RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10121
(548 letters)
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 204 bits (519), Expect = 5e-61
Identities = 93/360 (25%), Positives = 159/360 (44%), Gaps = 61/360 (16%)
Query: 13 FESVSDETEIGKLLRSKFTCSFRTGYVRC--KGVCMPEYYVNFAEDIINMDVRDDDVWVC 70
F ++ E + KL+++ +F T YV+ KG + Y+ A +I NM +R DV+V
Sbjct: 13 FRELNPEED--KLVKANLG-AFPTTYVKLGPKGYMVYRPYLKDAANIYNMPLRPTDVFVA 69
Query: 71 SFPKTGTTWTQEMVWCIANDLDFEAAKEILPARFPFLELTPLFDYRNNPNLDAPDFEENS 130
S+ ++GTT TQE+VW I NDL+FEAAK + R+ +L+ ++D P +
Sbjct: 70 SYQRSGTTMTQELVWLIENDLNFEAAKTYMSLRYIYLDGFMIYD----PEKQEEYNDILP 125
Query: 131 VVHIQNLKGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFK 190
+++ L +Y + P +S++ +RF+K HLP
Sbjct: 126 NPENLDMERY---------LGLLEYSSRPG--------SSLLAAVPPTEKRFVKTHLPLS 168
Query: 191 LLPKKLQSGTTNAKIIYVTRNPKDTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFS 248
L+P + K++Y+ R+P+D VS +HH L+ + +F DF ++F +
Sbjct: 169 LMPPNML---DTVKMVYLARDPRDVAVSSFHHARLLYLLNKQSNFKDFWEMFHRGLYTLT 225
Query: 249 ARLALARLFPQPD---SFFTPILIKKFLFP------QDLGSIITQVATHLDKSLTDDQV- 298
P + + LF +DL I ++A L K L+++Q+
Sbjct: 226 ---------PYFEHVKEAWAKRHDPNMLFLFYEDYLKDLPGCIARIADFLGKKLSEEQIQ 276
Query: 299 ----HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAE 354
HL+FE K+N A N E + F+R G+ G W+ E+ +
Sbjct: 277 RLCEHLNFEKFKNNGAVNMEDYREIGILAD-------GEHFIRKGKAGCWRDYFDEEMTK 329
Score = 144 bits (365), Expect = 8e-39
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 405 DDVWVCSFPKTVCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKS 464
D W PY++HV E WA + N+LF+ YED KDL I ++A L K
Sbjct: 211 KDFWEMFHRGLYTLTPYFEHVKEAWA-KRHDPNMLFLFYEDYLKDLPGCIARIADFLGKK 269
Query: 465 LTDDQVDILKQHLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAV 524
L+++Q+ L +HL+FE K+N A N E + F+R G+ G W+
Sbjct: 270 LSEEQIQRLCEHLNFEKFKNNGAVNMEDYREIGILAD-------GEHFIRKGKAGCWRDY 322
Query: 525 MTPEIVEQFDPWTRTKTKGSDFSF 548
E+ +Q + W + K +D +
Sbjct: 323 FDEEMTKQAEKWIKDNLKDTDLRY 346
Score = 49.2 bits (117), Expect = 2e-06
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 361 EIGKLLRSKFTCSFRTGYVRC--KGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTVC 417
E KL+++ +F T YV+ KG + Y+ A +I NM +R DV+V S+ ++
Sbjct: 19 EEDKLVKANLG-AFPTTYVKLGPKGYMVYRPYLKDAANIYNMPLRPTDVFVASYQRSGT 76
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 195 bits (497), Expect = 2e-58
Identities = 77/342 (22%), Positives = 125/342 (36%), Gaps = 82/342 (23%)
Query: 34 FRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLDF 93
FR V +G+ + + + + R DD+ + ++PK+GTTW E++ I N+ D
Sbjct: 8 FRRELVDVEGIPLFWSIAEHWSQVESFEARPDDILISTYPKSGTTWVSEILDLIYNNGDA 67
Query: 94 EAAKEILP-ARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPL 152
E K R PF+EL N V + N+ R +K T
Sbjct: 68 EKCKRDAIYKRVPFMELI-------------IPGITNGVEMLNNMPSPRIVK-----T-- 107
Query: 153 FDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNP 212
HLP +LLP + KIIYV RN
Sbjct: 108 ---------------------------------HLPVQLLPSSFW--KNDCKIIYVARNA 132
Query: 213 KDTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPDSFFTPILIK 270
KD VSYY+ + G +++FL+ F+ +F + S++
Sbjct: 133 KDVVVSYYYFYQMAKIHPEPGTWEEFLEKFMAGQVSFG------PWYDHVKSWWEKRKEY 186
Query: 271 KFLFP------QDLGSIITQVATHLDKSLTDDQV-----HLSFESMKSNPATNYEFAIDF 319
+ L+ ++ I ++ L+K + ++ + H SF MK NP+ NY +
Sbjct: 187 RILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKILYHSSFSVMKENPSANYTTMMKE 246
Query: 320 NKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAEHVSDETE 361
++ FMR G G WK T E ++
Sbjct: 247 EMDHS-------VSPFMRKGISGDWKNQFTVAQYEKFEEDYV 281
Score = 139 bits (352), Expect = 1e-37
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V F P++DHV +W +K +L++ YEDMK++ I ++ L+K + ++ ++ +
Sbjct: 167 VSFGPWYDHVKSWWE-KRKEYRILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKILY 225
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
H SF MK NP+ NY + ++ FMR G G WK T E+F+
Sbjct: 226 HSSFSVMKENPSANYTTMMKEEMDHS-------VSPFMRKGISGDWKNQFTVAQYEKFEE 278
Query: 536 WTRTKTKGSDFSF 548
K + S F
Sbjct: 279 DYVKKMEDSTLKF 291
Score = 52.0 bits (125), Expect = 2e-07
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 374 FRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKT 415
FR V +G+ + + + + R DD+ + ++PK+
Sbjct: 8 FRRELVDVEGIPLFWSIAEHWSQVESFEARPDDILISTYPKS 49
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 193 bits (492), Expect = 2e-57
Identities = 66/397 (16%), Positives = 129/397 (32%), Gaps = 92/397 (23%)
Query: 1 MYRTTATVKMLQFESVSDETE--IGKLLRSKFTCSFRTGYVRCKGVCMPEYYV-NFAEDI 57
M +++ L E ++ ET I L + K + +G+ + +
Sbjct: 1 MSSSSSVPAYLGDEDLTQETRALISSLPKEK--GWLVSEIYEFQGLWHTQAILQGILICQ 58
Query: 58 INMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEILPARFPFLELTPLFDYRN 117
+ +D D+ + + PK+GTTW + +V+ + N F + P L
Sbjct: 59 KRFEAKDSDIILVTNPKSGTTWLKALVFALLNRHKFPVSSS---GNHPLLVT-------- 107
Query: 118 NPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQNL 177
NP+L P E + E+ +L
Sbjct: 108 NPHLLVPFLE------------------------------------GVYYESPDFDFSSL 131
Query: 178 KGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNPKDTCVSYYHHCHLM---EGYRGDFD 234
R + H+ LP+ ++ +++ KI+Y RNPKD VS +H + E +
Sbjct: 132 PSPRLMNTHISHLSLPESVK--SSSCKIVYCCRNPKDMFVSLWHFGKKLAPEETADYPIE 189
Query: 235 DFLKLFLNDAGNFSARLALARLF-----PQPDSFFTPILIKKFLF----PQDLGSIITQV 285
++ F + P+ F+ + + ++
Sbjct: 190 KAVEAFCEGKFIGGPFWDHILEYWYASRENPNKVL-------FVTYEELKKQTEVEMKRI 242
Query: 286 ATHLDKSLTDDQV------HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSG 339
A L+ +++ SFES+ + + + F R G
Sbjct: 243 AEFLECGFIEEEEVREIVKLCSFESLSNLEVNKEG----------KLPNGIETKTFFRKG 292
Query: 340 QVGGWKAVMTPEIAEHVSDETEIGKLLRSKFTCSFRT 376
++GGW+ ++ +AE + E K S F +
Sbjct: 293 EIGGWRDTLSESLAEEIDRTIE-EKFKGSGLK--FSS 326
Score = 136 bits (343), Expect = 5e-36
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 415 TVCFAPYWDHVLEFWAVAKKR-DNVLFIKYEDMKKDLGSIITQVATHLDKSLTDD-QVDI 472
P+WDH+LE+W +++ + VLF+ YE++KK + ++A L+ ++ +V
Sbjct: 199 KFIGGPFWDHILEYWYASRENPNKVLFVTYEELKKQTEVEMKRIAEFLECGFIEEEEVRE 258
Query: 473 LKQHLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQ 532
+ + SFES+ + + + F R G++GGW+ ++ + E+
Sbjct: 259 IVKLCSFESLSNLEVNKEG----------KLPNGIETKTFFRKGEIGGWRDTLSESLAEE 308
Query: 533 FDPWTRTKTKGSDFSF 548
D K KGS F
Sbjct: 309 IDRTIEEKFKGSGLKF 324
Score = 41.4 bits (97), Expect = 6e-04
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 349 TPEIAEHVSDETEIGKLLRS--KFTCSFRTGYVRCKGVCMPEYYV-NFAEDIINMDVRDD 405
P E L+ S K + +G+ + + + +D
Sbjct: 7 VPAYLGDEDLTQETRALISSLPKEKGWLVSEIYEFQGLWHTQAILQGILICQKRFEAKDS 66
Query: 406 DVWVCSFPKT 415
D+ + + PK+
Sbjct: 67 DIILVTNPKS 76
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 189 bits (481), Expect = 5e-56
Identities = 66/343 (19%), Positives = 113/343 (32%), Gaps = 95/343 (27%)
Query: 38 YVRCKGVCMPEYYV---NFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLDFE 94
++ +G+ P + +RD+DV + ++PK+GT W E++ + + D +
Sbjct: 13 FLWFEGIAFPTMGFRSETLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAK 72
Query: 95 AAKEILPARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLFD 154
+ P E +P +
Sbjct: 73 WIQ-----SVPIWERSPWVES--------------------------------------- 88
Query: 155 YRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNPKD 214
E + + R +HLP +L PK S + AK+IY+ RNP+D
Sbjct: 89 -------------EIGYTALSETESPRLFSSHLPIQLFPKSFFS--SKAKVIYLMRNPRD 133
Query: 215 TCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPD---SFFTPILI 269
VS Y M ++++ + F + D +
Sbjct: 134 VLVSGYFFWKNMKFLKKPKSWEEYFEWFCQGTVLYG---------SWFDHIHGWMPMREE 184
Query: 270 KKFLF------PQDLGSIITQVATHLDKSLTDDQV-----HLSFESMKSNPATNYEFAID 318
K FL QD G I ++ L K+L +++ + SF+SMK N +NY
Sbjct: 185 KNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYSLLSV 244
Query: 319 FNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAEHVSDETE 361
+K + +R G G WK T AE +
Sbjct: 245 DYVVDK--------TQLLRKGVSGDWKNHFTVAQAEDFDKLFQ 279
Score = 140 bits (354), Expect = 8e-38
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V + ++DH+ + ++ N L + YE++K+D G I ++ L K+L ++++++ +
Sbjct: 166 VLYGSWFDHIHGWMP-MREEKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILK 224
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
+ SF+SMK N +NY +K + +R G G WK T E FD
Sbjct: 225 NSSFQSMKENKMSNYSLLSVDYVVDK--------TQLLRKGVSGDWKNHFTVAQAEDFDK 276
Query: 536 WTRTKTKGSDFSF 548
+ K
Sbjct: 277 LFQEKMADLPREL 289
Score = 42.3 bits (100), Expect = 2e-04
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 378 YVRCKGVCMPEYYV---NFAEDIINMDVRDDDVWVCSFPKT 415
++ +G+ P + +RD+DV + ++PK+
Sbjct: 13 FLWFEGIAFPTMGFRSETLRKVRDEFVIRDEDVIILTYPKS 53
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 188 bits (479), Expect = 9e-56
Identities = 79/342 (23%), Positives = 120/342 (35%), Gaps = 81/342 (23%)
Query: 34 FRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLDF 93
R G M + + E I R DD+ + ++PK+GTTW E++ I ND D
Sbjct: 10 LRKDLKLVHGYPMTCAFASNWEKIEQFHSRPDDIVIATYPKSGTTWVSEIIDMILNDGDI 69
Query: 94 EAAKEILP-ARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPL 152
E K + P LE
Sbjct: 70 EKCKRGFITEKVPMLE-------------------------------------------- 85
Query: 153 FDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNP 212
+ P + + ++ R +K HLP LLPK N K+IY+ RN
Sbjct: 86 --------MTLPGLRTSGIEQLEKNPSPRIVKTHLPTDLLPKSFWE--NNCKMIYLARNA 135
Query: 213 KDTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPDSFFTPILIK 270
KD VSYYH + + + G ++++L+ FL + + F +++
Sbjct: 136 KDVSVSYYHFDLMNNLQPFPGTWEEYLEKFLTGKVAYGS------WFTHVKNWWKKKEEH 189
Query: 271 KFLF------PQDLGSIITQVATHLDKSLTDDQV-----HLSFESMKSNPATNYEFAIDF 319
LF ++ I ++ L+K+L D+ + H SFE MK NP NY
Sbjct: 190 PILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVNYTHLPTT 249
Query: 320 NKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAEHVSDETE 361
++ FMR G G WK T E E
Sbjct: 250 VMDHS-------KSPFMRKGTAGDWKNYFTVAQNEKFDAIYE 284
Score = 138 bits (350), Expect = 3e-37
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V + ++ HV +W K+ +LF+ YEDMK++ I ++ L+K+L D+ +D +
Sbjct: 170 VAYGSWFTHVKNWWK-KKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIH 228
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
H SFE MK NP NY ++ FMR G G WK T E+FD
Sbjct: 229 HTSFEVMKDNPLVNYTHLPTTVMDHS-------KSPFMRKGTAGDWKNYFTVAQNEKFDA 281
Query: 536 WTRTKTKGSDFSF 548
T+ + F
Sbjct: 282 IYETEMSKTALQF 294
Score = 44.4 bits (105), Expect = 5e-05
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 374 FRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKT 415
R G M + + E I R DD+ + ++PK+
Sbjct: 10 LRKDLKLVHGYPMTCAFASNWEKIEQFHSRPDDIVIATYPKS 51
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 188 bits (478), Expect = 1e-55
Identities = 75/350 (21%), Positives = 124/350 (35%), Gaps = 96/350 (27%)
Query: 33 SFRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLD 92
+ + +GV M + + + ED+ R DD+ + ++PK+GTTW E+V+ I + D
Sbjct: 9 EYYEVFGEFRGVLMDKRFTKYWEDVEMFLARPDDLVIATYPKSGTTWISEVVYMIYKEGD 68
Query: 93 FEAAKEILP-ARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTP 151
E KE R P+LE L
Sbjct: 69 VEKCKEDAIFNRIPYLECRNEDLINGIKQLK----------------------------- 99
Query: 152 LFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRN 211
+ R +K HLP KLLP N K+IY+ RN
Sbjct: 100 ------------------------EKESPRIVKTHLPPKLLPASFW--EKNCKMIYLCRN 133
Query: 212 PKDTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPDSFFTPIL- 268
KD VSYY+ ++ F +F++ F+ + S++ +
Sbjct: 134 AKDVAVSYYYFLLMITSYPNPKSFSEFVEKFMQGQVPYG-------------SWYDHVKA 180
Query: 269 ------IKKFLF------PQDLGSIITQVATHLDKSLTDDQV-----HLSFESMKSNPAT 311
+ LF +D+ + ++ L++ + + V H SF+ MK+NP+T
Sbjct: 181 WWEKSKNSRVLFMFYEDMKEDIRREVVKLIEFLERKPSAELVDRIIQHTSFQEMKNNPST 240
Query: 312 NYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAEHVSDETE 361
NY + K FMR G +G WK + E + +
Sbjct: 241 NYTMMPEEMMNQK-------VSPFMRKGIIGDWKNHFPEALRERFDEHYK 283
Score = 140 bits (354), Expect = 7e-38
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V + ++DHV +W K VLF+ YEDMK+D+ + ++ L++ + + VD + Q
Sbjct: 169 VPYGSWYDHVKAWWE-KSKNSRVLFMFYEDMKEDIRREVVKLIEFLERKPSAELVDRIIQ 227
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
H SF+ MK+NP+TNY + K FMR G +G WK + E+FD
Sbjct: 228 HTSFQEMKNNPSTNYTMMPEEMMNQK-------VSPFMRKGIIGDWKNHFPEALRERFDE 280
Query: 536 WTRTKTKGSDFSF 548
+ + K F
Sbjct: 281 HYKQQMKDCTVKF 293
Score = 45.6 bits (108), Expect = 2e-05
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 373 SFRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKT 415
+ + +GV M + + + ED+ R DD+ + ++PK+
Sbjct: 9 EYYEVFGEFRGVLMDKRFTKYWEDVEMFLARPDDLVIATYPKS 51
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 187 bits (476), Expect = 3e-55
Identities = 85/354 (24%), Positives = 124/354 (35%), Gaps = 96/354 (27%)
Query: 29 KFTCSFRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIA 88
F + R KG+ P + + I N + DD+ + ++PK GTTWTQE+V I
Sbjct: 6 TFDGTKRLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQ 65
Query: 89 NDLDFEAAKEILP-ARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHL 147
N+ D E +K RFPFLE+ A
Sbjct: 66 NEGDVEKSKRAPTHQRFPFLEMKIPSLGSGLEQAHA------------------------ 101
Query: 148 PLTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIY 207
+ R +K HLPF LLP L N KIIY
Sbjct: 102 -----------------------------MPSPRILKTHLPFHLLPPSLLE--KNCKIIY 130
Query: 208 VTRNPKDTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPDSFFT 265
V RNPKD VSYYH + G ++++ + FL + S+
Sbjct: 131 VARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGKVCWG-------------SWHE 177
Query: 266 PIL-------IKKFLFP------QDLGSIITQVATHLDKSLTDDQV-----HLSFESMKS 307
+ + L+ ++ I ++A + K L D + + SF+ MK
Sbjct: 178 HVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQ 237
Query: 308 NPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAEHVSDETE 361
NP NY ++ FMR G VG WK T E ++ +
Sbjct: 238 NPMANYSSIPAEIMDHS-------ISPFMRKGAVGDWKKHFTVAQNERFDEDYK 284
Score = 142 bits (359), Expect = 1e-38
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
VC+ + +HV +W AK + +L++ YEDMKK+ I ++A + K L D +D +
Sbjct: 170 VCWGSWHEHVKGWWE-AKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVH 228
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
+ SF+ MK NP NY ++ FMR G VG WK T E+FD
Sbjct: 229 YTSFDVMKQNPMANYSSIPAEIMDHS-------ISPFMRKGAVGDWKKHFTVAQNERFDE 281
Query: 536 WTRTKTKGSDFSF 548
+ K + +F
Sbjct: 282 DYKKKMTDTRLTF 294
Score = 45.6 bits (108), Expect = 2e-05
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 369 KFTCSFRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKT 415
F + R KG+ P + + I N + DD+ + ++PK
Sbjct: 6 TFDGTKRLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKA 52
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 186 bits (475), Expect = 3e-55
Identities = 72/334 (21%), Positives = 114/334 (34%), Gaps = 82/334 (24%)
Query: 35 RTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLDFE 94
+ +G + V+ I + + + DD+ +C++PK GTTW QE+V I + D E
Sbjct: 10 QIKLKEVEGTLLQPATVDNWSQIQSFEAKPDDLLICTYPKAGTTWIQEIVDMIEQNGDVE 69
Query: 95 AAKE-ILPARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLF 153
+ I+ R PF+E
Sbjct: 70 KCQRAIIQHRHPFIEWARPPQ--------------------------------------- 90
Query: 154 DYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNPK 213
+ V + + R +K HL +LLP N K +YV RN K
Sbjct: 91 --------------PSGVEKAKAMPSPRILKTHLSTQLLPPSFWE--NNCKFLYVARNAK 134
Query: 214 DTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPDSFFTPILIKK 271
D VSYYH + G ++++ + F+N + + + ++ +
Sbjct: 135 DCMVSYYHFQRMNHMLPDPGTWEEYFETFINGKVVWGSWFDHVK------GWWEMKDRHQ 188
Query: 272 FLFP------QDLGSIITQVATHLDKSLTDDQV-----HLSFESMKSNPATNYEFAIDFN 320
LF +D I +V + K + + + SFE MK NP TN
Sbjct: 189 ILFLFYEDIKRDPKHEIRKVMQFMGKKVDETVLDKIVQETSFEKMKENPMTNRSTVSKSI 248
Query: 321 KENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAE 354
+ FMR G VG WK T E
Sbjct: 249 LDQS-------ISSFMRKGTVGDWKNHFTVAQNE 275
Score = 141 bits (358), Expect = 2e-38
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V + ++DHV +W K R +LF+ YED+K+D I +V + K + + +D + Q
Sbjct: 168 VVWGSWFDHVKGWWE-MKDRHQILFLFYEDIKRDPKHEIRKVMQFMGKKVDETVLDKIVQ 226
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
SFE MK NP TN + FMR G VG WK T E+FD
Sbjct: 227 ETSFEKMKENPMTNRSTVSKSILDQS-------ISSFMRKGTVGDWKNHFTVAQNERFDE 279
Query: 536 WTRTKTKGSDFSF 548
R K +G+ +F
Sbjct: 280 IYRRKMEGTSINF 292
Score = 42.0 bits (99), Expect = 3e-04
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 375 RTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKT 415
+ +G + V+ I + + + DD+ +C++PK
Sbjct: 10 QIKLKEVEGTLLQPATVDNWSQIQSFEAKPDDLLICTYPKA 50
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 184 bits (468), Expect = 5e-54
Identities = 77/331 (23%), Positives = 120/331 (36%), Gaps = 81/331 (24%)
Query: 38 YVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLDFEAAK 97
+ GV + E + N + DD+ + ++PK+GTTW E++ I ND D E K
Sbjct: 21 IMEVDGVPTLILSKEWWEKVANFQAKPDDLILATYPKSGTTWMHEILDMILNDGDVEKCK 80
Query: 98 EILP-ARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLFDYR 156
R FLEL P+ + PD E
Sbjct: 81 RAQTLDRHAFLEL-------KFPHKEKPDLEF---------------------------- 105
Query: 157 NNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNPKDTC 216
+ + + IK HLP L+P + N KI+YV RNPKD
Sbjct: 106 -----------------VLEMSSPQLIKTHLPSHLIPPSIWK--ENCKIVYVARNPKDCL 146
Query: 217 VSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPDSFFTPILIKKFLF 274
VSYYH + + ++F + F++ F ++ + + L+
Sbjct: 147 VSYYHFHRMASFMPDPQNLEEFYEKFMSGKVVGG------SWFDHVKGWWAAKDMHRILY 200
Query: 275 P------QDLGSIITQVATHLDKSLTDDQV-----HLSFESMKSNPATNYEFAIDFNKEN 323
+D I ++ L+K ++++ + H SF+ MK NP TNY ++
Sbjct: 201 LFYEDIKKDPKREIEKILKFLEKDISEEILNKIIYHTSFDVMKQNPMTNYTTLPTSIMDH 260
Query: 324 KLIDDKFCAGKFMRSGQVGGWKAVMTPEIAE 354
FMR G G WK T E
Sbjct: 261 S-------ISPFMRKGMPGDWKNYFTVAQNE 284
Score = 139 bits (353), Expect = 1e-37
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V ++DHV +WA AK +L++ YED+KKD I ++ L+K ++++ ++ +
Sbjct: 177 VVGGSWFDHVKGWWA-AKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKIIY 235
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
H SF+ MK NP TNY ++ FMR G G WK T E+FD
Sbjct: 236 HTSFDVMKQNPMTNYTTLPTSIMDHS-------ISPFMRKGMPGDWKNYFTVAQNEEFDK 288
Query: 536 WTRTKTKGSDFSF 548
+ K GS +F
Sbjct: 289 DYQKKMAGSTLTF 301
Score = 39.4 bits (92), Expect = 0.002
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 378 YVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKT 415
+ GV + E + N + DD+ + ++PK+
Sbjct: 21 IMEVDGVPTLILSKEWWEKVANFQAKPDDLILATYPKS 58
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 181 bits (462), Expect = 2e-53
Identities = 78/353 (22%), Positives = 119/353 (33%), Gaps = 102/353 (28%)
Query: 33 SFRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLD 92
+ R KGV + +Y+ + + R DD+ + ++PK+GTTW +++ I D
Sbjct: 7 TSRPPLEYVKGVPLIKYFAEALGPLQSFQARPDDLLISTYPKSGTTWVSQILDMIYQGGD 66
Query: 93 FEAAKEI-LPARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTP 151
E + R PFLE L
Sbjct: 67 LEKCHRAPIFMRVPFLEFKAPGIPSGMETLK----------------------------- 97
Query: 152 LFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRN 211
+ R +K HLP LLP+ L K++YV RN
Sbjct: 98 ------------------------DTPAPRLLKTHLPLALLPQTLLD--QKVKVVYVARN 131
Query: 212 PKDTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPDSFFT---- 265
KD VSYYH H+ G +D FL+ F+ ++ S++
Sbjct: 132 AKDVAVSYYHFYHMAKVHPEPGTWDSFLEKFMVGEVSYG-------------SWYQHVQE 178
Query: 266 --------PILIKKFLFP----QDLGSIITQVATHLDKSLTDDQV-----HLSFESMKSN 308
P+L +LF ++ I ++ + SL ++ V H SF+ MK N
Sbjct: 179 WWELSRTHPVL---YLFYEDMKENPKREIQKILEFVGHSLPEETVDFMVQHTSFKEMKKN 235
Query: 309 PATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAEHVSDETE 361
P TNY ++ FMR G G WK T E +
Sbjct: 236 PMTNYTTVPQEFMDHS-------ISPFMRKGMAGDWKTTFTVAQNERFDADYA 281
Score = 138 bits (350), Expect = 2e-37
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 414 KTVCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDIL 473
V + ++ HV E+W + VL++ YEDMK++ I ++ + SL ++ VD +
Sbjct: 165 GEVSYGSWYQHVQEWWE-LSRTHPVLYLFYEDMKENPKREIQKILEFVGHSLPEETVDFM 223
Query: 474 KQHLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQF 533
QH SF+ MK NP TNY ++ FMR G G WK T E+F
Sbjct: 224 VQHTSFKEMKKNPMTNYTTVPQEFMDHS-------ISPFMRKGMAGDWKTTFTVAQNERF 276
Query: 534 DPWTRTKTKGSDFSF 548
D K G SF
Sbjct: 277 DADYAEKMAGCSLSF 291
Score = 43.3 bits (102), Expect = 1e-04
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 373 SFRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKT 415
+ R KGV + +Y+ + + R DD+ + ++PK+
Sbjct: 7 TSRPPLEYVKGVPLIKYFAEALGPLQSFQARPDDLLISTYPKS 49
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 176 bits (448), Expect = 2e-51
Identities = 75/339 (22%), Positives = 124/339 (36%), Gaps = 94/339 (27%)
Query: 34 FRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLDF 93
F + Y GV +P + E+I N VR DVW+ ++PK+GT+ QE+V+ ++ D
Sbjct: 15 FESKYFEFHGVRLPPFCRGKMEEIANFPVRPSDVWIVTYPKSGTSLLQEVVYLVSQGADP 74
Query: 94 EAAKEILP-ARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPL 152
+ + + P LE + + + I+ L R IK +
Sbjct: 75 DEIGLMNIDEQLPVLE-----------------YPQPGLDIIKELTSPRLIK-----S-- 110
Query: 153 FDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNP 212
HLP++ LP L +G ++K+IY+ RNP
Sbjct: 111 ---------------------------------HLPYRFLPSDLHNG--DSKVIYMARNP 135
Query: 213 KDTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPDSFFTPILIK 270
KD VSYY + YRG F +F + F+ND + + + F+ +
Sbjct: 136 KDLVVSYYQFHRSLRTMSYRGTFQEFCRRFMNDKLGYGSWFEHVQ------EFWEHRMDS 189
Query: 271 KFLF------PQDLGSIITQVATHLDKSLTDDQVH--LSFESMKSNPATNYEFAIDFNKE 322
LF +DL +++ Q+A L S Q+ + N E
Sbjct: 190 NVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLEALTEHCHQLVDQCCNAE-------- 241
Query: 323 NKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAEHVSDETE 361
+ G+VG WK + T + E +
Sbjct: 242 ----------ALPVGRGRVGLWKDIFTVSMNEKFDLVYK 270
Score = 126 bits (319), Expect = 5e-33
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
+ + +++HV EFW + NVLF+KYEDM +DL +++ Q+A L S Q++ L +
Sbjct: 170 LGYGSWFEHVQEFWE-HRMDSNVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLEALTE 228
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
H + N E + G+VG WK + T + E+FD
Sbjct: 229 HC---HQLVDQCCNAE------------------ALPVGRGRVGLWKDIFTVSMNEKFDL 267
Query: 536 WTRTKTKGSDFSF 548
+ K D +F
Sbjct: 268 VYKQKMGKCDLTF 280
Score = 41.7 bits (98), Expect = 4e-04
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 374 FRTGYVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKT 415
F + Y GV +P + E+I N VR DVW+ ++PK+
Sbjct: 15 FESKYFEFHGVRLPPFCRGKMEEIANFPVRPSDVWIVTYPKS 56
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 171 bits (436), Expect = 6e-49
Identities = 76/360 (21%), Positives = 115/360 (31%), Gaps = 97/360 (26%)
Query: 22 IGKLLRSKFTCSFRTGYVRCKGVCMPEYYVNFAEDIINM----DVRDDDVWVCSFPKTGT 77
+ + Y R KGV P + E I DVRDDD+++ ++PK+GT
Sbjct: 1 MASPPPFH-SQKLPGEYFRYKGVPFPVGLYS-LESISLAENTQDVRDDDIFIITYPKSGT 58
Query: 78 TWTQEMVWCIANDLDFEAAKEILPARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNL 137
TW E++ I + D + P E P +
Sbjct: 59 TWMIEIICLILKEGDPSWIR-----SVPIWERAPWCETIVGAF----------------- 96
Query: 138 KGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQ 197
+ + R + +HLP ++ K
Sbjct: 97 -----------------------------------SLPDQYSPRLMSSHLPIQIFTKAFF 121
Query: 198 SGTTNAKIIYVTRNPKDTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALAR 255
S AK+IY+ RNP+D VS YH+ + G D FL+ FL F
Sbjct: 122 SS--KAKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQFLRDFLKGEVQFG------- 172
Query: 256 LFPQPD---SFFTPILIKKFLF------PQDLGSIITQVATHLDKSLTDDQV-----HLS 301
D + FLF QDL + ++ L + L + + H +
Sbjct: 173 --SWFDHIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSVVAHST 230
Query: 302 FESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAEHVSDETE 361
F +MK+N +NY G F+R G G WK T +E
Sbjct: 231 FSAMKANTMSNYT-------LLPPSLLDHRRGAFLRKGVCGDWKNHFTVAQSEAFDRAYR 283
Score = 132 bits (334), Expect = 1e-34
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V F ++DH+ + K +DN LFI YE++++DL + ++ L + L + + +
Sbjct: 169 VQFGSWFDHIKGWLR-MKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSVVA 227
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
H +F +MK+N +NY G F+R G G WK T E FD
Sbjct: 228 HSTFSAMKANTMSNYT-------LLPPSLLDHRRGAFLRKGVCGDWKNHFTVAQSEAFDR 280
Query: 536 WTRTKTKGSD 545
R + +G
Sbjct: 281 AYRKQMRGMP 290
Score = 33.3 bits (76), Expect = 0.16
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 362 IGKLLRSKFTCSFRTGYVRCKGVCMPEYYVNFAEDIINM----DVRDDDVWVCSFPKTVC 417
+ + Y R KGV P + E I DVRDDD+++ ++PK+
Sbjct: 1 MASPPPFH-SQKLPGEYFRYKGVPFPVGLYS-LESISLAENTQDVRDDDIFIITYPKSGT 58
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform
B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A
{Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 170 bits (432), Expect = 7e-49
Identities = 74/348 (21%), Positives = 115/348 (33%), Gaps = 94/348 (27%)
Query: 33 SFRTGYVRCKGVCMPEYYV---NFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIAN 89
Y R KGV P + + DVRDDD+++ ++PK+GTTW E++ I
Sbjct: 13 KLPGEYFRYKGVPFPVGLYSLESISLAENTQDVRDDDIFIITYPKSGTTWMIEIICLILK 72
Query: 90 DLDFEAAKEILPARFPFLELTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPL 149
+ D + P E P +
Sbjct: 73 EGDPSWIR-----SVPIWERAPWCETIVGAF----------------------------- 98
Query: 150 TPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVT 209
+ + R + +HLP ++ K S AK+IY+
Sbjct: 99 -----------------------SLPDQYSPRLMSSHLPIQIFTKAFFSS--KAKVIYMG 133
Query: 210 RNPKDTCVSYYHHCHLM--EGYRGDFDDFLKLFLNDAGNFSARLALARLFPQPD---SFF 264
RNP+D VS YH+ + G D FL+ FL F D +
Sbjct: 134 RNPRDVVVSLYHYSKIAGQLKDPGTPDQFLRDFLKGEVQFG---------SWFDHIKGWL 184
Query: 265 TPILIKKFLF------PQDLGSIITQVATHLDKSLTDDQV-----HLSFESMKSNPATNY 313
FLF QDL + ++ L + L + + H +F +MK+N +NY
Sbjct: 185 RMKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSVVAHSTFSAMKANTMSNY 244
Query: 314 EFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIAEHVSDETE 361
+++ G F+R G G WK T +E
Sbjct: 245 TLLPPSLLDHR-------RGAFLRKGVCGDWKNHFTVAQSEAFDRAYR 285
Score = 132 bits (334), Expect = 6e-35
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 416 VCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V F ++DH+ + K +DN LFI YE++++DL + ++ L + L + + +
Sbjct: 171 VQFGSWFDHIKGWLR-MKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSVVA 229
Query: 476 HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDP 535
H +F +MK+N +NY +++ G F+R G G WK T E FD
Sbjct: 230 HSTFSAMKANTMSNYTLLPPSLLDHR-------RGAFLRKGVCGDWKNHFTVAQSEAFDR 282
Query: 536 WTRTKTKGSD 545
R + +G
Sbjct: 283 AYRKQMRGMP 292
Score = 33.6 bits (77), Expect = 0.13
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 373 SFRTGYVRCKGVCMPEYYV---NFAEDIINMDVRDDDVWVCSFPKTVC 417
Y R KGV P + + DVRDDD+++ ++PK+
Sbjct: 13 KLPGEYFRYKGVPFPVGLYSLESISLAENTQDVRDDDIFIITYPKSGT 60
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 165 bits (420), Expect = 5e-47
Identities = 40/317 (12%), Positives = 72/317 (22%), Gaps = 91/317 (28%)
Query: 59 NMDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEILPARFPFLELTPLFDYRNN 118
+ W+ S+PK G TW + M+ + LT
Sbjct: 31 GRGSMNGIRWIASYPKAGNTWVRCMLAAYITGKAPQVWN-----DIDAESLTL------- 78
Query: 119 PNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQNLK 178
+
Sbjct: 79 ---------------------------------------------EAMLRFGDLPPAEPM 93
Query: 179 GRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNPKDTCVSYYHHCHLMEGYRGDFDDFLK 238
+K HL + L G AK++Y+ RNP+D +S + DF +
Sbjct: 94 EPVLVKTHLKADVPVLGL-YGEATAKVLYLVRNPRDMLLSSMRMASISRDDVEKSRDFAR 152
Query: 239 LFLNDAGNFSARLALARLFPQPDSFF-----------TPILIKKFLF------PQDLGSI 281
F+ + G L S+ L D +
Sbjct: 153 KFIANEGLGWNALGAGGGVGLG-SWPENVRSWTESSSDRFPNADVLTMRYEDLKGDPVAR 211
Query: 282 ITQVATHLD--KSLTDDQV-----HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGK 334
+++ LD + + + + E M+ + + +
Sbjct: 212 FSEIVEFLDLGGPVDIEDIRRAVAASTLERMRELEKRSEQQGGGSPIRHG--------DA 263
Query: 335 FMRSGQVGGWKAVMTPE 351
M G GG + E
Sbjct: 264 RMMKGGPGGARPQFVGE 280
Score = 120 bits (303), Expect = 1e-30
Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 25/172 (14%)
Query: 392 NFAEDIINMDVRDDDVWVCSFPKTVCFAPYWDHVLEFWAVAKKR---DNVLFIKYEDMKK 448
+FA I + + V + ++V + + R +VL ++YED+K
Sbjct: 149 DFARKFIANEGLGWNALGAG--GGVGLGSWPENVRSWTESSSDRFPNADVLTMRYEDLKG 206
Query: 449 DLGSIITQVATHLD--KSLTDDQVDILKQHLSFESMKSNPATNYEFAIDFNKENKLIDDK 506
D + +++ LD + + + + E M+ + + +
Sbjct: 207 DPVARFSEIVEFLDLGGPVDIEDIRRAVAASTLERMRELEKRSEQQGGGSPIRHG----- 261
Query: 507 FCAGKFMRSGQVGGWKAVMTPE---------IVEQFDPWTRTKTKG-SDFSF 548
M G GG + E + E + + G S F+
Sbjct: 262 ---DARMMKGGPGGARPQFVGEGRYDQSLSFLGEDIESDYQELLHGDSGFAL 310
Score = 32.8 bits (75), Expect = 0.24
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 399 NMDVRDDDVWVCSFPKT 415
+ W+ S+PK
Sbjct: 31 GRGSMNGIRWIASYPKA 47
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 160 bits (407), Expect = 2e-45
Identities = 38/319 (11%), Positives = 73/319 (22%), Gaps = 89/319 (27%)
Query: 59 NMDVRDDD--VWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEILPARFPFLELTPLFDYR 116
+ R W+ S+PK G W + M+ E I A P LE
Sbjct: 13 GLVPRGSHMMCWIASYPKAGGHWLRCMLTSYVTGEPVETWPGIQ-AGVPHLEGLLRDGEA 71
Query: 117 NNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQN 176
+ + D + T
Sbjct: 72 PSADPDEQ----------------VLLA-----T-------------------------- 84
Query: 177 LKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNPKDTCVSYYHHCHLMEGYRGDFDDF 236
H + + AK++ + RNP+D +S +
Sbjct: 85 ---------HFTADRPVLRFYR-ESTAKVVCLIRNPRDAMLSLMRMKGIPPEDVEACRKI 134
Query: 237 LKLFLNDAGNFSARLALARLFPQPDSFFT-----------PILIKKFLF------PQDLG 279
+ F+ + + + S+ L +D
Sbjct: 135 AETFIA--DEGFSSVRIWAGEG---SWPENIRSWTDSVHESFPNAAVLAVRYEDLRKDPE 189
Query: 280 SIITQVATHLDKSLTDDQV----HLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKF 335
+ +V L+ D + + E M+ + + L+ F
Sbjct: 190 GELWKVVDFLELGGRDGVADAVANCTLERMREMEERSKL---LGLETTGLMTRGGKQLPF 246
Query: 336 MRSGQVGGWKAVMTPEIAE 354
+ G M +I +
Sbjct: 247 VGKGGQRKSLKFMGDDIEK 265
Score = 117 bits (295), Expect = 9e-30
Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 7/146 (4%)
Query: 405 DDVWVCSFPKTVCFAPYWDHVLEFWAVAKKR---DNVLFIKYEDMKKDLGSIITQVATHL 461
D S + +++ + + VL ++YED++KD + +V L
Sbjct: 140 ADEGFSSVRIWAGEGSWPENIRSWTDSVHESFPNAAVLAVRYEDLRKDPEGELWKVVDFL 199
Query: 462 DKSLTDDQVDILKQHLSFESMKSNPATNYEFAIDFNKENKLIDDKFCAGKFMRSGQVGGW 521
+ D D + + + E M+ + + L+ F+ G
Sbjct: 200 ELGGRDGVADAVA-NCTLERMREMEERSKL---LGLETTGLMTRGGKQLPFVGKGGQRKS 255
Query: 522 KAVMTPEIVEQFDPWTRTKTKGSDFS 547
M +I + + +T + ++
Sbjct: 256 LKFMGDDIEKAYADLLHGETDFAHYA 281
Score = 28.1 bits (63), Expect = 7.6
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 2/19 (10%)
Query: 399 NMDVRDDD--VWVCSFPKT 415
+ R W+ S+PK
Sbjct: 13 GLVPRGSHMMCWIASYPKA 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 74/530 (13%), Positives = 144/530 (27%), Gaps = 175/530 (33%)
Query: 47 PEYYVNFAEDIIN-----MDVRDDD-VWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEIL 100
+Y V+ + + +++R V + +G TW + + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQC----- 178
Query: 101 PARFPF----------------LELTPLFDYRNNPNLDA-PDFEENSVVHIQNLKGRRFI 143
+ F LE+ Y+ +PN + D N + I +++
Sbjct: 179 --KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--- 233
Query: 144 KAHLPLTPLFDYRNNPN----LDAPDFEENSVVHIQNLKGRRFIKAHLPFKLLPKKLQSG 199
L L + N L ++QN + A F L
Sbjct: 234 -----LRRLLKSKPYENCLLVLL----------NVQN---AKAWNA---FNL-------- 264
Query: 200 TTNAKIIYVTRNPKDT-CVSYYHHCHL-MEGYRGDF--DDFLKLFLNDAGNFSARLALAR 255
+ KI+ TR + T +S H+ ++ + D+ L L L
Sbjct: 265 --SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---- 318
Query: 256 LFPQPDSFFTPILIKKFLFPQDLGSIITQVATHLD-----KSLTDDQVHLSFE-SMKS-N 308
P + P+ L I + L K + D++ E S+
Sbjct: 319 ----------PREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 309 PA---TNYE-FAIDFNKENKL--------------IDDKFCAGKFMRSGQVGGWKAVMTP 350
PA ++ ++ F + D K + V T
Sbjct: 368 PAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 351 EI-------AEHVSDETEIGKLLRSKFTCSFRTGYVRCKGVCMPE----YYVNFAEDI-- 397
I + +E + + + + + + +P Y+ + I
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHY--NIPKTF--DSDDLIPPYLDQYFYSH---IGH 479
Query: 398 ----INMDVRDDDVWVCSFPKTVCFAPYWD---------HVLEFWAVAKKRDNVL----- 439
I R F + D H W + N L
Sbjct: 480 HLKNIEHPERMT-----LFRMV-----FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 440 ---FI-----KYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQHLSFES 481
+I KYE + + + ++ +L + D+L+ L E
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENL---ICSKYTDLLRIALMAED 576
Score = 36.4 bits (83), Expect = 0.031
Identities = 45/339 (13%), Positives = 91/339 (26%), Gaps = 90/339 (26%)
Query: 220 YHHCHLMEGYRGDFD----DFLKLFLNDAGNFSARLALARLFPQPDSFFTPILIKKFLFP 275
+HH H M+ G+ D L +F + F + P S + I +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHII-- 55
Query: 276 QDLGSIITQVATHLDKSLTDDQVHLSFESMKSNPATNYEFAID-FNKENK---LIDDKF- 330
++ +L Q + + ++ NY+F + E + ++ +
Sbjct: 56 -MSKDAVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 331 -CAGKFMRSGQVGGWKAVMTPEIAEHVSDETEIGKL------LRSKFTCSFRTGYVRCKG 383
+ QV +VS KL LR V G
Sbjct: 114 EQRDRLYNDNQV------FAKY---NVSRLQPYLKLRQALLELRP-------AKNVLIDG 157
Query: 384 VCMPEYYVNFAEDIINMDV-RDDDVWVCSFPKTVCFAPYWDHVLEFWAVAKKRDNVLFIK 442
+ + + +DV V C + FW L +K
Sbjct: 158 --VL----GSGKTWVALDVCLSYKV-QCKMDFKI-----------FW---------LNLK 190
Query: 443 YEDMKKDLGSIITQVATHLDKSLTDDQVDILKQHLSFESMKSNPATNYEFAIDFNKENKL 502
+ + + ++ ++ +D + T L S+++ EN L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENCL 247
Query: 503 I--DDKFCAGKFMRSGQVGGWKAVMTPEIVEQFDPWTRT 539
+ + V + F+ +
Sbjct: 248 LVLLN------------------VQNAKAWNAFNLSCKI 268
Score = 30.6 bits (68), Expect = 1.8
Identities = 39/341 (11%), Positives = 88/341 (25%), Gaps = 124/341 (36%)
Query: 214 DTCVSYYHHC------HLMEGYRGDFD-----DFLKLFLNDA------GNFSARLALARL 256
D + + + + +FD D K L+ + A RL
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 257 F----PQPDSFFTPILIKKFL---FPQDLGSIITQVATH-LDKSLTDDQVHLSFESMKSN 308
F + + +++KF+ + +++ + T S+ + +
Sbjct: 68 FWTLLSKQEE-----MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR----MYIEQRDR 118
Query: 309 PATNYEFAIDFN-----KENKLIDDKFCAGKFMRS-------GQVGGWKAVMTPE----- 351
+ + +N KL A +R G +G K + +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQ----ALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 352 --------------IAEHVSDETEIGKL--LRSKFTCSFRTGYVRCKGVCMPEYYVNFAE 395
+ S ET + L L + ++ + R + ++ +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS---RSDHSSNIKLRIHSIQ 231
Query: 396 DIINMDVRD----------DDVWVCSFPKTVCFAPYWDHVLEFWAVAKKRDNVLFIKYED 445
+ ++ +V K W+ F
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQN---AKA------WNA---------------F----- 262
Query: 446 MKKDLGS---IITQVATHLDKSLTDDQVDILKQHLSFESMK 483
+L + T+ K +TD H+S +
Sbjct: 263 ---NLSCKILLTTR-----FKQVTDFLSAATTTHISLDHHS 295
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-04
Identities = 50/301 (16%), Positives = 80/301 (26%), Gaps = 113/301 (37%)
Query: 101 PARFPFLELTPLFDYRN-------NP-NL------------------------DAPDFEE 128
P P + + L Y P L F
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 129 NSVVHIQNL--KGRRFIKAH----LPLTPLFDYRNN----P------------------- 159
+ I L G R +A+ LP + L D N P
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 160 --NLDAPDFEENSVVHIQNLKGRR-FIKA-------HLPFKLLPKKLQSGTTNAKIIYVT 209
N P V I + G + + + L L K SG ++I +
Sbjct: 355 KTNSHLP---AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 210 RNPKDTC----VS--YYHHCHLMEGYRGDFDDFLKLFLNDAGNFSARLALARL-FPQPDS 262
R K + V+ + H HL+ L D + + P D+
Sbjct: 412 RKLKFSNRFLPVASPF--HSHLLV-------PASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 263 FFTPILIKKFLFPQDLGSIITQVATHLDKSLTD----DQVHLSFESMKSNPATNYEFAID 318
F D GS + ++ + + + D V +E+ AT+ +D
Sbjct: 463 F-------------D-GSDLRVLSGSISERIVDCIIRLPVK--WETTTQFKATH---ILD 503
Query: 319 F 319
F
Sbjct: 504 F 504
Score = 38.5 bits (89), Expect = 0.006
Identities = 55/351 (15%), Positives = 100/351 (28%), Gaps = 121/351 (34%)
Query: 60 MDVRDDDVWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEILPARFPF--LELTPLFDYRN 117
MD+ + A D+ + A + F L++ N
Sbjct: 1633 MDLYK------TSK-------------AAQDV-WNRADNHFKDTYGFSILDIV-----IN 1667
Query: 118 NPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQNL 177
NP N +H KG+R I+ N A FE +
Sbjct: 1668 NPV--------NLTIHFGGEKGKR-IRE--------------NYSAMIFE-------TIV 1697
Query: 178 KGRRFIKAHLPFKLLPKKLQSGTTN--AKIIYVTRN--PKDTCVSYYHHCHLMEGYRGDF 233
G+ +K FK + + S T ++ T+ P T + L +G
Sbjct: 1698 DGK--LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS--KGLI 1753
Query: 234 DDFLKLFLNDAGN----FSARLALARLFPQPDSFFTPILIK---------KFLFPQD--- 277
F AG+ ++A +LA + L++ + P+D
Sbjct: 1754 PAD-ATF---AGHSLGEYAALASLADVMSIES------LVEVVFYRGMTMQVAVPRDELG 1803
Query: 278 --LGSIITQVATHLDKSLTDDQVHLSFESMKSN------PATNYEFAIDFNKENKLIDDK 329
+I + S + + + E + NY N EN+
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-NY------NVENQQY--- 1853
Query: 330 FCAGKFMRSGQVGGWKAVMTPEIAEHVSDETEIGKLLRSKFTCSFRTGYVR 380
AG +A+ + +V + ++ K+ + S V
Sbjct: 1854 VAAGDL---------RAL---DTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 30.0 bits (67), Expect = 2.3
Identities = 19/128 (14%), Positives = 51/128 (39%), Gaps = 34/128 (26%)
Query: 86 CIANDLDFEAAKEILPAR-------FPFLELTPLFDYR---NNPNLDAPDFEENSVVHIQ 135
+A+ + E+ E++ R P EL +Y NP A F + ++ ++
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS-NYGMIAINPGRVAASFSQEALQYVV 1830
Query: 136 ----------------NLKGRRFIKA-HLP----LTPLFDYRNNPNLDAPDFEENSVVHI 174
N++ ++++ A L +T + ++ +D + +++ + +
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS--LSL 1888
Query: 175 QNLKGRRF 182
+ ++G F
Sbjct: 1889 EEVEGHLF 1896
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
3ap3_A*
Length = 337
Score = 38.7 bits (90), Expect = 0.004
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 13/41 (31%)
Query: 182 FIKAHLPFKLLPKKLQSGTTNAKIIYVTRNPKDTCVSYYHH 222
++ P N+K + + R+ + + S
Sbjct: 146 YLSRLFP-------------NSKFLLMVRDGRASVHSMITR 173
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP,
haparin sulfate, haparin sulfate biosynthesis,
glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP:
c.37.1.5
Length = 325
Score = 38.3 bits (88), Expect = 0.005
Identities = 35/256 (13%), Positives = 67/256 (26%), Gaps = 68/256 (26%)
Query: 66 DVWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEILPARFPFLELTPLFDYRNNPNLDAPD 125
+ + KTGTT + +P+L +
Sbjct: 49 KLLIIGPQKTGTTALYLFL-------------------------------GMHPDLSSNY 77
Query: 126 FEENSVVHIQNLKGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKA 185
+ IQ G + K F +N D E S + + R A
Sbjct: 78 PSSETFEEIQFFNGHNYHKGIDWYMEFFPIPSNTTSDFYF--EKSANYFDSEVAPRRAAA 135
Query: 186 HLPFKLLPKKLQSGTTNAKIIYVTRNPKDTCVSYYHHCHLMEGYRGDFDDFLKLFLNDAG 245
LP AK++ + NP D S+Y H +
Sbjct: 136 LLP-------------KAKVLTILINPADRAYSWYQH-QRAHDDPVALKYTFHEVITAGS 181
Query: 246 NFSARLALARLFPQPDSFFTPILIK-KFLFPQDLGSIITQVATHLDKSLTDDQVH-LSFE 303
+ S++L + ++ + + + +Q+ L +
Sbjct: 182 DASSKLRALQNRCLVPGWYATHIERWLSAYH-------------------ANQILVLDGK 222
Query: 304 SMKSNPATNYEFAIDF 319
+++ PA + F
Sbjct: 223 LLRTEPAKVMDMVQKF 238
Score = 36.4 bits (83), Expect = 0.017
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 378 YVRCKGVCMPEYYVNFAEDIINMDVRDDDVWVCSFPKTVCFAPYWDHVLEFWAVAKKRDN 437
+ R + Y ++I + + Y H +E W A +
Sbjct: 159 HQRAHDDPVALKY--TFHEVITAGSDASSKLRALQNRCLVPGWYATH-IERWLSAYHANQ 215
Query: 438 VLFIKYEDMKKDLGSIITQVATHLD 462
+L + + ++ + ++ V L
Sbjct: 216 ILVLDGKLLRTEPAKVMDMVQKFLG 240
>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown
function; HET: PLM; 2.60A {Mycobacterium avium}
Length = 414
Score = 37.6 bits (86), Expect = 0.008
Identities = 10/110 (9%), Positives = 31/110 (28%), Gaps = 11/110 (10%)
Query: 408 WVCSFPKTVCFAPYWDHVLEFWAVAKKR----------DNVLFIKYEDMKKDLGSIITQV 457
+ + + + R + + Y +M +D ++ ++
Sbjct: 291 SLVMNTELLDQTEMGRLAMWQMRYHVDRPLRARERIGDERFFHMYYHEMMRDPMDVMRRI 350
Query: 458 ATHLDKSLTDDQVDILKQHLSFESMKSNPATNYEFAIDFNKENKLIDDKF 507
D+ LT + ++ L+ Y ++ + + F
Sbjct: 351 YEWADEPLTAETEARMRNWLAHHPQDRFALNAYRLD-EYGLTVEALQPIF 399
Score = 33.7 bits (76), Expect = 0.16
Identities = 22/194 (11%), Positives = 46/194 (23%), Gaps = 27/194 (13%)
Query: 67 VWVCSFPKTGTTWTQEMVWCIANDLDFEAAKE---ILPARFPFLELTPLF---------D 114
+ V P+TGTT + + D + + P E
Sbjct: 109 LIVLGMPRTGTTVISYL---LDQDPARRSLLHWQCVHPIPPASTETLRTDPRCLALLDEQ 165
Query: 115 YRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLFDYRNNP------NLDAPDFEE 168
+ + FI +D D D
Sbjct: 166 RKILDAVTRAKMPLPHWEDADGPTEDMFIHNQDFKGLSWDSFLPTDRYARWLFDEADMSS 225
Query: 169 NS------VVHIQNLKGRRFIKAHLPFKLLPKKLQSGTTNAKIIYVTRNPKDTCVSYYHH 222
+ +Q+ + + + L +A++I+ R+P S +
Sbjct: 226 TYEYQKRYLQVLQSTAPGSWSLKMPSHSVHIEALLKVFPDARLIWAHRDPYKATGSLCNL 285
Query: 223 CHLMEGYRGDFDDF 236
L + + +
Sbjct: 286 WRLPQSLVMNTELL 299
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 37.5 bits (86), Expect = 0.009
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 4/114 (3%)
Query: 421 YWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQHLSFE 480
Y ++ + R+ V I +E+ +D ++ L S TD D +H
Sbjct: 167 YAAQ-VKRYLDVFGREQVKVILFEEFARDPVQVVRDCCAFLGVS-TDFVPDTSIRHNESG 224
Query: 481 SMKSNPATNY--EFAIDFNKENKLIDDKFCAGKFMRSGQVGGWKAVMTPEIVEQ 532
KS N+ + I R+ + + M P++ E+
Sbjct: 225 VPKSRSLYNFIAKPNALKEIVKPFIPAAVRERLGNRAKSMVLGRMEMEPDLREE 278
Score = 28.6 bits (63), Expect = 5.3
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 23/128 (17%)
Query: 193 PKKLQSGTTNAKIIYVTRNPKDTCVSYYHHCHLMEGYRGDFDDFLKLFLNDAGNFSARLA 252
+++ +AKI+ + RNP D S Y H E F + L
Sbjct: 100 AQRMYDAYPDAKILIMLRNPVDRAFSAYMHLVRDERETLSFRESLAKEEE---------- 149
Query: 253 LARLFPQPDSFFTPILIKKFLFPQDLGSIITQVATHLDKSLTDDQVH-LSFESMKSNPAT 311
+ + + +G QV +QV + FE +P
Sbjct: 150 -----------RIRQHYEPLWYYRAVGLYAAQVK-RYLDVFGREQVKVILFEEFARDPVQ 197
Query: 312 NYEFAIDF 319
F
Sbjct: 198 VVRDCCAF 205
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 32.5 bits (73), Expect = 0.27
Identities = 6/46 (13%), Positives = 16/46 (34%)
Query: 202 NAKIIYVTRNPKDTCVSYYHHCHLMEGYRGDFDDFLKLFLNDAGNF 247
+++ + R+P + +S Y + ++ L G
Sbjct: 101 TIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGRL 146
Score = 31.3 bits (70), Expect = 0.70
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 421 YWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLD 462
Y H + W ++ + + + +D I +V L
Sbjct: 158 YHAH-MLNWLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLK 198
>2hg6_A Hypothetical protein; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Pseudomonas aeruginosa} SCOP:
d.364.1.1
Length = 128
Score = 30.1 bits (67), Expect = 0.68
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 48 EYYVNFAEDIINMDVRDDDVWVCSFPKTGTTWTQEMVWCIAND 90
Y V F+ED MDV DD + S E VW D
Sbjct: 49 RYIVRFSEDSFGMDVADDSITPTS----------EFVWSSVRD 81
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 31.3 bits (70), Expect = 0.71
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 392 NFAEDIINMDVRDDDVWVCSFPKTVCFAPYWDHVLEFWAVAKKRDNVLFIKYEDMKKDLG 451
+ + + V + K V + Y H LE W + + + + +
Sbjct: 139 KTYYKFEKLAIDPNTCEVNTKYKAVRTSIYTKH-LERWLKYFPIEQFHVVDGDRLITEPL 197
Query: 452 SIITQVATHLD 462
+ V L+
Sbjct: 198 PELQLVEKFLN 208
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1;
alpha-beta motif, substrate-binding cleft; HET: A3P CIT;
1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Length = 271
Score = 29.8 bits (66), Expect = 2.0
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 421 YWDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLD 462
Y H LE W +LF+ E + D + +V L
Sbjct: 156 YAKH-LEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLG 196
Score = 28.2 bits (62), Expect = 6.4
Identities = 24/171 (14%), Positives = 41/171 (23%), Gaps = 55/171 (32%)
Query: 66 DVWVCSFPKTGTTWTQEMVWCIANDLDFEAAKEILPARFPFLELTPLFDYRNNPNLDAPD 125
+ K GT E + R +P++ A
Sbjct: 19 QAIIIGVKKGGTRALLEFL-------------------------------RVHPDVRAVG 47
Query: 126 FEENSVVHIQNLKGRRFIKAHLPLTPLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKA 185
E H + + + + L P LD E + + + I A
Sbjct: 48 AE----PHFFDRSYDKGLAWYRDLMP-------RTLDGQITMEKTPSYFVTREAPARISA 96
Query: 186 HLPFKLLPKKLQSGTTNAKIIYVTRNPKDTCVSYYHHCHLMEGYRGDFDDF 236
+ K+I V R+P +S Y F+
Sbjct: 97 MSK-------------DTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESL 134
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann
domain, PLP, cobalamin, 5'-deoxyad radical,
adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
sticklandii} SCOP: c.1.19.4
Length = 516
Score = 29.8 bits (67), Expect = 2.7
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 19 ETEIGKLLRSKFTCSFRTGYVRCKGVCMPEYYVNFAEDIINMDVRD 64
E+GK +R C++ C G+CMPE A + +++ + D
Sbjct: 224 GAEVGKYIR---LCNY------CSGLCMPEIAAMGAIERLDVMLND 260
Score = 29.8 bits (67), Expect = 2.7
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 359 ETEIGKLLRSKFTCSFRTGYVRCKGVCMPEYYVNFAEDIINMDVRD 404
E+GK +R C++ C G+CMPE A + +++ + D
Sbjct: 224 GAEVGKYIR---LCNY------CSGLCMPEIAAMGAIERLDVMLND 260
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 29.2 bits (65), Expect = 4.6
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 19 ETEIGKLLRSKFTCSFRTGYVRCKGVCMPEYYVNFAEDIINMDVRD 64
E E+G+ + S+ GV P+ V FAE+ +N +D
Sbjct: 148 EEEVGRPIN---YHSY------VSGVAGPDIAVMFAEEGVNGAHQD 184
Score = 29.2 bits (65), Expect = 4.6
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 359 ETEIGKLLRSKFTCSFRTGYVRCKGVCMPEYYVNFAEDIINMDVRD 404
E E+G+ + S+ GV P+ V FAE+ +N +D
Sbjct: 148 EEEVGRPIN---YHSY------VSGVAGPDIAVMFAEEGVNGAHQD 184
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 28.2 bits (63), Expect = 9.2
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 5/76 (6%)
Query: 111 PLFDYRNNPNLDAPDFEENSVVHIQNLKGRRFIKAHLPLTPLFDY--RNNP--NLDAPDF 166
D+R+ + S + I H P PLF Y + L P+
Sbjct: 151 CALDFRDGEEVATGYKNMYSTNIFTK-RAIALITNHPPEKPLFLYLALQSVHEPLQVPEE 209
Query: 167 EENSVVHIQNLKGRRF 182
IQ+ +
Sbjct: 210 YLKPYDFIQDKNRHHY 225
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 28.2 bits (63), Expect = 9.3
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 422 WDHVLEFWAVAKKRDNVLFIKYEDMKKDLGSIITQVATHLDKSLTDDQVDILKQ 475
V E K ++ + K L ++ Q L T +D LK
Sbjct: 883 ARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKY 936
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.432
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,740,595
Number of extensions: 534136
Number of successful extensions: 1117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 95
Length of query: 548
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 450
Effective length of database: 3,965,535
Effective search space: 1784490750
Effective search space used: 1784490750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.4 bits)