RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10121
(548 letters)
>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain.
Length = 254
Score = 148 bits (375), Expect = 5e-41
Identities = 94/317 (29%), Positives = 118/317 (37%), Gaps = 99/317 (31%)
Query: 64 DDDVWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEIL----PARFPFLELTPLFDYRNNP 119
DDDV + ++PK+GTTW QE++ I N DFE +E R PFLE LF
Sbjct: 1 DDDVLIVTYPKSGTTWLQEILSLIPNRGDFEKFEEPHLFNPHNRSPFLEWYDLF------ 54
Query: 120 NLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQNLKG 179
V + L
Sbjct: 55 -------------------------------------------VIFDVAEGPVRLNALPS 71
Query: 180 RRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNPKDTCVSYYHH--CHLMEGYRGDFDDFL 237
R IK HLP LLPK L NAKIIY+ RNPKD VSYYH + G +F+
Sbjct: 72 PRIIKTHLPLHLLPKSLWD--PNAKIIYLVRNPKDVAVSYYHFFRMAKILKAPGTPFEFV 129
Query: 238 KLFLNDAGNFSARLALARLFPQPDSFFTPIL-------IKKFLF------PQDLGSIITQ 284
+ FLN N S+F + LF +D I +
Sbjct: 130 EDFLNGKVNCG-------------SYFDHVKGWWKLRPPGNILFLRYEDLKKDPRGEIKK 176
Query: 285 VATHLDKSLTDDQV-----HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSG 339
+A L LT++++ HLSFE+MK NP NY KL + F R G
Sbjct: 177 IAEFLGIPLTEEELDKIVKHLSFENMKGNPCLNYS---------KLPKHEV--SPFFRKG 225
Query: 340 QVGGWKAVMTPEIAEHV 356
VG WK T E AE
Sbjct: 226 LVGDWKNYFTVEQAEKF 242
Score = 115 bits (291), Expect = 3e-29
Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V Y+DHV +W + N+LF++YED+KKD I ++A L LT++++D + +
Sbjct: 137 VNCGSYFDHVKGWWK-LRPPGNILFLRYEDLKKDPRGEIKKIAEFLGIPLTEEELDKIVK 195
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
HLSFE+MK NP NY KL + F R G VG WK T E E+FD
Sbjct: 196 HLSFENMKGNPCLNYS---------KLPKHEV--SPFFRKGLVGDWKNYFTVEQAEKFDE 244
Query: 536 WTRTKTKGSD 545
+ K KG+
Sbjct: 245 IYQEKMKGTG 254
>gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase.
Length = 346
Score = 61.5 bits (149), Expect = 3e-10
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 418 FAPYWDHVLEFW-AVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQ-----VD 471
+ PY DHVL +W A + D +LF+KYE M+ D + ++A + T ++ V+
Sbjct: 213 YGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEEEKGVVE 272
Query: 472 ILKQHLSFESMKSNPATNYEFAIDFNKENKLIDDK---FCAGKFMRSGQVGGWKAVMTPE 528
+ + SFE++K+ ++ NK K +D+ + + R G+VG W+ +TPE
Sbjct: 273 KVVKLCSFETLKN---------LEANKGEKDREDRPAVYANSAYFRKGKVGDWQNYLTPE 323
Query: 529 IVEQFDPWTRTKTKGSDF 546
+ + D K KG+
Sbjct: 324 MAARIDGLMEEKFKGTGL 341
Score = 58.0 bits (140), Expect = 5e-09
Identities = 79/331 (23%), Positives = 125/331 (37%), Gaps = 95/331 (28%)
Query: 63 RDDDVWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEILPARFPFLELTPLFDYRNNPNLD 122
R +D VCS+PKTGTTW + + + IAN F+ + L R P E P
Sbjct: 78 RPNDFLVCSYPKTGTTWLKALTFAIANRSRFDDSSNPLLKRNPH-EFVP----------- 125
Query: 123 APDFEENSVVHIQNLKGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRF 182
+I+ P P D + KG
Sbjct: 126 -------------------YIEIDFPFFPSVDVLKD-------------------KGNTL 147
Query: 183 IKAHLPFKLLPKKL-QSGTTNAKIIYVTRNPKDTCVSYYHHCHLMEGYRG-------DFD 234
H+P+ LLP + +SG K++Y+ R+PKDT +S + H +G FD
Sbjct: 148 FSTHIPYGLLPDSVVKSG---CKMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESFD 204
Query: 235 DFLKLFLNDAGNFSARLALARLFPQ-PDSFFTPILIKKF-LFPQDLGSIITQVATHLDKS 292
F + L + + + PD IL K+ D + ++A +
Sbjct: 205 MFCRGLSVYGPYLDHVLGYWKAYQENPDR----ILFLKYETMRADPLPYVKRLAEFMGYG 260
Query: 293 LTDDQ---------VHL-SFESMKSNPATNYEFAIDFNKENKLIDDK---FCAGKFMRSG 339
T ++ V L SFE++K+ ++ NK K +D+ + + R G
Sbjct: 261 FTAEEEEKGVVEKVVKLCSFETLKN---------LEANKGEKDREDRPAVYANSAYFRKG 311
Query: 340 QVGGWKAVMTPEIAEHVSDETEIGKLLRSKF 370
+VG W+ +TPE+A I L+ KF
Sbjct: 312 KVGDWQNYLTPEMA------ARIDGLMEEKF 336
>gnl|CDD|234328 TIGR03721, exospore_TM, BclB C-terminal domain. This domain occurs
as the C-terminal region in a number of proteins that
have extensive collagen-like triple helix repeat
regions. Member domains are predicted by TmHMM to have
four or five transmembrane helices. Members are found
mostly in the Firmicutes, but also in Acanthamoeba
polyphaga mimivirus. Members include spore surface
glycoprotein BclB from Bacillus anthracis, a protein of
the exosporium. The exosporium is an additional
outermost spore layer, lacking in B. subtilis and most
other spore formers, consisting of a basal layer and,
above it, a nap of fine filaments.
Length = 165
Score = 32.2 bits (73), Expect = 0.37
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 17/64 (26%)
Query: 244 AGNFSARLALARL-----------FPQPDSFFTPI------LIKKFLFPQDLGSIITQVA 286
A FSA ALA L P P + FTP+ L P +GS + +
Sbjct: 65 AAYFSATAALALLGPVTITAQLYIAPAPSNVFTPVPGAPVTLTPPITGPIAVGSTASGII 124
Query: 287 THLD 290
T L+
Sbjct: 125 TGLN 128
>gnl|CDD|150335 pfam09634, DUF2025, Protein of unknown function (DUF2025). This
protein is produced from gene PA1123 in Pseudomonas. It
contains three alpha helices and six beta strands and
is thought to be monomeric. It appears to be present in
the biofilm layer and may be a lipoprotein.
Length = 106
Score = 29.4 bits (66), Expect = 1.6
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 48 EYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIAND 90
Y V F+ED MDV DD + S E VW D
Sbjct: 27 RYIVRFSEDSFGMDVADDSITPTS----------EFVWASVRD 59
>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE,
also called MnmE and previously designated ThdF
(thiophene and furan oxidation protein), is a GTPase
involved in tRNA modification to create
5-methylaminomethyl-2-thiouridine in the wobble position
of some tRNAs. This protein and GidA form an
alpha2/beta2 heterotetramer [Protein synthesis, tRNA and
rRNA base modification].
Length = 442
Score = 29.8 bits (67), Expect = 4.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 439 LFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQHL 477
L K E ++K L ++ QV ++D DD+ D L Q L
Sbjct: 143 LDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQDSLNQLL 181
>gnl|CDD|237890 PRK15055, PRK15055, anaerobic sulfite reductase subunit A;
Provisional.
Length = 344
Score = 29.2 bits (66), Expect = 5.2
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 478 SFE-----SMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQ 532
SFE SM +N NY A+ F+++ L+D K +F + Q GG + TPE VE+
Sbjct: 138 SFENCFCVSMGTNKTDNYSAAVRFDEDGVLVDIK--DEEFEKYFQGGGEEEEFTPEFVEE 195
>gnl|CDD|240743 cd12297, RRM2_Prp24, RNA recognition motif 2 in fungal
pre-messenger RNA splicing protein 24 (Prp24) and
similar proteins. This subfamily corresponds to the
RRM2 of Prp24, also termed U4/U6
snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an
RNA-binding protein with four well conserved RNA
recognition motifs (RRMs), also termed RBDs (RNA binding
domains) or RNPs (ribonucleoprotein domains). It
facilitates U6 RNA base-pairing with U4 RNA during
spliceosome assembly. Prp24 specifically binds free U6
RNA primarily with RRMs 1 and 2 and facilitates pairing
of U6 RNA bases with U4 RNA bases. Additionally, it may
also be involved in dissociation of the U4/U6 complex
during spliceosome activation. .
Length = 78
Score = 27.1 bits (61), Expect = 5.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 67 VWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEILPARFPFL 107
+WV +FP ++ Q + DL FE EIL RFP L
Sbjct: 3 LWVTNFP---PSFDQSDI----RDL-FEQYGEILSIRFPSL 35
>gnl|CDD|130549 TIGR01485, SPP_plant-cyano, sucrose-6F-phosphate phosphohydrolase.
This model describes the sucrose phosphate
phosphohydrolase from plants and cyanobacteria (SPP).
SPP is a member of the Class IIB subfamily (TIGR01484)
of the Haloacid Dehalogenase (HAD) superfamily of
aspartate-nucleophile hydrolases. SPP catalyzes the
final step in the biosynthesis of sucrose, a critically
important molecule for plants. This model is limited to
plants and cyanobacteria. However, a closely related
group of sequences from bacteria and archaea (TIGR*****)
may prove to catalyze the same reaction. If so, the
SPP-subfamily model (TIGR01482) containing both of these
groups should be promoted to equivalog and the two
smaller models retired. Sucrose phosphate synthase
(SPS), the prior step in the biosynthesis of sucrose
contains a domain which exhibits considerable similarity
to SPP albeit without conservation of the catalytic
residues. The catalytic machinery of the synthase
resides in another domain. It seems likely that the
phosphatase-like domain is involved in substrate
binding, possibly binding both substrates in a
"product-like" orientation prior to ligation by the
synthase catalytic domain.
Length = 249
Score = 28.6 bits (64), Expect = 7.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 256 LFPQPDSFFTPILIKKFLFPQDLGSIITQVATHLDKSLTDDQVHLS 301
L PQPD P + FL P+ +I Q+ L ++ D ++ S
Sbjct: 109 LKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYS 154
>gnl|CDD|218442 pfam05116, S6PP, Sucrose-6F-phosphate phosphohydrolase. This
family consists of Sucrose-6F-phosphate phosphohydrolase
proteins found in plants and cyanobacteria.
Sucrose-6(F)-phosphate phosphohydrolase catalyzes the
final step in the pathway of sucrose biosynthesis.
Length = 247
Score = 28.4 bits (64), Expect = 8.6
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 253 LARLFPQPDSFFTPILIKKFLFPQDLGSIITQVATHLDKSLTDDQVHLSF 302
L QP+ P + FL P+ +++ ++ L+K D +V S
Sbjct: 104 FPGLTLQPEEEQRPHKVSYFLDPEAAPAVLKELEQLLEKRGLDVKVIYSS 153
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.432
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,394,989
Number of extensions: 2785585
Number of successful extensions: 2138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2129
Number of HSP's successfully gapped: 28
Length of query: 548
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 446
Effective length of database: 6,413,494
Effective search space: 2860418324
Effective search space used: 2860418324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.5 bits)