RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10120
(510 letters)
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 285 bits (731), Expect = 2e-93
Identities = 88/353 (24%), Positives = 146/353 (41%), Gaps = 78/353 (22%)
Query: 117 VVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDV 176
++ P + I + E +PDD+ + ++P+ G+TW QE+V ++ + D E +
Sbjct: 19 TLLQPATVDNWSQIQSFEAKPDDLLICTYPKAGTTWIQEIVDMIEQNGDVEKCQRAII-- 76
Query: 177 WLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVD 236
Q + P+ V+
Sbjct: 77 -------------QHRHPFIEWARP----------------------------PQPSGVE 95
Query: 237 YVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMNVV 296
+ + SPR +KTHL LLP K +
Sbjct: 96 KAKAMPSPRILKTHLSTQLLPPSFWENNCKFL---------------------------- 127
Query: 297 YVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRT 356
YVARN KD VSYYH+ ++ H L DP ++++ E F+ G G H+ +W +
Sbjct: 128 YVARNAKDCMVSYYHFQRMNHMLPDPGT--WEEYFETFINGKVVWGSWFDHVKGWWEMKD 185
Query: 357 EDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPIL 416
ILFL YED+K+D K I + QF+GK++ + + ++ SF KM++NP TN +
Sbjct: 186 RHQILFLFYEDIKRDPKHEIRKVMQFMGKKVDETVLDKIVQETSFEKMKENPMTNRSTV- 244
Query: 417 QKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSFD 469
+ S +F+RKG VGD+KN + +FD+ + G+ ++F
Sbjct: 245 ----SKSILDQSISSFMRKGTVGDWKNHFTVAQNERFDEIYRRKMEGTSINFS 293
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 283 bits (727), Expect = 6e-93
Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 78/353 (22%)
Query: 117 VVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDV 176
+ + E + + E RPDD+ + ++P++G+TW E++ L+ ++ D E K
Sbjct: 18 IPLFWSIAEHWSQVESFEARPDDILISTYPKSGTTWVSEILDLIYNNGDAEKCK------ 71
Query: 177 WLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVD 236
+ + PG I N V+
Sbjct: 72 --------------------------------RDAIYKRVPFMELIIPG-----ITNGVE 94
Query: 237 YVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMNVV 296
+ + SPR +KTHLP LLP K+I
Sbjct: 95 MLNNMPSPRIVKTHLPVQLLPSSFWKNDCKII---------------------------- 126
Query: 297 YVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRT 356
YVARN KDV VSYY++ ++ +P +++F E F+ G GP H+ +W KR
Sbjct: 127 YVARNAKDVVVSYYYFYQMAKIHPEPGT--WEEFLEKFMAGQVSFGPWYDHVKSWWEKRK 184
Query: 357 EDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPIL 416
E IL+L YEDMK++ K I + +FL K I ++ + ++ H SF+ M++NP+ N ++
Sbjct: 185 EYRILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKILYHSSFSVMKENPSANYTTMM 244
Query: 417 QKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSFD 469
++ E +S F+RKG+ GD+KNQ + KF++ + + S L F
Sbjct: 245 KE-----EMDHSVSPFMRKGISGDWKNQFTVAQYEKFEEDYVKKMEDSTLKFR 292
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 282 bits (724), Expect = 2e-92
Identities = 78/355 (21%), Positives = 131/355 (36%), Gaps = 87/355 (24%)
Query: 114 PGRVVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRP 173
P +++ + +R +DV ++++P++G+ W E++ L+ D + + P
Sbjct: 22 PTMGFRSETLRKVRD---EFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVP 78
Query: 174 DDVWLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPN 233
P W+ E
Sbjct: 79 ---IWERSP-----------WV----------------------------------ESEI 90
Query: 234 SVDYVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDM 293
+ SPR +HLP L PK + K KVI
Sbjct: 91 GYTALSETESPRLFSSHLPIQLFPKSFFSSKAKVI------------------------- 125
Query: 294 NVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWN 353
Y+ RNP+DV VS Y + K + L+ P+ ++++ E F QG G H+ +
Sbjct: 126 ---YLMRNPRDVLVSGYFFWKNMKFLKKPKS--WEEYFEWFCQGTVLYGSWFDHIHGWMP 180
Query: 354 KRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLE 413
R E N L L YE++K+D I + QFLGK + + + ++ + SF M++N +N
Sbjct: 181 MREEKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYS 240
Query: 414 PILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSF 468
+ + + LRKGV GD+KN + FD E +A
Sbjct: 241 LL------SVDYVVDKTQLLRKGVSGDWKNHFTVAQAEDFDKLFQEKMADLPREL 289
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 284 bits (727), Expect = 3e-92
Identities = 100/396 (25%), Positives = 181/396 (45%), Gaps = 51/396 (12%)
Query: 78 METKE--PQYVTYEKLESECGDKLDSMF-GLKDCLLRVHPGRVVIPPKFKEMGEVIYNME 134
ME ++ P + +L E + + +++ P ++ + + IYNM
Sbjct: 1 MEKQQDLPFPYEFRELNPEEDKLVKANLGAFPTTYVKLGPKGYMVYRPYLKDAANIYNMP 60
Query: 135 VRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDVWLVSFPRTGSTWAQEMVW 194
+RP DV++ S+ R+G+T QE+VWL+ +DL++E AK + + +
Sbjct: 61 LRPTDVFVASYQRSGTTMTQELVWLIENDLNFEAAKTY----MSLRYI--------YLDG 108
Query: 195 LLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVDYVQTLASPRFIKTHLPYS 254
+ +D + + L ++ + +S+ RF+KTHLP S
Sbjct: 109 FMIYDPEKQEEYNDILPNPENLDMERYLGLLEYSSRPGSSLLAAVPPTEKRFVKTHLPLS 168
Query: 255 LLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMNVVYVARNPKDVCVSYYHYCK 314
L+P + K++ Y+AR+P+DV VS +H+ +
Sbjct: 169 LMPPNMLD-TVKMV----------------------------YLARDPRDVAVSSFHHAR 199
Query: 315 LIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRTEDNILFLKYEDMKKDQKG 374
L++ L F DF E+F +G + P H+ E W KR + N+LFL YED KD G
Sbjct: 200 LLYLLNKQSN--FKDFWEMFHRGLYTLTPYFEHVKEAWAKRHDPNMLFLFYEDYLKDLPG 257
Query: 375 AILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPILQKMDKPAEKRNSEDTFLR 434
I + A FLGK++S++ I L +HL+F K ++N A N+E + + F+R
Sbjct: 258 CIARIADFLGKKLSEEQIQRLCEHLNFEKFKNNGAVNMEDY-----REIGILADGEHFIR 312
Query: 435 KGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSFDD 470
KG G +++ E+ ++ + ++ + L + L + +
Sbjct: 313 KGKAGCWRDYFDEEMTKQAEKWIKDNLKDTDLRYPN 348
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 280 bits (718), Expect = 2e-91
Identities = 90/353 (25%), Positives = 154/353 (43%), Gaps = 78/353 (22%)
Query: 117 VVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDV 176
++ P ++ + I+N + +PDD+ + ++P+ G+TW QE+V L+ ++ D E +K P
Sbjct: 21 ILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAP--- 77
Query: 177 WLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVD 236
+ L + + + ++
Sbjct: 78 ------------THQRFPFLEMKIP----------------------------SLGSGLE 97
Query: 237 YVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMNVV 296
+ SPR +KTHLP+ LLP + K+I
Sbjct: 98 QAHAMPSPRILKTHLPFHLLPPSLLEKNCKII---------------------------- 129
Query: 297 YVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRT 356
YVARNPKD VSYYH+ ++ L P ++++ E FL G G H+ +W +
Sbjct: 130 YVARNPKDNMVSYYHFQRMNKALPAPG--TWEEYFETFLAGKVCWGSWHEHVKGWWEAKD 187
Query: 357 EDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPIL 416
+ IL+L YEDMKK+ K I + A+F+GK++ D + ++ + SF+ M+ NP N I
Sbjct: 188 KHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSI- 246
Query: 417 QKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSFD 469
+S F+RKG VGD+K + +FD+ + + + L+F
Sbjct: 247 ----PAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKMTDTRLTFH 295
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 274 bits (703), Expect = 2e-89
Identities = 87/353 (24%), Positives = 151/353 (42%), Gaps = 78/353 (22%)
Query: 117 VVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDV 176
V++ +F + E + RPDD+ + ++P++G+TW E+V+++ + D E K
Sbjct: 20 VLMDKRFTKYWEDVEMFLARPDDLVIATYPKSGTTWISEVVYMIYKEGDVEKCKEDA--- 76
Query: 177 WLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVD 236
+ L ++ N +
Sbjct: 77 ------------IFNRIPYLECRNE----------------------------DLINGIK 96
Query: 237 YVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMNVV 296
++ SPR +KTHLP LLP K+I
Sbjct: 97 QLKEKESPRIVKTHLPPKLLPASFWEKNCKMI---------------------------- 128
Query: 297 YVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRT 356
Y+ RN KDV VSYY++ +I +P+ F +F E F+QG P G H+ +W K
Sbjct: 129 YLCRNAKDVAVSYYYFLLMITSYPNPKS--FSEFVEKFMQGQVPYGSWYDHVKAWWEKSK 186
Query: 357 EDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPIL 416
+LF+ YEDMK+D + +++ +FL ++ S + + +I H SF +M++NP+TN +
Sbjct: 187 NSRVLFMFYEDMKEDIRREVVKLIEFLERKPSAELVDRIIQHTSFQEMKNNPSTNYTMMP 246
Query: 417 QKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSFD 469
++M F+RKG++GD+KN L +FD+ + + + F
Sbjct: 247 EEM-----MNQKVSPFMRKGIIGDWKNHFPEALRERFDEHYKQQMKDCTVKFR 294
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 275 bits (704), Expect = 2e-89
Identities = 95/353 (26%), Positives = 153/353 (43%), Gaps = 77/353 (21%)
Query: 117 VVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDV 176
V KE E + N + +PDD+ L ++P++G+TW E++ ++ +D D E K
Sbjct: 27 VPTLILSKEWWEKVANFQAKPDDLILATYPKSGTTWMHEILDMILNDGDVEKCKRAQ--- 83
Query: 177 WLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVD 236
+ L ++ ++
Sbjct: 84 ------------TLDRHAFLELKFP---------------------------HKEKPDLE 104
Query: 237 YVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMNVV 296
+V ++SP+ IKTHLP L+P I K++
Sbjct: 105 FVLEMSSPQLIKTHLPSHLIPPSIWKENCKIV---------------------------- 136
Query: 297 YVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRT 356
YVARNPKD VSYYH+ ++ + DP+ ++F E F+ G G H+ +W +
Sbjct: 137 YVARNPKDCLVSYYHFHRMASFMPDPQN--LEEFYEKFMSGKVVGGSWFDHVKGWWAAKD 194
Query: 357 EDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPIL 416
IL+L YED+KKD K I + +FL K IS++ + +I H SF+ M+ NP TN +
Sbjct: 195 MHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKIIYHTSFDVMKQNPMTNYTTL- 253
Query: 417 QKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSFD 469
+ +S F+RKG+ GD+KN + +FD + +AGS L+F
Sbjct: 254 ----PTSIMDHSISPFMRKGMPGDWKNYFTVAQNEEFDKDYQKKMAGSTLTFR 302
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 273 bits (701), Expect = 6e-89
Identities = 90/353 (25%), Positives = 149/353 (42%), Gaps = 78/353 (22%)
Query: 117 VVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDV 176
V + F E + + + RPDD+ + ++P++G+TW +++ ++ D E P
Sbjct: 18 VPLIKYFAEALGPLQSFQARPDDLLISTYPKSGTTWVSQILDMIYQGGDLEKCHRAPI-- 75
Query: 177 WLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVD 236
V L IP+ ++
Sbjct: 76 -------------FMRVPFLEFKAP----------------------------GIPSGME 94
Query: 237 YVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMNVV 296
++ +PR +KTHLP +LLP+ + K KV+
Sbjct: 95 TLKDTPAPRLLKTHLPLALLPQTLLDQKVKVV---------------------------- 126
Query: 297 YVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRT 356
YVARN KDV VSYYH+ + +P +D F E F+ G G H+ E+W
Sbjct: 127 YVARNAKDVAVSYYHFYHMAKVHPEPGT--WDSFLEKFMVGEVSYGSWYQHVQEWWELSR 184
Query: 357 EDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPIL 416
+L+L YEDMK++ K I + +F+G + ++ + ++ H SF +M+ NP TN +
Sbjct: 185 THPVLYLFYEDMKENPKREIQKILEFVGHSLPEETVDFMVQHTSFKEMKKNPMTNYTTVP 244
Query: 417 QKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSFD 469
Q+ +S F+RKG+ GD+K + +FD +E +AG LSF
Sbjct: 245 QEF-----MDHSISPFMRKGMAGDWKTTFTVAQNERFDADYAEKMAGCSLSFR 292
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 271 bits (695), Expect = 4e-88
Identities = 101/372 (27%), Positives = 156/372 (41%), Gaps = 81/372 (21%)
Query: 101 SMFGLKDCL---LRVHPGRVVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMV 157
SM KD L L++ G + F E I RPDD+ + ++P++G+TW E++
Sbjct: 2 SMLSPKDILRKDLKLVHG-YPMTCAFASNWEKIEQFHSRPDDIVIATYPKSGTTWVSEII 60
Query: 158 WLLGHDLDYEGAKVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLT 217
++ +D D E K E V +L L +
Sbjct: 61 DMILNDGDIEKCKRGF---------------ITEKVPMLEMTLPGLR------------- 92
Query: 218 ALVANDPGDWKNEIPNSVDYVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNI 277
+ ++ ++ SPR +KTHLP LLPK K+I
Sbjct: 93 --------------TSGIEQLEKNPSPRIVKTHLPTDLLPKSFWENNCKMI--------- 129
Query: 278 VGRPPLDYIKQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQG 337
Y+ARN KDV VSYYH+ + + P ++++ E FL G
Sbjct: 130 -------------------YLARNAKDVSVSYYHFDLMNNLQPFPGT--WEEYLEKFLTG 168
Query: 338 NAPMGPICPHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALID 397
G H+ +W K+ E ILFL YEDMK++ K I + +FL K ++D+ + +I
Sbjct: 169 KVAYGSWFTHVKNWWKKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIH 228
Query: 398 HLSFNKMRDNPATNLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFV 457
H SF M+DNP N + + +S+ F+RKG GD+KN + KFD
Sbjct: 229 HTSFEVMKDNPLVNYTHLPTTV-----MDHSKSPFMRKGTAGDWKNYFTVAQNEKFDAIY 283
Query: 458 SEGLAGSGLSFD 469
++ + L F
Sbjct: 284 ETEMSKTALQFR 295
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 268 bits (686), Expect = 2e-86
Identities = 80/396 (20%), Positives = 147/396 (37%), Gaps = 81/396 (20%)
Query: 79 ETKEPQYVTYEKLESECGDKLDSMFGLKDCL---LRVHPGRVVIPPKFKEMGEVIYNMEV 135
+ P Y+ E L E + S+ K L + G + + E
Sbjct: 4 SSSVPAYLGDEDLTQETRALISSLPKEKGWLVSEIYEFQGLWHTQAILQGILICQKRFEA 63
Query: 136 RPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDVWLVSFPRTGSTWAQEMVWL 195
+ D+ LV+ P++G+TW + +V+ L + + + + LV+ P +
Sbjct: 64 KDSDIILVTNPKSGTTWLKALVFALLNRHKFPVSS-SGNHPLLVTNPHLLVPF------- 115
Query: 196 LGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVDYVQTLASPRFIKTHLPYSL 255
L + P + +P SPR + TH+ +
Sbjct: 116 --------------------LEGVYYESPDFDFSSLP----------SPRLMNTHISHLS 145
Query: 256 LPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMNVVYVARNPKDVCVSYYHYCKL 315
LP+ + + K++ Y RNPKD+ VS +H+ K
Sbjct: 146 LPESVKSSSCKIV----------------------------YCCRNPKDMFVSLWHFGKK 177
Query: 316 IHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRTED--NILFLKYEDMKKDQK 373
+ + + + E F +G GP H+LE+W E+ +LF+ YE++KK +
Sbjct: 178 LAPEETADYP-IEKAVEAFCEGKFIGGPFWDHILEYWYASRENPNKVLFVTYEELKKQTE 236
Query: 374 GAILQTAQFLGKQISDDN-IAALIDHLSFNKMRDNPATNLEPILQKMDKPAEKRNSEDTF 432
+ + A+FL ++ + ++ SF + + + P TF
Sbjct: 237 VEMKRIAEFLECGFIEEEEVREIVKLCSFESLSNLEVNKEGKL------PNGIETK--TF 288
Query: 433 LRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSF 468
RKG +G +++ +S L + D + E GSGL F
Sbjct: 289 FRKGEIGGWRDTLSESLAEEIDRTIEEKFKGSGLKF 324
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform
B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A
{Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 263 bits (674), Expect = 6e-85
Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 53/300 (17%)
Query: 170 KVRPDDVWLVSFPRTGSTWAQEMVWLLGHDL---AATQIVYVARNPKDVLTALVANDPGD 226
VR DD++++++P++G+TW E++ L+ + + R P
Sbjct: 44 DVRDDDIFIITYPKSGTTWMIEIICLILKEGDPSWIRSVPIWERAPWC------------ 91
Query: 227 WKNEIPNSVDYVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYI 286
E + SPR + +HLP + K + K KVI
Sbjct: 92 ---ETIVGAFSLPDQYSPRLMSSHLPIQIFTKAFFSSKAKVI------------------ 130
Query: 287 KQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICP 346
Y+ RNP+DV VS YHY K+ L+DP D F FL+G G
Sbjct: 131 ----------YMGRNPRDVVVSLYHYSKIAGQLKDPGT--PDQFLRDFLKGEVQFGSWFD 178
Query: 347 HMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRD 406
H+ + + +DN LF+ YE++++D +G++ + FLG+ + + + +++ H +F+ M+
Sbjct: 179 HIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSVVAHSTFSAMKA 238
Query: 407 NPATNLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGL 466
N +N + P+ + FLRKGV GD+KN + FD + + G
Sbjct: 239 NTMSNYTLL-----PPSLLDHRRGAFLRKGVCGDWKNHFTVAQSEAFDRAYRKQMRGMPT 293
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 260 bits (667), Expect = 5e-84
Identities = 94/378 (24%), Positives = 146/378 (38%), Gaps = 99/378 (26%)
Query: 93 SECGDKLDSMFGLKDCLLRVHPGRVVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTW 152
+E + S G + G V +PP + E I N VRP DVW+V++P++G++
Sbjct: 2 AESEAETPSTPGEFESKYFEFHG-VRLPPFCRGKMEEIANFPVRPSDVWIVTYPKSGTSL 60
Query: 153 AQEMVWLLGHDLDYEGAKVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNP 212
QE+V+L+ D + + +++ L
Sbjct: 61 LQEVVYLVSQGADPDEIGLMN--------------IDEQLPVL----------------- 89
Query: 213 KDVLTALVANDPGDWKNEIPN-SVDYVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGM 271
E P +D ++ L SPR IK+HLPY LP + KVI
Sbjct: 90 -----------------EYPQPGLDIIKELTSPRLIKSHLPYRFLPSDLHNGDSKVI--- 129
Query: 272 IEGTNIVGRPPLDYIKQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFC 331
Y+ARNPKD+ VSYY + + + + F +FC
Sbjct: 130 -------------------------YMARNPKDLVVSYYQFHRSLRTMSYRGT--FQEFC 162
Query: 332 ELFLQGNAPMGPICPHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDN 391
F+ G H+ EFW R + N+LFLKYEDM +D + Q A+FLG
Sbjct: 163 RRFMNDKLGYGSWFEHVQEFWEHRMDSNVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQ 222
Query: 392 IAALIDHLSFNKMRDNPATNLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIR 451
+ AL +H + N+E + +G VG +K+ + +
Sbjct: 223 LEALTEHCHQLVDQ-------------------CCNAEALPVGRGRVGLWKDIFTVSMNE 263
Query: 452 KFDDFVSEGLAGSGLSFD 469
KFD + + L+FD
Sbjct: 264 KFDLVYKQKMGKCDLTFD 281
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 261 bits (668), Expect = 2e-83
Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 53/300 (17%)
Query: 170 KVRPDDVWLVSFPRTGSTWAQEMVWLLGHDL---AATQIVYVARNPKDVLTALVANDPGD 226
VR DD++++++P++G+TW E++ L+ + + R P
Sbjct: 42 DVRDDDIFIITYPKSGTTWMIEIICLILKEGDPSWIRSVPIWERAPWC------------ 89
Query: 227 WKNEIPNSVDYVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYI 286
E + SPR + +HLP + K + K KVI
Sbjct: 90 ---ETIVGAFSLPDQYSPRLMSSHLPIQIFTKAFFSSKAKVI------------------ 128
Query: 287 KQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICP 346
Y+ RNP+DV VS YHY K+ L+DP D F FL+G G
Sbjct: 129 ----------YMGRNPRDVVVSLYHYSKIAGQLKDPGT--PDQFLRDFLKGEVQFGSWFD 176
Query: 347 HMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRD 406
H+ + + +DN LF+ YE++++D +G++ + FLG+ + + + +++ H +F+ M+
Sbjct: 177 HIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSVVAHSTFSAMKA 236
Query: 407 NPATNLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGL 466
N +N + P+ + FLRKGV GD+KN + FD + + G
Sbjct: 237 NTMSNYTLL-----PPSLLDHRRGAFLRKGVCGDWKNHFTVAQSEAFDRAYRKQMRGMPT 291
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 242 bits (620), Expect = 1e-76
Identities = 55/359 (15%), Positives = 105/359 (29%), Gaps = 90/359 (25%)
Query: 140 VWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDVWLVSFPRTGSTWAQEMVWLLGHD 199
+ T Q+M G W+ S+P+ G+TW + M+
Sbjct: 14 LVPRGSHMASMTGGQQM-----------GRGSMNGIRWIASYPKAGNTWVRCMLAAYITG 62
Query: 200 LAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVDY----VQTLASPRFIKTHLPYSL 255
+ P+ V ND + + + P +KTHL +
Sbjct: 63 ----------KAPQ------VWNDIDAESLTLEAMLRFGDLPPAEPMEPVLVKTHLKADV 106
Query: 256 LPKQIAT-VKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMNVVYVARNPKDVCVSYYHYCK 314
+ KV+ Y+ RNP+D+ +S
Sbjct: 107 PVLGLYGEATAKVL----------------------------YLVRNPRDMLLSSMRMAS 138
Query: 315 LIHHLQDPEGKYFDDFC--------ELFLQGNAPMGPICPHMLEFWNKRTE----DNILF 362
+ + + F L G +G ++ + ++ ++L
Sbjct: 139 ISRDDVEKSRDFARKFIANEGLGWNALGAGGGVGLGSWPENVRSWTESSSDRFPNADVLT 198
Query: 363 LKYEDMKKDQKGAILQTAQFLG--KQISDDNIAALIDHLSFNKMRDNPATNLEPILQKMD 420
++YED+K D + +FL + ++I + + +MR+ + +
Sbjct: 199 MRYEDLKGDPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLERMRELEKRSEQQG----- 253
Query: 421 KPAEKRNSEDTFLRKGVVGDYKNQMSPE---------LIRKFDDFVSEGLAG-SGLSFD 469
D + KG G + Q E L + E L G SG +
Sbjct: 254 -GGSPIRHGDARMMKGGPGGARPQFVGEGRYDQSLSFLGEDIESDYQELLHGDSGFALY 311
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 214 bits (547), Expect = 3e-66
Identities = 44/301 (14%), Positives = 91/301 (30%), Gaps = 61/301 (20%)
Query: 170 KVRPDD--VWLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDW 227
R W+ S+P+ G W + M+ YV P + + A P
Sbjct: 15 VPRGSHMMCWIASYPKAGGHWLRCMLTS-----------YVTGEPVETWPGIQAGVP-HL 62
Query: 228 KNEIPNSVDYVQTLASPRFIKTHLPYSLLPKQIAT-VKPKVIEGMIEGTNIVGRPPLDYI 286
+ + + + TH + KV+
Sbjct: 63 EGLLRDGEAPSADPDEQVLLATHFTADRPVLRFYRESTAKVV------------------ 104
Query: 287 KQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNA------- 339
+ RNP+D +S + + + E F+
Sbjct: 105 ----------CLIRNPRDAMLSLMRMKGIPP----EDVEACRKIAETFIADEGFSSVRIW 150
Query: 340 -PMGPICPHMLEFWNKRTE----DNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAA 394
G ++ + + E +L ++YED++KD +G + + FL D +A
Sbjct: 151 AGEGSWPENIRSWTDSVHESFPNAAVLAVRYEDLRKDPEGELWKVVDFLELGGRDG-VAD 209
Query: 395 LIDHLSFNKMRDNPATNLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFD 454
+ + + +MR+ + L+ + + F+ KG M ++ + +
Sbjct: 210 AVANCTLERMREMEERSKLLGLETTGLM-TRGGKQLPFVGKGGQRKSLKFMGDDIEKAYA 268
Query: 455 D 455
D
Sbjct: 269 D 269
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 8e-11
Identities = 80/507 (15%), Positives = 149/507 (29%), Gaps = 178/507 (35%)
Query: 5 DILPPVQTE---SQKTATKEESVTKEPQYVTYEKLESECGDK---LDSMFG-LKDCLLR- 56
ILP + T E V K YV+ S+ G L+ ++C L
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
Query: 57 --VH------PGRVVIPPKFKEMGEVI--Y---NMETKEPQYVTYEKLES------ECGD 97
+H + E+I Y + K P +K S G+
Sbjct: 99 NDIHALAAKLLQEN--DTTLVKTKELIKNYITARIMAKRP---FDKKSNSALFRAVGEGN 153
Query: 98 -KLDSMFGLKDCLLRVHPGRVVIPPKFKEMGEV--IYNMEVRP-----DDVWLVSFPRTG 149
+L ++FG G+ F+E+ ++ Y++ V + L RT
Sbjct: 154 AQLVAIFG----------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-LSELIRTT 202
Query: 150 STWAQEMVWLLGHDLDY----EGAKVRPDDVWL----VSFPRTGSTWAQEMVWLLGHDLA 201
+ + L+ E PD +L +S P L+G
Sbjct: 203 LDAEK----VFTQGLNILEWLENPSNTPDKDYLLSIPISCP------------LIG---- 242
Query: 202 ATQIV-YVA------RNP--------------KDVLTALVANDPGDWKNEIPNSVDYVQT 240
Q+ YV P + ++TA+ + W++ + +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 241 LASPRFI--KTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRP---------PLDYIKQI 289
L FI + + Y ++ P ++E +E G P + ++
Sbjct: 303 LF---FIGVRCYEAYPNT-----SLPPSILEDSLENNE--GVPSPMLSISNLTQEQVQDY 352
Query: 290 MRDMN-------VVYVA-RN-PKDVCV-----SYYHYCKLIHHLQDPEGKYFDDFCELFL 335
+ N V ++ N K++ V S Y + + P G D
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL--D------- 403
Query: 336 QGNAPMG-----------PI-----CPHMLEFWNKRTEDNILFLKYEDMKKDQ---KGAI 376
Q P P+ + D I +D+ K+
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLL-----VPASDLIN----KDLVKNNVSFNAKD 454
Query: 377 LQTAQFL---GK--QISDDNIA-ALID 397
+Q + G ++ +I+ ++D
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVD 481
Score = 37.7 bits (87), Expect = 0.009
Identities = 44/255 (17%), Positives = 78/255 (30%), Gaps = 100/255 (39%)
Query: 60 GRVVIPPKFKEMGE----VIYN------METKEPQ-------YVTYEKLESECGDKLDSM 102
G++ FKE+ E + T+ Q +E L+S+ D+
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 103 F-GLKDCLLRVHPGRVVIPPKFKEMGEVIYN--------MEVRPDDVWLVSFPRTGSTWA 153
F G H +GE Y M + V +V F R G T
Sbjct: 1759 FAG--------HS-----------LGE--YAALASLADVMSIE-SLVEVV-FYR-GMTMQ 1794
Query: 154 QEMVWLLGHDLDYEGAKVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLAATQIV-YVARNP 212
+ +Y + P V ++++QE A +V V +
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRV--------AASFSQE---------ALQYVVERVGKRT 1837
Query: 213 KDVLTALVANDPGDWKNEIPNSVDYV--------QTLAS-PRFIKTHLPYSLLPKQIATV 263
++ + N N + N YV T+ + FIK ++I +
Sbjct: 1838 GWLVE--IVNY-----N-VENQQ-YVAAGDLRALDTVTNVLNFIKL--------QKIDII 1880
Query: 264 KPKV------IEGMI 272
+ + +EG +
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
Score = 33.1 bits (75), Expect = 0.31
Identities = 36/241 (14%), Positives = 71/241 (29%), Gaps = 71/241 (29%)
Query: 261 ATVKPKVIE-GMIEGTNIVGRPPLDYIK-QIMRD---MNVVYVARN------PKDVCVSY 309
+ +P + G +E +V P + +++ + P
Sbjct: 4 YSTRPLTLSHGSLEHVLLV--PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 310 YHYCKLIHHLQDPE--GKY-------FDDFCELFLQGNAPMGPICPHMLEFWNKRTEDNI 360
+ + L +P G++ +F +L+GN I H L
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN----DI--HALAA--------- 106
Query: 361 LFLKYEDMKKDQKGAILQT----AQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPIL 416
L+ D + +++ + + +AL F + + A L I
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-----FRAVGEGNAQ-LVAIF 160
Query: 417 --QKMDKPAEKRNSEDTF--LR------KGVVGDYKNQMSPELIR------KFDDFVSEG 460
Q N++D F LR +VGD + L + ++G
Sbjct: 161 GGQG--------NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 461 L 461
L
Sbjct: 213 L 213
Score = 31.9 bits (72), Expect = 0.61
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 37/120 (30%)
Query: 188 WAQEMVWLLGHDLAATQIVYVARNPKDV----------LTALVANDPGDWKNEIPNSVDY 237
+ + D+ VY + D+ + + P W+
Sbjct: 444 VKNNVSFN-AKDIQIP--VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE--------- 491
Query: 238 VQTLASPRFIKTHL----PYSLLPKQIATVKPKVIEG----MIEGTNIVGRPPLDY-IKQ 288
+ +F TH+ P + + + +G +I + P DY KQ
Sbjct: 492 ----TTTQFKATHILDFGPGGA--SGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 31.6 bits (71), Expect = 0.74
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 18/63 (28%)
Query: 430 DTFLR------KGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLS------------FDDT 471
+ F + +G D + EL+ KF +VS + S + F++
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 472 FLR 474
+L
Sbjct: 95 YLE 97
>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown
function; HET: PLM; 2.60A {Mycobacterium avium}
Length = 414
Score = 59.5 bits (143), Expect = 1e-09
Identities = 36/282 (12%), Positives = 89/282 (31%), Gaps = 22/282 (7%)
Query: 140 VWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDVWLVSFP--RTGSTWAQEMVWLLG 197
+ ++ PRTG+T + L D R W P + + L
Sbjct: 109 LIVLGMPRTGTTVISYL---LDQD-----PARRSLLHWQCVHPIPPASTETLRTDPRCLA 160
Query: 198 HDLAATQIVYVARNPK----DVLTALVANDPGDWKNEIPNSVDYVQTLASPRFIKTHLPY 253
+I+ K A + N+ + + L + R+ +
Sbjct: 161 LLDEQRKILDAVTRAKMPLPHWEDADGPTEDMFIHNQDFKGLSWDSFLPTDRYARWLFDE 220
Query: 254 SLLPKQIATVKP--KVIEGMIEGTNIVGRPP----LDYIKQIMRDMNVVYVARNPKDVCV 307
+ + K +V++ G+ + P ++ + ++ D +++ R+P
Sbjct: 221 ADMSSTYEYQKRYLQVLQSTAPGSWSLKMPSHSVHIEALLKVFPDARLIWAHRDPYKATG 280
Query: 308 SYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRTEDNILFLKYED 367
S + +L L D E+ M L + ++ + Y +
Sbjct: 281 SLCNLWRLPQSLVMNT--ELLDQTEMGRLAMWQMRYHVDRPLRARERIGDERFFHMYYHE 338
Query: 368 MKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPA 409
M +D + + ++ + ++ + A + + L+ +
Sbjct: 339 MMRDPMDVMRRIYEWADEPLTAETEARMRNWLAHHPQDRFAL 380
>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A
{Mycobacterium tuberculosis}
Length = 384
Score = 55.3 bits (132), Expect = 2e-08
Identities = 41/304 (13%), Positives = 87/304 (28%), Gaps = 30/304 (9%)
Query: 116 RVVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDD 175
R++ +K+ E + RP +++ RTG+T + LG D +
Sbjct: 72 RLLSQSAWKQYPEHVDVAIKRP--IFVTGLVRTGTTALHRL---LGAD-----PAHQGLH 121
Query: 176 VWLVSFP---------RTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGD 226
+WL +P + + Q H + L
Sbjct: 122 MWLAEYPQPRPPRETWESNPLYRQLDADFTQHHAENPGYTGLHFMAAYELEECWQLLRQS 181
Query: 227 WKNEIPNSV----DYVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPP 282
+ ++ Y L+ + ++ + + I + + +++
Sbjct: 182 LHSVSYEALAHVPSYADWLSRQDWTPSYCRHRRNLQLIGLNDAEKRWVLKNPSHLFA--- 238
Query: 283 LDYIKQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMG 342
LD + D VV R + + S C L H + F ++
Sbjct: 239 LDALMATYPDALVVQTHRPVETIMASM---CSLAQHTTEGWSTKFVG-AQIGADAMDTWS 294
Query: 343 PICPHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFN 402
K + Y D+ D G + + G +SD+ A+ + +
Sbjct: 295 RGLERFNAARAKYDSAQFYDVDYHDLIADPLGTVADIYRHFGLTLSDEARQAMTTVHAES 354
Query: 403 KMRD 406
+
Sbjct: 355 QSGA 358
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 50.6 bits (120), Expect = 5e-07
Identities = 35/294 (11%), Positives = 88/294 (29%), Gaps = 27/294 (9%)
Query: 175 DVWLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNS 234
+ ++V + G++ +L H +Y+ K+ + + P +
Sbjct: 10 NFFIVGAAKCGTSSLDR--YLSQHPD-----IYIPP-KKEAHFFSIPDFPERFTGPGDEG 61
Query: 235 VDYVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMRDMN 294
++ I+ Y + V+ + G + + D
Sbjct: 62 MNL-------YTIRDEDAY---MRLFDGVRGERAVGEASVFYLFYPGTAQRMYDAYPDAK 111
Query: 295 VVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPM------GPICPHM 348
++ + RNP D S Y + + E Q P+ G +
Sbjct: 112 ILIMLRNPVDRAFSAYMHLVRDERETLSFRESLAKEEERIRQHYEPLWYYRAVGLYAAQV 171
Query: 349 LEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNP 408
+ + + + + +E+ +D + FLG ++ + S +
Sbjct: 172 KRYLDVFGREQVKVILFEEFARDPVQVVRDCCAFLGVSTDFVPDTSIRHNESGVPKSRSL 231
Query: 409 ATNLE--PILQKMDKPAEKRNSEDTFLRKG-VVGDYKNQMSPELIRKFDDFVSE 459
+ L+++ KP + + + + +M P+L + F +
Sbjct: 232 YNFIAKPNALKEIVKPFIPAAVRERLGNRAKSMVLGRMEMEPDLREELTAFFAP 285
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 50.2 bits (119), Expect = 6e-07
Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 25/178 (14%)
Query: 284 DYIKQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGP 343
+ I + + ++ + R+P + +S Y H + +D + N
Sbjct: 93 ERIHSMNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGRLNLDYKA 152
Query: 344 ICP-----HMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDH 398
+ HML + +I + + + +D I + +FL + +
Sbjct: 153 LNRSLYHAHMLNWLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQIN-----ASN 207
Query: 399 LSFNKMRDNPATNLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDF 456
FNK + R+S G Q+ P+L+ K ++
Sbjct: 208 FYFNKTKGFYC---------------LRDSGKDRCLHESKGRAHPQVDPKLLDKLHEY 250
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP,
haparin sulfate, haparin sulfate biosynthesis,
glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP:
c.37.1.5
Length = 325
Score = 50.3 bits (119), Expect = 7e-07
Identities = 32/299 (10%), Positives = 74/299 (24%), Gaps = 64/299 (21%)
Query: 172 RPDDVWLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEI 231
R + ++ +TG+T +L H + + + N ++ I
Sbjct: 46 RFPKLLIIGPQKTGTTALYL--FLGMHP----DLSSNYPSSETFEEIQFFNGH-NYHKGI 98
Query: 232 PNSVDYVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIMR 291
+++ ++ ++
Sbjct: 99 DWYMEFFPIPSN--------------------TTSDFYFEKSANYFDSEVAPRRAAALLP 138
Query: 292 DMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPM---------- 341
V+ + NP D S+Y H + + +
Sbjct: 139 KAKVLTILINPADRAYSWYQ-----HQRAHDDPVALKYTFHEVITAGSDASSKLRALQNR 193
Query: 342 ----GPICPHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALID 397
G H+ + + + IL L + ++ + + +FLG N
Sbjct: 194 CLVPGWYATHIERWLSAYHANQILVLDGKLLRTEPAKVMDMVQKFLGV----TNTIDYHK 249
Query: 398 HLSFNKMRDNPATNLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDF 456
L+F+ + LE K ++ R +M + D+
Sbjct: 250 TLAFDPKKGFWCQLLEGGKTKCLGKSKGRKYP--------------EMDLDSRAFLKDY 294
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-06
Identities = 70/446 (15%), Positives = 128/446 (28%), Gaps = 150/446 (33%)
Query: 8 PPVQTESQKTATKEESVTKEPQYVTYEKLESECGDKLD--------SMFGLKDCLLRVHP 59
++ S + + + K Y C L + F L C
Sbjct: 223 IKLRIHSIQAELRR--LLKSKPYE-------NCLLVLLNVQNAKAWNAFNLS-C------ 266
Query: 60 GRVVIPPKFKEMGEVIYNMETKEPQYVTYEKLESECGDKLDSMFGL-----KDCL----L 110
++++ +FK++ + + T + + D++ S+ L L
Sbjct: 267 -KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVL 323
Query: 111 RVHPGRVVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAK 170
+P R+ I + E I + D W L ++
Sbjct: 324 TTNPRRLSI------IAESIRDGLATWD------------NWKHVNCDKLTTIIESSLNV 365
Query: 171 VRPDDV-----WLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPG 225
+ P + L FP + P +L+ +
Sbjct: 366 LEPAEYRKMFDRLSVFP--------PSAHI----------------PTILLSLI------ 395
Query: 226 DWKNEIPNSV-DYVQTLASPRFIKTHLPYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLD 284
W + I + V V L YSL+ KQ K I I + + L+
Sbjct: 396 -WFDVIKSDVMVVVNKLHK---------YSLVEKQ---PKESTIS--IPSIYLELKVKLE 440
Query: 285 YIKQIMRDMNVVYVARNPKDVCVSY--------YHYCKLIHHLQDPE-GKYFDDFCELFL 335
+ R + Y PK Y Y + HHL++ E + F +FL
Sbjct: 441 NEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 336 QGNAPMGPICPHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQ---FLGKQISDDN- 391
F ++ ++++ + G+IL T Q F I D++
Sbjct: 499 D------------FRFLEQK-------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 392 -----IAALIDHLSFNKMRDNPATNL 412
+ A++D L NL
Sbjct: 540 KYERLVNAILDFLP------KIEENL 559
Score = 48.7 bits (115), Expect = 5e-06
Identities = 36/207 (17%), Positives = 67/207 (32%), Gaps = 45/207 (21%)
Query: 304 DVCVSYYHYCKLIHHLQDPEGKYFD-----DFCELFLQGNAPMGPIC--PHMLE-----F 351
+ Y Y ++ +D FD D + L + I + F
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLF 68
Query: 352 WNKRTEDNILFLKYEDMKKDQKGAILQTA-QFLGKQISDDNIAALIDHLSFNKMRDNPAT 410
W L K E+M + +L+ +FL I + + + + RD
Sbjct: 69 W-------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLY 120
Query: 411 NLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDFVSEGLAGSGLSFDD 470
N + K + R LR+ ++ ++ P + + +G+ GSG
Sbjct: 121 NDNQVFAKYNVS---RLQPYLKLRQALL-----ELRPA-----KNVLIDGVLGSG----K 163
Query: 471 TFLRKGVVGDYKNQMSPELIRKFDDFV 497
T++ V YK + K D +
Sbjct: 164 TWVALDVCLSYK------VQCKMDFKI 184
Score = 45.6 bits (107), Expect = 3e-05
Identities = 75/568 (13%), Positives = 144/568 (25%), Gaps = 205/568 (36%)
Query: 5 DILP-------------PVQTESQKTATKEE--SVTKEPQYVTYEKLESECGDKLDSMFG 49
DIL VQ + +KEE + V+ +F
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS----------GTLRLFW 69
Query: 50 LKDCLLRVHPGRVVIPPKFKEMGEVIYNMETKEPQY-VTYEKLESECGDKLDSMFGLKDC 108
L +V KF + EV+ Y +++E +
Sbjct: 70 T----LLSKQEEMV--QKF--VEEVL------RINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 109 LLRVHPGRVVIPPKFKEMGEVIYNMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEG 168
R++ V YN+ R + R LL
Sbjct: 116 RDRLYNDNQVFAK---------YNVS-RLQPYLKL---RQ---------ALL-------- 145
Query: 169 AKVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWK 228
++RP ++ GS G K + V +
Sbjct: 146 -ELRPAK-NVLIDGVLGS----------G---------------KTWVALDVCLSY-KVQ 177
Query: 229 NEIPNSVDYVQTLASPRFIKTHLPYSLLPKQ---IATVKPKVIEGMIEGTNIVGRPPLDY 285
++ + ++ + P ++L + + P +NI + +
Sbjct: 178 CKMDFKIFWL------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHS 229
Query: 286 IKQIMRDMNVVYVARNPKDVCVSYYHYCKLI-HHLQDPEG-KYFDDFCEL---------- 333
I+ +R + P Y C L+ ++Q+ + F+ C++
Sbjct: 230 IQAELRR----LLKSKP-------YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 334 -FLQGNAPMGPICPHMLE-FWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDN 391
FL H + L LKY D + L +++ N
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQD----------LPREVLTTN 326
Query: 392 ------IAALIDHLSFNKMRDNPAT-------NLEPILQKMD------KPAEKRN----- 427
IA I RD AT N + + ++ +PAE R
Sbjct: 327 PRRLSIIAESI--------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 428 ---SEDTFLRKGVVGDYKNQMSPELIRKF-DDFVSEGLAGS----------GLSFD---- 469
+ ++ + + + L + +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 470 ---DTFLRKGVVGDYKNQMSPELIRKFD 494
+ L + +V Y + + FD
Sbjct: 439 LENEYALHRSIVDHYN------IPKTFD 460
Score = 41.0 bits (95), Expect = 0.001
Identities = 43/355 (12%), Positives = 106/355 (29%), Gaps = 102/355 (28%)
Query: 19 TKEESVTKEPQYVTYEKLESECGDKLD-SMFGLKDCLLRVHPGRV-VIPPKFKEMGEVIY 76
T S+ +T ++++S LD L +L +P R+ +I ++
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 77 NMETKEPQYVTYEKLESECGDKLDSMFGLKDCLLRVHPGRVVIPPKFKEMGEVIY-NMEV 135
N ++V +KL + ++ L V+ P ++++M + + V
Sbjct: 346 NW-----KHVNCDKLTTI----------IESSL------NVLEPAEYRKM----FDRLSV 380
Query: 136 RPDDVWLVSFPRTGSTWAQ--EMVWLLGHDLDYEGAKVRPDDVWLVSFPRTG--STWAQE 191
P + P ++W D+ V + + +E
Sbjct: 381 FPPSAHI---P------TILLSLIWF---DVIKSD----VMVV-VNKLHKYSLVEKQPKE 423
Query: 192 MVWLLGHDLAATQIVYVARNPKD------VLTALVANDPGDWKNEIPNSVD-YVQTLASP 244
+ + + + + ++ D + IP +D Y
Sbjct: 424 STISI-PSI---YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------- 472
Query: 245 RFIKTHLPYSLLPKQIA---TVKPKV------IEGMI--EGTNIVGRPPL---------- 283
+H+ + L + T+ V +E I + T +
Sbjct: 473 --FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 284 -DYI-------KQIMRD-MNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDD 329
YI ++++ ++ + ++ + + L L + F++
Sbjct: 531 KPYICDNDPKYERLVNAILDFL---PKIEENLICSKYTDLLRIALMAEDEAIFEE 582
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
3ap3_A*
Length = 337
Score = 48.7 bits (116), Expect = 2e-06
Identities = 16/142 (11%), Positives = 35/142 (24%), Gaps = 35/142 (24%)
Query: 283 LDYIKQIMRDMNVVYVARNPKDVCVSYY---------HYCKLIHHLQDPEGKYFDDFCEL 333
Y+ ++ + + + R+ + S +D K+
Sbjct: 144 SVYLSRLFPNSKFLLMVRDGRASVHSMITRKVTIAGFDLS----SYRDCLTKWNKAIEV- 198
Query: 334 FLQGNAPMGPICPHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIA 393
M + ++ L + YE + + ++ FLG SD
Sbjct: 199 --------------MYAQCMEVGKEKCLPVYYEQLVLHPRRSLKLILDFLGIAWSD---- 240
Query: 394 ALIDHLSFNKMRDNPATNLEPI 415
L + P
Sbjct: 241 ---AVLHHEDLIGKPGGVSLSK 259
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 46.0 bits (108), Expect = 1e-05
Identities = 20/180 (11%), Positives = 46/180 (25%), Gaps = 26/180 (14%)
Query: 284 DYIKQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGP 343
+ I ++ + ++ + R P +S Y ++ F+
Sbjct: 101 ERIYKMNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKTYYKFEKLAIDPNTCEVNTKY 160
Query: 344 IC-------PHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALI 396
H+ + + + + + + + +FL
Sbjct: 161 KAVRTSIYTKHLERWLKYFPIEQFHVVDGDRLITEPLPELQLVEKFLNLPPRISQ----- 215
Query: 397 DHLSFNKMRDNPATNLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDF 456
+L FN R I K ++ R ++ P +I K F
Sbjct: 216 YNLYFNATRGFYCLRFNEIFNKCLAGSKGR--------------IHPEVDPSVITKLRKF 261
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1;
alpha-beta motif, substrate-binding cleft; HET: A3P CIT;
1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Length = 271
Score = 44.4 bits (104), Expect = 4e-05
Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 21/174 (12%)
Query: 287 KQIMRDMNVVYVARNPKDVCVS-YYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPM---G 342
+ +D ++ V R+P +S Y + E F + + + G
Sbjct: 95 SAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQIG 154
Query: 343 PICPHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFN 402
H+ + +LF+ E + D G + + FLG + + H FN
Sbjct: 155 IYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITD-----KHFYFN 209
Query: 403 KMRDNPATNLEPILQKMDKPAEKRNSEDTFLRKGVVGDYKNQMSPELIRKFDDF 456
K + P L+K + + T R ++ E++R+ +F
Sbjct: 210 KTKG------FPCLKKAEGSSRPHCLGKTKGRT------HPEIDREVVRRLREF 251
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH
trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium
smegmatis} SCOP: c.37.1.5
Length = 287
Score = 39.5 bits (91), Expect = 0.001
Identities = 33/257 (12%), Positives = 76/257 (29%), Gaps = 30/257 (11%)
Query: 132 NMEVRPDDVWLVSFPRTGSTWAQEMVWLLGHDLDYEGAKVRPDDVWLVSFPRTGSTWAQE 191
+M P +++ R+GST L L G P + + + S +E
Sbjct: 20 HMSDHPTAYLVLASQRSGSTL-------LVESLRATGVAGEPQEFFQYLPNTSMSPQPRE 72
Query: 192 MVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVDYVQTLASPRFIKTHL 251
W + + +L L G P+ + +
Sbjct: 73 --WFADVE------------DQSILRLLDPLIEGK-----PDLAPATIWRDYIQTVGRTP 113
Query: 252 PYSLLPKQIATVKPKVIEGMIEGTNIVGRPPLDYIKQIM-RDMNVVYVAR-NPKDVCVSY 309
K + P +++ + + G L I+ ++ D ++++ R + VS+
Sbjct: 114 NGVWGGKLMWNQTPLLVQRAKDLPDRSGSGLLSAIRDVVGSDPVLIHIHRPDVVSQAVSF 173
Query: 310 Y--HYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRTEDNILFLKYED 367
+ ++ DP ++ + M W + + Y
Sbjct: 174 WRAVQTRVWRGRPDPVRDARAEYHAGAIAHVITMLRAQEEGWRAWFTEENVEPIDVDYPY 233
Query: 368 MKKDQKGAILQTAQFLG 384
+ ++ + + LG
Sbjct: 234 LWRNLTEVVGTVLEALG 250
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP
kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium
tuberculosis}
Length = 281
Score = 32.3 bits (73), Expect = 0.31
Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 12/144 (8%)
Query: 280 RPPLDYIKQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNA 339
R DY+ + MN + + + + I Q E +G
Sbjct: 113 RTRSDYMGMLGTVMNSLALQDFLEKEGI-VTRVQTAITMGQVAEPYLPLRAVRHLEKGRV 171
Query: 340 PMGPICPHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHL 399
+ + F + D + ++ D + + A L+ +
Sbjct: 172 VIFGAGMGLPYF----STDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAV 227
Query: 400 SFNKMRDNPATNLEPILQKMDKPA 423
S ++ L+ L+ D A
Sbjct: 228 SHREV-------LDRGLRVADATA 244
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP:
c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Length = 247
Score = 29.9 bits (67), Expect = 1.9
Identities = 22/178 (12%), Positives = 58/178 (32%), Gaps = 24/178 (13%)
Query: 258 KQIATVKPKVIE--GMIEGTNI----------VGRPPLDYIKQIMRDMNVVYVARNPKDV 305
+I + +E ++ G N+ + R D++ + MN + + +
Sbjct: 38 VEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRA 97
Query: 306 CVSYYHYCKLIHHLQDPEGKYFDDFCELFLQGNAPMGPICPHMLEFWNKRTEDNILFLKY 365
V+ + + + ++ + + F T D+ L+
Sbjct: 98 DVNAKLMSA-FQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFF----TTDSTACLRG 152
Query: 366 EDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPILQKMDKPA 423
+++ D + + + A L +LS+ ++ ++ L+ MD A
Sbjct: 153 IEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEV-------IDKELKVMDLSA 203
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation,
ATP-binding, nucleotid binding, pyrimidine biosynthesis,
transferase; 2.34A {Xanthomonas campestris PV} PDB:
3ek5_A
Length = 243
Score = 29.1 bits (65), Expect = 3.1
Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 18/157 (11%)
Query: 270 GMIEGTNIVGRPPLDYIKQIMRDMNVVYVARNPKDVCVSYYHYCKLIHHLQDPEGKYFDD 329
G + + R D++ + +N + + + + I E
Sbjct: 63 GAGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMS-AIKINDVCEDFIRRR 121
Query: 330 FCELFLQGN---APMGPICPHMLEFWNKRTEDNILFLKYEDMKKDQKGAILQTAQFLGKQ 386
+G G P T D+ L+ ++ D + K
Sbjct: 122 AIRHLEKGRIAIFAAGTGNPFF-------TTDSGAALRAIEIGADLLLKATKVDGVYDKD 174
Query: 387 ISDDNIAALIDHLSFNKMRDNPATNLEPILQKMDKPA 423
+ A D L+++++ + L+ MD A
Sbjct: 175 PKKHSDAVRYDSLTYDEV-------IMQGLEVMDTAA 204
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO;
HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Length = 714
Score = 29.0 bits (65), Expect = 4.5
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 186 STWAQEMVWLLGHDLAATQIVYVARNPKDVLTALVANDPGDWKNEIPNSVDYVQTLAS 243
+ + + +V L G L +Q+ ++ V + + S D+V +
Sbjct: 50 AEYRKPVVKLGGETLTISQVAAISARDGS--GVTVELSE-AARAGVKASSDWVMDSMN 104
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 28.2 bits (62), Expect = 8.0
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 50 LKDCLLRVHPGRVVIPP 66
L + LL + IP
Sbjct: 64 LYERLLVKFGSAIPIPS 80
Score = 28.2 bits (62), Expect = 8.0
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 105 LKDCLLRVHPGRVVIPP 121
L + LL + IP
Sbjct: 64 LYERLLVKFGSAIPIPS 80
>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E,
botulism, domain organization, endopeptidase,
translocation, hydrolase; 2.65A {Clostridium botulinum}
Length = 1252
Score = 28.2 bits (62), Expect = 9.0
Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 364 KYEDMKKDQKGAILQTAQFLGKQISDDNIAALIDHLSFNKMRDNPATNLEPILQKMDKPA 423
++ K+ A+ + I + K +++ I ++++
Sbjct: 696 QFNKRKEQMYQALQNQVNAIKTIIESK----YNSYTLEEKNELTNKYDIKQIENELNQKV 751
Query: 424 EKR-NSEDTFLRKGVVGDYKNQMSPELIRKFDDF 456
N+ D FL + + ++ I K ++
Sbjct: 752 SIAMNNIDRFLTESSISYLMKIINEVKINKLREY 785
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.421
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,200,934
Number of extensions: 516693
Number of successful extensions: 1156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 72
Length of query: 510
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 412
Effective length of database: 3,965,535
Effective search space: 1633800420
Effective search space used: 1633800420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.1 bits)