RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10117
(135 letters)
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 58.2 bits (141), Expect = 1e-11
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 1 MKIKILILGPIMAGKTVLANALCD----------LTTAEEYHPTQGVRIVECEHSYALDT 50
+ KI+ GP ++GKT + ++ A E T + + +
Sbjct: 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG-EVKG 71
Query: 51 SKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
KT L+ G + + R V GI+FV +S
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADS 107
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 52.7 bits (126), Expect = 3e-09
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRI----VECEHSYALDTSKTEIEL 57
+IK+ ++G MAGKT L L T + T G+ + D E
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100
Query: 58 --WDTSGDHKFESVWPAFQRDVHGIIFVFN 85
WD G + F + + +
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLD 130
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 49.3 bits (118), Expect = 2e-08
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWD 59
+K KI+++G GKT L + E Y PT + E S+ +DT + E+ LWD
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT----VFENYTASFEIDTQRIELSLWD 61
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
TSG +++V P D ++ F
Sbjct: 62 TSGSPYYDNVRPLSYPDSDAVLICF 86
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 48.5 bits (116), Expect = 4e-08
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 2 KIKILILGPIMAGKTVLANALCDLT--TAEEYHPTQGVRIVECEHSYALDTSKTEI---E 56
++K++I+G +GKT L L T G+ + + + +
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDV--KDWPIQIRDKRKRDLVLN 59
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFN 85
+WD +G +F S P F + V++
Sbjct: 60 VWDFAGREEFYSTHPHFMTQRALYLAVYD 88
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 48.5 bits (115), Expect = 9e-08
Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 13/124 (10%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYH---PTQGVRIVECEHSYALDTSKTEIEL 57
+ K+L++G +GK+ + + + +A + T V + L
Sbjct: 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL-----GNMTLNL 56
Query: 58 WDTSGDHKFESVWPAFQRD-----VHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHK 112
WD G F + Q+D V +I VF+ + ++ +F +
Sbjct: 57 WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA 116
Query: 113 CLLI 116
+ +
Sbjct: 117 KIFV 120
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 47.1 bits (112), Expect = 2e-07
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
K KI+++G GKT L + E Y PT + E S+ +DT + E+ LWDT
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT----VFENYTASFEIDTQRIELSLWDT 83
Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
SG +++V P D ++ F
Sbjct: 84 SGSPYYDNVRPLSYPDSDAVLICF 107
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 46.1 bits (109), Expect = 4e-07
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEE---YHPTQGVRIVECEHSYALDTSKTEIELW 58
K +IL++G +GK+ + + + E T + + +S S ++W
Sbjct: 20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNS-----SFVNFQIW 74
Query: 59 DTSGDHKFESVWPAFQ---RDVHGIIFVFNS 86
D G F ++ R +I+V ++
Sbjct: 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDA 105
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 45.3 bits (108), Expect = 6e-07
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTE-IEL 57
+K++ILG GKT L + + +++Y T G + V +D K +++
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVT------VDGDKVATMQV 62
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
WDT+G +F+S+ AF R + V+
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVY 89
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 45.3 bits (108), Expect = 6e-07
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L L +EY PT I E SY +D +++ D
Sbjct: 23 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPT----I---EDSYRKQVVIDGETCLLDILD 75
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ ++ + R G + VF
Sbjct: 76 TAGQEEYSAMRDQYMRTGEGFLCVF 100
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 45.3 bits (108), Expect = 6e-07
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K+L++G GK+ L D T E Y T GV R +E LD ++++W
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIW 87
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ ++ R HGII V+
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVY 113
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 45.2 bits (108), Expect = 7e-07
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K+LI+G GK+ L D T + Y T GV R VE ++ K ++++W
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE------INGEKVKLQIW 63
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ + R HG+I V+
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVY 89
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 44.8 bits (107), Expect = 9e-07
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
++ + G GK+ L T E Y PT + E +Y + D S +++ D
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPT----V---EDTYRQVISCDKSICTLQITD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G H+F ++ H I V+
Sbjct: 58 TTGSHQFPAMQRLSISKGHAFILVY 82
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 45.3 bits (107), Expect = 9e-07
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
+ K++++G + GKT + L E Y PT + E + + E+ LWDT
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPT----VFENYTACLETEEQRVELSLWDT 82
Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
SG +++V P D ++ F
Sbjct: 83 SGSPYYDNVRPLCYSDSDAVLLCF 106
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 44.9 bits (107), Expect = 1e-06
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
++++ G GK+ L T + Y PT I E +Y + D S +++ D
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPT----I---EDTYRQVISCDKSVCTLQITD 62
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G H+F ++ H I VF
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFILVF 87
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 45.0 bits (107), Expect = 1e-06
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIE 56
K K++ LG GKT L + Y T G+ + + L+ ++
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY------LEDRTVRLQ 68
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVF 84
LWDT+G +F S+ P++ RD + V+
Sbjct: 69 LWDTAGLERFRSLIPSYIRDSTVAVVVY 96
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 44.5 bits (106), Expect = 1e-06
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L L +EY PT I E SY +D +++ D
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPT----I---EDSYRKQVVIDGETCLLDILD 58
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ ++ + R G + VF
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVF 83
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 45.0 bits (107), Expect = 1e-06
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K+L++G GK+ L D T +Y T GV + VE LD ++++W
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE------LDGKTVKLQIW 62
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ ++ R HGII V+
Sbjct: 63 DTAGQERFRTITSSYYRGSHGIIIVY 88
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 44.7 bits (106), Expect = 1e-06
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA-LDTSKTEIELWD 59
++ K++I+G GKT L E Y PT + E + +D + E+ LWD
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT----VFENYIADIEVDGKQVELALWD 79
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ + P D I+ F
Sbjct: 80 TAGQEDYDRLRPLSYPDTDVILMCF 104
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 44.5 bits (106), Expect = 1e-06
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K+L++G GK+ L D T E Y T GV R +E LD ++++W
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE------LDGKTIKLQIW 70
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ ++ R HGII V+
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVY 96
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 44.4 bits (106), Expect = 1e-06
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIEL 57
KI ILG GK+ L + + Y PT I E+++ ++ + ++L
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPT----I---ENTFTKLITVNGQEYHLQL 58
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G ++ + D++G I V+
Sbjct: 59 VDTAGQDEYSIFPQTYSIDINGYILVY 85
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 44.6 bits (106), Expect = 1e-06
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K++++G GK+ L + E T GV R ++ +D + ++WD
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ------VDGKTIKAQIWD 60
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ + A+ R G + V+
Sbjct: 61 TAGQERYRRITSAYYRGAVGALLVY 85
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 44.3 bits (105), Expect = 1e-06
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
+ +L +G +GKT+L L T + + + + + L
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDT----QTSITDSSAIYKVN---NNRGNSLTLI 59
Query: 59 DTSGDHKF-ESVWPAFQRDVHGIIFVFNS 86
D G + F+ ++FV +S
Sbjct: 60 DLPGHESLRFQLLDRFKSSARAVVFVVDS 88
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 44.4 bits (105), Expect = 2e-06
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
+K++++G GKT L D E Y PT + E + + + +WDT
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT----VFERYMVNLQVKGKPVHLHIWDT 89
Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
+G ++ + P F D ++ F
Sbjct: 90 AGQDDYDRLRPLFYPDASVLLLCF 113
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 44.0 bits (105), Expect = 2e-06
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L L +E PT I E SY +D +++ D
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPT----I---EDSYRKQVVIDGETCLLDILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ ++ + R G + VF
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVF 82
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 44.2 bits (105), Expect = 2e-06
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
KI++ G GK+ LC E T GV + + +D +T ++LW
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLI------VDGERTVLQLW 82
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F S+ ++ R G++ ++
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLY 108
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 44.1 bits (105), Expect = 2e-06
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K++++G GKT L + + + T GV R V L T+ + ++W
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVM------LGTAAVKAQIW 79
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G ++ ++ A+ R G + VF
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVF 105
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 44.2 bits (105), Expect = 2e-06
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTE---- 54
IK+L LG GKT D ++ T G+ + V +S
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVF 84
++LWDT+G +F S+ AF RD G + +F
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMF 115
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 44.2 bits (105), Expect = 2e-06
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K+LI+G GKT D T + T G+ + V + ++++W
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVY------RHEKRVKLQIW 77
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G ++ ++ A+ R G I ++
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMY 103
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 44.2 bits (105), Expect = 2e-06
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
+KIL++G GK+ L + + T G+ + V+ ++ K +++LW
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD------INGKKVKLQLW 74
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ A+ R GII V+
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVY 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 44.1 bits (105), Expect = 2e-06
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K++++G GK+ L + E T GV R ++ +D + ++WD
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ------VDGKTIKAQIWD 84
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ ++ A+ R G + V+
Sbjct: 85 TAGLERYRAITSAYYRGAVGALLVY 109
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 44.1 bits (105), Expect = 2e-06
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
K K++ LG GKT L + Y T G+ + + L+ ++L
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY------LEDRTVRLQL 67
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
WDT+G +F S+ P++ RD + V+
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVY 94
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 43.7 bits (104), Expect = 2e-06
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
+KIL++G GK+ L + + T G+ + V+ ++ K ++++W
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD------INGKKVKLQIW 57
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ A+ R GII V+
Sbjct: 58 DTAGQERFRTITTAYYRGAMGIILVY 83
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 44.1 bits (105), Expect = 2e-06
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K +I+G GK+ L D + T GV R+V +D + ++++W
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN------IDGKQIKLQIW 75
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G F S+ ++ R G + V+
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVY 101
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 43.6 bits (104), Expect = 2e-06
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
IK++++G GK+ + C ++Y T GV R ++ ++ + LW
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQ------VNDEDVRLMLW 59
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F+++ A+ R + VF
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVF 85
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 43.7 bits (104), Expect = 2e-06
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDTSG 62
++++LG GKT LA+ + + + E + +D T + + DT
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQL----GEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 63 DHKFESVWPAFQ--RDVHGIIFVF 84
K + W + + V+
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVY 85
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 43.7 bits (104), Expect = 2e-06
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K+L++G GKT + + + T G+ R +E LD + ++++W
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIE------LDGKRIKLQIW 62
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ A+ R GI+ V+
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVY 88
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 43.9 bits (104), Expect = 2e-06
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
IK + +G GKT L + T +Y PT + + + ++ + + LWDT
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT----VFDNFSANVVVNGATVNLGLWDT 63
Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
+G + + P R I F
Sbjct: 64 AGQEDYNRLRPLSYRGADVFILAF 87
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 44.0 bits (104), Expect = 2e-06
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDTS 61
+K +++G GKT L + EY PT + ++D ++L DT+
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT----AFDNFSAVVSVDGRPVRLQLCDTA 76
Query: 62 GDHKFESVWPAFQRDVHGIIFVF 84
G +F+ + P + + F
Sbjct: 77 GQDEFDKLRPLCYTNTDIFLLCF 99
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 43.7 bits (104), Expect = 2e-06
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K +I+G + GK+ L + + + T GV RI+E + K ++++WD
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE------VSGQKIKLQIWD 70
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G +F +V ++ R G + V+
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALMVY 95
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 43.8 bits (104), Expect = 2e-06
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K L++G GK+ L + + ++ + T GV R+V + ++++WD
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN------VGGKTVKLQIWD 80
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G +F SV ++ R G + V+
Sbjct: 81 TAGQERFRSVTRSYYRGAAGALLVY 105
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 43.9 bits (104), Expect = 2e-06
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDTS 61
+KI+++G GKT L A Y PT + E H + + LWDT+
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPT----VFENFSHVMKYKNEEFILHLWDTA 79
Query: 62 GDHKFESVWPAFQRDVHGIIFVF 84
G +++ + P D ++ F
Sbjct: 80 GQEEYDRLRPLSYADSDVVLLCF 102
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 43.8 bits (104), Expect = 2e-06
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIEL--WDTS 61
K++++G GKT ++Y T GV + H T++ I+ WDT+
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVFHTNRGPIKFNVWDTA 72
Query: 62 GDHKFESVWPAFQRDVHGIIFVF 84
G KF + + I +F
Sbjct: 73 GQEKFGGLRDGYYIQAQCAIIMF 95
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 43.7 bits (104), Expect = 2e-06
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K+L++G GKT D + + T G+ + V + ++++W
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVY------RHDKRIKLQIW 76
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G ++ ++ A+ R G + ++
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMY 102
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 43.8 bits (104), Expect = 3e-06
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
KI+++G GKT L T GV + VE ++ K ++++W
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE------INGEKVKLQIW 80
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F S+ ++ R + +I +
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTY 106
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 43.4 bits (103), Expect = 3e-06
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTS----KTE 54
IK L LG GKT + D ++ T G+ + V + +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVF 84
++LWDT+G +F S+ AF RD G + +F
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLF 101
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 43.6 bits (103), Expect = 3e-06
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWD 59
++ K++++G GKT L E Y PT + E +D + E+ LWD
Sbjct: 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPT----VFENYVADIEVDGKQVELALWD 79
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ + P D I+ F
Sbjct: 80 TAGQEDYDRLRPLSYPDTDVILMCF 104
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 43.9 bits (104), Expect = 3e-06
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
KI+++G GK+ L + + T GV R +E ++ + + ++WD
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLE------IEGKRIKAQIWD 68
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ ++ A+ R G + V+
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVY 93
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 43.4 bits (103), Expect = 3e-06
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K++++G GKT + +E T GV + +E + + ++++W
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLE------IQGKRVKLQIW 83
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ ++ R +G I +
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAY 109
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 43.3 bits (103), Expect = 3e-06
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K L++G GK+ L + + ++ + T GV +I+ + ++++WD
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN------VGGKYVKLQIWD 65
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G +F SV ++ R G + V+
Sbjct: 66 TAGQERFRSVTRSYYRGAAGALLVY 90
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 43.2 bits (102), Expect = 3e-06
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
IK+++LG GK+ + AE PT G + V ++ + E+
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT------INEHTVKFEI 56
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFN 85
WDT+G +F S+ P + R+ + V++
Sbjct: 57 WDTAGQERFASLAPXYYRNAQAALVVYD 84
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 43.4 bits (103), Expect = 3e-06
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
+KILI+G GK+ L D T E T GV + + +D +K ++ +W
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS------VDGNKAKLAIW 69
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ P++ R G+I V+
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVY 95
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 42.9 bits (102), Expect = 4e-06
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
+ K+++LG GK+ L E T G + V LD + + E+
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVC------LDDTTVKFEI 59
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
WDT+G ++ S+ P + R I V+
Sbjct: 60 WDTAGQERYHSLAPMYYRGAQAAIVVY 86
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 43.4 bits (103), Expect = 4e-06
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
KILI+G GKT D + + T G+ + + + + ++++W
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY------RNDKRIKLQIW 62
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G ++ ++ A+ R G I ++
Sbjct: 63 DTAGLERYRTITTAYYRGAMGFILMY 88
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 43.0 bits (102), Expect = 4e-06
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
K++ILG GKT LA+ + +E Y PT + E++Y+ L + + L D
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPT----V---ENTYSKIVTLGKDEFHLHLVD 78
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ + +F VHG + V+
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVY 103
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 43.0 bits (102), Expect = 4e-06
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
+K++ILG GKT L N + + +Y T G + V +D +++W
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM------VDDRLVTMQIW 62
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F+S+ AF R + VF
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVF 88
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 43.2 bits (102), Expect = 4e-06
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 18/92 (19%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
+ I+I GP +GKT L L T +Q A D + + L
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQE-------PLSAADYDGSGVTLV 96
Query: 59 DTSGDHKFESVW----PAFQRDVHGIIFVFNS 86
D G K + V G+IF+ +S
Sbjct: 97 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS 128
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 42.8 bits (101), Expect = 5e-06
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
IK +++G GKT L + EY PT + + + +D + LWDT
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT----VFDNYSANVMVDGKPVNLGLWDT 85
Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
+G ++ + P + F
Sbjct: 86 AGQEDYDRLRPLSYPQTDVFLICF 109
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 42.5 bits (100), Expect = 7e-06
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWD 59
+ +K +++G GKT L + + EEY PT + + S + + + L+D
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT----VFDHYAVSVTVGGKQYLLGLYD 72
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G ++ + P + F
Sbjct: 73 TAGQEDYDRLRPLSYPMTDVFLICF 97
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 42.1 bits (100), Expect = 7e-06
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
K+++LG GK+ L T E+Y PT I E Y +D+S + +E+ D
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPT----I---EDFYRKEIEVDSSPSVLEILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G +F S+ + ++ G I V+
Sbjct: 58 TAGTEQFASMRDLYIKNGQGFILVY 82
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 42.2 bits (100), Expect = 7e-06
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
+ K++I+G AGKT + + T+ PT G V + T
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTS----PTIGSNVEEIVIN--------NTRFL 63
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
+WD G S W + + +I V +S IS
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISV 101
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 42.6 bits (101), Expect = 7e-06
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQG--VRIVECEHSYALDTSKTEIELWD 59
++++ ++G +GKT N + E+ PT G +R + + I+LWD
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN--------VTIKLWD 73
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNS 86
G +F S+W + R V I+++ ++
Sbjct: 74 IGGQPRFRSMWERYCRGVSAIVYMVDA 100
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 42.1 bits (100), Expect = 7e-06
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
K++++G GK+ L +Y PT I E SY +D +++ D
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPT----I---EDSYTKICSVDGIPARLDILD 63
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G +F ++ + R HG + VF
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVF 88
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 42.1 bits (100), Expect = 7e-06
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
K++++G GK+ LA L + E +Y +D + + ++D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS------EDTYERRIMVDKEEVTLIVYD 57
Query: 60 TSGDHKFESVWP-AFQRDVHGIIFVF 84
+ + VF
Sbjct: 58 IWEQGDAGGWLQDHCLQTGDAFLIVF 83
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 42.1 bits (100), Expect = 7e-06
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
++KI++LG +GKT L T ++Y T G+ R + +++
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP-----GNLNVTLQI 60
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
WD G + + G++ V+
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVY 87
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 42.1 bits (100), Expect = 8e-06
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K+++LG GK+ L E+Y PT I E SY +D + +E+ D
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPT----I---EDSYRKQVEVDCQQCMLEILD 57
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G +F ++ + ++ G V+
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVY 82
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 42.2 bits (100), Expect = 9e-06
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L ++Y PT I E SY +D +++ D
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPT----I---EDSYLKHTEIDNQWAILDVLD 72
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G +F ++ + R G + V+
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVY 97
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 41.7 bits (99), Expect = 9e-06
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV---RIVECEHSYALDTSKTEIELWDT 60
K++++G GK+ L E+Y PT+ + V LD + +I++ DT
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV------LDGEEVQIDILDT 59
Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
+G + ++ + R G + VF
Sbjct: 60 AGQEDYAAIRDNYFRSGEGFLCVF 83
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 41.7 bits (99), Expect = 9e-06
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELWD 59
K+++LG GK+ L N + T GV + +E +D +++WD
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE------VDGHFVTMQIWD 62
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G +F S+ F R + F
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTF 87
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 41.8 bits (99), Expect = 1e-05
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
++K+ I+G + +GK+ L + T +E P G E +D + + D
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIV----VDGQSYLLLIRDEG 75
Query: 62 GDHKFESVWPAFQRDVHGIIFVF 84
G + + F V ++FVF
Sbjct: 76 GPPELQ-----FAAWVDAVVFVF 93
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 42.1 bits (99), Expect = 1e-05
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 18/92 (19%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
+ I+I GP +GKT L L T +Q A D + + L
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQE-------PLSAADYDGSGVTLV 60
Query: 59 DTSGDHKFESVW----PAFQRDVHGIIFVFNS 86
D G K + V G+IF+ +S
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS 92
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 41.8 bits (99), Expect = 1e-05
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIE 56
++K+ +LG GK+ + PT G + V +
Sbjct: 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVP------CGNELHKFL 75
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVF 84
+WDT+G +F S+ P + R + V+
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVY 103
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 41.5 bits (98), Expect = 2e-05
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
+++IL++G AGKT + L +TT PT G V VE +
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYK--------NICFT 76
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
+WD G K +W + ++ G+IFV +S
Sbjct: 77 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 106
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 41.0 bits (97), Expect = 2e-05
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 3 IKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIEL 57
++IL++G AGKT + L +TT PT G V VE ++ +
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKN--------ISFTV 48
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
WD G K +W + ++ G+IFV +S
Sbjct: 49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 41.4 bits (98), Expect = 2e-05
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L E+Y PT SY LD + +I++ D
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT----K---ADSYRKKVVLDGEEVQIDILD 72
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G + ++ + R G + VF
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVF 97
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 41.1 bits (97), Expect = 2e-05
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
++++I+G GKT L D T E T GV + VE L K +++W
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE------LRGKKIRLQIW 80
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F S+ A+ R GII V+
Sbjct: 81 DTAGQERFNSITSAYYRSAKGIILVY 106
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 40.9 bits (97), Expect = 2e-05
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
++K+ +LG GK+ + + + +PT G + V+ + +
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ------YQNELHKFLI 59
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
WDT+G +F ++ P + R I V+
Sbjct: 60 WDTAGLERFRALAPMYYRGSAAAIIVY 86
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 41.0 bits (97), Expect = 2e-05
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
KI+++G GKT L C + T GV R V+ +D + +I+LW
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD------IDGERIKIQLW 74
Query: 59 DTSGDHKF-ESVWPAFQRDVHGIIFVF 84
DT+G +F +S+ + R+VH ++FV+
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVY 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 41.1 bits (97), Expect = 2e-05
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
KI++L+LG AGKT + L +TT PT G + ++ + E
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTTV----PTVGVNLETLQYK--------NISFE 69
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
+WD G W + D +I+V +S
Sbjct: 70 VWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 41.0 bits (97), Expect = 2e-05
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 17/90 (18%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
+++IL+LG AGKT L L PTQG ++ V+ + ++
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHIT----PTQGFNIKSVQSQ--------GFKLN 63
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
+WD G K W ++ + +I+V +S
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVIDS 93
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 41.1 bits (97), Expect = 2e-05
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIELWD 59
K++++G GK+ L E+Y PT SY LD + +I++ D
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT----K---ADSYRKKVVLDGEEVQIDILD 68
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVF 84
T+G + ++ + R G + VF
Sbjct: 69 TAGQEDYAAIRDNYFRSGEGFLCVF 93
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 41.0 bits (97), Expect = 2e-05
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIE 56
+ K+++LG + AGK+ L E T G + + ++ + + E
Sbjct: 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA------VNDATVKFE 64
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVF 84
+WDT+G ++ S+ P + R I VF
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVF 92
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 40.6 bits (96), Expect = 2e-05
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGV----RIVECEHSYALDTSKTEIELW 58
K+++LG GKT L C+ +++ T G + + + + + +W
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN------IGGKRVNLAIW 60
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G +F ++ P + RD +G I V+
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVY 86
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 40.6 bits (96), Expect = 3e-05
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 3 IKILILGPIMAGKTVLANALCDLT-TAEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
K++++G GKT L D A + T G+ ++++ +D K ++++
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD------VDGVKVKLQM 64
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
WDT+G +F SV A+ RD H ++ ++
Sbjct: 65 WDTAGQERFRSVTHAYYRDAHALLLLY 91
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 40.7 bits (96), Expect = 3e-05
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 3 IKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIEL 57
++ILILG AGKT + L +TT PT G V + ++ ++ +
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKN--------LKLNV 66
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
WD G W + D +IFV +S
Sbjct: 67 WDLGGQTSIRPYWRCYYADTAAVIFVVDS 95
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGV---RIVECEHSYALDTSKTEIELWDT 60
K+L+LG GK+ LA G R + +D + + ++D
Sbjct: 4 KVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTYDRSIV------VDGEEASLMVYDI 56
Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
+ + V+
Sbjct: 57 WEQDGGRWLPGHCMAMGDAYVIVY 80
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 40.4 bits (95), Expect = 4e-05
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 4 KILILGPIMAGKTVLANALCDLTT--AEEYHPTQGV----RIVECEHSYALDTSKTEIEL 57
K+ ++G GK+ L + + ++Y T GV V + T E+ L
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT----TVSVELFL 77
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVF 84
DT+G ++ + V+ I VF
Sbjct: 78 LDTAGSDLYKEQISQYWNGVYYAILVF 104
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 40.0 bits (94), Expect = 5e-05
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
KI ++G GKT N + D + Y+ T G + + + +WDT+G
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 64 HKFESVWPAFQRDVHGIIFVF 84
K + + G I F
Sbjct: 72 EKKAVLKDVYYIGASGAILFF 92
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 39.9 bits (94), Expect = 6e-05
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 4 KILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYA----LDTSKTEIELWD 59
K++++G GK+ LA L + P E +Y +D + + ++D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP------EDTYERRIMVDKEEVTLVVYD 78
Query: 60 TSGDHKFESVWP-AFQRDVHGIIFVF 84
+ + VF
Sbjct: 79 IWEQGDAGGWLRDHCLQTGDAFLIVF 104
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 39.9 bits (94), Expect = 6e-05
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
+ K++I+G AGKT + + T+ PT G V + T
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTS----PTIGSNVEEIVIN--------NTRFL 68
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISE 94
+WD G S W + + +I V +S IS
Sbjct: 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISV 106
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 39.7 bits (93), Expect = 6e-05
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 3 IKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDTS 61
IK +++G GKT L + EY P + + + +D + LWDT+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----TVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 62 GDHKFESVWPAFQRDVHGIIFVF 84
G ++ + P + F
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICF 84
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 40.0 bits (94), Expect = 6e-05
Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 18/134 (13%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVEC-EHSYALDTSKTEIELWDT 60
IK + +G GKT + +Y PT + + + A+D + LWDT
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----VFDNFSANVAVDGQIVNLGLWDT 64
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPG--------HISELLLFYDYF----V-TQSD 107
+G + + P R + F+ + EL F V T+ D
Sbjct: 65 AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124
Query: 108 LNNHKCLLIDNVKP 121
L + K L D+
Sbjct: 125 LRDDKGYLADHTNV 138
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 39.5 bits (93), Expect = 6e-05
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQG--VRIVECEHSYALDTSKTEIELWD 59
++++L+LG AGKT + + PT G ++ +E ++ +WD
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLGFNIKTLEHR--------GFKLNIWD 68
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNS 86
G S W + G+I+V +S
Sbjct: 69 VGGQKSLRSYWRNYFESTDGLIWVVDS 95
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 39.5 bits (93), Expect = 7e-05
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
+++ILILG AGKT + L +TT PT G V V ++ + +
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVVTTI----PTIGFNVETVTYKN--------LKFQ 54
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
+WD G W + + +I+V +S
Sbjct: 55 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 39.5 bits (93), Expect = 8e-05
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIE 56
+++ + ILG AGK+ L EY P + E +Y +D +
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPN----L---EDTYSSEETVDHQPVHLR 72
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVF 84
+ DT+ + H + V+
Sbjct: 73 VMDTADLDTPRNCERYL-NWAHAFLVVY 99
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 39.2 bits (92), Expect = 1e-04
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
K++ LG AGKT L + L D PT E L + +
Sbjct: 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHV----PTLH-PTSE-----ELTIAGMTFTTF 74
Query: 59 DTSGDHKFESVWPAFQRDVHGIIFVFNS 86
D G + VW + ++GI+F+ +
Sbjct: 75 DLGGHIQARRVWKNYLPAINGIVFLVDC 102
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 39.2 bits (92), Expect = 1e-04
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 2 KIKILILGPIMAGKTVLANAL-----CDLTTAEEYHPTQG--VRIVECEHSYALDTSKTE 54
++ +L LG +GKT + N L PT G + + S
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL----PTIGFSIEKFKS--------SSLS 68
Query: 55 IELWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
++D SG ++ ++W + ++ IIFV +S
Sbjct: 69 FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDS 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 1e-04
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 26/122 (21%)
Query: 5 ILILGPIMAG--KTVLANALCDLTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE-LWD 59
+LI G + G KT +A +C + + + + C ++ +T +E L
Sbjct: 153 VLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC------NSPETVLEMLQK 204
Query: 60 TSGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLLI-DN 118
++ + W + I +S + + LL Y CLL+ N
Sbjct: 205 LL--YQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPY---------ENCLLVLLN 252
Query: 119 VK 120
V+
Sbjct: 253 VQ 254
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 38.7 bits (91), Expect = 2e-04
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 2 KIKILILGPIMAGKTVLANALCD---LTTAEEYHPTQG--VRIVECEHSYALDTSKTEIE 56
K+L LG AGKT L + L + T PT + +
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIG--------NIKFT 70
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
+D G + +W + +V+GI+F+ ++
Sbjct: 71 TFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 36.3 bits (84), Expect = 0.001
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 2 KIKILILGPIMAGKTV-LANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
++ L + + + V I ++Y + + ++WDT
Sbjct: 45 CTYVVNLN----DINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDT 100
Query: 61 SGDHKFESVWPAFQRDVHGIIFVF 84
+G ++ S+ P + R I VF
Sbjct: 101 AGQERYASIVPLYYRGATCAIVVF 124
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 34.5 bits (80), Expect = 0.005
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY----ALDTSKTEIE 56
++K+ I G GK+ L EY PT + E +Y +D +E
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT----L---ESTYRHQATIDDEVVSME 79
Query: 57 LWDTSGDHKFESVWPAFQRDVHGIIFVF 84
+ DT+G R G + V+
Sbjct: 80 ILDTAGQEDT-IQREGHMRWGEGFVLVY 106
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 33.5 bits (76), Expect = 0.012
Identities = 9/88 (10%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEE---YHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+L++G GK+ + + + T + ++ ++ + +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-------STLIDLAVMELP 54
Query: 62 GDHKFESVWPAFQ---RDVHGIIFVFNS 86
G + + + V +++V +S
Sbjct: 55 GQLNYFEPSYDSERLFKSVGALVYVIDS 82
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.4 bits (73), Expect = 0.038
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 5 ILILGPIMAGKTVLANALC--DLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG 62
IL +G GK+ L + L H GV++ + + ++ + T G
Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 30.9 bits (69), Expect = 0.093
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 1 MKIKILIL-GPIMAGKTVLANALCDLTTAEEYH 32
M +++IL G AGK+ + L +
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 29.6 bits (66), Expect = 0.22
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 3 IKILILGPIMAGKTVLANALCD--------LTTAEEYHPTQGVRIVECEHSYALDTSKTE 54
+KI+I G GKT L + + T E P R + K
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRT--GFRIITTEGKKKI 58
Query: 55 IELWDTSGDHK 65
+
Sbjct: 59 FSSKFFTSKKL 69
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 29.6 bits (65), Expect = 0.31
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 24 DLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSG---DHKFESVWPAFQRDVHGI 80
+ E+ + Y L + IE+ D+ G + + + H I
Sbjct: 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAI 204
Query: 81 IFVFNSGVPGHISELLLFYDY 101
+FV + P + E +Y
Sbjct: 205 LFVMRASQPCTLGERRYLENY 225
Score = 27.3 bits (59), Expect = 1.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 2 KIKILILGPIMAGKTVLANALC 23
++L+LG + GK+ NAL
Sbjct: 69 VFRLLVLGDMKRGKSTFLNALI 90
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 28.8 bits (65), Expect = 0.44
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECE 43
I++ G +GKT L AL ++ R++ E
Sbjct: 178 IVVAGETGSGKTTLMKALMQEIPFDQ-------RLITIE 209
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 29.1 bits (65), Expect = 0.44
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 33 PTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
PT G + E+ +WD G K +W + ++ G+IFV +S
Sbjct: 195 PTIGFNVETVEYK------NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.8 bits (64), Expect = 0.46
Identities = 24/98 (24%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSK---TEIELWDTS 61
IL AGK+ A L EY V I++ E Y K I
Sbjct: 38 WTILAKPGAGKSFTAKMLL----LREYMQGSRVIIIDPEREYKEMCRKLGGVWINCTGGE 93
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFY 99
G V + VF S + HI L F+
Sbjct: 94 GKINPLQVRLRPVEEEDEENAVFQSPLALHIQTLRTFF 131
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 28.5 bits (64), Expect = 0.55
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECE 43
+++ G +GKT ++ + EE RI+ E
Sbjct: 174 VIVCGGTGSGKTTYIKSIMEFIPKEE-------RIISIE 205
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 28.4 bits (63), Expect = 0.66
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
+L+ GP GKT LA A+ A+E + Y+ + KTE+ +
Sbjct: 66 VLLAGPPGTGKTALALAI-----AQELGSKVPFCPMVGSEVYSTEIKKTEVLME 114
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.1 bits (62), Expect = 0.78
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 4/114 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
+++++G AGK+ N++ V S D K +E+ DT
Sbjct: 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVEVVDT 77
Query: 61 SGDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCL 114
F S + PG + LL+ T D + +
Sbjct: 78 PD--IFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQV 129
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 27.9 bits (62), Expect = 1.0
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 1 MKIKILILGPIMAGKTVLANALC---DLTTAEEYHPTQGVRIVECEHSYALDTSKTEIEL 57
+++IL+LG AGKT + L +TT PT G + + + +
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI----PTVGFNVETVTYK------NVKFNV 370
Query: 58 WDTSGDHKFESVWPAFQRDVHGIIFVFNS 86
WD G K +W + G+IFV +
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 27.4 bits (61), Expect = 1.1
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 1 MKIKILILGPIMAGKTVLANAL-----CDLTTAEEYHPTQ 35
M + I++ GP K+ +A L + + +
Sbjct: 1 MTL-IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAK 39
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 27.5 bits (61), Expect = 1.2
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAE 29
M + LI GP +GKT +A + T
Sbjct: 1 MLL-HLIYGPTCSGKTDMAIQIAQETGWP 28
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 27.7 bits (61), Expect = 1.2
Identities = 14/61 (22%), Positives = 22/61 (36%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+ + + G +GK+ N L + EE GV V E + + WD
Sbjct: 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLP 128
Query: 62 G 62
G
Sbjct: 129 G 129
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 27.7 bits (61), Expect = 1.3
Identities = 14/116 (12%), Positives = 36/116 (31%), Gaps = 3/116 (2%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64
L+LG GK+ + + + +R E + + E++
Sbjct: 33 TLVLGLRRTGKSSIIKIGINE--LNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVK 90
Query: 65 KFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLL-IDNV 119
+ S+ A + +I + + L F + + + ++ +D
Sbjct: 91 RLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEA 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 27.0 bits (59), Expect = 1.8
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 5 ILILGPIMAGKTVLANALC------DLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELW 58
++++G GK+ L N+L + + V++ + + + + +
Sbjct: 11 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIV 70
Query: 59 DTSG 62
DT G
Sbjct: 71 DTPG 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 27.2 bits (60), Expect = 2.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 5 ILILGPIMAGKTVLANALCDL 25
+ +GP GK++L N+L
Sbjct: 129 LAFIGPPNTGKSMLCNSLIHF 149
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 26.8 bits (59), Expect = 2.1
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 1 MKIKILILGPIMAGKTVLANALCDL 25
+K+ ILI G +GK+ A L +
Sbjct: 1 IKV-ILITGMPGSGKSEFAKLLKER 24
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 26.8 bits (59), Expect = 2.1
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 1 MKIKILILGPIMAGKTVLANALCD 24
MK +I GP GK+ L
Sbjct: 1 MKKLYIITGPAGVGKSTTCKRLAA 24
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 26.9 bits (59), Expect = 2.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 4 KILILGPIMAGKTVLANALCD 24
KI I G + AGK+ ++ +
Sbjct: 2 KIAIFGTVGAGKSTISAEISK 22
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 26.7 bits (60), Expect = 2.5
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 1 MKIKIL-ILGPIMAGKTVLANALC 23
MK K++ I+GP GKT + L
Sbjct: 1 MKEKLVAIVGPTAVGKTKTSVMLA 24
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 26.7 bits (59), Expect = 2.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECE 43
+++G +GKT NA+ + ++V E
Sbjct: 263 AIVVGETASGKTTTLNAIMMFIPPDA-------KVVSIE 294
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 26.5 bits (58), Expect = 2.9
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 48 LDTSKTEIELWDTSGDHKFESVWPAFQRDVHGIIFVF 84
+D + LWDT+G ++ + P + F
Sbjct: 198 VDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICF 234
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 26.4 bits (57), Expect = 3.0
Identities = 10/107 (9%), Positives = 25/107 (23%), Gaps = 3/107 (2%)
Query: 5 ILILGPIMAGKTVLANALC-DLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGD 63
I + K L N + +L T+ + + ++W
Sbjct: 48 FYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISK 107
Query: 64 HKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNN 110
+ + I L+ + +++ L
Sbjct: 108 ENLCGDISLEALNFYITNVPKAKKRKTLI--LIQNPENLLSEKILQY 152
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 26.5 bits (58), Expect = 3.2
Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 1 MKIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDT 60
+++I+++G AGK+ N++ + + + S + ++ + + DT
Sbjct: 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDT 85
Query: 61 SG 62
G
Sbjct: 86 PG 87
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 26.6 bits (58), Expect = 3.2
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 5/114 (4%)
Query: 2 KIKILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTS 61
+++I+++G GK+ N++ E +Q + + + EI + DT
Sbjct: 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTP 79
Query: 62 GDHKFESVWPAFQRDVHGIIFVFNSGVPGHISELLLFYDYFVTQSDLNNHKCLL 115
F S H+ LL+ T D + +
Sbjct: 80 D--MFSWKDHCEALYKEVQRCYLLSAPGPHVL-LLVTQLGRYTSQDQQAAQRVK 130
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A
{Enterococcus faecalis}
Length = 418
Score = 26.6 bits (59), Expect = 3.2
Identities = 7/16 (43%), Positives = 7/16 (43%), Gaps = 5/16 (31%)
Query: 20 NALCDLTTAEEYHPTQ 35
N CD HPTQ
Sbjct: 158 NLQCD-----IDHPTQ 168
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 26.3 bits (58), Expect = 3.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 5 ILILGPIMAGKTVLANALCDL 25
+L+ G GK+ AL L
Sbjct: 48 VLVFGDRGTGKSTAVRALAAL 68
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia
coli}
Length = 399
Score = 26.2 bits (58), Expect = 3.5
Identities = 7/16 (43%), Positives = 7/16 (43%), Gaps = 5/16 (31%)
Query: 20 NALCDLTTAEEYHPTQ 35
N CD HPTQ
Sbjct: 161 NLQCD-----IDHPTQ 171
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 26.2 bits (57), Expect = 4.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 2 KIKILILGPIMAGKTVLANALCD 24
+LI G I +GKT N
Sbjct: 20 PFTVLIEGNIGSGKTTYLNHFEK 42
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 26.0 bits (56), Expect = 4.2
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHP 33
I I G I AGK+ N L L E P
Sbjct: 27 ISIEGNIAAGKSTFVNILKQLCEDWEVVP 55
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 26.2 bits (57), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 5 ILILGPIMAGKTVLANALCDL 25
L GPI +GKT LA AL +L
Sbjct: 172 WLFKGPIDSGKTTLAAALLEL 192
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid,
biosynthesis, plant protein; HET: NAP; 1.70A {Medicago
sativa}
Length = 312
Score = 26.0 bits (58), Expect = 4.5
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 6/26 (23%)
Query: 50 TSKTEIELWDTSGDHKFESVWPAFQR 75
TSK LW T ++ V PA Q+
Sbjct: 85 TSK----LWVT--ENHPHLVIPALQK 104
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 26.0 bits (57), Expect = 4.6
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64
I + G +GK+ + + L E Q ++ + S+ + + G
Sbjct: 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAK-ALKGQF 83
Query: 65 KFES 68
F+
Sbjct: 84 NFDH 87
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 25.9 bits (56), Expect = 4.8
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 2 KIKILILGPIMAGKTVLANALC-------DLTTAEEYHPTQGVRIVECEHSYALDTSKTE 54
+ ++++G GK+ L N+L + + + V+I K
Sbjct: 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77
Query: 55 IELWDTSGDHKFESVWPAFQ 74
+ + DT G + F+
Sbjct: 78 LTVVDTPGYGDAINCRDCFK 97
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 25.7 bits (57), Expect = 5.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 5 ILILGPIMAGKTVLANAL 22
IL++GP +GKT++A L
Sbjct: 75 ILLIGPTGSGKTLMAQTL 92
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 25.9 bits (57), Expect = 5.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 5 ILILGPIMAGKTVLANAL 22
+L+ GP +GKT LA +
Sbjct: 67 VLLEGPPHSGKTALAAKI 84
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 25.6 bits (57), Expect = 5.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 5 ILILGPIMAGKTVLANAL 22
IL++GP +GKT+LA L
Sbjct: 54 ILLIGPTGSGKTLLAETL 71
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 25.4 bits (55), Expect = 5.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYH 32
+L+ G +GK+ +A AL +L + H
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVPKVH 39
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 25.3 bits (55), Expect = 6.1
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 5 ILILGPIMAGKTVLANALCD-LTTAEEYHP 33
I I GP GKT A+ L + L + + P
Sbjct: 8 IWINGPFGVGKTHTAHTLHERLPGSFVFEP 37
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 25.5 bits (55), Expect = 6.1
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHP 33
+ I G I GK+ L
Sbjct: 5 LSIEGNIAVGKSTFVKLLTKTYPEWHVAT 33
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 25.5 bits (56), Expect = 6.6
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 5 ILILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSYALDTSKTEIELWDTSGDH 64
I + G +GK+ + + +L E Q ++ + + + + G +
Sbjct: 28 IGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAK-ALKGQY 86
Query: 65 KFES 68
F+
Sbjct: 87 NFDH 90
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 113
Score = 25.0 bits (54), Expect = 7.0
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 32 HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWP 71
PT+ SY L ++ +ELW WP
Sbjct: 16 RPTEASERCHLRGSYTLRAGESALELWGGPEPGTQLYDWP 55
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 25.3 bits (55), Expect = 7.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 5 ILILGPIMAGKTVLANALCDL 25
I + GP GKT +A A+
Sbjct: 107 IWLFGPATTGKTNIAEAIAHT 127
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 25.5 bits (56), Expect = 8.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 5 ILILGPIMAGKTVLANALC 23
IL+ GP GKT++A A+
Sbjct: 241 ILLYGPPGTGKTLIARAVA 259
>2jek_A RV1873; structural genomics, unknown function, hypothetical
protein, right-handed superhelix, TB structural genomics
consortium; 1.38A {Mycobacterium tuberculosis} SCOP:
a.255.1.1
Length = 145
Score = 24.8 bits (54), Expect = 8.9
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 21 ALCDLTTAEEY--HPTQGVRIVECEHSYALDTSKTEIELWDTSGDHKFESVWPAFQR 75
+ L A+ Y H G R+ EC ++ E++ D K S F R
Sbjct: 58 GISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDDLKLCSSMTLFAR 114
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 25.3 bits (56), Expect = 9.2
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 7 ILGPIMAGKTVLANALCDLTTAEEYHPTQGVRIVECEHSY-----ALDTSKTEIELWDTS 61
I+GP GKT L + PT+G + +Y + T EL
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKI 441
Query: 62 GDHKFESVWPAFQRDV 77
K S ++ ++
Sbjct: 442 DSSKLNS--NFYKTEL 455
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 25.2 bits (55), Expect = 10.0
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 7 ILGPIMAGKT----VLANALCDLT 26
++G GKT + +A+
Sbjct: 928 LVGKAGCGKTATWKTVIDAMAIFD 951
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,051,110
Number of extensions: 107335
Number of successful extensions: 513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 164
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.7 bits)