RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10118
(409 letters)
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 151 bits (384), Expect = 6e-42
Identities = 105/354 (29%), Positives = 164/354 (46%), Gaps = 62/354 (17%)
Query: 106 AALIELWGYKSEEHKVTTEDGYIISLYRI------LPKQEGSPPVLVMHG-FLACSETFL 158
A LI GY EH + T+DGY+++L R+ L Q G PPVL+ HG F+A FL
Sbjct: 34 AQLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRG-PPVLLQHGLFMAGDAWFL 92
Query: 159 VRGKPDLAIMLSEAGYDVWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLPAFVD 218
+ L +L++ G+DVW+ N RG GH+ ++ +D+ FW +S+ E+ LYDL +
Sbjct: 93 NSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIH 152
Query: 219 FILHRTGFMKMTLLGHSFSNAIIMIMTSL-RPEYNEKINLFVGM----------APFVF- 266
++ + K+ ++GH S IM + +L +P E + + AP V
Sbjct: 153 YV-YSITNSKIFIVGH--SQGTIMSLAALTQPNVVEMVEAAALLCPISYLDHVTAPLVLR 209
Query: 267 --ASHLRQ-------------GPLLEFLIKSV-------SNLVPSING------------ 292
HL Q +L L+ S+ ++L+ SI G
Sbjct: 210 MVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDY 269
Query: 293 ---YFPSGTSLYTMAHLIDLYRQRRFCQFDYGRDQNLLRYNSEEPPDYDLSRV--TIPIL 347
Y P +S+ + HL + R+ F +DYG +NL Y PP +DLS + ++P+
Sbjct: 270 YLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLW 329
Query: 348 LYSGGADFFTDSRDVTRLEMSLPNLIGSHVLTTYNHFDFVISSDTKEVFYDDMM 401
+ GG D D DV LP+ L Y H DF++S+ KE Y+ M+
Sbjct: 330 MGYGGTDGLADVTDVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMI 383
Score = 35.2 bits (81), Expect = 0.062
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 12 PPVLLQHGLCLASDSWVLRGQE 33
PPVLLQHGL +A D+W L E
Sbjct: 75 PPVLLQHGLFMAGDAWFLNSPE 96
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part of
an alpha/beta hydrolase domain.
Length = 62
Score = 83.4 bits (207), Expect = 3e-20
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 105 TAALIELWGYKSEEHKVTTEDGYIISLYRILPKQE-----GSPPVLVMHGFLACSETFLV 159
T+ LI +GY EEH+VTTEDGYI++L+RI P + P VL+ HG LA S +++
Sbjct: 1 TSELIRKYGYPVEEHEVTTEDGYILTLHRIPPGRNNRGRGKKPVVLLQHGLLASSADWVL 60
Query: 160 RG 161
G
Sbjct: 61 NG 62
Score = 41.4 bits (98), Expect = 2e-05
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 1 MHRIVPKYANS-----PPVLLQHGLCLASDSWVLRG 31
+HRI P N P VLLQHGL +S WVL G
Sbjct: 27 LHRIPPGRNNRGRGKKPVVLLQHGLLASSADWVLNG 62
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 58.9 bits (141), Expect = 1e-09
Identities = 43/270 (15%), Positives = 81/270 (30%), Gaps = 36/270 (13%)
Query: 135 LPKQEGSPPVLVMHGFLACSETFLVRGKPDLAIMLSEAGYDVWLSNFRGNYNGKGHINMT 194
G PP++++HGF S + + A Y V + RG
Sbjct: 15 REAGGGGPPLVLLHGFPGSSSVWRPV---FKVLPALAARYRVIAPDLRG----------- 60
Query: 195 AEDENFWKFSFHEMGLYDLPAFVDFILHRTGFMKMTLLGHSFSNAIIMIMTSLRPEYNEK 254
+ L + +L G K+ L+GHS A+ + + P+
Sbjct: 61 -----HGRSDPAGYSLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRG 115
Query: 255 INLFVGMAPFVFASHLRQGPLLEFLIKSVSNLVPSINGYFP-----------------SG 297
+ L P + P + ++++L+ ++
Sbjct: 116 LVLIGPAPPPGLLEAALRQPAGAAPLAALADLLLGLDAAAFAALLAALGLLAALAAAARA 175
Query: 298 TSLYTMAHLIDLYRQRRFCQFDYGRDQNLLRYNSEEPPDYDLSRVTIPILLYSGGADFFT 357
+ + F + L + L+R+T+P L+ G D
Sbjct: 176 GLAEALRAPLLGAAAAAFARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVV 235
Query: 358 DSRDVTRLEMSLPNLIGSHVLTTYNHFDFV 387
+ RL +LPN V+ HF +
Sbjct: 236 PAELARRLAAALPNDARLVVIPGAGHFPHL 265
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 47.5 bits (113), Expect = 3e-06
Identities = 41/226 (18%), Positives = 67/226 (29%), Gaps = 26/226 (11%)
Query: 174 YDVWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLPAFVDFILHRTGFMKMTLLG 233
+DV + RG + F + DL ++ +L G K+ L+G
Sbjct: 1 FDVIAFDLRGFGRSSPPKD------------FADYRFDDLAEDLEALLDALGLDKVNLVG 48
Query: 234 HSFSNAIIMIMTSLRPEYNEKINLFVGMAPFVFASHLRQGPLLE---------FLIKSVS 284
HS I + + P+ + + L + P +S L L L SV
Sbjct: 49 HSMGGLIALAYAAKYPDRVKALVLVGTVHPAGLSSPLTPRGNLLGLLLDNFFNRLYDSVE 108
Query: 285 NLVP-SINGYFPSGTSLYTMAHLIDLYRQRRFCQFDYGRDQNL---LRYNSEEPPDYDLS 340
L+ +I + G + D L L Y+ L
Sbjct: 109 ALLGRAIKQFQALGRPFVSDFLKQFELSSLIRFGETLALDGLLGYALGYDLVWDRSAALK 168
Query: 341 RVTIPILLYSGGADFFTDSRDVTRLEMSLPNLIGSHVLTTYNHFDF 386
+ +P L+ G D +L PN V+ H
Sbjct: 169 DIDVPTLIIWGDDDPLVPPDASEKLAALFPNAQ-LVVIDDAGHLAQ 213
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 43.1 bits (102), Expect = 1e-04
Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 37/269 (13%)
Query: 107 ALIELWGYKSEEHKVTTEDGYIISLYRILPKQEGSPPVLVMHGFLACSETFLVRGKPDLA 166
L + ++E + DG + + V+++HG S + +LA
Sbjct: 1 PLNPVPRTRTEGYFTGA-DGTRLRYRTWAAPEPPKGVVVLVHGLGEHSGRY-----EELA 54
Query: 167 IMLSEAGYDVWLSNFRG---NYNGK-GHINMTAEDENFWKFSFHEMGLYDLPAFVDFILH 222
L+ G+DV+ + RG + G+ GH++ F+ + DL AFV+ I
Sbjct: 55 DDLAARGFDVYALDLRGHGRSPRGQRGHVDS---------FADYVD---DLDAFVETIAE 102
Query: 223 RTGFMKMTLLGHSFSNAIIMIMTSLRPEYNEKINLFVGMAPFV-FASHLRQGPLLEFLIK 281
+ + LLGHS I + L Y +I+ V +P + + + L +K
Sbjct: 103 PDPGLPVFLLGHSMGGLIAL--LYL-ARYPPRIDGLVLSSPALGLGGAILRLILARLALK 159
Query: 282 SVSNLVPSINGYFPSGTSLYTMAHLI-------DLYRQRRFCQFDYGRDQNLLRYN-SEE 333
+ + P + S + + Y + + +
Sbjct: 160 LLGRIRPKL--PVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGR 217
Query: 334 PPD-YDLSRVTIPILLYSGGADFFTDSRD 361
P D + +P+LL GG D D+ +
Sbjct: 218 VPALRDAPAIALPVLLLQGGDDRVVDNVE 246
>gnl|CDD|223506 COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase
fold [General function prediction only].
Length = 345
Score = 36.9 bits (86), Expect = 0.014
Identities = 54/270 (20%), Positives = 92/270 (34%), Gaps = 61/270 (22%)
Query: 121 VTTEDGYIISLY-RILPKQEGSPPVLVMHGFLACSETFLVRGKPDLAIMLSEAGYDVWLS 179
+ T DG I L P+ P V++ HG S + RG L LS G+ V +
Sbjct: 54 LETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNSPYARG---LMRALSRRGWLVVVF 110
Query: 180 NFRGNYNGKGHINMTAEDENFWKFSFHEMGLY-DLPAFVDFILHRTGFMKMTLLGHSFSN 238
+FRG G N + + G D+ F+D++ R + +G S
Sbjct: 111 HFRGC---SGEANTSP--------RLYHSGETEDIRFFLDWLKARFPPRPLYAVGFSLGG 159
Query: 239 AIIMIMTSLRPEYNEKINL---FVGMAPFVFA-----------SHLRQGPLLEFLIKSVS 284
++ + E + + L APF L LL L ++ +
Sbjct: 160 N---MLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRYLLRNLKRNAA 216
Query: 285 NLVPSINGYFPSGTSLYTMAHLIDLYRQRRFCQFDYGRDQNLLRYNSEEPPDYDLSRVTI 344
+ + P GT L + R R +FD +T
Sbjct: 217 RKLKELEPSLP-GT------VLAAIKRCRTIREFD--------------------DLLTA 249
Query: 345 PILLYSGGADFFTDSRDVTRL-EMSLPNLI 373
P+ ++ D++ + + L ++ P LI
Sbjct: 250 PLHGFADAEDYYRQASSLPLLPKIRKPTLI 279
>gnl|CDD|227099 COG4757, COG4757, Predicted alpha/beta hydrolase [General function
prediction only].
Length = 281
Score = 34.0 bits (78), Expect = 0.10
Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 14/204 (6%)
Query: 116 SEEHKVTTEDGYIISLYRILPKQEGSPPVLVMHGFLACSETFLVRGKPDLAIMLSEAGYD 175
+ E + DGY + R P + LV+ G + F R A ++AG++
Sbjct: 5 ATEAHLPAPDGYSLPGQR-FPADGKASGRLVVAGATGVGQYFYRR----FAAAAAKAGFE 59
Query: 176 VWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLPAFVDFILHRTGFMKMTLLGHS 235
V +Y G G + + W + + D PA + + + +GHS
Sbjct: 60 VLT----FDYRGIGQSRPASLSGSQW--RYLDWARLDFPAALAALKKALPGHPLYFVGHS 113
Query: 236 FSNAIIMIMTSLRPEYNEKINLFVGMAPFVFASHLRQGPLLEFLIKSVSNLVPSINGYFP 295
F + ++ P+Y G A + LR+ L V + GY P
Sbjct: 114 FGGQALGLLGQ-HPKYAAFAVFGSG-AGWSGWMGLRERLGAVLLWNLVGPPLTFWKGYMP 171
Query: 296 SGTSLYTMAHLIDLYRQ-RRFCQF 318
+ R R+C+
Sbjct: 172 KDLLGLGSDLPGTVMRDWARWCRH 195
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 31.2 bits (71), Expect = 0.69
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 221 LHRTGFMKMTLLGHSFSNAIIMIMTSLRPEYNEKI 255
L K T +GHS +M +T+L P+ +K+
Sbjct: 75 LDALQIEKATFIGHSMGGKAVMALTALAPDRIDKL 109
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 30.1 bits (68), Expect = 1.6
Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 65/228 (28%)
Query: 144 VLVMHGFLACSETFLVRGKPDLAIMLSEAGYDVWLSNFRGNYNGKGHINMTAEDENFWKF 203
V+++HG +E++ LA L+ AGY V + G+ G ++ +
Sbjct: 1 VVLLHGAGGSAESWR-----PLAEALA-AGYRVLAPDLPGH--GD------SDGPPRTPY 46
Query: 204 SFHEMGLYDLPAFVDFILHRTGFMKMTLLGHSFSNAIIMIMTSLRPEYNEKINLFVGMAP 263
S + DL A +D + + L+GHS A+ + + RP E++ V ++P
Sbjct: 47 SLEDDAA-DLAALLDALGLG----PVVLVGHSLGGAVALAAAARRP---ERVAGLVLISP 98
Query: 264 FVFASHLRQGPLLEFLIKSVSNLVPSINGYFPSGTSLYTMAHLIDLYRQRRFCQFDYGRD 323
+ + + L+ A L+ L R
Sbjct: 99 PL---------------RDLEELLA------------ADAAALLALLRAAL--------- 122
Query: 324 QNLLRYNSEEPPDYDLSRVTIPILLYSGGADFFTDSRDVTRLEMSLPN 371
+ L+R+T+P+L+ G D RL +LP
Sbjct: 123 -------LDADLREALARLTVPVLVIHGEDDPLVPPEAARRLAEALPG 163
>gnl|CDD|215484 PLN02894, PLN02894, hydrolase, alpha/beta fold family protein.
Length = 402
Score = 29.9 bits (67), Expect = 2.3
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 26/149 (17%)
Query: 135 LPKQEGSPPVLVMHGFLACSETFLVRGKPDLA-----IMLSEAGYDVWLSNFRGNYNGKG 189
+E +P ++++HG+ A S+ F R LA I + + G W + R ++ K
Sbjct: 99 FDSKEDAPTLVMVHGYGA-SQGFFFRNFDALASRFRVIAIDQLG---WGGSSRPDFTCKS 154
Query: 190 HINMTAEDENFWKFSFHEMGLYDLPAFVDFILHRTGFMKMTLLGHSFSNAIIMIMTSLRP 249
T E E ++ SF E LLGHSF + P
Sbjct: 155 ----TEETEAWFIDSFEEW------------RKAKNLSNFILLGHSFGGYVAAKYALKHP 198
Query: 250 EYNEKINLFVGMAPFVFASHLRQGPLLEF 278
E+ + + L VG A F S + L +F
Sbjct: 199 EHVQHLIL-VGPAGFSSESDDKSEWLTKF 226
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 28.5 bits (64), Expect = 3.4
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 143 PVLVMHGFLACSETFLVRGKPDLAIMLSEAGYDVWLSNFRGN 184
V+++HG E + LA L+ GY+V ++ G+
Sbjct: 1 LVVLLHGAGGDPEAYA-----PLARALASRGYNVVAVDYPGH 37
Score = 27.7 bits (62), Expect = 5.8
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 334 PPDYDLSRVTIPILLYSGGADFFTDSRDVTRLEMSLPNLIGSHVLTTYNHF 384
DL+++T+P+L+ G D + L +LP V+ H
Sbjct: 95 DALDDLAKLTVPVLIIHGTRDGVVPPEEAEALAAALPGPAELVVIEGAGHS 145
>gnl|CDD|189019 cd00008, PIN_53EXO-like, PIN domains of the 5'-3' exonucleases of
DNA polymerase I, bacteriophage T4 RNase H and T5-5'
nucleases, and homologs. PIN (PilT N terminus) domains
of the 5'-3' exonucleases (53EXO) of mutli-domain DNA
polymerase I and single domain protein homologs, as well
as, the PIN domains of bacteriophage T5-5'nuclease
(T5FEN or 5'-3'exonuclease), bacteriophage T4 RNase H
(T4FEN), bacteriophage T3 (T3 phage
exodeoxyribonuclease) and other similar nucleases are
included in this family. The 53EXO of DNA polymerase I
recognizes and endonucleolytically cleaves a
structure-specific DNA substrate that has a bifurcated
downstream duplex and an upstream template-primer duplex
that overlaps the downstream duplex by 1 bp. The
T5-5'nuclease is a 5'-3'exodeoxyribonuclease that also
exhibits endonucleolytic activity on flap structures
(branched duplex DNA containing a free single-stranded
5'end). T4 RNase H, which removes the RNA primers that
initiate lagging strand fragments, has 5'- 3'exonuclease
activity on DNA/DNA and RNA/DNA duplexes and has
endonuclease activity on flap or forked DNA structures.
These nucleases are members of the structure-specific,
5' nuclease family that catalyzes hydrolysis of DNA
duplex-containing nucleic acid structures during DNA
replication, repair, and recombination. They contain a
PIN domain with a helical arch/clamp region (I domain)
of variable length (approximately 16 to 30 residues in
53EXO-like PIN domains) and a H3TH (helix-3-turn-helix)
domain, an atypical helix-hairpin-helix-2-like region.
Both the H3TH domain (not included here) and the helical
arch/clamp region are involved in DNA binding. The
active site of the 53EXO of Taq DNA polymerase I
includes a set of conserved acidic residues that are
essential for binding three divalent metal ions (two
Mn2+ ions and one Zn2+ ion) required for nuclease
activity. T5-5'nuclease requires at least two bound
divalent metal ions for nuclease activity and is
reported to be able to use Mg2+, Mn2+ or Co2+ as
co-factors.
Length = 160
Score = 28.8 bits (64), Expect = 3.5
Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 136 PKQEGSPPVLVMHGFLACSETFLVRGKPDLAIMLSEAGYDVWLSNFRGNYN---GKGHIN 192
K+E +++ ++ I+L + G V+ Y + +
Sbjct: 19 KKKEKINLSPFASSYVSSIQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAE 78
Query: 193 MTAEDENFWKFSFHEMGLYDLPAFVDFILHRTGFMKMTLLGHSFSNAIIMIMTSLRPEYN 252
A DE F+++ L T F T+ G+ + ++ + E +
Sbjct: 79 EKALDEQFFEYLKDAFELCKA----------TTFPTFTIRGYEADDMAAYLVKKIGHEGD 128
Query: 253 E 253
Sbjct: 129 H 129
>gnl|CDD|239115 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases
similar to the inosine-adenosine-guanosine-preferring
nucleoside hydrolase from Caenorhabditis elegans.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the respective base.
These enzymes vary in their substrate specificity. This
group contains eukaryotic, bacterial and archeal
proteins similar to the purine-preferring nucleoside
hydrolase (IAG-NH) from C. elegans and the salivary
purine nucleosidase from Aedes aegypti. C. elegans
IAG-NH exhibits a high affinity for the substrate
analogue p-nitrophenylriboside (p-NPR). .
Length = 306
Score = 28.8 bits (65), Expect = 4.6
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 183 GNYNGKGHINMTAEDENFW 201
GN G G+ AE NF
Sbjct: 152 GNREGVGNTTPAAE-FNFH 169
>gnl|CDD|222798 PHA00454, PHA00454, ATP-dependent DNA ligase.
Length = 315
Score = 28.5 bits (64), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 283 VSNLVPSINGYFPSGT-------SLYTMAHLIDLYRQRR 314
V +VP + YFP +Y M L +LY ++R
Sbjct: 153 VRAMVPLLMEYFPEIDWFLSESYEVYDMESLQELYEKKR 191
>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase. Members of this
subfamily are probable C-S lyases from a family of
pyridoxal phosphate-dependent enzymes that tend to be
(mis)annotated as probable aminotransferases. One member
is PatB of Bacillus subtilis, a proven C-S-lyase.
Another is the virulence factor cystalysin from
Treponema denticola, whose hemolysin activity may stem
from H2S production. Members of the seed alignment occur
next to examples of the enzyme 5-histidylcysteine
sulfoxide synthase, from ovothiol A biosynthesis, and
would be expected to perform a C-S cleavage of
5-histidylcysteine sulfoxide to leave
1-methyl-4-mercaptohistidine (ovothiol A).
Length = 384
Score = 28.4 bits (64), Expect = 7.7
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 155 ETFLVRGKPDLAIMLSEAGYDVWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLP 214
E F+ + P + + EA Y WL + R + +D + F + GL L
Sbjct: 300 EEFIAKRLPQIRVRPPEATYLAWL-DCRA---------LGLDDADLRAFFIEQAGL-GLN 348
Query: 215 AFVDFILHRTGFMKMTL 231
+ F +GFM++
Sbjct: 349 PGISFGDGGSGFMRLNF 365
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 28.3 bits (63), Expect = 8.5
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 21/141 (14%)
Query: 105 TAALIELWGYKSEEHKVTTEDGYIISLYRILPKQEG---SPPVLVM-HG--FLACSETFL 158
+ L ++ + E + DG I + P P++V HG +F
Sbjct: 354 NSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFN 413
Query: 159 VRGKPDLAIMLSEAGYDVWLSNFRGNYNGKGHINMTAEDENFWKFSFHEMGLYDLPAFVD 218
+L+ AGY V N+RG+ G G A ++ + L DL A VD
Sbjct: 414 -----PEIQVLASAGYAVLAPNYRGS-TGYGREFADAIRGDWG-----GVDLEDLIAAVD 462
Query: 219 FILHRTGFM---KMTLLGHSF 236
L + + ++ + G S+
Sbjct: 463 A-LVKLPLVDPERIGITGGSY 482
>gnl|CDD|227763 COG5476, COG5476, Uncharacterized conserved protein [Function
unknown].
Length = 488
Score = 28.1 bits (63), Expect = 8.8
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 130 SLYRILPKQEGSPPVL---VMHGFLA 152
SLY L QE +L V HGF A
Sbjct: 208 SLYDRLKAQEARDGILSVSVAHGFPA 233
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.424
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,294,489
Number of extensions: 2084389
Number of successful extensions: 1608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1598
Number of HSP's successfully gapped: 33
Length of query: 409
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 310
Effective length of database: 6,546,556
Effective search space: 2029432360
Effective search space used: 2029432360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)