BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10118
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 178/365 (48%), Gaps = 63/365 (17%)
Query: 103 IDTAALIELWGYKSEEHKVTTEDGYIISLYRILPKQEGS------PPVLVMHGFLACSET 156
++ + +I WGY +EE++V TEDGYI+ + RI ++ S P V + HG LA S T
Sbjct: 6 MNISQMITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLA-SAT 64
Query: 157 FLVRGKPD--LAIMLSEAGYDVWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLP 214
+ P+ LA +L++AGYDVWL N RGN + ++ + + FW FSF EM YDLP
Sbjct: 65 NWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLP 124
Query: 215 AFVDFILHRTGFMKMTLLGHSFSNAIIMIMTSLRPEYNEKINLFVGMAP----------- 263
A +DFI+ +TG ++ +GHS I I S P ++I F +AP
Sbjct: 125 ATIDFIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIKTFYALAPVATVKYTKSLI 184
Query: 264 ------------FVFASHL-------RQGPLLEFLIKSVSNLVPSINGYF---------- 294
F+F + Q E + + NL+ S N F
Sbjct: 185 NKLRFVPQSLFKFIFGDKIFYPHNFFDQFLATEVCSREMLNLLCS-NALFIICGFDSKNF 243
Query: 295 ------------PSGTSLYTMAHLIDLYRQRRFCQFDYGRD-QNLLRYNSEEPPDYDLSR 341
P+GTS+ M H + +F +D+G QN + Y+ +PP Y+++
Sbjct: 244 NTSRLDVYLSHNPAGTSVQNMFHWTQAVKSGKFQAYDWGSPVQNRMHYDQSQPPYYNVTA 303
Query: 342 VTIPILLYSGGADFFTDSRDVTRLEMSLPNLIGSHVLTTYNHFDFVISSDTKEVFYDDMM 401
+ +PI +++GG D D +DV L LPNLI + YNH DF+ + D + Y+D++
Sbjct: 304 MNVPIAVWNGGKDLLADPQDVGLLLPKLPNLIYHKEIPFYNHLDFIWAMDAPQEVYNDIV 363
Query: 402 EVVAK 406
++++
Sbjct: 364 SMISE 368
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 175/363 (48%), Gaps = 61/363 (16%)
Query: 103 IDTAALIELWGYKSEEHKVTTEDGYIISLYRILPKQEGS------PPVLVMHGFLACSET 156
++ + +I WGY +EE++V TEDGYI+ + RI ++ S P + HG LA S T
Sbjct: 14 MNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLA-SAT 72
Query: 157 FLVRGKPD--LAIMLSEAGYDVWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLP 214
+ P+ LA +L++AGYDVWL N RGN + ++ + + FW FSF EM YDLP
Sbjct: 73 NWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLP 132
Query: 215 AFVDFILHRTGFMKMTLLGHSFSNAI--------------IMIMTSLRP----EYNEK-I 255
A +DFIL +TG K+ +GHS I I +L P +Y E I
Sbjct: 133 ATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTETLI 192
Query: 256 NLFVGMAPFVF-------------------ASHLRQGPLLEFLIKSVSNLVPSIN----- 291
N + + F+F A+ + ++ L + ++ +
Sbjct: 193 NKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLN 252
Query: 292 --------GYFPSGTSLYTMAHLIDLYRQRRFCQFDYGRD-QNLLRYNSEEPPDYDLSRV 342
+ P+GTS+ + H + +F FD+G QN++ Y+ PP Y+L+ +
Sbjct: 253 MSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDM 312
Query: 343 TIPILLYSGGADFFTDSRDVTRLEMSLPNLIGSHVLTTYNHFDFVISSDTKEVFYDDMME 402
+PI +++GG D D DV L LPNLI + YNH DF+ + D + Y++++
Sbjct: 313 HVPIAVWNGGNDLLADPHDVDLLLSKLPNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVS 372
Query: 403 VVA 405
++
Sbjct: 373 MMG 375
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 31/254 (12%)
Query: 114 YKSEEHKVTTEDGYIISLYRILPKQEGSPPVL--VMHGFLACSETFLVRGKPDLAIMLSE 171
Y+ H V + Y+ Y K G+P L V HG S + +LA ML
Sbjct: 33 YQDLPHLVNADGQYLFCRYW---KPTGTPKALIFVSHGAGEHSGRY-----EELARML-- 82
Query: 172 AGYDVWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLPAFVDFILHRTGFMKMTL 231
G D+ + F ++ G G +E E FH + D+ VD + + + L
Sbjct: 83 MGLDLLV--FAHDHVGHGQ----SEGERMVVSDFHVF-VRDVLQHVDSMQKDYPGLPVFL 135
Query: 232 LGHSFSNAIIMIMTSLRPEYNEKINLFVGM---APFVFASHLRQGPLLEFLIKSVSNLVP 288
LGHS AI ++ + RP + F GM +P V A+ + L V NLV
Sbjct: 136 LGHSMGGAIAILTAAERPGH------FAGMVLISPLVLANP-ESATTFKVLAAKVLNLVL 188
Query: 289 SINGYFPSGTSLYTMAHL-IDLYRQRRF-CQFDYGRDQNLLRYNSEEPPDYDLSRVTIPI 346
P +S+ + +D+Y C+ + N+ + L ++T+P
Sbjct: 189 PNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPF 248
Query: 347 LLYSGGADFFTDSR 360
LL G AD DS+
Sbjct: 249 LLLQGSADRLCDSK 262
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 31/254 (12%)
Query: 114 YKSEEHKVTTEDGYIISLYRILPKQEGSPPVL--VMHGFLACSETFLVRGKPDLAIMLSE 171
Y+ H V + Y+ Y K G+P L V HG S + +LA ML
Sbjct: 34 YQDLPHLVNADGQYLFCRYW---KPTGTPKALIFVSHGAGEHSGRY-----EELARML-- 83
Query: 172 AGYDVWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLPAFVDFILHRTGFMKMTL 231
G D+ + F ++ G G +E E FH + D+ VD + + + L
Sbjct: 84 MGLDLLV--FAHDHVGHGQ----SEGERMVVSDFHVF-VRDVLQHVDSMQKDYPGLPVFL 136
Query: 232 LGHSFSNAIIMIMTSLRPEYNEKINLFVGM---APFVFASHLRQGPLLEFLIKSVSNLVP 288
LGHS AI ++ + RP + F GM +P V A+ + L V NLV
Sbjct: 137 LGHSMGGAIAILTAAERPGH------FAGMVLISPLVLANP-ESATTFKVLAAKVLNLVL 189
Query: 289 SINGYFPSGTSLYTMAHL-IDLYRQRRF-CQFDYGRDQNLLRYNSEEPPDYDLSRVTIPI 346
P +S+ + +D+Y C+ + N+ + L ++T+P
Sbjct: 190 PNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPF 249
Query: 347 LLYSGGADFFTDSR 360
LL G AD DS+
Sbjct: 250 LLLQGSADRLCDSK 263
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 29/253 (11%)
Query: 114 YKSEEHKVTTEDGYIISLYRILPKQEGSPPVL--VMHGFLACSETFLVRGKPDLAIMLSE 171
Y+ H V + Y+ Y G+P L V HG S + +LA ML
Sbjct: 16 YQDLPHLVNADGQYLFCRYW---APTGTPKALIFVSHGAGEHSGRY-----EELARML-- 65
Query: 172 AGYDVWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLPAFVDFILHRTGFMKMTL 231
G D+ + F ++ G G +E E FH + D+ VD + + + L
Sbjct: 66 MGLDLLV--FAHDHVGHGQ----SEGERMVVSDFHVF-VRDVLQHVDSMQKDYPGLPVFL 118
Query: 232 LGHSFSNAIIMIMTSLRPEYNEKINLFVGM---APFVFASHLRQGPLLEFLIKSVSNLVP 288
LGHS AI ++ + RP + F GM +P V A+ K +++++P
Sbjct: 119 LGHSMGGAIAILTAAERPGH------FAGMVLISPLVLANPESATTFKVLAAKVLNSVLP 172
Query: 289 SINGYFPSGTSLYTMAHLIDLYRQRRF-CQFDYGRDQNLLRYNSEEPPDYDLSRVTIPIL 347
+++ + L +D+Y C+ + N+ + L ++T+P L
Sbjct: 173 NLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFL 232
Query: 348 LYSGGADFFTDSR 360
L G AD DS+
Sbjct: 233 LLQGSADRLCDSK 245
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Query: 125 DGYIISLYRILPKQ--EGSPPVLVMHGFLACSETFLVRGKPDLAIMLSEAGYDVWLSNFR 182
DG ++ Y +PK E P +++HGF SE + + + E ++ ++ R
Sbjct: 9 DGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHI-------VAVQETLNEIGVATLR 61
Query: 183 GNYNGKGHINMTAEDENFWKFSFHEMGLYDLPAFVDFILHRTGFMKMTLLGHSFSNAIIM 242
+ G G + ED +K+ + + + D +DF+ + + GHS +M
Sbjct: 62 ADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFV------TDIYMAGHSQGGLSVM 115
Query: 243 IMTSLRPEYNEKINLFVGMAPFVFASHL-RQGPLL 276
+ ++ + I + ++P + R G LL
Sbjct: 116 LAAAME---RDIIKALIPLSPAAMIPEIARTGELL 147
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Query: 231 LLGHSFSNAIIMIMTSLRPEYNEKINLFVG---MAPFVFASHLRQGPLLEFLIKSVSNLV 287
LLGHS AI ++ + RP + F G ++P V A+ + L V NLV
Sbjct: 135 LLGHSXGGAIAILTAAERPGH------FAGXVLISPLVLANP-ESATTFKVLAAKVLNLV 187
Query: 288 PSINGYFPSGTSLYTMAHL-IDLYRQRRF-CQFDYGRDQNLLRYNSEEPPDYDLSRVTIP 345
P +S+ + +D+Y C+ + N+ + L ++T+P
Sbjct: 188 LPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVP 247
Query: 346 ILLYSGGADFFTDSR 360
LL G AD DS+
Sbjct: 248 FLLLQGSADRLCDSK 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,854,883
Number of Sequences: 62578
Number of extensions: 549662
Number of successful extensions: 1099
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 12
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)