999999998765542 2233333222 16899999999995
No 133
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=1.6e-20 Score=122.89 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=75.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCC----------cccccchH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD----------HKFESVWP 71 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~ 71 (135)
.++|+++|++|||||||+++|++.........+.+.+......... ......+.+|||||. +.+.....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 3689999999999999999999986321122222221111111111 124568999999994 44456666
Q ss_pred Hhhcc---CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRD---VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.|++. +|++++|+|.++..+ ..-..|+..+.. .+.|+++|+||+|.
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~----~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP----TGKPIHSLLTKCDK 156 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG----GCCCEEEEEECGGG
T ss_pred HHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh----cCCCEEEEEecccc
Confidence 77776 778999999987543 223445555543 36899999999995
No 134
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.82 E-value=4.2e-19 Score=119.67 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=77.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH-------h-
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA-------F- 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------~- 73 (135)
.++|+++|.+|+|||||+++|++...... .+..+.+......... .....+.+|||||...+...... +
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~--~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEE--ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEe--eCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 57999999999999999999998765311 1111111111111111 14568999999998776543322 1
Q ss_pred -hccCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCC-CCceEEEEEecCCC
Q psy10117 74 -QRDVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDL-NNHKCLLIDNVKPG 122 (135)
Q Consensus 74 -~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~p~ivv~nK~D~ 122 (135)
.+.+|++++|+|++.. ++... ..|+..+....+. ...|+++|+||+|.
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 2479999999998764 45444 5777777654331 12699999999995
No 135
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=2.7e-19 Score=119.31 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=73.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccC----CcceeEEEEEeeeecCCceEEEEEEecCCC--------cccccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHP----TQGVRIVECEHSYALDTSKTEIELWDTSGD--------HKFESV 69 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~ 69 (135)
.+||+++|.+|||||||++++++........+ |.......... ....+.||||||. +.+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~------~~~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW------DKCHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE------TTEEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE------CCcEEEEEECCCCCCCCCCcHHHHHHH
Confidence 58999999999999999999999776533222 22222222222 4568999999996 334333
Q ss_pred hHHhh----ccCcEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAFQ----RDVHGIIFVFNSGVPGHI-SELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~----~~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...++ +.+|++++|+|+++.... ..+..|+.++... ...+.|+++++||+|.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGG
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhc
Confidence 33444 899999999999753221 2223444443221 1236899999999995
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=3.7e-20 Score=132.31 Aligned_cols=113 Identities=18% Similarity=0.101 Sum_probs=73.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc--------ccccchHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH--------KFESVWPAF 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~ 73 (135)
..+|+++|.+|||||||+++|++.... ...++.|.+........ ......+.+|||+|++ .++.....+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~--~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEEC--TTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEE--EECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 469999999999999999999987653 12233343222111111 1234579999999985 566677788
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|++++|+|..++.++. ..|+.++.+. .+.|+++|+||+|.
T Consensus 80 ~~~ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~ 123 (436)
T 2hjg_A 80 MDEADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDN 123 (436)
T ss_dssp HHHCSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC
T ss_pred HHhCCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccC
Confidence 99999999999998876653 3455554432 36899999999995
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.81 E-value=8.3e-20 Score=126.69 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=84.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC-CCc-cCCcceeEEEEEeeeecCCceEEEEEEecCCC----cccccchHHhhc--
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA-EEY-HPTQGVRIVECEHSYALDTSKTEIELWDTSGD----HKFESVWPAFQR-- 75 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~~~-- 75 (135)
+|+++|.++||||||++++++..+. ..+ ..|...+...+... ....+.+||+||. +.++.+...|++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-----~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-----DGRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-----SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-----CCceEEEecCCCCcccccccchhHHHHHHHH
Confidence 5889999999999999999987542 112 23333333333321 2358999999995 344555566655
Q ss_pred -cCcEEEEEEeCCC---cchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 76 -DVHGIIFVFNSGV---PGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 76 -~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
.++++++|+|+++ +++++.+..|+.++..+.. ..+.|+++|+||+|.
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl 286 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM 286 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccC
Confidence 4999999999998 7889999999999987643 357999999999995
No 138
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.81 E-value=6e-19 Score=118.19 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=72.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC-CCCCccCC-cceeEEEEEeeeecCCceEEEEEEecCCCcccccchH--------
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT-TAEEYHPT-QGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWP-------- 71 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-------- 71 (135)
.++|+|+|++|||||||++++++.. +...+.++ ............ ....+.||||||...+.....
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW----GNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE----TTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe----CCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 4799999999999999999999876 33333333 222222222211 346899999999766533222
Q ss_pred ---HhhccCcEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 72 ---AFQRDVHGIIFVFNSGVPGHI-SELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 72 ---~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
.+++.+|++++|+|+++.... ..+..|+.++..... ...+++++.||+|..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLN 152 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGT
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccC
Confidence 267889999999999863322 223345544422111 124455555599953
No 139
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.81 E-value=4.4e-19 Score=119.84 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=74.7
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCC-CCc-------cCCcceeEEEEEeeeecCCceEEEEEEecCCCc-------c
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTA-EEY-------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-------K 65 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~-~~~-------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-------~ 65 (135)
++++|+++|.+|+|||||+|+|++.... ..+ .+|.+.+...... ..++..+.+++|||||.. .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI--KEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEE--CC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEE--ecCCeEEEEEEEECCCccccccchhh
Confidence 4689999999999999999998775543 333 5666666554444 233456799999999963 2
Q ss_pred cccch-------HHhhcc-------------CcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 66 FESVW-------PAFQRD-------------VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 66 ~~~~~-------~~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+..+. ..|+.. +|+++++++.+.......-..+++.+.. ..|+++|+||+|.
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADT 156 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCC
Confidence 33333 444443 7799999987654332333455666532 6899999999994
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=7e-20 Score=130.88 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=76.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCC----------cccccchH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD----------HKFESVWP 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~ 71 (135)
+||+++|.+|||||||++++++.... ....++.+.+....... . ....+.+|||||+ +.|...+.
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~--~--~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT--Y--NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEE--E--TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEE--E--CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 79999999999999999999987642 12222222222111221 1 2346899999997 44444333
Q ss_pred -HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 -AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+++.+|++++|+|++++.++... .|+..+.. .+.|+++|+||+|.
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDA 298 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGG
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccC
Confidence 478899999999999998887765 57766643 36899999999994
No 141
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.79 E-value=3.8e-18 Score=119.16 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=80.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc---------chH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES---------VWP 71 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~ 71 (135)
++|+++|++|||||||++++.+...... ...|.+........ ....+.+|||||...+.. ...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED------GYFRYQIIDTPGLLDRPISERNEIEKQAIL 241 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE------TTEEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe------cCceEEEEeCCCccccchhhhhHHHHHHHH
Confidence 5899999999999999999998764311 12233332222211 346799999999754321 112
Q ss_pred HhhccCcEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 72 AFQRDVHGIIFVFNSGVPG--HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+...+|++++|+|+++.. +++....|+..+..... +.|+++|+||+|.
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl 292 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDV 292 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECccc
Confidence 3445799999999998877 67888899998876543 7899999999995
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.79 E-value=3.7e-18 Score=120.94 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=84.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEE------------eee--------ecCCceEEEEEEecC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECE------------HSY--------ALDTSKTEIELWDTS 61 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~------------~~~--------~~~~~~~~~~i~d~~ 61 (135)
.+||+++|++++|||||+++|++...... .+....... ... ........+.+||+|
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKK----LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSS----SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccc----cCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 47999999999999999999998543221 111100000 000 001123789999999
Q ss_pred CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|++.|......++..+|++++|+|+++..++.+..+|+..+.... ..|+++|+||+|.
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl 141 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDV 141 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGG
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccc
Confidence 999999999999999999999999999887888888887665432 3589999999994
No 143
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=124.60 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=68.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CCc--------cCCcceeEEEEEeeeecCCceEEEEEEecCCC-------cc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EEY--------HPTQGVRIVECEHSYALDTSKTEIELWDTSGD-------HK 65 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~~ 65 (135)
.++|+++|++|+|||||+++|++.... ..+ .++++.....+.. ...+..+.+++||++|. +.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~--~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEI--EERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC------CEEEEEEEEC-------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEe--ecCCcccceEEEEeccccccCccHHH
Confidence 689999999999999999998765332 222 2444443322222 33345678999999998 77
Q ss_pred cccchH-------HhhccCcEE-----------EEEEeCCC-cchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 66 FESVWP-------AFQRDVHGI-----------IFVFNSGV-PGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 66 ~~~~~~-------~~~~~~~~~-----------i~v~d~~~-~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+..+.. .|++.++++ +++|++++ ..++..+. .|++.+. .+.|+++|+||+|.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-----~~~piIlV~NK~Dl 186 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-----NKVNIVPVIAKADT 186 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-----S-SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-----cCCCEEEEEECCCC
Confidence 777776 777665543 36666655 55676665 4555541 37899999999995
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=2.4e-19 Score=128.75 Aligned_cols=113 Identities=18% Similarity=0.120 Sum_probs=77.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCC--------CcccccchHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG--------DHKFESVWPAF 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~~~ 73 (135)
..+|+++|.+|||||||+++|.+.... ....+.|.+....... .......+.+|||+| ++.++.....+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEE--CTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 358999999999999999999987653 1223334332222222 222456899999999 67777788889
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|++++|+|..+. +.....|+.++.+. .+.|+++|+||+|.
T Consensus 100 ~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~ 143 (456)
T 4dcu_A 100 MDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDN 143 (456)
T ss_dssp HHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC--
T ss_pred HhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccc
Confidence 9999999999997653 44445566655443 36899999999994
No 145
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.78 E-value=2.9e-19 Score=127.69 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=79.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC--CCCCC-------------------------------ccCCcceeEEEEEeeeec
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL--TTAEE-------------------------------YHPTQGVRIVECEHSYAL 48 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~~ 48 (135)
.+||+++|+.++|||||+++|+.. .+... ...|+...+..+.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~----- 80 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE----- 80 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-----
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-----
Confidence 479999999999999999999864 22110 1122222222222
Q ss_pred CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhcc----CCCCceEEEEEecCCCC
Q psy10117 49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQS----DLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~~p~ivv~nK~D~~ 123 (135)
.....+++||+||++.|...+..+++.+|++++|+|+++ .+|+.+..|..+...+. ...-.|+++++||+|..
T Consensus 81 -~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 81 -TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp -CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred -cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 245789999999999999889999999999999999998 77876554443332221 11124699999999953
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.78 E-value=9.2e-19 Score=126.51 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=74.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC--C-----------------------------C--ccCCcceeEEEEEeeeec
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA--E-----------------------------E--YHPTQGVRIVECEHSYAL 48 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~--~-----------------------------~--~~~t~~~~~~~~~~~~~~ 48 (135)
.+||+++|.+++|||||+++|++.... . + ...|+...+..+.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~----- 107 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS----- 107 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-----
Confidence 479999999999999999999865110 0 0 0112222222222
Q ss_pred CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHH------HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE------LLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.....+.|||+||++.|......+++.+|++++|+|+++..++.. ..+.+..+ ... ...|+++|+||+|.
T Consensus 108 -~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~--~~~~iIvviNK~Dl 183 (483)
T 3p26_A 108 -THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDN 183 (483)
T ss_dssp -CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-HHT--TCCCEEEEEECGGG
T ss_pred -cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-HHc--CCCcEEEEEECcCc
Confidence 245789999999999999999999999999999999998754322 22222222 221 23579999999995
No 147
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.78 E-value=2e-18 Score=127.05 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=79.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC--CCC-----------CccCCcceeEEEEE--eeee-cCCceEEEEEEecCCCccc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT--TAE-----------EYHPTQGVRIVECE--HSYA-LDTSKTEIELWDTSGDHKF 66 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~--~~~-----------~~~~t~~~~~~~~~--~~~~-~~~~~~~~~i~d~~g~~~~ 66 (135)
.||+++|+.++|||||+++|+... ... ..+.+.|.++.... ..+. .++..+.+++|||||++.|
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 589999999999999999998632 110 01122333332222 2222 1455789999999999999
Q ss_pred ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
...+..+++.+|++++|+|+++..++.....|..... .++|+++|+||+|..
T Consensus 85 ~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~ 136 (599)
T 3cb4_D 85 SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLP 136 (599)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTST
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcc
Confidence 9999999999999999999999888888888876552 268999999999954
No 148
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.78 E-value=1.2e-18 Score=125.65 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=77.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc-cccc--------chHH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-KFES--------VWPA 72 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~~~~--------~~~~ 72 (135)
++|+++|.++||||||+|+|++.... ....+..+.+........ ....+.+|||+|.. .+.. ....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~----~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI----RGILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE----TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec----CCeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 79999999999999999999987532 222232222222222222 34679999999987 5542 2345
Q ss_pred hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++.+|++++|+|++++.+++... +++.+ .+.|+++|+||+|.
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL 362 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDV 362 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSS
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECccc
Confidence 788999999999999988876643 22332 26899999999995
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.77 E-value=2.3e-20 Score=135.73 Aligned_cols=113 Identities=18% Similarity=0.061 Sum_probs=83.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGII 81 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (135)
.++|+++|++++|||||+++|.+..+.....++++..+..+.... +....+++|||||++.|..++..+++.+|+++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~---~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL---PSGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS---SCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe---CCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 368999999999999999999987654444444444332222221 12347899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 82 FVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+|+|+++.........| ..+. ..+.|+++++||+|.
T Consensus 81 LVVDa~dg~~~qt~e~l-~~~~----~~~vPiIVViNKiDl 116 (537)
T 3izy_P 81 LVVAADDGVMKQTVESI-QHAK----DAHVPIVLAINKCDK 116 (537)
T ss_dssp EECBSSSCCCHHHHHHH-HHHH----TTTCCEEECCBSGGG
T ss_pred EEEECCCCccHHHHHHH-HHHH----HcCCcEEEEEecccc
Confidence 99999986655444333 2222 136899999999994
No 150
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.77 E-value=3.9e-19 Score=126.26 Aligned_cols=111 Identities=15% Similarity=0.036 Sum_probs=73.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc-------hHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV-------WPAF 73 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~ 73 (135)
+++|+++|+.++|||||++++++..+. ....+.............. ....+++|||||++.+... ...+
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~---~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH---PIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET---TTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC---CCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 579999999999999999999987653 1112222222222222221 1238999999999877544 3457
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++|++++|+|.... .....|+..+... +.|+++|+||+|.
T Consensus 111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl 152 (423)
T 3qq5_A 111 FYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDV 152 (423)
T ss_dssp HTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTT
T ss_pred HhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCC
Confidence 8899999999998332 3446677776544 6899999999994
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.77 E-value=5.3e-19 Score=126.92 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=68.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH--------
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA-------- 72 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------- 72 (135)
.+||+++|++|||||||+|+|++.... ....++.+.++....... ....+.+|||+|...+....+.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~----~g~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV----GGIPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE----TTEEEEECC--------------------C
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE----CCEEEEEEECCccccchhHHHHHHHHHHhh
Confidence 378999999999999999999986432 222233322221111111 3467899999997665443333
Q ss_pred hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++.+|++++|+|.+++.+... ..|++.+. ..|+++|+||+|.
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl 342 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDL 342 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTS
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCC
Confidence 5778999999999998776544 55666552 3699999999994
No 152
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=1e-17 Score=119.60 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=77.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC---CC---------ccCC-----------------------cceeEEEEEeeee
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA---EE---------YHPT-----------------------QGVRIVECEHSYA 47 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~---~~---------~~~t-----------------------~~~~~~~~~~~~~ 47 (135)
+||+++|+.++|||||+++|++.... .. ...+ +...+..+
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~----- 99 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF----- 99 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE-----
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe-----
Confidence 79999999999999999999865411 00 0011 11111111
Q ss_pred cCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 48 LDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 48 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
......+.+||+||++.|...+..+++.+|++++|+|+++... ....+|+..+... + ..|+++|+||+|..
T Consensus 100 -~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~--~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 100 -STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G--IKHIVVAINKMDLN 170 (434)
T ss_dssp -ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T--CCEEEEEEECTTTT
T ss_pred -ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C--CCeEEEEEEcCcCC
Confidence 1245689999999999998888889999999999999988653 3445555544322 1 24799999999963
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.77 E-value=5.3e-18 Score=124.76 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=81.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC--CCC-----C------ccCCcceeEEE--EEeeee-cCCceEEEEEEecCCCccc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT--TAE-----E------YHPTQGVRIVE--CEHSYA-LDTSKTEIELWDTSGDHKF 66 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~--~~~-----~------~~~t~~~~~~~--~~~~~~-~~~~~~~~~i~d~~g~~~~ 66 (135)
.+|+++|+.++|||||+++|+... ... . .+...|.++.. ....+. .++..+.+++|||||++.|
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 589999999999999999998631 110 0 01112222211 111111 1345689999999999999
Q ss_pred ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
...+..+++.+|++++|+|+++..++.....|..... .++|+++|+||+|..
T Consensus 87 ~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 87 SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLP 138 (600)
T ss_dssp HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTST
T ss_pred HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCcc
Confidence 9999999999999999999999888888887766542 268999999999954
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.77 E-value=8.4e-18 Score=119.14 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=80.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC--------CCCCC-------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL--------TTAEE-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF 66 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 66 (135)
.+||+++|++++|||||+++|++. .+... .+.+.|.++........ .....+.+||+||++.|
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE--TAKRHYSHVDCPGHADY 88 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE--CSSCEEEEEECCCSGGG
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec--cCCeEEEEEECCChHHH
Confidence 479999999999999999999873 11100 00112222111111111 24568999999999999
Q ss_pred ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCCC
Q psy10117 67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPGR 123 (135)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~ 123 (135)
......+++.+|++++|+|+++... ....+|+..+... ++| +++++||+|..
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFMNKVDMV 141 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----TCCCEEEEEECGGGC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEECcccc
Confidence 8888899999999999999988654 4456666655432 567 89999999953
No 155
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.76 E-value=2.7e-19 Score=129.19 Aligned_cols=112 Identities=14% Similarity=0.049 Sum_probs=78.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIF 82 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (135)
.+|+++|+.++|||||+++|.+........+++..+...+.... ....+++|||||++.|..++...++.+|++++
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~----~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET----ENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT----TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE----CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 57999999999999999999976544333333332222222211 23478999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 83 VFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|+|+++........ ++..+.. .+.|+++++||+|..
T Consensus 81 VVda~~g~~~qT~e-~l~~~~~----~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 81 VVAADDGVMPQTIE-AIQHAKA----AQVPVVVAVNKIDKP 116 (501)
T ss_dssp EEETTTBSCTTTHH-HHHHHHH----TTCCEEEEEECSSSS
T ss_pred EeecccCccHHHHH-HHHHHHh----cCceEEEEEEecccc
Confidence 99998843221122 2222211 268999999999953
No 156
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.76 E-value=9.2e-19 Score=128.89 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=79.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC----ccCCcceeEEEEEeee---e---c----CCceEEEEEEecCCCccccc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE----YHPTQGVRIVECEHSY---A---L----DTSKTEIELWDTSGDHKFES 68 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~~---~---~----~~~~~~~~i~d~~g~~~~~~ 68 (135)
++|+++|+.++|||||+++|.+...... ..++++..+..+.... . . +.....+++|||||++.|..
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~ 85 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT 85 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHH
Confidence 6899999999999999999987644321 2234444332221100 0 0 01123699999999999999
Q ss_pred chHHhhccCcEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 69 VWPAFQRDVHGIIFVFNSGV---PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++..+++.+|++++|+|+++ +++++.+..+ .. .+.|+++++||+|.
T Consensus 86 ~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~----~~vPiIVViNKiDl 134 (594)
T 1g7s_A 86 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM----YRTPFVVAANKIDR 134 (594)
T ss_dssp SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH----TTCCEEEEEECGGG
T ss_pred HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH----cCCeEEEEeccccc
Confidence 99999999999999999998 5566544422 11 26899999999995
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.76 E-value=8.6e-18 Score=122.39 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=80.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCC-----------------CCC-------ccCCcceeEEEEEeeeecCCceEEEEE
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTT-----------------AEE-------YHPTQGVRIVECEHSYALDTSKTEIEL 57 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~-----------------~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i 57 (135)
..+|+++|++++|||||+++|+...- ..+ ...|+......+.. ....+++
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~------~~~~i~l 86 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY------KDYLINL 86 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE------TTEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe------CCEEEEE
Confidence 35899999999999999999962110 000 11122222222222 4678999
Q ss_pred EecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 58 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|||||++.|......+++.+|++++|+|.++..+......|. .+.. .++|+++|+||+|..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 87 LDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRD 147 (528)
T ss_dssp ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSC
T ss_pred EECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCc
Confidence 999999999999999999999999999999887776666553 3322 268999999999953
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.76 E-value=2e-18 Score=121.03 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=78.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEE
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFV 83 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (135)
+|+++|++++|||||+++|+ ....|++..+..+.. ....+++||+||++.|.......++.+|++++|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~------~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDK------EGRNMVFVDAHSYPKTLKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECS------SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEec------CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence 89999999999999999998 233455554443332 445799999999999988888889999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCceE-EEEEe-cCCC
Q psy10117 84 FNSGVPGHISELLLFYDYFVTQSDLNNHKC-LLIDN-VKPG 122 (135)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~n-K~D~ 122 (135)
+| + ...+.+..+|+..+... +.|. +++.| |+|.
T Consensus 91 vd-~-~g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 91 IP-P-QGLDAHTGECIIALDLL----GFKHGIIALTRSDST 125 (370)
T ss_dssp EC-T-TCCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS
T ss_pred Ec-C-CCCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC
Confidence 99 4 44566677777665432 4566 88888 9997
No 159
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.76 E-value=6.6e-18 Score=123.03 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=76.0
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCC--------------------CccCCcceeEEEEEeeeecCCceEEEEEEecC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAE--------------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~ 61 (135)
..+|+++|++++|||||+++|+...-.. ....+.|.+...... ........+++||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~--~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVM--QFPYHDCLVNLLDTP 90 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEE--EEEETTEEEEEECCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEE--EEEECCeEEEEEECC
Confidence 4689999999999999999998631100 001112221110000 111145789999999
Q ss_pred CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|++.|......+++.+|++++|+|+++.... ....++..+ ...++|+++|+||+|..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~----~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT----RLRDTPILTFMNKLDRD 147 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH----TTTTCCEEEEEECTTSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH----HHcCCCEEEEEcCcCCc
Confidence 9999998889999999999999999876432 222333332 22478999999999954
No 160
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.76 E-value=4.2e-18 Score=121.79 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=76.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-------------------------------CCccCCcceeEEEEEeeeecCC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-------------------------------EEYHPTQGVRIVECEHSYALDT 50 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (135)
.+||+++|.+++|||||+++|+...-. .+..+.++.+.....+. .
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~----~ 92 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE----T 92 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe----c
Confidence 379999999999999999999653210 00112222222222221 1
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcch---HH---HHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGH---IS---ELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
....+.+||+||++.|...+..+++.+|++++|+|+++... |+ ...+.+..+.. .+.| +++|+||+|.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCC
Confidence 45689999999999999989999999999999999988632 22 22333333221 1455 9999999996
No 161
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=9.3e-18 Score=114.76 Aligned_cols=109 Identities=21% Similarity=0.126 Sum_probs=74.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-C--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCc-c--------cccch
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-E--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH-K--------FESVW 70 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-~--------~~~~~ 70 (135)
.+|+++|++|||||||++++++..... . ...|... ...+ . . .....+.+|||||.+ . +....
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~-~~gi-~--~--~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR-IVGI-H--T--EGAYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC-EEEE-E--E--ETTEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceee-EEEE-E--E--ECCeeEEEEECcCCCccchhhHHHHHHHHH
Confidence 479999999999999999999876431 1 1112111 1111 1 1 135689999999987 2 33344
Q ss_pred HHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 71 PAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
..+++.+|++++|+|.++ +.....|+.+.... .+.|+++++||+|..
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNV 129 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTC
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccC
Confidence 566789999999999976 44445565554332 368999999999964
No 162
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.76 E-value=1.1e-17 Score=117.98 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=73.3
Q ss_pred CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCC----------cchHHHHHHHHHHH
Q psy10117 33 PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGV----------PGHISELLLFYDYF 102 (135)
Q Consensus 33 ~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i 102 (135)
+|+|+....+.. ..+.+++||++|+++++..|..||++++++|||||+++ .++|+++..|+..+
T Consensus 203 ~TiGi~~~~~~~------~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i 276 (402)
T 1azs_C 203 LTSGIFETKFQV------DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276 (402)
T ss_dssp CCCSEEEEEEEE------TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHH
T ss_pred ceeeeEEEEeec------CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHH
Confidence 466766544444 35899999999999999999999999999999999999 88999999999999
Q ss_pred HhccCCCCceEEEEEecCCC
Q psy10117 103 VTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 103 ~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+.....++|++|||||+|.
T Consensus 277 ~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 277 WNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp HTCTTCSSCCEEEEEECHHH
T ss_pred HhcccCCCCeEEEEEEChhh
Confidence 88765568999999999993
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.76 E-value=1.1e-18 Score=125.62 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=65.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC--CCCC-------------------------------CccCCcceeEEEEEeeeec
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL--TTAE-------------------------------EYHPTQGVRIVECEHSYAL 48 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 48 (135)
.+||+++|+.++|||||+++|+.. .+.. ....|++..+..+..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~---- 118 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET---- 118 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC----
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec----
Confidence 369999999999999999999742 1110 012233322222222
Q ss_pred CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCc---chHHHHHHHHHHHHhccCCCCce-EEEEEecCCCC
Q psy10117 49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVP---GHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPGR 123 (135)
Q Consensus 49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~ 123 (135)
....+.|||+||++.|...+...++.+|++++|+|+++. .+|+....|.+.+..... .++| +++++||+|..
T Consensus 119 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 --EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGINHLVVVINKMDEP 194 (467)
T ss_dssp --SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCSSEEEEEECTTST
T ss_pred --CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCCCEEEEEEECccCC
Confidence 357899999999999998888899999999999999986 344322222222211111 2566 99999999963
No 164
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=1.8e-17 Score=117.52 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=76.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC---CCCCccC--CcceeEEEEEeeee-----------cC--C----ceEEEEEEe
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT---TAEEYHP--TQGVRIVECEHSYA-----------LD--T----SKTEIELWD 59 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~~-----------~~--~----~~~~~~i~d 59 (135)
.+||+++|+.++|||||+++|.+.. +..+..+ |++..+........ .+ + ....+.+||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 4799999999999999999998542 2223333 55554443333110 01 1 137899999
Q ss_pred cCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+||++.|.......+..+|++++|+|+++........+++..+... ...|+++++||+|.
T Consensus 88 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 88 SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDL 147 (408)
T ss_dssp CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTS
T ss_pred CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCC
Confidence 9999998877777778899999999998643222222222222211 13589999999995
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.75 E-value=1.1e-17 Score=116.93 Aligned_cols=110 Identities=23% Similarity=0.190 Sum_probs=71.9
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCC--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCc---------ccccchHHh
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTAE--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH---------KFESVWPAF 73 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~---------~~~~~~~~~ 73 (135)
|+++|++|||||||++++.+..... ...+|.+.....+.. ....+.+|||+|.- .|+..+ ..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~------~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI------NNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE------TTEEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE------CCEEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 8999999999999999999876532 223333332222222 22578999999962 122222 24
Q ss_pred hccCcEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPG--HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+..+|.+++|+|++++. ..+.+..|.+.+... ...+.|+++|+||+|.
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~~~p~ilV~NK~Dl 304 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVSGKPILVTLNKIDK 304 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCCSCCEEEEEECGGG
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcCCCCEEEEEECCCC
Confidence 67899999999999877 556666565544332 2347899999999994
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.6e-18 Score=126.26 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=76.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCC---------------------------------ccCCcceeEEEEEeeeec
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEE---------------------------------YHPTQGVRIVECEHSYAL 48 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~~~ 48 (135)
.+||+++|++++|||||+++|++....-. ...|+...+..+..
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~---- 242 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST---- 242 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC----
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec----
Confidence 47999999999999999999987532110 01122222222222
Q ss_pred CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HI---SELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
....+.||||||++.|......+++.+|++++|+|+++.. +| ......+..+. . ....|+++|+||+|.
T Consensus 243 --~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~--lgi~~iIVVvNKiDl 317 (611)
T 3izq_1 243 --HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-S--LGIHNLIIAMNKMDN 317 (611)
T ss_dssp --SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-T--TTCCEEEEEEECTTT
T ss_pred --CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-H--cCCCeEEEEEecccc
Confidence 4568999999999999988888999999999999998742 11 11222222221 1 223569999999995
Q ss_pred C
Q psy10117 123 R 123 (135)
Q Consensus 123 ~ 123 (135)
.
T Consensus 318 ~ 318 (611)
T 3izq_1 318 V 318 (611)
T ss_dssp T
T ss_pred c
Confidence 3
No 167
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=5.9e-18 Score=121.53 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=75.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCC----------Ccccccch
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG----------DHKFESVW 70 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 70 (135)
.+||+++|.+++|||||++++++.... ....++.+.+........ ....+++||||| ++.|....
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~----~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY----NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE----TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE----CCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 379999999999999999999976421 111222222211111211 334899999999 67776665
Q ss_pred HH-hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 71 PA-FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 71 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.. +++.+|++++|+|+++..+ +....|+..+.. .+.|+++|+||+|.
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl 318 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDA 318 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhc
Confidence 54 7789999999999987543 333455555543 36899999999994
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.75 E-value=1.2e-17 Score=118.17 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=77.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC-------CCC-------CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT-------TAE-------EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
.+||+++|+.++|||||+++|++.. +.. ..+...|.+....... .+.....+.+||+||++.|.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~--~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE--YSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEE--EECSSCEEEEEECSSHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEE--eccCCeEEEEEECCChHHHH
Confidence 4799999999999999999998741 110 0011222222111111 11245689999999999998
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
.....+++.+|++++|+|+++........ ++..+.. .++| +++++||+|.
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~----~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ----IGVEHVVVYVNKADA 131 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCCEEEEEECGGG
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCeEEEEEECccc
Confidence 88888999999999999999865433333 3343322 2577 7899999995
No 169
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.75 E-value=2.6e-17 Score=116.77 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=77.9
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC---CCCCccC--CcceeEEEEEeeee-----------cC--C----ceEEEEEEe
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT---TAEEYHP--TQGVRIVECEHSYA-----------LD--T----SKTEIELWD 59 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~~-----------~~--~----~~~~~~i~d 59 (135)
.++|+++|+.++|||||+++|++.. ...+..+ |+...+........ .+ + ....+++||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 4799999999999999999998542 2223333 55544443333110 00 1 137899999
Q ss_pred cCCCcccccchHHhhccCcEEEEEEeCCCcc----hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPG----HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+||++.|.......+..+|++++|+|+++.. +.+.+..| ... + ..|+++|+||+|.
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~-~--~~~iivviNK~Dl 149 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII-G--QKNIIIAQNKIEL 149 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH-T--CCCEEEEEECGGG
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-C--CCcEEEEEECccC
Confidence 9999998877777788899999999998643 34433322 211 1 3589999999995
No 170
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.74 E-value=1.8e-17 Score=124.13 Aligned_cols=111 Identities=22% Similarity=0.156 Sum_probs=80.8
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC--CC------C------------CccCCcceeEEEEEeeeecCCceEEEEEEecC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT--TA------E------------EYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~--~~------~------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~ 61 (135)
..+|+++|+.|+|||||+++|+... .. . ....|+......+.. ....+++||||
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~------~~~~i~liDTP 85 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW------KDHRINIIDTP 85 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE------TTEEEEEECCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE------CCeEEEEEECc
Confidence 3689999999999999999998421 10 0 112333322222222 35789999999
Q ss_pred CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|+..|...+..+++.+|++++|+|.++..++.....|.. +.. .+.|+++|+||+|..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKT 142 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTST
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999999888777666654 322 268999999999953
No 171
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.74 E-value=1.5e-17 Score=126.69 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=84.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC------------CCC------CccCCcceeEEEEEeee----------ecCCceEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT------------TAE------EYHPTQGVRIVECEHSY----------ALDTSKTE 54 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~------------~~~------~~~~t~~~~~~~~~~~~----------~~~~~~~~ 54 (135)
.||+|+|+.++|||||+++|+... +.+ ....|+......+.+.. ..++....
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 589999999999999999998641 100 01123332222222221 12345789
Q ss_pred EEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+++|||||+..|...+..+++.+|++++|+|+++..++.....|.... . .+.|+++|+||+|.
T Consensus 100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDR 162 (842)
T ss_dssp EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHH
T ss_pred EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCc
Confidence 999999999999999999999999999999999998887776665433 2 26899999999994
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.74 E-value=1.4e-17 Score=113.33 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=74.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC------ccCCc-----------------ceeEEEE-----------------
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE------YHPTQ-----------------GVRIVEC----------------- 42 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~------~~~t~-----------------~~~~~~~----------------- 42 (135)
++|+++|.+|||||||+++|++..+.+. ..|+. |..+.+.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~ 106 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhccc
Confidence 5899999999999999999999876321 11210 0000000
Q ss_pred ---------EeeeecCCceEEEEEEecCCCc-------------ccccchHHhhccCcEEE-EEEeCCCcchHHHHHHHH
Q psy10117 43 ---------EHSYALDTSKTEIELWDTSGDH-------------KFESVWPAFQRDVHGII-FVFNSGVPGHISELLLFY 99 (135)
Q Consensus 43 ---------~~~~~~~~~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~ 99 (135)
..... ......+.+|||||.. .+..+...|++.+++++ +|+|.++..+......|+
T Consensus 107 ~~gi~~~~~~~~~~-~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~ 185 (299)
T 2aka_B 107 NKGISPVPINLRVY-SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp TTCCCSCCEEEEEE-ETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred CCCccccceEEEEe-CCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence 00000 0113689999999953 34556677888888776 799998765544444555
Q ss_pred HHHHhccCCCCceEEEEEecCCC
Q psy10117 100 DYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 100 ~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+.. .+.|+++|+||+|.
T Consensus 186 ~~~~~----~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 186 KEVDP----QGQRTIGVITKLDL 204 (299)
T ss_dssp HHHCT----TCSSEEEEEECGGG
T ss_pred HHhCC----CCCeEEEEEEcccc
Confidence 55532 36899999999994
No 173
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.74 E-value=4.7e-18 Score=122.74 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=75.6
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC-------CCCCcc--CCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHH
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT-------TAEEYH--PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPA 72 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~-------~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~ 72 (135)
.++|+++|+.++|||||+++|.+.. ...+.. .|+...+..+.. ....+.+||+||++.|......
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~------~~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL------ENYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE------TTEEEEECCCSSHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE------CCEEEEEEECCChHHHHHHHHH
Confidence 4799999999999999999999865 111111 233332223322 3478999999999999888888
Q ss_pred hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 73 FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+++.+|++++|+|+++... ....+++..+.. .++|.++|+||+|..
T Consensus 93 ~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~----~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPK-TQTGEHMLILDH----FNIPIIVVITKSDNA 138 (482)
T ss_dssp HTTSCCEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCBCEEEECTTSS
T ss_pred HHhhCCEEEEEEecCCCcc-HHHHHHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999999999987321 112222222222 257889999999953
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.73 E-value=6.8e-18 Score=121.24 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=78.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC--CCC-------------------------------CccCCcceeEEEEEeeeec
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT--TAE-------------------------------EYHPTQGVRIVECEHSYAL 48 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~--~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 48 (135)
.++|+++|.+++|||||+++|++.. +.. ....|+...+..+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~---- 82 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET---- 82 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC----
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec----
Confidence 3799999999999999999998641 110 012333333333322
Q ss_pred CCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hHH---HHHHHHHHHHhccCCCCc-eEEEEEecCC
Q psy10117 49 DTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HIS---ELLLFYDYFVTQSDLNNH-KCLLIDNVKP 121 (135)
Q Consensus 49 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~-p~ivv~nK~D 121 (135)
....+.+||+||++.|......+++.+|++++|+|+++.. +|+ ...+++..+.. .++ ++++|+||+|
T Consensus 83 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~D 156 (458)
T 1f60_A 83 --PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMD 156 (458)
T ss_dssp --SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGG
T ss_pred --CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccc
Confidence 4578999999999999988889999999999999998752 332 33333333322 145 4999999999
Q ss_pred CC
Q psy10117 122 GR 123 (135)
Q Consensus 122 ~~ 123 (135)
..
T Consensus 157 l~ 158 (458)
T 1f60_A 157 SV 158 (458)
T ss_dssp GG
T ss_pred cc
Confidence 63
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.72 E-value=1.6e-17 Score=107.72 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=66.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc----------cccchHH
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----------FESVWPA 72 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~ 72 (135)
.+|+++|++|||||||++++++..+...+.++.|........... . .+.+||+||... ++.....
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~---~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA---D--GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE---T--TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec---C--CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 589999999999999999999876444445555543322111111 1 478999999742 2333344
Q ss_pred hh---ccCcEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 73 FQ---RDVHGIIFVFNSGVPGHIS--ELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 73 ~~---~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++ ..++++++++|++++.++. .+..|+.. .+.|+++++||+|.
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAVLVLLTKADK 149 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGG
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCeEEEEecccC
Confidence 55 4689999999998876653 23444432 26899999999994
No 176
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=7.5e-17 Score=120.78 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=79.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcC--CCCC-----------C-------ccCCcceeEEEEEeeeecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL--TTAE-----------E-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~--~~~~-----------~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g 62 (135)
.+|+++|.+|+|||||+++|+.. .... + ...|+......+.. ....+++|||||
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~------~~~~i~liDTPG 84 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW------EGHRVNIIDTPG 84 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE------TTEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE------CCeeEEEEECcC
Confidence 68999999999999999999852 2110 0 11122211111111 357899999999
Q ss_pred CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+..|......+++.+|++++|+|.++..++.....|.. +.. .+.|+++|+||+|..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKL 140 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTST
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCcc
Confidence 99999999999999999999999998877766665543 332 268999999999953
No 177
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.71 E-value=3.8e-17 Score=113.80 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=64.0
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCC----------CcchHHHHHHHHHHHHhccCCCCceEEEEEecC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSG----------VPGHISELLLFYDYFVTQSDLNNHKCLLIDNVK 120 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 120 (135)
..+.+++||++|+++++..|..||+++++++||||++ +.++|+++..|++.+.+.....+.|++|||||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 788999999999999876555689999999999
Q ss_pred CC
Q psy10117 121 PG 122 (135)
Q Consensus 121 D~ 122 (135)
|.
T Consensus 261 DL 262 (354)
T 2xtz_A 261 DI 262 (354)
T ss_dssp HH
T ss_pred ch
Confidence 93
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.71 E-value=5.8e-17 Score=111.12 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=44.9
Q ss_pred EEEEEEecCCCcc-------------cccchHHhhccCcEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCceEEEEEe
Q psy10117 53 TEIELWDTSGDHK-------------FESVWPAFQRDVHGIIFVFNSGVPGHI-SELLLFYDYFVTQSDLNNHKCLLIDN 118 (135)
Q Consensus 53 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~n 118 (135)
..+.+|||||... +......+++++|++++|+|.++.... .....++..+. ..+.|+++|+|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~N 206 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVIT 206 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEc
Confidence 5799999999753 445566788999999999997543311 11123333332 13689999999
Q ss_pred cCCC
Q psy10117 119 VKPG 122 (135)
Q Consensus 119 K~D~ 122 (135)
|+|.
T Consensus 207 K~Dl 210 (315)
T 1jwy_B 207 KLDL 210 (315)
T ss_dssp CTTS
T ss_pred Cccc
Confidence 9995
No 179
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.71 E-value=3.2e-17 Score=119.96 Aligned_cols=115 Identities=22% Similarity=0.206 Sum_probs=79.3
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC---CCccCCcceeEEEEEeeee--------------------------------
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA---EEYHPTQGVRIVECEHSYA-------------------------------- 47 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~-------------------------------- 47 (135)
.+|+|+|.+|+|||||+|+|++.... ....++... .........
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 68999999999999999999998753 222222211 001100000
Q ss_pred ---cCC-ceEEEEEEecCCCcc-----------cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce
Q psy10117 48 ---LDT-SKTEIELWDTSGDHK-----------FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK 112 (135)
Q Consensus 48 ---~~~-~~~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 112 (135)
.+. ....+.+|||||... |......++..+|++++|+|.++.........|+..+.. ...|
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~p 220 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDK 220 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGG
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCC
Confidence 000 003589999999764 445666788999999999999886666777788777643 2579
Q ss_pred EEEEEecCCC
Q psy10117 113 CLLIDNVKPG 122 (135)
Q Consensus 113 ~ivv~nK~D~ 122 (135)
+++|+||+|.
T Consensus 221 vilVlNK~Dl 230 (550)
T 2qpt_A 221 IRVVLNKADM 230 (550)
T ss_dssp EEEEEECGGG
T ss_pred EEEEEECCCc
Confidence 9999999995
No 180
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.71 E-value=6.5e-17 Score=112.95 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=73.1
Q ss_pred HHHHhcCCCCCC-------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCC---
Q psy10117 19 ANALCDLTTAEE-------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGV--- 88 (135)
Q Consensus 19 i~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~--- 88 (135)
+.++....+.++ ..+|+|+....+.. ..+.+++||++|++.++..|..+|++++++|||||+++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~------~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq 239 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGIHEYDFEI------KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQ 239 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEE------TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTC
T ss_pred HHHHhcCCCCCChhhhhhccCCccceEEEEeee------CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccc
Confidence 445555444433 44677876655554 46899999999999999999999999999999999999
Q ss_pred -------cchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 89 -------PGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 89 -------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+|.+...|+..+.+.....+.|++|++||+|.
T Consensus 240 ~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL 280 (362)
T 1zcb_A 240 VLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280 (362)
T ss_dssp EETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred cccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhh
Confidence 7799999999999987765568999999999993
No 181
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=1.4e-16 Score=113.86 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=68.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccc------------
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESV------------ 69 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------------ 69 (135)
+||+++|++|||||||++++++.... ....++.+.+........ ....+.+||++|..+....
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~----~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI----DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE----TTEEEEESSCSCC-----------CCSCCHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE----CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 79999999999999999999987542 111122111111111211 2336899999997543221
Q ss_pred hHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+++.++++++++|.++..+.... ++...... .+.|+++|+||+|.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDL 304 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccC
Confidence 12467789999999999987665542 22222222 26899999999995
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.70 E-value=2.1e-16 Score=110.39 Aligned_cols=115 Identities=12% Similarity=0.060 Sum_probs=74.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCccee---------------EEEE--------------------------
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVR---------------IVEC-------------------------- 42 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~---------------~~~~-------------------------- 42 (135)
+|+|+|++|||||||++++++..+.+.....+... +..+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRET 115 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhc
Confidence 79999999999999999999977632221111100 0000
Q ss_pred -----------EeeeecCCceEEEEEEecCCCccc-------------ccchHHhhccCcEEEEEEeCCCcchHHHHHHH
Q psy10117 43 -----------EHSYALDTSKTEIELWDTSGDHKF-------------ESVWPAFQRDVHGIIFVFNSGVPGHISELLLF 98 (135)
Q Consensus 43 -----------~~~~~~~~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 98 (135)
..... .+....+.+||+||...+ ..+...|+++++++++++|..+..... ..|
T Consensus 116 g~~~~~s~~~i~l~i~-~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 116 GRSKAISSVPIHLSIY-SPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp CTTCCCCCSCEEEEEE-ETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred CCCCCcccceEEEEEe-CCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 00000 012346899999998776 556777899999999999876554332 334
Q ss_pred HHHHHhccCCCCceEEEEEecCCC
Q psy10117 99 YDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 99 ~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+..+..... .+.|+++|+||+|.
T Consensus 193 ~~l~~~~~~-~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 193 IKISREVDP-SGDRTFGVLTKIDL 215 (360)
T ss_dssp HHHHHHSCT-TCTTEEEEEECGGG
T ss_pred HHHHHHhcc-cCCCEEEEEeCCcc
Confidence 433332222 36799999999993
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=3.5e-16 Score=117.34 Aligned_cols=116 Identities=17% Similarity=0.035 Sum_probs=79.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC--CCC-----------C-------ccCCcceeEEEEEeee-ecCCceEEEEEEecC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT--TAE-----------E-------YHPTQGVRIVECEHSY-ALDTSKTEIELWDTS 61 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~--~~~-----------~-------~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~ 61 (135)
.+|+++|..++|||||+++|+... ... + ...|+......+.... ..++..+.++|||||
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP 90 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP 90 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence 589999999999999999997431 110 0 1112221111111110 012345899999999
Q ss_pred CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
|+..|......+++.+|++++|+|.++.........|. .+.. .++|+++|+||+|..
T Consensus 91 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 91 GHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRM 147 (704)
T ss_pred CccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCcc
Confidence 99999999999999999999999999876655544443 2221 268999999999943
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.68 E-value=1.6e-16 Score=119.07 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=51.4
Q ss_pred EEEEEEecCCCcc---cccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 53 TEIELWDTSGDHK---FESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 53 ~~~~i~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+.+|||||... .......+++++|++++|+|.+++.+......|...+.. .+.|+++|+||+|.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECccc
Confidence 3689999999654 344556788999999999999988888777777655422 25689999999994
No 185
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.68 E-value=1.9e-16 Score=122.69 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=77.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCC-------CC-----C--CccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLT-------TA-----E--EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~-------~~-----~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
.+||+++|+.++|||||+++|.+.. +. + ..+.+.|.++..... ..+.....+++|||||++.|.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v--~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHV--EYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCE--EEECSSCEEEEEECCCHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEE--EEcCCCEEEEEEECCChHHHH
Confidence 3799999999999999999998741 00 0 112233332211111 112245789999999999998
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCCCC
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKPGR 123 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~ 123 (135)
.....+++.+|++++|+|+++... .+..+|+..+... ++| +++++||+|..
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l----gIP~IIVVINKiDLv 425 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV----GVPYIIVFLNKCDMV 425 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH----TCSCEEEEEECCTTC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc----CCCeEEEEEeecccc
Confidence 888889999999999999998653 3344555544332 567 89999999963
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=1.9e-16 Score=111.91 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=48.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC------ccCCcceeEEEEEeee--------------ecCCceEEEEEEecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE------YHPTQGVRIVECEHSY--------------ALDTSKTEIELWDTSG 62 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~------~~~t~~~~~~~~~~~~--------------~~~~~~~~~~i~d~~g 62 (135)
+||+++|.++||||||++++++...... ..++.+..+.....+. ..+...+.+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763211 1223332211111000 0111247899999999
Q ss_pred Ccc----cccchH---HhhccCcEEEEEEeCCCc
Q psy10117 63 DHK----FESVWP---AFQRDVHGIIFVFNSGVP 89 (135)
Q Consensus 63 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 89 (135)
... .+.+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 232333 346899999999999875
No 187
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=2.2e-15 Score=105.00 Aligned_cols=88 Identities=23% Similarity=0.128 Sum_probs=57.0
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCC-c-cCCcceeEEEEEeeee--------cC---CceEEEEEEecCCCcccc
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEE-Y-HPTQGVRIVECEHSYA--------LD---TSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~--------~~---~~~~~~~i~d~~g~~~~~ 67 (135)
|.++|+++|.+|||||||++++++..+... + ..|++.+.......-. .. .....+++||+||..++.
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 678999999999999999999998663211 1 1233332222222100 00 012579999999987653
Q ss_pred ----cc---hHHhhccCcEEEEEEeCCC
Q psy10117 68 ----SV---WPAFQRDVHGIIFVFNSGV 88 (135)
Q Consensus 68 ----~~---~~~~~~~~~~~i~v~d~~~ 88 (135)
.+ ...+++++|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2335789999999999986
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.67 E-value=7e-16 Score=115.14 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=79.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC-------------ccC---CcceeEEEEEeeeecCCceEEEEEEecCCCccc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE-------------YHP---TQGVRIVECEHSYALDTSKTEIELWDTSGDHKF 66 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~-------------~~~---t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 66 (135)
.+|+++|++|+|||||+++|++...... +.+ ..+.++........ ...+.+++||+||++.|
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~--~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL--FRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE--ETTEEEEEEECCCSGGG
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe--eCCEEEEEEeCCCccch
Confidence 4899999999999999999995432210 000 11222211111111 14678999999999999
Q ss_pred ccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 67 ESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
......+++.+|++++|+|.++..... ...++..+.. .+.|+++|+||+|..
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 999999999999999999987764432 3345554433 268999999999964
No 189
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.66 E-value=2.6e-17 Score=121.32 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=59.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCC---C----------------------------CccCCcceeEEEEEeeeecCC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTA---E----------------------------EYHPTQGVRIVECEHSYALDT 50 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~---~----------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (135)
.+||+++|.+++|||||+++|+...-. . +..++++.+.....+ ..
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~----~~ 252 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF----ES 252 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE----Ee
Confidence 368999999999999999999642100 0 001111111111111 11
Q ss_pred ceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCce-EEEEEecCCC
Q psy10117 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG---HI---SELLLFYDYFVTQSDLNNHK-CLLIDNVKPG 122 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 122 (135)
....+.||||||++.|......+++.+|++++|+|+++.. .+ ......+..+.. . ++| +++|+||+|.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l---gip~iIvviNKiDl 327 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L---GISEIVVSVNKLDL 327 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S---SCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c---CCCeEEEEEecccc
Confidence 3468899999999999988888999999999999998643 11 112222222221 1 454 9999999995
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=3.5e-15 Score=105.88 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=66.1
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCC-CCc-------cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc-----
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTA-EEY-------HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE----- 67 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~-~~~-------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----- 67 (135)
+.++|+|+|++|||||||++.|++..++ ... .++.+... ........+....+++||++|...+.
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~--i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ--SKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEE--EECC------CEEEEEEECC-----------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeee--EEEEEecCCcccceeeeechhhhhhccchhh
Confidence 3678999999999999999999987663 111 12222211 11111223345689999999976531
Q ss_pred --cc------------------hHHhhccCcEEEEEEeCCCc-chHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 68 --SV------------------WPAFQRDVHGIIFVFNSGVP-GHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 68 --~~------------------~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.+ ...++.++++.+++|+.... .+++.+. .|+..+. ...|+++|+||+|.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dl 179 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADT 179 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccC
Confidence 11 11234456655566665543 4566664 6777773 26899999999995
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.59 E-value=1.8e-15 Score=103.49 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=60.2
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcC-CCCCCc--------cCCcceeEEEEEeeeecCCceEEEEEEecCCC-------c
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDL-TTAEEY--------HPTQGVRIVECEHSYALDTSKTEIELWDTSGD-------H 64 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------~ 64 (135)
+.++|+++|++|+|||||++++.+. .++... .++.......+. ....+....+++||++|. +
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~--~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVE--IEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEE--EC---CCEEEEEEEEC----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEE--ecCCCcccCcchhhhhhhhhhcCcHH
Confidence 3589999999999999999998875 443322 122221111111 122345678999999998 6
Q ss_pred ccccchH-------HhhccCc-------------EEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 65 KFESVWP-------AFQRDVH-------------GIIFVFNSGVPGHISELL-LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 65 ~~~~~~~-------~~~~~~~-------------~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.++.+.. .+++..+ +++++.+.+ ..+++.+. .++..+ . ...|+++|+||+|.
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~~~l~~l---~--~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI---H--NKVNIVPVIAKADT 167 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHHHHHHHH---T--TTSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHHHHHHHH---H--hcCCEEEEEEeCCC
Confidence 6666655 5555433 333333322 22455543 333333 2 25799999999995
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.59 E-value=7.3e-15 Score=102.42 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=67.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCc------cCCcc----------------------------------------
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEY------HPTQG---------------------------------------- 36 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~------~~t~~---------------------------------------- 36 (135)
.+|+|+|.++||||||+++|++..+.+.. .|+..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 58999999999999999999998763211 12100
Q ss_pred ---eeEEEEEeeeecCCceEEEEEEecCCCc-------------ccccchHHhhccCcEEEE-EEeCCCcchHHHHHHHH
Q psy10117 37 ---VRIVECEHSYALDTSKTEIELWDTSGDH-------------KFESVWPAFQRDVHGIIF-VFNSGVPGHISELLLFY 99 (135)
Q Consensus 37 ---~~~~~~~~~~~~~~~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~ 99 (135)
........... ......+.+|||||.. .++.+...|+++++.+++ +.|.+..-.-.....++
T Consensus 112 ~~gi~~~~~~~~i~-~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 112 NKGISPVPINLRVY-SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTCCCCCCEEEEEE-ETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred CCCcccCceEEEEe-cCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 00000000000 0123579999999953 344566677777665555 45554322212222344
Q ss_pred HHHHhccCCCCceEEEEEecCCC
Q psy10117 100 DYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 100 ~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+. ..+.|+++|+||+|.
T Consensus 191 ~~~~----~~~~~~i~V~NK~Dl 209 (353)
T 2x2e_A 191 KEVD----PQGQRTIGVITKLDL 209 (353)
T ss_dssp HHHC----TTCTTEEEEEECGGG
T ss_pred HHhC----cCCCceEEEeccccc
Confidence 4432 236899999999994
No 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.57 E-value=1.5e-15 Score=103.82 Aligned_cols=94 Identities=11% Similarity=-0.027 Sum_probs=78.2
Q ss_pred HHHHHHhcCCCC-CCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcc-hHHH
Q psy10117 17 VLANALCDLTTA-EEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPG-HISE 94 (135)
Q Consensus 17 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~ 94 (135)
+++.+++.+.+. ..+.||+|..+. ... ..+ . .+.+||+ +++++.++..+++++|++++|||+++++ ++..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~--~~~--~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~ 103 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTP--DET--G-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYI 103 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EEC--CCS--S-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEE--cCC--C-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHH
Confidence 678888888888 789999996443 332 221 1 7899999 8999999999999999999999999987 7899
Q ss_pred HHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 95 LLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 95 ~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+..|+..+.. .++|+++|+||+|.
T Consensus 104 l~~~l~~~~~----~~~piilv~NK~DL 127 (301)
T 1u0l_A 104 IDKFLVLAEK----NELETVMVINKMDL 127 (301)
T ss_dssp HHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred HHHHHHHHHH----CCCCEEEEEeHHHc
Confidence 9999998754 37899999999995
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.54 E-value=5e-14 Score=99.95 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=76.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC-CCcc-CCcceeEEEEEeeeecCCceEEEEEEecCCCcc----cccchHHh---h
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA-EEYH-PTQGVRIVECEHSYALDTSKTEIELWDTSGDHK----FESVWPAF---Q 74 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~~~~~---~ 74 (135)
.|+++|++|||||||++.+++..+. ..+. .|...+...+.. + ....+.+||++|... +..+...+ .
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~----~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV----S-EEERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC----S-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEe----c-CcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 4789999999999999999987432 1111 122222112221 1 135789999999632 22232333 3
Q ss_pred ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCCC
Q psy10117 75 RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPGR 123 (135)
Q Consensus 75 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~ 123 (135)
..++.+++++|++ ...+.++..|.+++..... +...|.++|+||+|..
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 4799999999998 6778888888887765432 2357899999999953
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.50 E-value=3.3e-13 Score=98.84 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=77.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC-----------------CCC---ccCCcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT-----------------AEE---YHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~-----------------~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 63 (135)
+|.|+|..++|||||..+|+...- ..+ .+...|+++..-.. ........++|.||||+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~--~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVM--QFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEE--EEEETTEEEEEECCCCG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceE--EEEECCEEEEEEeCCCc
Confidence 799999999999999999962110 000 11112221111111 11125679999999999
Q ss_pred cccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCcc
Q psy10117 64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRGD 125 (135)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 125 (135)
..|.......++-+|++++|+|....-.-....-| ..+.+ .++|.+++.||+|....
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccchhc
Confidence 99999999999999999999999876554444445 33322 27899999999995433
No 196
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.47 E-value=4.2e-14 Score=99.52 Aligned_cols=91 Identities=18% Similarity=0.108 Sum_probs=49.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCc--cCCcceeEEEEEeeee---------cC--CceEEEEEEecCCCccccc
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEY--HPTQGVRIVECEHSYA---------LD--TSKTEIELWDTSGDHKFES 68 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~---------~~--~~~~~~~i~d~~g~~~~~~ 68 (135)
.++|+++|.+|||||||++++++....... ..|+..+.......-. .+ .....+.+||+||...+..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 468999999999999999999987543221 1223322222222100 00 0134699999999876543
Q ss_pred -------chHHhhccCcEEEEEEeCCCcchH
Q psy10117 69 -------VWPAFQRDVHGIIFVFNSGVPGHI 92 (135)
Q Consensus 69 -------~~~~~~~~~~~~i~v~d~~~~~s~ 92 (135)
.+..+++++|++++|+|+++.+++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC------
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 345678899999999999875543
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.45 E-value=4.6e-13 Score=93.78 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=70.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCC--ccCCcceeEEEEEeeeecCCceEEEEEEecCCCccc----ccchH---Hh
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEE--YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKF----ESVWP---AF 73 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~~~---~~ 73 (135)
.+|.++|.|+||||||+|+|++...... ...|.......... ....+.+.|+||.-.- ..... ..
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~------~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY------KGAKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE------TTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe------CCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 4799999999999999999998764322 22233332222222 4568899999995321 11112 23
Q ss_pred hccCcEEEEEEeCCCcchHHHHHHHHHHHHhc-cCCCCceEEEEEecCCC
Q psy10117 74 QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQ-SDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~D~ 122 (135)
.+.||++++|+|++++.. .......++... ......|.+++.||+|.
T Consensus 147 i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 578999999999987632 222222222221 12235688899999994
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.45 E-value=4.5e-13 Score=93.76 Aligned_cols=86 Identities=24% Similarity=0.192 Sum_probs=55.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC-CCc-cCCcceeEEEEEeee----------ecC-----CceEEEEEEecCCCcc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA-EEY-HPTQGVRIVECEHSY----------ALD-----TSKTEIELWDTSGDHK 65 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~-~~~-~~t~~~~~~~~~~~~----------~~~-----~~~~~~~i~d~~g~~~ 65 (135)
++|+++|.+|||||||++++++.... ..+ ..|+..+........ ... .....+++||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999986422 111 112222221222110 000 1245799999999876
Q ss_pred cc----cch---HHhhccCcEEEEEEeCCC
Q psy10117 66 FE----SVW---PAFQRDVHGIIFVFNSGV 88 (135)
Q Consensus 66 ~~----~~~---~~~~~~~~~~i~v~d~~~ 88 (135)
+. .+. ..+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 222 234789999999999986
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.40 E-value=4.6e-12 Score=95.32 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=75.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCC--------CC-----C---CccCCcceeEEE--EEeeee---cCCceEEEEEEecCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT--------TA-----E---EYHPTQGVRIVE--CEHSYA---LDTSKTEIELWDTSG 62 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~--------~~-----~---~~~~t~~~~~~~--~~~~~~---~~~~~~~~~i~d~~g 62 (135)
||.|+|+-++|||||..+|+... .. . ..+...|+++.. ....+. .+...+.+++.||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 79999999999999999887211 00 0 012223333322 122111 122468999999999
Q ss_pred CcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 63 DHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
+-.|.......++-+|++++|+|+...-......-| .++.++ ++|.+++.||+|..
T Consensus 95 HvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 95 HVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH----TCCEEEEEECSSST
T ss_pred CcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc----CCCeEEEEcccccc
Confidence 999999999999999999999999876443333333 333222 68999999999943
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.28 E-value=1.4e-12 Score=97.17 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=76.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC--CCCC-----------Cc---cCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc
Q psy10117 4 KILILGPIMAGKTVLANALCDL--TTAE-----------EY---HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE 67 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~--~~~~-----------~~---~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 67 (135)
||.|+|+.++|||||..+|+.. .... ++ +...|+++..-.. ........+++.||||+..|.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~--~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT--SFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCC--CCBCSSCBCCCEECCCSSSTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeE--EEEECCEEEEEEECCCcHHHH
Confidence 6899999999999999998721 1110 00 1111222221111 122355789999999999999
Q ss_pred cchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCCc
Q psy10117 68 SVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGRG 124 (135)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 124 (135)
......++-+|++++|+|+...-.-.....| ..+.++ ++|.+++.||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM----GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH----TCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc----CCCeEEEEecccccc
Confidence 9999999999999999999875433333333 333222 688999999999533
No 201
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.27 E-value=9.3e-12 Score=86.85 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=41.6
Q ss_pred eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+.||||||... ........+|.+++|+|....+.+..+.. ...+.|+++|.||+|.
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADG 229 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCG
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCC
Confidence 46889999999432 23445689999999999876554433221 1124699999999995
No 202
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.25 E-value=9.5e-11 Score=88.38 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=43.1
Q ss_pred EEEEEecCCCcc-------------cccchHHhh-ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEec
Q psy10117 54 EIELWDTSGDHK-------------FESVWPAFQ-RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNV 119 (135)
Q Consensus 54 ~~~i~d~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 119 (135)
.+.++||||-.. ...+...|+ ..+|.+++|+|.++...-.....++..+.. .+.|+++|.||
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlNK 226 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITK 226 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSSEEEEEEC
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCCEEEEEeC
Confidence 477999999433 222334454 478999999999875443333344444421 36899999999
Q ss_pred CCC
Q psy10117 120 KPG 122 (135)
Q Consensus 120 ~D~ 122 (135)
+|.
T Consensus 227 iDl 229 (772)
T 3zvr_A 227 LDL 229 (772)
T ss_dssp TTS
T ss_pred ccc
Confidence 994
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=84.45 Aligned_cols=59 Identities=14% Similarity=0.029 Sum_probs=35.8
Q ss_pred eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+.++||+|... ........+|.+++|+|.+++.....+.. .+ ...|.++|.||+|.
T Consensus 166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl 224 (349)
T 2www_A 166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDG 224 (349)
T ss_dssp TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSG
T ss_pred CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecC
Confidence 45789999999432 12445679999999999887543222211 11 24578999999995
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.22 E-value=6.2e-12 Score=81.90 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=60.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCc------cCCc----------ceeEEEEEee--eec----------CCceEE
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEY------HPTQ----------GVRIVECEHS--YAL----------DTSKTE 54 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~------~~t~----------~~~~~~~~~~--~~~----------~~~~~~ 54 (135)
.+|+++|.+|||||||+++|+........ .+.. +......... ... ......
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 110 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCD 110 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCCC
Confidence 58999999999999999999875321100 0000 1110000000 000 113467
Q ss_pred EEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 55 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+.+||++|+-... ..+....+.+++|+|+.+... ....+.... +.|+++|+||+|.
T Consensus 111 ~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~-------~~~~iiv~NK~Dl 166 (221)
T 2wsm_A 111 LLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEIF-------RVADLIVINKVAL 166 (221)
T ss_dssp EEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHHH-------HTCSEEEEECGGG
T ss_pred EEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhhh-------hcCCEEEEecccC
Confidence 8899999851111 111135788999999876532 111222221 4688999999995
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.18 E-value=1e-13 Score=90.65 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=26.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQG 36 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~ 36 (135)
++|+++|++|||||||+++++...+.....++++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEE
Confidence 6899999999999999999998765443334443
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.16 E-value=7.6e-11 Score=78.63 Aligned_cols=66 Identities=9% Similarity=-0.018 Sum_probs=40.4
Q ss_pred EEEEEEecCCCcccccchH------HhhccCcEEEEEEeCCCcchHHHHH---HHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 53 TEIELWDTSGDHKFESVWP------AFQRDVHGIIFVFNSGVPGHISELL---LFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 53 ~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~---~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
+.+.||||||...+..... ..+.+ +.+++++|.....+..... .+....... .+.|+++|+||+|.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDL 183 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEecccc
Confidence 5799999999876533221 24456 8899999876443322222 111111111 25799999999995
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.13 E-value=3.5e-10 Score=76.17 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=61.3
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcCCCCCC---------ccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc----
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDLTTAEE---------YHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE---- 67 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~---- 67 (135)
|+++++++|++|+|||||++.+++...+.. ...+.... ..............++++|++|-....
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~--~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~ 78 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIK--AIGHVIEEGGVKMKLTVIDTPGFGDQINNEN 78 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCC--EEEESCC----CCEEEEECCCC--CCSBCTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeee--eeEEEeecCCCcCCceEEechhhhhhcccHH
Confidence 689999999999999999999998654321 00111101 111111222234478999998732110
Q ss_pred --cchHH--------h--------------hccCcEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 68 --SVWPA--------F--------------QRDVHGIIFVFNSGVPGHISEL-LLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 68 --~~~~~--------~--------------~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
..... + ...+++.+++.|.... .+... ...+..+.. ..++++|.+|.|
T Consensus 79 ~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~-----~~~vI~Vi~K~D 151 (270)
T 3sop_A 79 CWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK-----VVNIIPVIAKAD 151 (270)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT-----TSEEEEEETTGG
T ss_pred HHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh-----cCcEEEEEeccc
Confidence 00011 0 1135788888885422 22222 334444422 279999999999
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.13 E-value=4.7e-11 Score=82.90 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=38.1
Q ss_pred eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCCC
Q psy10117 52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPGR 123 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 123 (135)
...+.|+||||...+. ....+.+|++++|+|.+....+..+... . .+.|.++|+||+|..
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~------~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKG---L------MEVADLIVINKDDGD 207 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHH---H------HHHCSEEEECCCCTT
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHHh---h------hcccCEEEEECCCCC
Confidence 4689999999965433 2356899999999998765432211111 0 146889999999953
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.12 E-value=3.6e-11 Score=77.64 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=39.4
Q ss_pred CCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHH---HHHhcc-CCCCceEEEEEecC
Q psy10117 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYD---YFVTQS-DLNNHKCLLIDNVK 120 (135)
Q Consensus 61 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~p~ivv~nK~ 120 (135)
+||+..++.|..||+++|++|||+|.+|.+.++ .+.-+. .+.... .+.++|++|++||+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKq 172 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCIS 172 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEES
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCC
Confidence 489999999999999999999999999987654 433332 233332 23589999999996
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=4.5e-10 Score=79.18 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=53.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCC-CCCccC--CcceeEEEEEeee---------ecCCc--eEEEEEEecCCCcc---
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTT-AEEYHP--TQGVRIVECEHSY---------ALDTS--KTEIELWDTSGDHK--- 65 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~-~~~~~~--t~~~~~~~~~~~~---------~~~~~--~~~~~i~d~~g~~~--- 65 (135)
.++.++|++|||||||++.|++... .....| |+..+.......- ..... ...+.+||++|...
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s 100 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS 100 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence 5899999999999999999999654 222222 2222221222210 00011 13689999999432
Q ss_pred ----cccchHHhhccCcEEEEEEeCCC
Q psy10117 66 ----FESVWPAFQRDVHGIIFVFNSGV 88 (135)
Q Consensus 66 ----~~~~~~~~~~~~~~~i~v~d~~~ 88 (135)
........++.+|++++|+|+.+
T Consensus 101 ~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 101 TGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455689999999999864
No 211
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=2.8e-09 Score=75.76 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=34.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccC--CcceeEEEEEeeeecCCceEEEEEEecCCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHP--TQGVRIVECEHSYALDTSKTEIELWDTSGD 63 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~ 63 (135)
++++|+|++|+|||||++.+++......... ..+..................++++|++|-
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 5799999999999999999998753221100 111111111111122223457899999874
No 212
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.98 E-value=9.4e-10 Score=76.26 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=35.5
Q ss_pred eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+.++||+|..... ......+|.+++++|....+....+..++. ..+.+++.||+|.
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~---------~~~~ivvlNK~Dl 205 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAVNKADD 205 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH---------HHCSEEEEECCST
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHh---------ccccEEEEEchhc
Confidence 4678999999964322 234578999999999864432211111111 2355777799994
No 213
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.91 E-value=3.1e-10 Score=76.58 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=43.7
Q ss_pred cCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHH---HHHhcc-CCCCceEEEEEecC-C
Q psy10117 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYD---YFVTQS-DLNNHKCLLIDNVK-P 121 (135)
Q Consensus 60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~p~ivv~nK~-D 121 (135)
.+||+..++.|..||+++|++|||+|.+|.+.++ ...-+. .+.... ...++|++|++||+ |
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQD 259 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQG 259 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESST
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccc
Confidence 4688999999999999999999999999988654 322222 222222 13579999999974 6
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=9.4e-10 Score=77.11 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=60.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcC------CCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcccc--------c
Q psy10117 3 IKILILGPIMAGKTVLANALCDL------TTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFE--------S 68 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~ 68 (135)
.+++++|.+|+|||||+|++.+. .......|..... ........ .+.+.||||-.... .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~-----~~~liDtPG~~~~~~~~~~l~~~ 235 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES-----GATLYDTPGIINHHQMAHFVDAR 235 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST-----TCEEEECCSCCCCSSGGGGSCTT
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC-----CeEEEeCCCcCcHHHHHHHHhHH
Confidence 36899999999999999999986 1111111221111 21221111 27899999953222 1
Q ss_pred chHHhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 69 VWPAFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 69 ~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
....++ +..+.++++++....-.+..+.. ++. ....+.|++++.||.|
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~----l~~~~~~~~~v~~k~d 285 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDY----IKGGRRSFVCYMANEL 285 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEE----EESSSEEEEEEECTTS
T ss_pred HHHHHhcccccCceEEEEcCCceEEECCEEE-EEE----ccCCCceEEEEecCCc
Confidence 122222 57889999998743211111111 111 1123689999999999
No 215
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.81 E-value=1.1e-08 Score=69.95 Aligned_cols=56 Identities=11% Similarity=-0.027 Sum_probs=49.3
Q ss_pred CcccccchHHhhccCcEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 63 DHKFESVWPAFQRDVHGIIFVFNSGVPG-HISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
++++..+...+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDL 122 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccC
Confidence 7788888888999999999999999986 89989999987754 37899999999995
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.81 E-value=2.6e-09 Score=74.88 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=59.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCC-----CccCCcceeEEEEEeeeecCCceEEEEEEecCCCccccc--------c
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAE-----EYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFES--------V 69 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~ 69 (135)
.+++++|.+|+|||||+|++.+..... ...+..+.+.......... .+.++||||-..... .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-----~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-----ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-----SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-----CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 368999999999999999999863211 1112222221111221111 278999999533221 1
Q ss_pred hHHh--hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 70 WPAF--QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 70 ~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+ ....+.++++++....-.+..+.. ++. .. ....|++++.||.|.
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~---l~-~~~~~~~~v~nk~d~ 285 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDY---VS-GGRRAFTCHFSNRLT 285 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEE---EE-SSSEEEEEEECTTSC
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE-EEE---ec-CCCceEEEEecCccc
Confidence 1112 246788888888632211111110 111 11 136899999999993
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.72 E-value=2.8e-09 Score=71.44 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=34.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCcc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDHK 65 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~ 65 (135)
++++++|.+|+|||||+|++.+..... ..++.|.+....... ....+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~-----~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFS-----LENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE-----CTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEE-----eCCCEEEEECCCccc
Confidence 489999999999999999999865432 223333221111111 112678999999553
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.68 E-value=1.3e-07 Score=67.17 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=57.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCccCCc-ceeEEEEEeeeecCCceEEEEEEecCCCcccccchHHhh-----ccC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQ-GVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQ-----RDV 77 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~-----~~~ 77 (135)
.++++|++|+|||||++.+.+...+..-.-.. +..... ..........-.+.+||++|-...+.....++ .+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~-~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce-eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 68999999999999999999865432211111 111000 00011111122578999998532222223332 234
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q psy10117 78 HGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKP 121 (135)
Q Consensus 78 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 121 (135)
+..++ ++..... .-+..+....... +.|+++|.||.|
T Consensus 150 ~~~~~-lS~G~~~---kqrv~la~aL~~~---~~p~~lV~tkpd 186 (413)
T 1tq4_A 150 DFFII-ISATRFK---KNDIDIAKAISMM---KKEFYFVRTKVD 186 (413)
T ss_dssp SEEEE-EESSCCC---HHHHHHHHHHHHT---TCEEEEEECCHH
T ss_pred CCeEE-eCCCCcc---HHHHHHHHHHHhc---CCCeEEEEecCc
Confidence 55554 6654211 1222222222221 579999999988
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.66 E-value=6.5e-08 Score=70.26 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=62.4
Q ss_pred EEEEEECCCCCChHHHHHHHh------cCCCC----CCccCC-----------cceeEEEEEeee-----------ecCC
Q psy10117 3 IKILILGPIMAGKTVLANALC------DLTTA----EEYHPT-----------QGVRIVECEHSY-----------ALDT 50 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~~~-----------~~~~ 50 (135)
..|+++|.+||||||+++.|. +.+.. +.+.+. .+..++...... ....
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~ 181 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999998 32211 111111 012211110000 0001
Q ss_pred ceEEEEEEecCCCccccc-chH---Hh--hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceE-EEEEecCCCC
Q psy10117 51 SKTEIELWDTSGDHKFES-VWP---AF--QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKC-LLIDNVKPGR 123 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~ 123 (135)
..+.+.|+||||...... ... .. +..++.+++|+|....... ......+.. ..|+ .+|.||.|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~-----~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD-----KVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH-----HHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh-----hcCceEEEEeCCccc
Confidence 346789999999653221 111 11 2278999999999775431 122223321 1564 8899999953
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=2.2e-08 Score=67.82 Aligned_cols=56 Identities=30% Similarity=0.354 Sum_probs=33.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 64 (135)
++++++|.+|||||||+|++.+..... ..+..+.+....... . ...+.+|||||-.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~--~---~~~~~l~DtpG~~ 176 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVK--V---GKELELLDTPGIL 176 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE--E---TTTEEEEECCCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEE--e---CCCEEEEECcCcC
Confidence 689999999999999999999865321 112222211111111 1 1258899999954
No 221
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.51 E-value=5.2e-08 Score=70.28 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=60.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCCCCCccCCcceeEEEEEeeeecCCceEEEEEEecCCCc--ccccch--------H
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH--KFESVW--------P 71 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~--~~~~~~--------~ 71 (135)
+.+|+++|.+||||||+.++|....... ..++.+.+...+.. ...+......+||..|.+ +.+..+ .
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~--~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRR--DMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHH--HHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhh--hhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999998643210 11121111000000 100112345689988873 233333 5
Q ss_pred HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhc
Q psy10117 72 AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQ 105 (135)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~ 105 (135)
.++..+.+.++|+|.++. +.+....|++.+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 566678899999999987 566677777766543
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.41 E-value=5.9e-07 Score=66.40 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=37.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCCCCc-----cCCcceeEEEEEeeeecCCceEEEEEEecCCCc
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTAEEY-----HPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~ 64 (135)
.+|+|+|.+++|||||+|+|++....-.+ ..|.|.-.+.. +. .......+.++||||-.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~--~~-~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCV--PH-PKKPGHILVLLDTEGLG 102 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEE--EC-SSSTTCEEEEEEECCBC
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeec--cc-ccCCCceEEEecCCCcC
Confidence 57899999999999999999987532111 22333321111 11 11234578999999954
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.29 E-value=3.8e-06 Score=62.46 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++|+|++|||||||++.+.+...+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4899999999999999999997543
No 224
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.14 E-value=1.3e-06 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~ 26 (135)
.+++++|++|+|||||++.+.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.11 E-value=7.9e-06 Score=58.42 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=38.1
Q ss_pred ceEEEEEEecCCCcccccch-H---Hh--hccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCc-e-EEEEEecCCC
Q psy10117 51 SKTEIELWDTSGDHKFESVW-P---AF--QRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNH-K-CLLIDNVKPG 122 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~~-~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-~ivv~nK~D~ 122 (135)
..+.+-|.||+|........ . .. ...++.+++|.|..... ........+. . .. | ..+|.||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~---~--~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK---E--AVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH---T--TSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh---h--cccCCeEEEEeCCCC
Confidence 34678999999965432111 1 11 12689999999986543 2222233332 1 24 4 8899999995
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.11 E-value=1.2e-05 Score=57.50 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=60.1
Q ss_pred EEEEEECCCCCChHHHHHHHhcCCCC----------CCcc-----------CCcceeEEEEEeee-----------ecCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLTTA----------EEYH-----------PTQGVRIVECEHSY-----------ALDT 50 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~~~----------~~~~-----------~t~~~~~~~~~~~~-----------~~~~ 50 (135)
.-|+++|++||||||++..|...-.. +.+. ...+..++...... ....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~ 180 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999988731100 1111 11122221110000 0000
Q ss_pred ceEEEEEEecCCCcccccc----hHH--hhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 51 SKTEIELWDTSGDHKFESV----WPA--FQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
..+.+-|.||+|....... ... ....++.+++|.|...... .......+... -.+..+|.||.|.
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS----CTTEEEEEECCSS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh----CCCeEEEEECCCC
Confidence 2367889999995432211 111 1235789999999876433 22222333221 2355788999995
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.06 E-value=6.4e-06 Score=58.85 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=36.7
Q ss_pred eEEEEEEecCCCcc--ccc----chHHhh--ccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 52 KTEIELWDTSGDHK--FES----VWPAFQ--RDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 52 ~~~~~i~d~~g~~~--~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
...+-|.|++|... ... ...... ...+.+++|.|........ .....+... -.+..+|.||.|.
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~----~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA----SPIGSVIITKMDG 250 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH----CSSEEEEEECGGG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc----cCCcEEEEecccc
Confidence 45778999999543 111 111111 2468999999987654322 222333222 1356788999984
No 228
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.02 E-value=2.9e-06 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
-++++|++|||||||++.+.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998753
No 229
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.02 E-value=3e-06 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++|+||+|||||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 230
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.96 E-value=4.3e-06 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
++|+||+|||||||++.+.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998643
No 231
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.95 E-value=4.5e-06 Score=53.75 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
++++|++|||||||++.+.+..
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998754
No 232
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.95 E-value=4.7e-06 Score=53.25 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.95 E-value=6.5e-06 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
-++++|++|||||||++.+.+...+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3689999999999999999986553
No 234
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.94 E-value=5e-06 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
-++|+||+|||||||++.+.+...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 378999999999999999998654
No 235
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.92 E-value=6.1e-06 Score=51.64 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=16.7
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy10117 5 ILILGPIMAGKTVLANALC 23 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~ 23 (135)
++++|++|||||||++.+.
T Consensus 12 ~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEECCTTSCHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999543
No 236
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.90 E-value=6.1e-06 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++++|++||||||+++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999999875
No 237
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.90 E-value=6.1e-06 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.++|+|++|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999998854
No 238
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.90 E-value=9.8e-06 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.8
Q ss_pred CeEEEEEECCCCCChHHHHHHHhc
Q psy10117 1 MKIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~ 24 (135)
|+..|++.|++||||||+.+.+..
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 566799999999999999999987
No 239
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.89 E-value=8.3e-06 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
-++++|++|||||||++.+.+...
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 367999999999999999998654
No 240
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.88 E-value=1e-05 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++++|++|||||||++.+.+...
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999998654
No 241
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.87 E-value=4.7e-06 Score=58.42 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=43.4
Q ss_pred CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.++.|+..+..+++.++++++|+|++++. ..|...+.+... +.|+++|+||+|.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~--~~p~ilV~NK~DL 108 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG--NNKVLLVGNKADL 108 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS--SSCEEEEEECGGG
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC--CCcEEEEEEChhc
Confidence 46789999999999999999999998743 456666655433 7899999999995
No 242
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.87 E-value=6.9e-06 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|+++|++||||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 243
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.87 E-value=1.1e-05 Score=54.01 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
-++++|++|||||||++.+.+...
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 368999999999999999998654
No 244
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.86 E-value=1.1e-05 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++++|++|+|||||++.+.+...
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 67999999999999999998654
No 245
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.86 E-value=1.2e-05 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.+.++|++|||||||++.+.+...+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3689999999999999999986543
No 246
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.86 E-value=8.4e-06 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
-++++|++|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999865
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.86 E-value=8.5e-06 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
-|+|+||+|||||||++.|....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999998643
No 248
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.86 E-value=1.1e-05 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
-++++|++|||||||++.+.+...+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3689999999999999999986543
No 249
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.85 E-value=1.2e-05 Score=53.65 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
-++++|++|||||||++.+.+...+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3689999999999999999986543
No 250
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.85 E-value=1e-05 Score=51.49 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.3
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.84 E-value=9.5e-06 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|.|+|++|||||||++.+.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988764
No 252
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.84 E-value=1.6e-05 Score=52.64 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++|++|+|||||++.+.+...+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999986543
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.84 E-value=9.5e-06 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
|+++||+||||||+++.|....
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHST
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 7899999999999999998764
No 254
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.83 E-value=1.3e-05 Score=53.66 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|||||||++.+.+...
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 368999999999999999998654
No 255
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.83 E-value=1.3e-05 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
-++++|++|+|||||++.+.+...
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 368999999999999999998654
No 256
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.83 E-value=1.4e-05 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999998654
No 257
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.83 E-value=1.4e-05 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
-++++|++|+|||||++.+.+...
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 368999999999999999998754
No 258
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.82 E-value=1.6e-05 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++|++|||||||++.+.+...+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999987543
No 259
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.81 E-value=1.5e-05 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 368999999999999999998654
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.81 E-value=1.2e-05 Score=53.04 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|||||||++.+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998643
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.80 E-value=1.7e-05 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCChHHHHHHHhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~ 24 (135)
.--++++|++||||||+++.+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 34578999999999999999986
No 262
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.80 E-value=4.8e-05 Score=54.58 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.2
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
|.|+|++++|||+|+|+|++.
T Consensus 70 VsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 70 VSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhhh
Confidence 679999999999999999863
No 263
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.80 E-value=1.8e-05 Score=53.38 Aligned_cols=25 Identities=40% Similarity=0.399 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++|++|+|||||++.+.+...+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4789999999999999999986543
No 264
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.79 E-value=1.7e-05 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++|+|++|+|||||++.+.+...+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999987543
No 265
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.78 E-value=1.9e-05 Score=50.58 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.4
Q ss_pred CeEEEEEECCCCCChHHHHHHHhc
Q psy10117 1 MKIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~ 24 (135)
|.+.|.++|++||||||+.+.|.+
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999987
No 266
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.78 E-value=0.00012 Score=49.77 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=38.5
Q ss_pred ceEEEEEEecCCCcc--ccc-chH-----HhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCce-EEEEEecCC
Q psy10117 51 SKTEIELWDTSGDHK--FES-VWP-----AFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK-CLLIDNVKP 121 (135)
Q Consensus 51 ~~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D 121 (135)
..+.+-|.||||... ... ... .....++.+++|.|.... .+....+..+.. ..| ..+|.||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 345789999999765 211 111 124478999999998643 222223333322 244 678889998
Q ss_pred C
Q psy10117 122 G 122 (135)
Q Consensus 122 ~ 122 (135)
.
T Consensus 251 ~ 251 (297)
T 1j8m_F 251 G 251 (297)
T ss_dssp G
T ss_pred C
Confidence 4
No 267
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.78 E-value=1.8e-05 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 368999999999999999998654
No 268
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.77 E-value=1.9e-05 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 367999999999999999998654
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.77 E-value=1.5e-05 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++++|++|+|||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999985
No 270
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.76 E-value=1.2e-05 Score=52.05 Aligned_cols=22 Identities=41% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++++|++|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999986
No 271
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.76 E-value=1.6e-05 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++++|++|+|||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 272
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.76 E-value=7.5e-06 Score=57.38 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=41.8
Q ss_pred CCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
.++.|+..+..+++.++++++|+|++++.+ .|..++.+.. .+.|+++|+||+|.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DL 110 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADL 110 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGG
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhc
Confidence 478899999999999999999999998764 3444443332 37899999999994
No 273
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.75 E-value=1.6e-05 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 478999999999999999998643
No 274
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.74 E-value=1.6e-05 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.|+++|++||||||+++.+.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999998754
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.74 E-value=2e-05 Score=51.97 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHh
Q psy10117 4 KILILGPIMAGKTVLANALC 23 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~ 23 (135)
.|+|+|++||||||+++.+.
T Consensus 29 ~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999999
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.73 E-value=2.6e-05 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|||||||++.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 478999999999999999998654
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=1.5e-05 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998874
No 278
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.73 E-value=1.9e-05 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
-|+++|++||||||+++.|....
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998643
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.73 E-value=1.8e-05 Score=50.59 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|+++|++||||||+++.+.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 280
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.73 E-value=1.7e-05 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.++++|++||||||+++.+.+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 47899999999999999998753
No 281
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.72 E-value=2.2e-05 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.4
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++||+|||||||++.+.+...+
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCchHHHHHHHHhcCCCC
Confidence 679999999999999999997653
No 282
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.72 E-value=2.4e-05 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
-++++|++|||||||++.+.+...+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 4689999999999999999986553
No 283
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.72 E-value=2.9e-05 Score=52.02 Aligned_cols=23 Identities=48% Similarity=0.719 Sum_probs=21.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.++++|++|+|||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999876
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.71 E-value=2.2e-05 Score=48.55 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=18.6
Q ss_pred EEEEEECCCCCChHHHHHHH
Q psy10117 3 IKILILGPIMAGKTVLANAL 22 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l 22 (135)
+-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.71 E-value=1.7e-05 Score=50.96 Aligned_cols=22 Identities=45% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.|.|+|++|||||||++.+.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998874
No 286
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.70 E-value=2.9e-05 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++|++|||||||++.+.+...+
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 679999999999999999987553
No 287
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.69 E-value=2.5e-05 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 288
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.68 E-value=2.6e-05 Score=50.60 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|.++|++||||||+.+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988763
No 289
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.68 E-value=3.3e-05 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++||+|||||||++.+.+...+
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEcCCCchHHHHHHHHHcCCCC
Confidence 689999999999999999987653
No 290
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.68 E-value=3.3e-05 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++|++|||||||++.+.+...+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCchHHHHHHHHhcCCCC
Confidence 679999999999999999987553
No 291
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.68 E-value=3.3e-05 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++|++|||||||++.+.+-..+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEcCCCchHHHHHHHHHCCCCC
Confidence 679999999999999999987553
No 292
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.68 E-value=2.7e-05 Score=50.23 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.67 E-value=3e-05 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.67 E-value=2.6e-05 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++|+|++|+|||||++.|.+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5789999999999999999864
No 295
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.67 E-value=2.7e-05 Score=51.09 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=17.9
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy10117 5 ILILGPIMAGKTVLANALC 23 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~ 23 (135)
++++|++|+|||||++.++
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6899999999999999888
No 296
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.66 E-value=3e-05 Score=50.08 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
++|+++|+|||||+|...+|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988863
No 297
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.66 E-value=4.3e-05 Score=51.67 Aligned_cols=57 Identities=9% Similarity=-0.011 Sum_probs=39.9
Q ss_pred EEecCCCc-ccccchHHhhccCcEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCceEEEEEecCCC
Q psy10117 57 LWDTSGDH-KFESVWPAFQRDVHGIIFVFNSGVPGHIS--ELLLFYDYFVTQSDLNNHKCLLIDNVKPG 122 (135)
Q Consensus 57 i~d~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 122 (135)
|-..||+. .........+.++|+++.|+|+.++.+.. .+..|+ .+.|.++|.||+|.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL 62 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADK 62 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGG
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECccc
Confidence 45578875 45556677789999999999999988764 344443 36899999999994
No 298
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.65 E-value=3.8e-05 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++|++|||||||++.+.+...+
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCChHHHHHHHHHcCCCC
Confidence 679999999999999999987553
No 299
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.65 E-value=3.7e-05 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++++|++|||||||++.+.+...
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCcHHHHHHHHHHcCCC
Confidence 67999999999999999998755
No 300
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.65 E-value=3.7e-05 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.2
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
+.++|++|||||||++.+.+...+
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEcCCCchHHHHHHHHhcCCCC
Confidence 679999999999999999987553
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.65 E-value=1.6e-05 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=14.7
Q ss_pred EEEEECCCCCChHHHHHHHh-cC
Q psy10117 4 KILILGPIMAGKTVLANALC-DL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~-~~ 25 (135)
-++|+|++|||||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999 64
No 302
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.65 E-value=2.2e-05 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.+++.|++|+|||+|++.+.+..
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988753
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.64 E-value=2.9e-05 Score=49.63 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|+++|++||||||+.+.+.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988764
No 304
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.64 E-value=3.8e-05 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999874
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.64 E-value=3e-05 Score=48.36 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|+++|++||||||+++.+.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 306
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.63 E-value=4.4e-05 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
-++++|++|||||||++.+. ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 36899999999999999999 544
No 307
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=3.6e-05 Score=49.16 Aligned_cols=21 Identities=38% Similarity=0.592 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|+++|++||||||+.+.+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.63 E-value=2.7e-05 Score=50.48 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
++|+|++|+|||||++.+++.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 309
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.62 E-value=2.8e-05 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCchHHHHHHHHHcCCC
Confidence 578999999999999999998654
No 310
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.62 E-value=3.2e-05 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999998654
No 311
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.62 E-value=3.1e-05 Score=54.08 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=22.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhcCCC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.-+++|+|++|+|||||++.+.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987543
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.62 E-value=3.1e-05 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|.|+|++|||||||++.+.+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 5789999999999999988874
No 313
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.61 E-value=3.1e-05 Score=49.43 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999886
No 314
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.61 E-value=2.9e-05 Score=54.04 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
++++|++|||||||++.+.+...+
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEECCCCccHHHHHHHHHcCCCC
Confidence 689999999999999999987553
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.60 E-value=3.5e-05 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.|+|+|++||||||+.+.|...
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.58 E-value=4.2e-05 Score=48.64 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999886
No 317
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.57 E-value=0.00012 Score=46.79 Aligned_cols=21 Identities=43% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
+++.|++|+|||++++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 318
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.57 E-value=1.1e-05 Score=55.25 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=0.0
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy10117 5 ILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~ 24 (135)
++++|++|||||||+|.+.+
T Consensus 176 ~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHhcc
No 319
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.56 E-value=4.1e-05 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.++|+|++||||||+++.+++..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998743
No 320
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.55 E-value=4.7e-05 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++++|++|+|||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999874
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.55 E-value=3.6e-05 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.5
Q ss_pred CeEEEEEECCCCCChHHHHHHHhc
Q psy10117 1 MKIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~ 24 (135)
|...|++.|++||||||+.+.|..
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999998875
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.55 E-value=4.5e-05 Score=50.33 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
-|.|+|++|||||||++.+.+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.55 E-value=6.5e-05 Score=47.16 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.4
Q ss_pred eEEEEEECCCCCChHHHHHHHhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~ 24 (135)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 324
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.55 E-value=5.6e-05 Score=47.56 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 325
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.55 E-value=4.6e-05 Score=49.15 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=19.9
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 326
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.54 E-value=4.6e-05 Score=51.25 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
++++||+|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999874
No 327
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.54 E-value=3e-05 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++++|++|||||||++.+.+...
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 67999999999999999998755
No 328
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.53 E-value=6.2e-05 Score=51.97 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|||||||++.+.+...
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999998654
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.52 E-value=6.5e-05 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 330
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.52 E-value=5e-05 Score=51.90 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++++|++||||||+++.+.+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998853
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.52 E-value=6.3e-05 Score=47.32 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.8
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 332
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.50 E-value=5.5e-05 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++++|++||||||+++.+.+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 333
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.50 E-value=7e-05 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++|+|||||++.+.+...
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 578999999999999999998654
No 334
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.50 E-value=4.2e-05 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998854
No 335
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.50 E-value=5.2e-05 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.+.++|++|||||||++.+.+..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 37899999999999999999753
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.50 E-value=7.6e-05 Score=47.06 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|++.|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999875
No 337
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.50 E-value=5.9e-05 Score=49.84 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999999874
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.47 E-value=8.9e-05 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=20.3
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
++|++.|++||||||+.+.|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999975
No 339
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.47 E-value=8.4e-05 Score=47.39 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~ 24 (135)
.+.|++.|++||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.46 E-value=8.6e-05 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999876
No 341
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.46 E-value=6.8e-05 Score=46.77 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
+|+++|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 342
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.46 E-value=2.8e-05 Score=48.79 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.+.|+|++|||||||++.+.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998753
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.46 E-value=9.1e-05 Score=46.57 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCChHHHHHHHhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~ 24 (135)
...|++.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998875
No 344
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.46 E-value=7.1e-05 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++|+|++||||||+++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 345
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.0011 Score=45.64 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998873
No 346
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.45 E-value=7e-05 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++++|++||||||+++.+.+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.45 E-value=8.5e-05 Score=48.06 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
+.|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 348
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.45 E-value=8.6e-05 Score=48.29 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
+.|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 349
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.44 E-value=0.00011 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|++.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999863
No 350
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.44 E-value=0.00092 Score=40.40 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.|++.|++|+|||++.+.+....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998753
No 351
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.44 E-value=7e-05 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
-++|+|++||||||+++.+++...
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 378999999999999999988543
No 352
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.43 E-value=0.00011 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.6
Q ss_pred CeEEEEEECCCCCChHHHHHHHhc
Q psy10117 1 MKIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~ 24 (135)
|+..|++.|++||||||+.+.|..
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 566799999999999999999886
No 353
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.43 E-value=8.2e-05 Score=46.11 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 354
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.42 E-value=8e-05 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.-|++.|++||||||+.+.+...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 355
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.42 E-value=8.3e-05 Score=46.59 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=18.5
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
.+|+|++|+|||||+..+...
T Consensus 29 ~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998753
No 356
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.42 E-value=0.00012 Score=46.12 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998865
No 357
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.42 E-value=0.00011 Score=46.36 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.+|+++|++||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998764
No 358
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.41 E-value=8.2e-05 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.||+|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999875
No 359
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.41 E-value=7.4e-05 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.-|.|+|++|||||||++.+.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999988874
No 360
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.41 E-value=0.00011 Score=48.79 Aligned_cols=21 Identities=43% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEECCCCCChHHHHHHHh
Q psy10117 3 IKILILGPIMAGKTVLANALC 23 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~ 23 (135)
..|.|+|++||||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 361
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.41 E-value=0.00014 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++|++|+|||||++.+.+...+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999986543
No 362
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.41 E-value=8.8e-05 Score=49.26 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
No 363
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.41 E-value=0.0001 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 364
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.41 E-value=0.00011 Score=47.06 Aligned_cols=23 Identities=39% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|+++|++||||||+.+.|...
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999875
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.41 E-value=9.1e-05 Score=48.19 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|+|.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 366
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.41 E-value=7.1e-05 Score=48.91 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|+|.|++||||||+++.+.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999998875
No 367
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.40 E-value=9e-05 Score=49.70 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
-++++|++|+|||+|++.+.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 38999999999999999998753
No 368
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.39 E-value=0.00011 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++|+|++||||||+++.+++...
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999998654
No 369
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.38 E-value=0.00014 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.1
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
+.++|++|+|||||++.+.+...+
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 679999999999999999986543
No 370
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.38 E-value=0.00012 Score=45.87 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|++.|++||||||+.+.+..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 371
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.37 E-value=0.0001 Score=47.67 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.8
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
++++|++|+|||||+..+...
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999998853
No 372
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.37 E-value=9.7e-05 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++++|++||||||+++.+.+.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 4789999999999999988864
No 373
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.37 E-value=0.0001 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
+=|.|+|++|||||||++.+.+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999988653
No 374
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.36 E-value=0.00013 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|++.|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 375
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.36 E-value=9.9e-05 Score=47.21 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
.-|.++|++||||||+++.+.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
No 376
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.36 E-value=8.9e-05 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.726 Sum_probs=20.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.++|+|++|||||||++.+++..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57899999999999999998753
No 377
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.35 E-value=0.00012 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
++.++|++|+|||||++.+.+...
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999999754
No 378
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00017 Score=53.76 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
-+.++|++|+|||||++.+.+...+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 3689999999999999999986544
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.34 E-value=0.00012 Score=47.26 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
++|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 380
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.33 E-value=0.00015 Score=45.86 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|++.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998864
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.33 E-value=0.00012 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.33 E-value=0.00015 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.262 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 383
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.33 E-value=9.7e-05 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|++.|++||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 384
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.32 E-value=0.00012 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++|+|++|||||||++.|.+.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHH
Confidence 4789999999999999998853
No 385
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.32 E-value=0.00015 Score=45.83 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.7
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|++.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.31 E-value=0.00015 Score=47.21 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.8
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
|+++|+|||||+|...+|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988753
No 387
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.31 E-value=0.00019 Score=45.75 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|+|.|++||||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 388
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.31 E-value=0.00016 Score=45.21 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-+.++|++|||||||+.++...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998863
No 389
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.31 E-value=0.00017 Score=44.14 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=17.1
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy10117 5 ILILGPIMAGKTVLANALC 23 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~ 23 (135)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999876
No 390
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.30 E-value=0.00019 Score=45.16 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|++.|.+||||||+.+.+...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 391
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=0.00014 Score=48.08 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 392
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.29 E-value=0.00082 Score=40.56 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.|++.|++|+|||++.+.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999988764
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.29 E-value=5e-05 Score=48.74 Aligned_cols=22 Identities=36% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|+|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999998753
No 394
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.29 E-value=0.0002 Score=53.01 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++|++|+|||||++.+.+...+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999986543
No 395
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.29 E-value=0.00023 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.+.++|++|+|||||++.+.+...+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhCCCCC
Confidence 4789999999999999999986543
No 396
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.28 E-value=0.0001 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.7
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
++|+|+.|||||||++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 5789999999999999999754
No 397
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.28 E-value=0.00016 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|++.|++||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998773
No 398
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.28 E-value=0.00018 Score=47.01 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.+|+++|++||||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 399
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.28 E-value=0.00012 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988764
No 400
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.27 E-value=0.00019 Score=53.09 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 578999999999999999998654
No 401
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.27 E-value=0.00013 Score=49.26 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=19.4
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
++|+|++|+|||||+..+.+..
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999888643
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.26 E-value=0.00018 Score=46.63 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988864
No 403
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.26 E-value=0.00014 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.0
Q ss_pred EEEECCCCCChHHHHHHHhcCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~ 27 (135)
++|+|++|+|||||++.+.+...
T Consensus 32 ~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 32 TTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999986543
No 404
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.26 E-value=0.00017 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|++.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 405
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.25 E-value=0.00021 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.1
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
.-|.|.|++|||||||++.+..
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987764
No 406
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.25 E-value=0.00017 Score=51.66 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
++.++|++|+|||||++.+.+...
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 578999999999999999998754
No 407
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.25 E-value=0.00014 Score=48.28 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|+++|++||||||+.+.+...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999998763
No 408
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.24 E-value=0.00025 Score=45.77 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.5
Q ss_pred eEEEEEECCCCCChHHHHHHHhc
Q psy10117 2 KIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~ 24 (135)
.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 409
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.00024 Score=52.21 Aligned_cols=25 Identities=48% Similarity=0.460 Sum_probs=21.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.+.++|++|+|||||++.+.+...+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3689999999999999999986553
No 410
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.24 E-value=0.00024 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 411
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.24 E-value=0.00024 Score=52.87 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.+.++|++|+|||||++.+.+...+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999986543
No 412
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.23 E-value=0.0002 Score=45.63 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.9
Q ss_pred CeEEEEEECCCCCChHHHHHHHhc
Q psy10117 1 MKIKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~ 24 (135)
|+..|.|.|++||||||+.+.|..
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 444789999999999999998876
No 413
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.23 E-value=0.00019 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|++.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.23 E-value=0.00019 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
++++|++|+|||||+..++..
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999999874
No 415
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.23 E-value=0.00028 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.+.|+|++|+|||||++.+.+...+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999986543
No 416
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.23 E-value=0.00023 Score=45.15 Aligned_cols=23 Identities=39% Similarity=0.394 Sum_probs=20.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
..|+|.|++||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 56899999999999999999874
No 417
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.22 E-value=0.00021 Score=53.08 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.++++|++|+|||||++.+.+...
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 578999999999999999998654
No 418
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.21 E-value=0.0002 Score=45.98 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=18.8
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy10117 5 ILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~ 24 (135)
++++|++|+|||||+..+..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.21 E-value=0.00029 Score=48.52 Aligned_cols=25 Identities=48% Similarity=0.668 Sum_probs=21.3
Q ss_pred CeEEEEEECCCCCChHHHHHHHhcC
Q psy10117 1 MKIKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 1 ~~~ki~viG~~~~GKssli~~l~~~ 25 (135)
|...|+|+|++|||||||...|...
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988863
No 420
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.20 E-value=0.00024 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
+.|++.|++||||||+.+.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.20 E-value=0.00028 Score=43.60 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 422
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.20 E-value=0.00024 Score=45.16 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~ 26 (135)
-.+++.|++|+|||+|+..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999888643
No 423
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.19 E-value=0.00015 Score=45.32 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=15.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|++.|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEEECCC----CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 424
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.19 E-value=0.00025 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++|++|+|||||++.+.+...+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCC
Confidence 5789999999999999999986543
No 425
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.19 E-value=0.00018 Score=47.75 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.|+++|++||||||+.+.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.18 E-value=0.00023 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.-|++.|++||||||+++.+...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998874
No 427
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.17 E-value=0.00024 Score=49.69 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=17.4
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy10117 5 ILILGPIMAGKTVLANALC 23 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~ 23 (135)
.+|+|++|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999887
No 428
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.16 E-value=0.00025 Score=45.61 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
.-|++.|++||||||+.+.+...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999988763
No 429
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00034 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~~~ 28 (135)
+.++|++|+|||||++.+.+...+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 689999999999999999987654
No 430
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.15 E-value=0.0003 Score=49.19 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.5
Q ss_pred eEEEEEECCCCCChHHHHHHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALC 23 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~ 23 (135)
..||+++|.+||||||+++.+.
T Consensus 33 ~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHH
Confidence 3699999999999999998764
No 431
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.15 E-value=0.0002 Score=52.93 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++|++|+|||||++.+.+...+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 5789999999999999998886543
No 432
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.13 E-value=0.00025 Score=49.85 Aligned_cols=21 Identities=52% Similarity=0.656 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
-++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999986
No 433
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.13 E-value=0.00037 Score=48.28 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.7
Q ss_pred eEEEEEECCCCCChHHHHHHHhcC
Q psy10117 2 KIKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~~~ 25 (135)
+.-|+|+|++|||||||...|...
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHH
Confidence 346899999999999999988864
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.13 E-value=0.00026 Score=47.77 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.13 E-value=0.00027 Score=45.57 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++|.|++|+|||++++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 436
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.11 E-value=0.00028 Score=47.27 Aligned_cols=22 Identities=45% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999874
No 437
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.09 E-value=0.00031 Score=46.32 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999874
No 438
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.09 E-value=0.0003 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTTA 28 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~~ 28 (135)
.++++|++|+|||||++.+.+...+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCccC
Confidence 5789999999999999999886543
No 439
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.07 E-value=0.00031 Score=47.72 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999999874
No 440
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.05 E-value=0.0003 Score=47.16 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=18.4
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy10117 5 ILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~ 24 (135)
++|+|++|+|||||+..++.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999998885
No 441
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.05 E-value=0.00031 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-+++.||+|+|||+|++.+...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999999999874
No 442
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.04 E-value=0.00049 Score=45.49 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
+.|.|.|++||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 443
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.03 E-value=0.00035 Score=47.76 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||+|++.+...
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999998874
No 444
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.00 E-value=0.0006 Score=43.45 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.6
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
+.|.+.|.+||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999988764
No 445
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.99 E-value=0.0005 Score=46.31 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.8
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
+.|+|.|++||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998873
No 446
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.99 E-value=0.0068 Score=38.31 Aligned_cols=67 Identities=7% Similarity=-0.079 Sum_probs=47.2
Q ss_pred eEEEEEEecCCCcccccchHHhhccCcEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCceEEEEEecCCC
Q psy10117 52 KTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSD-LNNHKCLLIDNVKPG 122 (135)
Q Consensus 52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 122 (135)
.+.+-|.|+|+.. .......+..+|.++++...+..+ ..+...++.+..... .++.++.+|.|+.+.
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 4678899999865 234456677899999999876544 666666666654321 235678999999984
No 447
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.98 E-value=0.00052 Score=44.08 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.8
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~ 26 (135)
..|+|+|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998753
No 448
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.98 E-value=0.00044 Score=46.81 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999876653
No 449
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.98 E-value=0.00052 Score=44.03 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.9
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy10117 5 ILILGPIMAGKTVLANALC 23 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~ 23 (135)
.+|+|++|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999775
No 450
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.97 E-value=0.00039 Score=47.28 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy10117 4 KILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~ 24 (135)
.++++|++|+||||++..+..
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 451
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.96 E-value=0.00049 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.+.++|++|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999997543
No 452
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.96 E-value=0.00034 Score=45.16 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.||+|+|||+++..++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998888763
No 453
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.96 E-value=0.0004 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.++|.|++|+|||+|++.+...
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 454
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.95 E-value=0.00036 Score=54.49 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~~ 27 (135)
.+.|+|++|+|||||++.+.+...
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998654
No 455
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.95 E-value=0.00049 Score=46.42 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 52 ~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998864
No 456
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.00046 Score=47.54 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
+++.||+|+||||+++.+.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998753
No 457
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.95 E-value=0.0005 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|+++|++|+||||++..+...
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHH
Confidence 4789999999999999988753
No 458
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.94 E-value=0.00049 Score=46.54 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.+++.|++|+|||++++.+....
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 58999999999999999988753
No 459
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.94 E-value=0.00049 Score=47.86 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.++|.|++|+|||++++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 460
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.94 E-value=0.00056 Score=45.59 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.5
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
-.+++.|++|+|||++++.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999874
No 461
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.93 E-value=0.00069 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEEEECCCCCChHHHHHHHh
Q psy10117 2 KIKILILGPIMAGKTVLANALC 23 (135)
Q Consensus 2 ~~ki~viG~~~~GKssli~~l~ 23 (135)
.+||+++|..+|||||+++.+.
T Consensus 9 ~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 9 IRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEECCCCCcHHHHHHHHH
Confidence 4799999999999999998665
No 462
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0005 Score=49.09 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=19.6
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
|++.||||+|||+|++.+.+.
T Consensus 209 iLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999874
No 463
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.00053 Score=44.73 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.3
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy10117 5 ILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~ 24 (135)
++++|++|+|||+|+..++.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999877654
No 464
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.91 E-value=0.0022 Score=46.08 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=35.9
Q ss_pred EEEECCCCCChHHHHHHHhc------------------CCCC---CCccCCcceeEEEEEeee-ecCCceEEEEEEecCC
Q psy10117 5 ILILGPIMAGKTVLANALCD------------------LTTA---EEYHPTQGVRIVECEHSY-ALDTSKTEIELWDTSG 62 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~------------------~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~d~~g 62 (135)
|.|+|+.++|||+|+|.++. ..+. .....|.|+-+....+.. ..++..+.+-+.||.|
T Consensus 70 vsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG 149 (457)
T 4ido_A 70 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQG 149 (457)
T ss_dssp EEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECC
T ss_pred EEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccC
Confidence 55999999999999995541 1111 112345554322111111 2245678899999999
Q ss_pred Cc
Q psy10117 63 DH 64 (135)
Q Consensus 63 ~~ 64 (135)
..
T Consensus 150 ~~ 151 (457)
T 4ido_A 150 TF 151 (457)
T ss_dssp BT
T ss_pred CC
Confidence 54
No 465
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.90 E-value=0.00059 Score=48.50 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|+++|++||||||+.+.+...
T Consensus 260 lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998764
No 466
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.00056 Score=48.93 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|++.||||+|||+|++.+.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 467
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.89 E-value=0.00055 Score=46.98 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.||+|+|||+|++.+...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 4899999999999999999874
No 468
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.89 E-value=0.00063 Score=44.48 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
..|.|+|++||||||+.+.+..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998885
No 469
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.87 E-value=0.0007 Score=46.85 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|+|+||+|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.87 E-value=0.00068 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|+|+||+|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4678999999999999999864
No 471
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00062 Score=48.76 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.2
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|++.||||+|||+|++.+.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999874
No 472
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.85 E-value=0.00064 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
+++++|++|+|||++++.+...
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 473
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.85 E-value=0.00056 Score=47.56 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.8
Q ss_pred EEEECCCCCChHHHHHHHhcCC
Q psy10117 5 ILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~~ 26 (135)
+.|+|++|+|||||+..++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998754
No 474
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.83 E-value=0.001 Score=45.59 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|+|+||+|||||+|...+...
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 4789999999999999999864
No 475
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.00067 Score=46.63 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=19.3
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998864
No 476
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.82 E-value=0.00064 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
-++++||+|+|||+|++.+.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999988753
No 477
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.82 E-value=0.00076 Score=46.20 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 53 ~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999874
No 478
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.81 E-value=0.00078 Score=46.55 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.8
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy10117 5 ILILGPIMAGKTVLANALC 23 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~ 23 (135)
.+|+|++|+||||++..+.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3699999999999999874
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.81 E-value=0.0009 Score=43.88 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
+++.++|++||||||+...|..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 6889999999999999998875
No 480
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.00073 Score=47.86 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-|++.||||+|||.|++.+.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 4899999999999999999874
No 481
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.80 E-value=0.00095 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=19.4
Q ss_pred EEEEEECCCCCChHHHHHHHhc
Q psy10117 3 IKILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~ 24 (135)
.+|+++|++|+||||+.+.+..
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999987764
No 482
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.78 E-value=0.00063 Score=47.19 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 483
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.78 E-value=0.0003 Score=46.68 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=19.1
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
+++.|++|+|||++++.+...
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999864
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.77 E-value=0.00069 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.||+|+|||++++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 485
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.77 E-value=0.00018 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=18.9
Q ss_pred EEECCCCCChHHHHHHHhcCCC
Q psy10117 6 LILGPIMAGKTVLANALCDLTT 27 (135)
Q Consensus 6 ~viG~~~~GKssli~~l~~~~~ 27 (135)
+|+||+|+|||||++.+.+...
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcccc
Confidence 4789999999999999987544
No 486
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.77 E-value=0.00066 Score=46.56 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.1
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy10117 5 ILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~ 24 (135)
.+|+|++|+|||+|+..+..
T Consensus 27 ~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 27 TAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEECCTTTCSTHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57999999999999999873
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.76 E-value=0.00073 Score=49.42 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=0.0
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy10117 5 ILILGPIMAGKTVLANALC 23 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~ 23 (135)
++|+|++|+|||||++.++
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.76 E-value=0.00093 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.2
Q ss_pred EEEEEECCCCCChHHHHHHHhcC
Q psy10117 3 IKILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~ 25 (135)
-.+++.|++|+|||+|+..+...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988763
No 489
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.76 E-value=0.00083 Score=46.08 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 490
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.75 E-value=0.00079 Score=49.03 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 491
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.74 E-value=0.00089 Score=45.77 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 492
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.74 E-value=0.0011 Score=41.93 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy10117 5 ILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~~ 25 (135)
++|+|+++||||++...+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 493
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.74 E-value=0.00097 Score=46.59 Aligned_cols=20 Identities=40% Similarity=0.197 Sum_probs=18.1
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy10117 5 ILILGPIMAGKTVLANALCD 24 (135)
Q Consensus 5 i~viG~~~~GKssli~~l~~ 24 (135)
.+++|++|+||||++..+..
T Consensus 29 ~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 29 TGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHH
Confidence 57999999999999998874
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.73 E-value=0.00051 Score=50.61 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.9
Q ss_pred EEEEEECCCCCChHHHHHHHhcCC
Q psy10117 3 IKILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 3 ~ki~viG~~~~GKssli~~l~~~~ 26 (135)
..++++|++|||||||++.|.+..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhh
Confidence 358899999999999999998753
No 495
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.73 E-value=0.00085 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||+|++.+.+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 496
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.72 E-value=0.00093 Score=46.45 Aligned_cols=22 Identities=50% Similarity=0.845 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.||+|+|||++.+.+...
T Consensus 53 ~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 497
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.72 E-value=0.00091 Score=46.52 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.|++.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999874
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.70 E-value=0.0011 Score=46.38 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
.+++.|++|+|||++++.+...
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 499
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.70 E-value=0.0011 Score=43.94 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy10117 4 KILILGPIMAGKTVLANALCDLT 26 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~~ 26 (135)
.+++.|++|+|||++++.+....
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTS
T ss_pred CEEEECCCCCcHHHHHHHHHHhc
Confidence 58999999999999999998753
No 500
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.70 E-value=0.00096 Score=48.30 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy10117 4 KILILGPIMAGKTVLANALCDL 25 (135)
Q Consensus 4 ki~viG~~~~GKssli~~l~~~ 25 (135)
-+++.||+|+|||+|++.+.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
Done!