Query psy10122
Match_columns 330
No_of_seqs 274 out of 2092
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:28:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1584|consensus 100.0 3.7E-41 8.1E-46 308.5 12.6 173 56-239 121-296 (297)
2 PLN02164 sulfotransferase 100.0 3.4E-37 7.3E-42 293.3 13.6 173 56-235 162-342 (346)
3 PF00685 Sulfotransfer_1: Sulf 99.9 9.5E-25 2.1E-29 199.4 8.1 163 57-233 102-267 (267)
4 KOG1584|consensus 99.6 9.9E-17 2.1E-21 147.7 2.6 78 253-330 156-244 (297)
5 PLN02164 sulfotransferase 99.3 1.3E-12 2.8E-17 124.9 2.6 76 252-328 197-290 (346)
6 PF00685 Sulfotransfer_1: Sulf 98.0 6.6E-06 1.4E-10 74.8 5.0 50 279-328 174-223 (267)
7 KOG3704|consensus 97.9 3.4E-06 7.3E-11 76.7 1.0 97 53-151 184-288 (360)
8 KOG3703|consensus 97.1 0.00058 1.2E-08 67.9 4.7 94 56-151 684-790 (873)
9 PF13469 Sulfotransfer_3: Sulf 96.8 0.00034 7.4E-09 60.3 0.1 24 129-154 191-214 (215)
10 KOG3988|consensus 96.6 0.0024 5.2E-08 58.8 4.4 157 56-244 174-332 (378)
11 PF09037 Sulphotransf: Stf0 su 92.8 0.12 2.5E-06 47.6 3.8 31 124-154 189-219 (245)
12 PF14069 SpoVIF: Stage VI spor 81.2 2.5 5.4E-05 31.8 3.8 35 286-320 31-65 (79)
13 PF09037 Sulphotransf: Stf0 su 78.8 1.7 3.6E-05 39.9 2.8 28 278-305 192-219 (245)
14 smart00874 B5 tRNA synthetase 72.2 4 8.7E-05 29.4 2.8 28 292-319 8-35 (71)
15 PF03484 B5: tRNA synthetase B 69.5 4.3 9.3E-05 29.5 2.4 30 292-321 8-37 (70)
16 PF13469 Sulfotransfer_3: Sulf 59.7 7.7 0.00017 32.7 2.6 24 280-305 191-214 (215)
17 PF02969 TAF: TATA box binding 58.1 12 0.00026 27.1 2.9 30 288-317 5-35 (66)
18 PF09424 YqeY: Yqey-like prote 54.0 21 0.00046 29.9 4.2 32 282-313 70-101 (143)
19 PF03869 Arc: Arc-like DNA bin 53.7 14 0.0003 25.1 2.5 29 286-314 13-41 (50)
20 PF12631 GTPase_Cys_C: Catalyt 44.4 46 0.001 24.2 4.3 33 280-312 37-69 (73)
21 KOG3988|consensus 44.1 22 0.00047 33.4 3.0 29 280-308 239-267 (378)
22 TIGR00135 gatC glutamyl-tRNA(G 42.9 31 0.00067 26.4 3.3 25 289-313 3-27 (93)
23 COG4424 Uncharacterized protei 42.7 25 0.00054 31.5 3.0 46 127-172 191-239 (250)
24 PRK00034 gatC aspartyl/glutamy 35.2 48 0.001 25.3 3.3 25 289-313 5-29 (95)
25 PF09183 DUF1947: Domain of un 33.9 26 0.00057 25.3 1.5 27 285-311 7-33 (65)
26 PF13833 EF-hand_8: EF-hand do 32.9 72 0.0016 21.1 3.6 26 290-315 8-34 (54)
27 KOG3704|consensus 30.9 16 0.00035 34.0 -0.0 20 284-303 270-289 (360)
28 cd08306 Death_FADD Fas-associa 30.8 90 0.002 23.6 4.1 34 280-315 4-37 (86)
29 PF03567 Sulfotransfer_2: Sulf 30.7 5.3 0.00011 35.4 -3.3 24 59-82 78-101 (253)
30 PF13318 DUF4089: Protein of u 29.9 69 0.0015 21.8 2.9 24 292-315 2-25 (50)
31 PF03567 Sulfotransfer_2: Sulf 28.9 16 0.00034 32.3 -0.5 22 4-25 79-100 (253)
32 smart00496 IENR2 Intron-encode 28.6 57 0.0012 19.1 2.0 16 299-314 1-16 (26)
33 PF06207 DUF1002: Protein of u 27.9 85 0.0018 28.5 4.0 57 210-314 147-203 (225)
34 PF13035 DUF3896: Protein of u 26.1 1.3E+02 0.0028 20.8 3.6 32 281-312 7-39 (61)
35 KOG3922|consensus 25.8 47 0.001 31.5 2.0 45 3-47 160-212 (361)
36 PRK03830 small acid-soluble sp 24.7 1.2E+02 0.0025 22.5 3.5 42 280-321 13-59 (73)
37 KOG3922|consensus 24.3 15 0.00033 34.7 -1.5 25 58-82 159-183 (361)
38 COG5181 HSH155 U2 snRNP splice 24.2 43 0.00093 34.9 1.6 24 269-303 329-352 (975)
39 KOG4157|consensus 23.5 43 0.00094 33.2 1.4 83 106-224 323-405 (418)
40 PRK09087 hypothetical protein; 23.2 1.1E+02 0.0024 27.4 4.0 31 286-316 156-186 (226)
41 PF08546 ApbA_C: Ketopantoate 21.9 1.8E+02 0.0038 23.0 4.6 34 280-313 35-68 (125)
42 PF06990 Gal-3-0_sulfotr: Gala 21.7 23 0.0005 34.9 -0.8 40 56-95 145-189 (402)
43 PF13342 Toprim_Crpt: C-termin 21.2 66 0.0014 22.9 1.6 16 298-313 11-26 (62)
44 KOG3936|consensus 20.9 1.7E+02 0.0036 22.4 3.7 31 280-316 68-99 (100)
45 PRK13717 conjugal transfer pro 20.7 1.3E+02 0.0029 24.6 3.5 53 258-313 21-78 (128)
46 PF04539 Sigma70_r3: Sigma-70 20.6 1.5E+02 0.0034 21.2 3.7 29 285-313 3-31 (78)
No 1
>KOG1584|consensus
Probab=100.00 E-value=3.7e-41 Score=308.49 Aligned_cols=173 Identities=38% Similarity=0.700 Sum_probs=156.6
Q ss_pred ccccccEEEEecCCCceeEEEeeeehhccC--CCCChHHHHHHHhccccccCchHHHHHHHHHHhccCCCceEEEechhh
Q psy10122 56 RQICNTIIYVTRNPKDTCVSYYHHCQLLEG--YRGNFEDFFKIFLDGLVCFGPFWEHVLEFWEASKRNPENILFLKYEDM 133 (330)
Q Consensus 56 ~~~~~KiI~i~RdPrD~~vS~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~g~~~~hv~~w~~~~~~~~~~vl~v~YEdL 133 (330)
.+.++|+||+.|||+|++||+|||.++... .+++++++++.|++|.+.+|+||+||++||. +..+++||+++||||
T Consensus 121 ~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~~~~~~e~~fe~F~~G~~~~Gp~~dHVl~~W~--~~~~~~VLFl~YEdm 198 (297)
T KOG1584|consen 121 KESKCKVVYVCRNPKDVLVSYYHFNRMLKTQPGPGTFEEFFESFCNGVVPYGPWWDHVLGYWE--LEDPKNVLFLKYEDM 198 (297)
T ss_pred hcCCCcEEEEecCccceeeeHHHHHhhhccCCCCCcHHHHHHHHhCCcCCcCChHHHHHHHHH--hcCCCceEEEEHHHh
Confidence 567899999999999999999999988755 4567999999999999999999999999999 999999999999999
Q ss_pred hhcHHHHHHHHHhccCCCCChhHHhhhhhcCChHHHHhhhhhhhhhHHhhhccccchhhcccccCcccccCccCCcCCCC
Q psy10122 134 KKDLKSIIQRTGKFLDHPLSTPDILQLEDHLSFESMKENRATNYELVIEINKENNLIDKEKCERGAFMRSGKIGGWKALM 213 (330)
Q Consensus 134 ~~dp~~~l~~i~~FLg~~~~~e~l~~iv~~~sfe~mk~~~~~n~~~~~~~~~p~~~~~~~~~~~~~f~RkG~~G~Wk~~f 213 (330)
++||..++.+||+|||.++++|++++++.+.+|+.|+.++..|.+.. +.+...++ .+.|||||.+|||||||
T Consensus 199 k~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~~~~~~~~~n~l~nle~n-----~~~~~~~~---~~~F~RKG~vGDWKn~~ 270 (297)
T KOG1584|consen 199 KADPKGEIKKLAEFLGCPFTKEEEDKGVVHLSFELCSLNPLSNLEVN-----KTEKLLHK---ISPFFRKGEVGDWKNYL 270 (297)
T ss_pred hhCHHHHHHHHHHHhCCCCCHHHHhhhhHHHHHHHHhhccccCceec-----cccccccc---chhhhcCCCcccccccC
Confidence 99999999999999999999999999999999999999999987653 22333343 47899999999999999
Q ss_pred cHHHHHHHHHHHHHhhcC-CCCccccc
Q psy10122 214 TNEMSNQVDLWTKDNLAG-YLSMVLDF 239 (330)
Q Consensus 214 s~e~~~~~~~~~~~~l~~-~g~~~~~~ 239 (330)
|++|.++||.+++++|+| +|+. |++
T Consensus 271 T~~~~ekfD~~~eekm~g~sgL~-F~~ 296 (297)
T KOG1584|consen 271 TPEMNEKFDKIYEEKMEGCSGLK-FRT 296 (297)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcc-ccc
Confidence 999999999999999999 7873 544
No 2
>PLN02164 sulfotransferase
Probab=100.00 E-value=3.4e-37 Score=293.26 Aligned_cols=173 Identities=28% Similarity=0.547 Sum_probs=145.4
Q ss_pred ccccccEEEEecCCCceeEEEeeeehhccC---CCCChHHHHHHHhccccccCchHHHHHHHHHHhccCCCceEEEechh
Q psy10122 56 RQICNTIIYVTRNPKDTCVSYYHHCQLLEG---YRGNFEDFFKIFLDGLVCFGPFWEHVLEFWEASKRNPENILFLKYED 132 (330)
Q Consensus 56 ~~~~~KiI~i~RdPrD~~vS~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~g~~~~hv~~w~~~~~~~~~~vl~v~YEd 132 (330)
..+++|+|||+|||+|++||+|||...... ..++++++++.|+.|...+|+|++||++||.+....+++|++++|||
T Consensus 162 ~~~~~KiIyv~RnPkDv~VS~yhf~~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YED 241 (346)
T PLN02164 162 VKSGCKMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYET 241 (346)
T ss_pred ccCCceEEEEecCchhheeeHHHHHhhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHH
Confidence 347899999999999999999998765433 33689999999999988899999999999994333667999999999
Q ss_pred hhhcHHHHHHHHHhccCCCCChh-----HHhhhhhcCChHHHHhhhhhhhhhHHhhhccccchhhcccccCcccccCccC
Q psy10122 133 MKKDLKSIIQRTGKFLDHPLSTP-----DILQLEDHLSFESMKENRATNYELVIEINKENNLIDKEKCERGAFMRSGKIG 207 (330)
Q Consensus 133 L~~dp~~~l~~i~~FLg~~~~~e-----~l~~iv~~~sfe~mk~~~~~n~~~~~~~~~p~~~~~~~~~~~~~f~RkG~~G 207 (330)
|++||.+++++||+|||++++++ .+++|+++|||++||+++. |.+.......+ ... +.+.|||||++|
T Consensus 242 mk~D~~~~v~ria~FLG~~~s~ee~~~~~v~~ive~~SFe~Mk~~e~-n~~~~~~~~~~-~~~-----~~~~FfRKG~vG 314 (346)
T PLN02164 242 MRADPLPYVKRLAEFMGYGFTAEEEEKGVVEKVVKLCSFETLKNLEA-NKGEKDREDRP-AVY-----ANSAYFRKGKVG 314 (346)
T ss_pred HHHhHHHHHHHHHHHhCCCCchhhcchHHHHHHHHHCCHHHHhhhHh-hcccccccccc-ccc-----cCcceeeccCCC
Confidence 99999999999999999999976 6999999999999999853 44321110000 001 156799999999
Q ss_pred CcCCCCcHHHHHHHHHHHHHhhcCCCCc
Q psy10122 208 GWKALMTNEMSNQVDLWTKDNLAGYLSM 235 (330)
Q Consensus 208 ~Wk~~fs~e~~~~~~~~~~~~l~~~g~~ 235 (330)
||||+||+||.++|+++++++|+|+|++
T Consensus 315 dWkn~lt~e~~~r~d~~~~ekl~gsgl~ 342 (346)
T PLN02164 315 DWQNYLTPEMAARIDGLMEEKFKGTGLL 342 (346)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999986
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=99.91 E-value=9.5e-25 Score=199.38 Aligned_cols=163 Identities=27% Similarity=0.493 Sum_probs=134.9
Q ss_pred cccccEEEEecCCCceeEEEeeeehhccC--CCCC-hHHHHHHHhccccccCchHHHHHHHHHHhccCCCceEEEechhh
Q psy10122 57 QICNTIIYVTRNPKDTCVSYYHHCQLLEG--YRGN-FEDFFKIFLDGLVCFGPFWEHVLEFWEASKRNPENILFLKYEDM 133 (330)
Q Consensus 57 ~~~~KiI~i~RdPrD~~vS~~~~~~~~~~--~~~~-~~~~~~~~l~g~~~~g~~~~hv~~w~~~~~~~~~~vl~v~YEdL 133 (330)
.+++|+|+++|||+|+++|.+++...... .++. ++++.+.++......+.|++++..|+. ....+++++|+||||
T Consensus 102 ~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~YEdl 179 (267)
T PF00685_consen 102 FPNAKIIYIVRDPRDVIVSRYKHSWRSNPFSDPGQRFEEFVDWFLQPRLLYGSWADHLKSWLS--SFDRDNVLIIRYEDL 179 (267)
T ss_dssp HTTEEEEEEE--HHHHHHHHHHHHHHBTTSTTHHSHHHHHHHHHHTTHSTTSCHHHHHHHHHH--HTTTSTEEEEEHHHH
T ss_pred ccccccceecccccchhHHHHHHHHhcccccccchhhhhhhhhhhccccccccccccccchhh--hhccchhhhhcchhh
Confidence 68999999999999999999988865543 2223 677777777666778999999999999 888999999999999
Q ss_pred hhcHHHHHHHHHhccCCCCChhHHhhhhhcCChHHHHhhhhhhhhhHHhhhccccchhhcccccCcccccCccCCcCCCC
Q psy10122 134 KKDLKSIIQRTGKFLDHPLSTPDILQLEDHLSFESMKENRATNYELVIEINKENNLIDKEKCERGAFMRSGKIGGWKALM 213 (330)
Q Consensus 134 ~~dp~~~l~~i~~FLg~~~~~e~l~~iv~~~sfe~mk~~~~~n~~~~~~~~~p~~~~~~~~~~~~~f~RkG~~G~Wk~~f 213 (330)
+.||.+++.+|++|||++++++.++.+++++++++|+.....+.... .+.. ...++|+|.+|+|+++|
T Consensus 180 ~~dp~~~l~~I~~FLgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~W~~~l 247 (267)
T PF00685_consen 180 VADPEKELKRICDFLGLPFSDEPLDKIVEKSSFDNMRSKEARNKSKL---------SDGS---SSRFFRKGKSGRWKNEL 247 (267)
T ss_dssp HHSHHHHHHHHHHHTTSS--HHHHHHHHHHTSHHHHHHETTTSSTTS---------CTTT---TSTSSEET-STGGGGTS
T ss_pred hhhhhHHHHHHHHHHhhccchhhhHHHHHhhhhhhhccccccccccc---------ccCC---cceeeeecccCcccccC
Confidence 99999999999999999999999999999999999998765432110 0001 47799999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCC
Q psy10122 214 TNEMSNQVDLWTKDNLAGYL 233 (330)
Q Consensus 214 s~e~~~~~~~~~~~~l~~~g 233 (330)
|+++++.|++++++.|+.+|
T Consensus 248 ~~e~~~~i~~~~~~~m~~~~ 267 (267)
T PF00685_consen 248 SPEQIDRIERICGDAMRELG 267 (267)
T ss_dssp BHHHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999987
No 4
>KOG1584|consensus
Probab=99.62 E-value=9.9e-17 Score=147.73 Aligned_cols=78 Identities=24% Similarity=0.216 Sum_probs=70.6
Q ss_pred ccccccccccccceE-------Eee-eccCCcc---cccHHHHHHhHHHHHHHHhhhcCCCCCHHHHHHHHhhhchhhhh
Q psy10122 253 LNTQFISPFRTGYVR-------CKG-VCMPEYY---VNFAEDIINDLKSIIQQTGKFLDHPLSTPDILQLEDHLSFESMK 321 (330)
Q Consensus 253 ~~~~~~~~~~~~~~~-------~~~-~~~~~~~---~~~ye~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~mk 321 (330)
+|++|+..||.|.+. |++ |++++.. +.+|||||+||+.+|+|||+|||++++.|++++++.|++|+.|+
T Consensus 156 ~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~~~~~~~~ 235 (297)
T KOG1584|consen 156 TFEEFFESFCNGVVPYGPWWDHVLGYWELEDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEEEDKGVVHLSFELCS 235 (297)
T ss_pred cHHHHHHHHhCCcCCcCChHHHHHHHHHhcCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHHHhhhhHHHHHHHHh
Confidence 499999999999988 588 5755552 23999999999999999999999999999999999999999999
Q ss_pred ccccccCCC
Q psy10122 322 ENQHIADSC 330 (330)
Q Consensus 322 ~~~~~~~~~ 330 (330)
.|+++||.+
T Consensus 236 ~n~l~nle~ 244 (297)
T KOG1584|consen 236 LNPLSNLEV 244 (297)
T ss_pred hccccCcee
Confidence 999999974
No 5
>PLN02164 sulfotransferase
Probab=99.28 E-value=1.3e-12 Score=124.95 Aligned_cols=76 Identities=14% Similarity=0.087 Sum_probs=63.9
Q ss_pred cccccccccccccceE-------Eee-eccC-Ccccc----cHHHHHHhHHHHHHHHhhhcCCCCCHH-----HHHHHHh
Q psy10122 252 ILNTQFISPFRTGYVR-------CKG-VCMP-EYYVN----FAEDIINDLKSIIQQTGKFLDHPLSTP-----DILQLED 313 (330)
Q Consensus 252 ~~~~~~~~~~~~~~~~-------~~~-~~~~-~~~~~----~ye~~~~~~~~~~~~~~~f~~~~~~~~-----~~~~~~~ 313 (330)
.+|++++..|+.|.+. |++ |+.+ +.+.| .||||++||.+.|+|||+|||.++|+| ++++|++
T Consensus 197 ~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee~~~~~v~~ive 276 (346)
T PLN02164 197 NSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEEEKGVVEKVVK 276 (346)
T ss_pred CCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhhcchHHHHHHHH
Confidence 4689999999999876 477 5543 33222 999999999999999999999999987 7999999
Q ss_pred hhchhhhhccccccC
Q psy10122 314 HLSFESMKENQHIAD 328 (330)
Q Consensus 314 ~~~~~~mk~~~~~~~ 328 (330)
++||++||++. +|+
T Consensus 277 ~~SFe~Mk~~e-~n~ 290 (346)
T PLN02164 277 LCSFETLKNLE-ANK 290 (346)
T ss_pred HCCHHHHhhhH-hhc
Confidence 99999999985 454
No 6
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=98.01 E-value=6.6e-06 Score=74.76 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=45.5
Q ss_pred ccHHHHHHhHHHHHHHHhhhcCCCCCHHHHHHHHhhhchhhhhccccccC
Q psy10122 279 NFAEDIINDLKSIIQQTGKFLDHPLSTPDILQLEDHLSFESMKENQHIAD 328 (330)
Q Consensus 279 ~~ye~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~mk~~~~~~~ 328 (330)
..||||+.||.+++++|++|||.+++++.++.++++++|++|+.+...+.
T Consensus 174 i~YEdl~~dp~~~l~~I~~FLgl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
T PF00685_consen 174 IRYEDLVADPEKELKRICDFLGLPFSDEPLDKIVEKSSFDNMRSKEARNK 223 (267)
T ss_dssp EEHHHHHHSHHHHHHHHHHHTTSS--HHHHHHHHHHTSHHHHHHETTTSS
T ss_pred hcchhhhhhhhHHHHHHHHHHhhccchhhhHHHHHhhhhhhhcccccccc
Confidence 38999999999999999999999999999999999999999999888764
No 7
>KOG3704|consensus
Probab=97.91 E-value=3.4e-06 Score=76.74 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=74.1
Q ss_pred cccccccccEEEEecCCCceeEEEeeeehhccCCCCChHHHH-HHHhcc-------ccccCchHHHHHHHHHHhccCCCc
Q psy10122 53 IHCRQICNTIIYVTRNPKDTCVSYYHHCQLLEGYRGNFEDFF-KIFLDG-------LVCFGPFWEHVLEFWEASKRNPEN 124 (330)
Q Consensus 53 ~h~~~~~~KiI~i~RdPrD~~vS~~~~~~~~~~~~~~~~~~~-~~~l~g-------~~~~g~~~~hv~~w~~~~~~~~~~ 124 (330)
+|..++..|.|.++|||...++|-|...-.++..-.+++.++ ..--.| .+..|-|..|+..|+. .+.-.+
T Consensus 184 v~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~~~P~fe~lafkn~~~g~id~~w~ai~iglY~~Hle~WL~--yFpL~q 261 (360)
T KOG3704|consen 184 VYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKPDIPTFEVLAFKNRTAGLIDTSWKAIRIGLYAVHLENWLR--YFPLRQ 261 (360)
T ss_pred HHhcCCCceEEEEEcCchhhhHHHHHHHHhcCCCCCceeeeeeecCccceeecchhhhhhhHHHHHHHHHHH--hCchhh
Confidence 345689999999999999999998876654443223333221 000011 1235778999999999 999999
Q ss_pred eEEEechhhhhcHHHHHHHHHhccCCC
Q psy10122 125 ILFLKYEDMKKDLKSIIQRTGKFLDHP 151 (330)
Q Consensus 125 vl~v~YEdL~~dp~~~l~~i~~FLg~~ 151 (330)
+++|+=|-|+.||.+++.++-+|||+.
T Consensus 262 ~lfVsGerli~dPa~E~~rVqdFLgLk 288 (360)
T KOG3704|consen 262 ILFVSGERLISDPAGELGRVQDFLGLK 288 (360)
T ss_pred eEEecCceeecCcHHHHHHHHHHhccc
Confidence 999999999999999999999999985
No 8
>KOG3703|consensus
Probab=97.10 E-value=0.00058 Score=67.91 Aligned_cols=94 Identities=16% Similarity=0.241 Sum_probs=72.9
Q ss_pred ccccccEEEEecCCCceeEEEeeeehhccCCC------------CC-hHHHHHHHhccccccCchHHHHHHHHHHhccCC
Q psy10122 56 RQICNTIIYVTRNPKDTCVSYYHHCQLLEGYR------------GN-FEDFFKIFLDGLVCFGPFWEHVLEFWEASKRNP 122 (330)
Q Consensus 56 ~~~~~KiI~i~RdPrD~~vS~~~~~~~~~~~~------------~~-~~~~~~~~l~g~~~~g~~~~hv~~w~~~~~~~~ 122 (330)
+-|.||||.|+-||.|++.|.|.|.+...|.. ++ -...++..-.-.+..|-|..|+..|+. ....
T Consensus 684 LvP~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~lq~RClvpG~Ya~HlerWL~--y~~~ 761 (873)
T KOG3703|consen 684 LVPHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKALQNRCLVPGWYATHLERWLT--YFPA 761 (873)
T ss_pred hCCcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHHHHhccCcchHHHHHHHHHH--hCCc
Confidence 56899999999999999999998887665511 11 011111111112345778899999999 9999
Q ss_pred CceEEEechhhhhcHHHHHHHHHhccCCC
Q psy10122 123 ENILFLKYEDMKKDLKSIIQRTGKFLDHP 151 (330)
Q Consensus 123 ~~vl~v~YEdL~~dp~~~l~~i~~FLg~~ 151 (330)
.+++++-=+.|+.||..++..+-.|||+.
T Consensus 762 ~QlliiDg~qLr~~Pa~vm~~~qkfLgv~ 790 (873)
T KOG3703|consen 762 QQLLIIDGQQLRTNPATVMNELQKFLGVT 790 (873)
T ss_pred ccEEEEccHHhccCcHHHHHHHHHHhCCC
Confidence 99999999999999999999999999983
No 9
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=96.78 E-value=0.00034 Score=60.35 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=18.3
Q ss_pred echhhhhcHHHHHHHHHhccCCCCCh
Q psy10122 129 KYEDMKKDLKSIIQRTGKFLDHPLST 154 (330)
Q Consensus 129 ~YEdL~~dp~~~l~~i~~FLg~~~~~ 154 (330)
+||||.+||.+++++|++ + +++++
T Consensus 191 ~yedl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 191 RYEDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp EHHHHHHSHHHHHHHHHH-C-----H
T ss_pred CHHHHHHCHHHHHHHHHH-h-hCCcC
Confidence 569999999999999999 6 77653
No 10
>KOG3988|consensus
Probab=96.62 E-value=0.0024 Score=58.84 Aligned_cols=157 Identities=13% Similarity=0.186 Sum_probs=85.5
Q ss_pred ccccccEEEEecCCCceeEEEeeeehhccCC-CCChHHHHHHHhccccccCchHHHHHHHHHHh-ccCCCceEEEechhh
Q psy10122 56 RQICNTIIYVTRNPKDTCVSYYHHCQLLEGY-RGNFEDFFKIFLDGLVCFGPFWEHVLEFWEAS-KRNPENILFLKYEDM 133 (330)
Q Consensus 56 ~~~~~KiI~i~RdPrD~~vS~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~g~~~~hv~~w~~~~-~~~~~~vl~v~YEdL 133 (330)
+-|++|++.++||.|.++-|....---+.++ ..+..+.+..|.+ .+.--..-. ..+.++.+.+-||.|
T Consensus 174 LfPNAKfllMvRDgRAtVhSmIsRKVtIaGfdlssyr~c~tkWN~----------aie~M~~QC~~vg~~~Cl~VyYEqL 243 (378)
T KOG3988|consen 174 LFPNAKFLLMVRDGRATVHSMISRKVTIAGFDLSSYRQCMTKWNQ----------AIEVMYFQCMEVGKKKCLKVYYEQL 243 (378)
T ss_pred HCCCceEEEEEecchHHHHHHHhccceeccccchHHHHHHHHHHH----------HHHHHHHHHHhccccchhHHHHHHH
Confidence 4689999999999998765543221111111 1222232322221 111000000 235568888999999
Q ss_pred hhcHHHHHHHHHhccCCCCChhHHhhhhhcCChHHHHhhhhhhhhhHHhhhccccchhhcccccCcccccCccCCcCCCC
Q psy10122 134 KKDLKSIIQRTGKFLDHPLSTPDILQLEDHLSFESMKENRATNYELVIEINKENNLIDKEKCERGAFMRSGKIGGWKALM 213 (330)
Q Consensus 134 ~~dp~~~l~~i~~FLg~~~~~e~l~~iv~~~sfe~mk~~~~~n~~~~~~~~~p~~~~~~~~~~~~~f~RkG~~G~Wk~~f 213 (330)
+..|++.+++|.+||++|++++.+. .|.|-+.+.. ++-+-...|.+.--.-+.-+---.|-..+
T Consensus 244 VlhPe~~mr~Il~FLdipw~d~vLh-------HedlIgk~~g---------VsLskvErSsdQVikpVNl~AlskWvg~i 307 (378)
T KOG3988|consen 244 VLHPEEWMRRILKFLDIPWSDAVLH-------HEDLIGKPGG---------VSLSKVERSSDQVIKPVNLEALSKWVGCI 307 (378)
T ss_pred HhCHHHHHHHHHHHhCCCcHHHHHh-------HHHhcCCCCC---------CChhhhhccHhhhhccccHHHHHHHhccC
Confidence 9999999999999999999987652 0111111000 00000000000000112223335788999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcccccccCCC
Q psy10122 214 TNEMSNQVDLWTKDNLAGYLSMVLDFEPISG 244 (330)
Q Consensus 214 s~e~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 244 (330)
+++-++.++.++ .-|+- |+|+|-.+
T Consensus 308 p~dvvrdma~iA-PmL~~-----LGYDp~an 332 (378)
T KOG3988|consen 308 PEDVVRDMADIA-PMLAI-----LGYDPYAN 332 (378)
T ss_pred CHHHHHHHHHHH-HHHHH-----hCCCCCCC
Confidence 999999888754 33443 56677665
No 11
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=92.82 E-value=0.12 Score=47.55 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.5
Q ss_pred ceEEEechhhhhcHHHHHHHHHhccCCCCCh
Q psy10122 124 NILFLKYEDMKKDLKSIIQRTGKFLDHPLST 154 (330)
Q Consensus 124 ~vl~v~YEdL~~dp~~~l~~i~~FLg~~~~~ 154 (330)
.-+.|.||||.+||..++.+|++|||++...
T Consensus 189 ~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 189 EPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp --EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred CeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 3467899999999999999999999996543
No 12
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=81.22 E-value=2.5 Score=31.80 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=29.6
Q ss_pred HhHHHHHHHHhhhcCCCCCHHHHHHHHhhhchhhh
Q psy10122 286 NDLKSIIQQTGKFLDHPLSTPDILQLEDHLSFESM 320 (330)
Q Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~m 320 (330)
+.+++-|++|+..+|+++|.|+.++||+...=..|
T Consensus 31 ~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~ 65 (79)
T PF14069_consen 31 KKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI 65 (79)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Confidence 46889999999999999999999999986543333
No 13
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=78.84 E-value=1.7 Score=39.89 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.4
Q ss_pred cccHHHHHHhHHHHHHHHhhhcCCCCCH
Q psy10122 278 VNFAEDIINDLKSIIQQTGKFLDHPLST 305 (330)
Q Consensus 278 ~~~ye~~~~~~~~~~~~~~~f~~~~~~~ 305 (330)
...|||+.+|+.+.+.+|++|||.+.+.
T Consensus 192 ~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 192 EITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred EEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 3499999999999999999999996655
No 14
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=72.20 E-value=4 Score=29.43 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=25.9
Q ss_pred HHHHhhhcCCCCCHHHHHHHHhhhchhh
Q psy10122 292 IQQTGKFLDHPLSTPDILQLEDHLSFES 319 (330)
Q Consensus 292 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 319 (330)
.+++.+++|.++|.+++..++....|+.
T Consensus 8 ~~~i~~llG~~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 8 RERINRLLGLDLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCeE
Confidence 5789999999999999999999999876
No 15
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=69.55 E-value=4.3 Score=29.50 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=23.0
Q ss_pred HHHHhhhcCCCCCHHHHHHHHhhhchhhhh
Q psy10122 292 IQQTGKFLDHPLSTPDILQLEDHLSFESMK 321 (330)
Q Consensus 292 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~mk 321 (330)
.+++.++||.++|.+++.++++...|+.=.
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~ 37 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEK 37 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEE
Confidence 578999999999999999999999987655
No 16
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=59.69 E-value=7.7 Score=32.73 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.0
Q ss_pred cHHHHHHhHHHHHHHHhhhcCCCCCH
Q psy10122 280 FAEDIINDLKSIIQQTGKFLDHPLST 305 (330)
Q Consensus 280 ~ye~~~~~~~~~~~~~~~f~~~~~~~ 305 (330)
.|||+..||...+++||. + .+|++
T Consensus 191 ~yedl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 191 RYEDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp EHHHHHHSHHHHHHHHHH-C-----H
T ss_pred CHHHHHHCHHHHHHHHHH-h-hCCcC
Confidence 479999999999999999 6 77653
No 17
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=58.09 E-value=12 Score=27.12 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhcCC-CCCHHHHHHHHhhhch
Q psy10122 288 LKSIIQQTGKFLDH-PLSTPDILQLEDHLSF 317 (330)
Q Consensus 288 ~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~ 317 (330)
+...|+-+|+=+|. +|++|....|.+.++|
T Consensus 5 ~~esvk~iAes~Gi~~l~de~a~~La~dvey 35 (66)
T PF02969_consen 5 SQESVKDIAESLGISNLSDEAAKALAEDVEY 35 (66)
T ss_dssp -HHHHHHHHHHTT---B-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 46789999999999 9999999999887776
No 18
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=54.03 E-value=21 Score=29.90 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.8
Q ss_pred HHHHHhHHHHHHHHhhhcCCCCCHHHHHHHHh
Q psy10122 282 EDIINDLKSIIQQTGKFLDHPLSTPDILQLED 313 (330)
Q Consensus 282 e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 313 (330)
+|+......+|.=|.+||...||+|+++.+|+
T Consensus 70 ~dlae~e~~Ei~iL~~yLP~~lseeEi~~~v~ 101 (143)
T PF09424_consen 70 PDLAEKEQAEIEILEEYLPKQLSEEEIEAIVE 101 (143)
T ss_dssp HHHHHHHHHHHHHHGGGS-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 58888899999999999999999999999986
No 19
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=53.70 E-value=14 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.278 Sum_probs=24.2
Q ss_pred HhHHHHHHHHhhhcCCCCCHHHHHHHHhh
Q psy10122 286 NDLKSIIQQTGKFLDHPLSTPDILQLEDH 314 (330)
Q Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 314 (330)
.+++..|++.|+-=|+|++.|++..|.+.
T Consensus 13 ~~l~~~lk~~A~~~gRS~NsEIv~~L~~~ 41 (50)
T PF03869_consen 13 EELKEKLKERAEENGRSMNSEIVQRLEEA 41 (50)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 36777889999999999999999988764
No 20
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=44.37 E-value=46 Score=24.23 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=27.4
Q ss_pred cHHHHHHhHHHHHHHHhhhcCCCCCHHHHHHHH
Q psy10122 280 FAEDIINDLKSIIQQTGKFLDHPLSTPDILQLE 312 (330)
Q Consensus 280 ~ye~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 312 (330)
.+|=+-.||+..++.+++.+|..-+++.+++|-
T Consensus 37 ~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IF 69 (73)
T PF12631_consen 37 PLDLVAEDLREALESLGEITGEVVTEDILDNIF 69 (73)
T ss_dssp -HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 467778899999999999999999999999984
No 21
>KOG3988|consensus
Probab=44.10 E-value=22 Score=33.41 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=27.2
Q ss_pred cHHHHHHhHHHHHHHHhhhcCCCCCHHHH
Q psy10122 280 FAEDIINDLKSIIQQTGKFLDHPLSTPDI 308 (330)
Q Consensus 280 ~ye~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (330)
+||.+..-|.++|.+|.+||+.+.|+.++
T Consensus 239 yYEqLVlhPe~~mr~Il~FLdipw~d~vL 267 (378)
T KOG3988|consen 239 YYEQLVLHPEEWMRRILKFLDIPWSDAVL 267 (378)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCcHHHHH
Confidence 89999999999999999999999998765
No 22
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=42.94 E-value=31 Score=26.38 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=22.6
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHh
Q psy10122 289 KSIIQQTGKFLDHPLSTPDILQLED 313 (330)
Q Consensus 289 ~~~~~~~~~f~~~~~~~~~~~~~~~ 313 (330)
+..|++||++--.+||++++++++.
T Consensus 3 ~~~v~~lA~La~L~l~eee~~~~~~ 27 (93)
T TIGR00135 3 DEEVKHLAKLARLELSEEEAESFAG 27 (93)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4679999999999999999998887
No 23
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.68 E-value=25 Score=31.46 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=35.9
Q ss_pred EEechhhhhcHHHHHHHHHhccCCCCCh---hHHhhhhhcCChHHHHhh
Q psy10122 127 FLKYEDMKKDLKSIIQRTGKFLDHPLST---PDILQLEDHLSFESMKEN 172 (330)
Q Consensus 127 ~v~YEdL~~dp~~~l~~i~~FLg~~~~~---e~l~~iv~~~sfe~mk~~ 172 (330)
-+-||.|-+||-..+..+|+.||++.+- ..+++..+..|-|.|...
T Consensus 191 riaYe~Lsadp~aava~~~ealgv~~p~a~~p~~a~qad~~s~eWv~Ry 239 (250)
T COG4424 191 RIAYEVLSADPTAAVASVLEALGVDPPLAPAPMLARQADQRSDEWVDRY 239 (250)
T ss_pred HHhHHHHccCcHHHHHHHHHHhCCCCCCCcCchHHHhhhhhhHHHHHHH
Confidence 3679999999999999999999998653 245566666777777653
No 24
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=35.16 E-value=48 Score=25.31 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=22.5
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHh
Q psy10122 289 KSIIQQTGKFLDHPLSTPDILQLED 313 (330)
Q Consensus 289 ~~~~~~~~~f~~~~~~~~~~~~~~~ 313 (330)
+..|++||++.-.+|+++++++++.
T Consensus 5 ~e~i~~la~La~l~l~~ee~~~~~~ 29 (95)
T PRK00034 5 REEVKHLAKLARLELSEEELEKFAG 29 (95)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4679999999999999999999877
No 25
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=33.95 E-value=26 Score=25.27 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=17.1
Q ss_pred HHhHHHHHHHHhhhcCCCCCHHHHHHH
Q psy10122 285 INDLKSIIQQTGKFLDHPLSTPDILQL 311 (330)
Q Consensus 285 ~~~~~~~~~~~~~f~~~~~~~~~~~~~ 311 (330)
++|.++-..++..+.|.++|.+.++-.
T Consensus 7 kKe~k~~~~k~~~~ygIdi~~~~vEI~ 33 (65)
T PF09183_consen 7 KKEIKEIKEKIKEKYGIDISGEKVEIG 33 (65)
T ss_dssp HHHHHHHHHHHHT-TT---TT---EEE
T ss_pred HHHHHHHHHHHHHHhCcCCCccceeee
Confidence 689999999999999999999776533
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=32.94 E-value=72 Score=21.10 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.3
Q ss_pred HHHHHHhhhcCCC-CCHHHHHHHHhhh
Q psy10122 290 SIIQQTGKFLDHP-LSTPDILQLEDHL 315 (330)
Q Consensus 290 ~~~~~~~~f~~~~-~~~~~~~~~~~~~ 315 (330)
.+++++++-+|.. +|+++++.|....
T Consensus 8 ~~~~~~l~~~g~~~~s~~e~~~l~~~~ 34 (54)
T PF13833_consen 8 EEFRRALSKLGIKDLSEEEVDRLFREF 34 (54)
T ss_dssp HHHHHHHHHTTSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhc
Confidence 3556666777999 9999999998753
No 27
>KOG3704|consensus
Probab=30.86 E-value=16 Score=34.02 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHhHHHHHHHHhhhcCCCC
Q psy10122 284 IINDLKSIIQQTGKFLDHPL 303 (330)
Q Consensus 284 ~~~~~~~~~~~~~~f~~~~~ 303 (330)
+|-||.+||+||.+|||..-
T Consensus 270 li~dPa~E~~rVqdFLgLkr 289 (360)
T KOG3704|consen 270 LISDPAGELGRVQDFLGLKR 289 (360)
T ss_pred eecCcHHHHHHHHHHhcccc
Confidence 67899999999999999753
No 28
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=30.81 E-value=90 Score=23.55 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=28.8
Q ss_pred cHHHHHHhHHHHHHHHhhhcCCCCCHHHHHHHHhhh
Q psy10122 280 FAEDIINDLKSIIQQTGKFLDHPLSTPDILQLEDHL 315 (330)
Q Consensus 280 ~ye~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 315 (330)
.++-+-+++.+.-++++.-|| ||+.+|+.|...-
T Consensus 4 ~f~~i~~~lG~~Wk~laR~LG--lse~~Id~i~~~~ 37 (86)
T cd08306 4 AFDVICENVGRDWRKLARKLG--LSETKIESIEEAH 37 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcC--CCHHHHHHHHHHC
Confidence 356677889999999999999 8999999998643
No 29
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=30.72 E-value=5.3 Score=35.38 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=17.1
Q ss_pred cccEEEEecCCCceeEEEeeeehh
Q psy10122 59 CNTIIYVTRNPKDTCVSYYHHCQL 82 (330)
Q Consensus 59 ~~KiI~i~RdPrD~~vS~~~~~~~ 82 (330)
+...|.++|||.+++||.|++...
T Consensus 78 ~~~~~t~vRdP~~R~vS~y~~~~~ 101 (253)
T PF03567_consen 78 SYFKFTFVRDPVDRLVSAYYDKIR 101 (253)
T ss_dssp --EEEEEE--HHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHh
Confidence 467889999999999999877653
No 30
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=29.89 E-value=69 Score=21.80 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.1
Q ss_pred HHHHhhhcCCCCCHHHHHHHHhhh
Q psy10122 292 IQQTGKFLDHPLSTPDILQLEDHL 315 (330)
Q Consensus 292 ~~~~~~f~~~~~~~~~~~~~~~~~ 315 (330)
|.+.++.||.+|+++-+..|+.+.
T Consensus 2 v~~~a~llgL~l~~~~r~~V~~n~ 25 (50)
T PF13318_consen 2 VDQMAALLGLPLDEEWRPGVVANF 25 (50)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Confidence 778999999999999999988753
No 31
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=28.87 E-value=16 Score=32.30 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=16.7
Q ss_pred ceEEEEecCCcceEeehhhhhc
Q psy10122 4 AAIIYVTRNPKDTCVSYYHHCQ 25 (330)
Q Consensus 4 ~KiIyv~RnPkDv~vS~~~f~~ 25 (330)
..++-+.|||-+-+||.|++..
T Consensus 79 ~~~~t~vRdP~~R~vS~y~~~~ 100 (253)
T PF03567_consen 79 YFKFTFVRDPVDRLVSAYYDKI 100 (253)
T ss_dssp -EEEEEE--HHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHH
Confidence 5678899999999999998864
No 32
>smart00496 IENR2 Intron-encoded nuclease repeat 2. Short helical motif of unknown function (unpublished results).
Probab=28.61 E-value=57 Score=19.14 Aligned_cols=16 Identities=6% Similarity=0.001 Sum_probs=14.4
Q ss_pred cCCCCCHHHHHHHHhh
Q psy10122 299 LDHPLSTPDILQLEDH 314 (330)
Q Consensus 299 ~~~~~~~~~~~~~~~~ 314 (330)
+|+..|+|...+|.+.
T Consensus 1 ~GkkhSEETK~KMSea 16 (26)
T smart00496 1 KGKKHSEETKKKMSEA 16 (26)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 5899999999999885
No 33
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=27.90 E-value=85 Score=28.46 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=44.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCcccccccCCCCCCCCcccccccccccccccceEEeeeccCCcccccHHHHHHhHH
Q psy10122 210 KALMTNEMSNQVDLWTKDNLAGYLSMVLDFEPISGQSTDGTRILNTQFISPFRTGYVRCKGVCMPEYYVNFAEDIINDLK 289 (330)
Q Consensus 210 k~~fs~e~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ye~~~~~~~ 289 (330)
.+.++++.+..+-..+.+.++..... + .+|.+
T Consensus 147 ~~~~~~~k~~~~i~~iK~~va~~~~~------------t------------------------------------~~eI~ 178 (225)
T PF06207_consen 147 GDGIGDEKANAAIAEIKEEVAKQKPK------------T------------------------------------DEEIR 178 (225)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCC------------C------------------------------------HHHHH
Confidence 45677888877777777777765541 0 35778
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHhh
Q psy10122 290 SIIQQTGKFLDHPLSTPDILQLEDH 314 (330)
Q Consensus 290 ~~~~~~~~f~~~~~~~~~~~~~~~~ 314 (330)
..|.+++.=+|..||++++++|+..
T Consensus 179 ~IV~~~~~~~~i~ls~~q~~~i~~l 203 (225)
T PF06207_consen 179 NIVNNVLNNYNINLSDEQIQQIVNL 203 (225)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8999999999999999999999974
No 34
>PF13035 DUF3896: Protein of unknown function (DUF3896)
Probab=26.10 E-value=1.3e+02 Score=20.79 Aligned_cols=32 Identities=22% Similarity=0.055 Sum_probs=25.8
Q ss_pred HHHHHHhHHHHHHHHhh-hcCCCCCHHHHHHHH
Q psy10122 281 AEDIINDLKSIIQQTGK-FLDHPLSTPDILQLE 312 (330)
Q Consensus 281 ye~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~ 312 (330)
|-+-|+-|.---|++|+ +....||+++.++|.
T Consensus 7 y~atkk~lelkkq~lc~kls~~~ls~~er~qi~ 39 (61)
T PF13035_consen 7 YHATKKYLELKKQQLCKKLSSMHLSEKEREQIK 39 (61)
T ss_pred chhHHHHHHHHHHHHHHHHhhcccCHHHHHHHH
Confidence 55667777777789997 778999999999884
No 35
>KOG3922|consensus
Probab=25.78 E-value=47 Score=31.53 Aligned_cols=45 Identities=29% Similarity=0.357 Sum_probs=29.2
Q ss_pred CceEEEEecCCcceEeehhhhhcccc--------CCCCCHHHHHHhhhhcCCc
Q psy10122 3 TAAIIYVTRNPKDTCVSYYHHCQLLE--------GYRGNFEDFFKIFLDGLGT 47 (330)
Q Consensus 3 k~KiIyv~RnPkDv~vS~~~f~~~~~--------~~~~s~~ef~e~Fl~g~~~ 47 (330)
++=||=|.|+|-+.+||+|+|.+--. ...+.-++|-+..++|...
T Consensus 160 ~PIYINvIRdPveRllS~yyflRfgd~yr~~l~r~~~g~~~tfdeCvl~g~~d 212 (361)
T KOG3922|consen 160 RPIYINVIRDPVERLLSYYYFLRFGDNYREGLPRLPAGNKETFDECVLEGGPD 212 (361)
T ss_pred CceEEeeeccHHHHHHhHhhhhccccccccCcccCCCCCcccHHHHHHCCCCC
Confidence 45567779999999999999987421 1113334555566666543
No 36
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=24.75 E-value=1.2e+02 Score=22.46 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=35.9
Q ss_pred cHHHHHHhHHHHHHHHhhhcCCCCCHHHHHHHHh-----hhchhhhh
Q psy10122 280 FAEDIINDLKSIIQQTGKFLDHPLSTPDILQLED-----HLSFESMK 321 (330)
Q Consensus 280 ~ye~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-----~~~~~~mk 321 (330)
.-.+|+.+....|+.--+.|-..+|+++...|.+ .-|+++|+
T Consensus 13 kLQ~mi~nTieNi~eAee~l~~~~~~~~~~~i~eKN~RR~esi~~~R 59 (73)
T PRK03830 13 KLQEMIQNTIENIEEAEETIAEEDSEKEKQAIEEKNERREESIDGMR 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 6789999999999999999999999999999987 44566664
No 37
>KOG3922|consensus
Probab=24.26 E-value=15 Score=34.70 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.3
Q ss_pred ccccEEEEecCCCceeEEEeeeehh
Q psy10122 58 ICNTIIYVTRNPKDTCVSYYHHCQL 82 (330)
Q Consensus 58 ~~~KiI~i~RdPrD~~vS~~~~~~~ 82 (330)
+++=+|=++|||.++++|+|.|.+-
T Consensus 159 ~~PIYINvIRdPveRllS~yyflRf 183 (361)
T KOG3922|consen 159 ARPIYINVIRDPVERLLSYYYFLRF 183 (361)
T ss_pred CCceEEeeeccHHHHHHhHhhhhcc
Confidence 4444566789999999999977653
No 38
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=24.16 E-value=43 Score=34.94 Aligned_cols=24 Identities=21% Similarity=0.007 Sum_probs=20.9
Q ss_pred eeeccCCcccccHHHHHHhHHHHHHHHhhhcCCCC
Q psy10122 269 KGVCMPEYYVNFAEDIINDLKSIIQQTGKFLDHPL 303 (330)
Q Consensus 269 ~~~~~~~~~~~~ye~~~~~~~~~~~~~~~f~~~~~ 303 (330)
|.|+.||+ =.|.+||||.|||+|-
T Consensus 329 kSw~aRhT-----------giri~qqI~~llG~s~ 352 (975)
T COG5181 329 KSWEARHT-----------GIRIAQQICELLGRSR 352 (975)
T ss_pred cchhhhch-----------hhHHHHHHHHHhCccH
Confidence 67999998 5689999999999983
No 39
>KOG4157|consensus
Probab=23.50 E-value=43 Score=33.18 Aligned_cols=83 Identities=23% Similarity=0.271 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHhccCCCceEEEechhhhhcHHHHHHHHHhccCCCCChhHHhhhhhcCChHHHHhhhhhhhhhHHhhhc
Q psy10122 106 PFWEHVLEFWEASKRNPENILFLKYEDMKKDLKSIIQRTGKFLDHPLSTPDILQLEDHLSFESMKENRATNYELVIEINK 185 (330)
Q Consensus 106 ~~~~hv~~w~~~~~~~~~~vl~v~YEdL~~dp~~~l~~i~~FLg~~~~~e~l~~iv~~~sfe~mk~~~~~n~~~~~~~~~ 185 (330)
.|..|-.+|.. ....++.+.||++..++...+..+..|+|++..++..--.
T Consensus 323 ~~ss~~~~w~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------- 373 (418)
T KOG4157|consen 323 GWSSHTLSWAR----KGTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPESLMLCD------------------------- 373 (418)
T ss_pred Cccccchhhhc----ccccceeEEeecccccccccccccccccCccccccccCCc-------------------------
Confidence 34455556644 4455589999999999999999999999976654321100
Q ss_pred cccchhhcccccCcccccCccCCcCCCCcHHHHHHHHHH
Q psy10122 186 ENNLIDKEKCERGAFMRSGKIGGWKALMTNEMSNQVDLW 224 (330)
Q Consensus 186 p~~~~~~~~~~~~~f~RkG~~G~Wk~~fs~e~~~~~~~~ 224 (330)
. ..+ .+.|.|.|...-=.+.+++.+.+.++-.
T Consensus 374 --~-~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (418)
T KOG4157|consen 374 --I-MQK----EGIFGRRGKRLLSPDPLTDSMLDEVKGL 405 (418)
T ss_pred --c-ccc----cCcccccCCccCCCCcchhhhhhhhhcc
Confidence 0 111 4567777877777788888888877643
No 40
>PRK09087 hypothetical protein; Validated
Probab=23.19 E-value=1.1e+02 Score=27.38 Aligned_cols=31 Identities=10% Similarity=-0.059 Sum_probs=25.6
Q ss_pred HhHHHHHHHHhhhcCCCCCHHHHHHHHhhhc
Q psy10122 286 NDLKSIIQQTGKFLDHPLSTPDILQLEDHLS 316 (330)
Q Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 316 (330)
++....+++.++..|..+++|+++-|+.+++
T Consensus 156 e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 156 ALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 3556677788888899999999999999765
No 41
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=21.94 E-value=1.8e+02 Score=22.97 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=26.9
Q ss_pred cHHHHHHhHHHHHHHHhhhcCCCCCHHHHHHHHh
Q psy10122 280 FAEDIINDLKSIIQQTGKFLDHPLSTPDILQLED 313 (330)
Q Consensus 280 ~ye~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 313 (330)
-+.++.+.+.+|+-.|++-+|.+|+.+.+.+.+.
T Consensus 35 ~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~ 68 (125)
T PF08546_consen 35 EARELIRALMREVIAVARALGIPLDPDDLEEAIE 68 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 4678999999999999999999999996655543
No 42
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=21.72 E-value=23 Score=34.93 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=29.4
Q ss_pred ccccccEEEEecCCCceeEEEeeeehhccC-----CCCChHHHHH
Q psy10122 56 RQICNTIIYVTRNPKDTCVSYYHHCQLLEG-----YRGNFEDFFK 95 (330)
Q Consensus 56 ~~~~~KiI~i~RdPrD~~vS~~~~~~~~~~-----~~~~~~~~~~ 95 (330)
..+++++|-|+|||.....|.|+|...... ..+++++|++
T Consensus 145 mP~dt~yiTILRdP~~~feS~f~Yy~~~~~~~~~~~~~~l~~FL~ 189 (402)
T PF06990_consen 145 MPPDTKYITILRDPVSHFESSFNYYKRYAPAFRKAPNNSLEEFLE 189 (402)
T ss_pred CCCCCeEEEEEcCHHHHHHhHHHHhhccchhhhcCCcchHHHHHh
Confidence 456899999999999999999998864321 2223666665
No 43
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=21.23 E-value=66 Score=22.89 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=14.9
Q ss_pred hcCCCCCHHHHHHHHh
Q psy10122 298 FLDHPLSTPDILQLED 313 (330)
Q Consensus 298 f~~~~~~~~~~~~~~~ 313 (330)
+.|+.||++++.+|+.
T Consensus 11 i~gk~lt~~~~~~Ll~ 26 (62)
T PF13342_consen 11 IAGKKLTDEEVKELLE 26 (62)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 6899999999999996
No 44
>KOG3936|consensus
Probab=20.88 E-value=1.7e+02 Score=22.35 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=22.6
Q ss_pred cHHHHHHhHHHHHHHHhh-hcCCCCCHHHHHHHHhhhc
Q psy10122 280 FAEDIINDLKSIIQQTGK-FLDHPLSTPDILQLEDHLS 316 (330)
Q Consensus 280 ~ye~~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~ 316 (330)
|||.|++ ++ -|. |-....+-++|+-++..+.
T Consensus 68 FYEelk~--RR----ScR~fSn~dVPleVI~NlikTAG 99 (100)
T KOG3936|consen 68 FYEELKK--RR----SCRFFSNEDVPLEVIDNLIKTAG 99 (100)
T ss_pred HHHHHHh--hh----hhhhhccccCcHHHHHHHHHhcc
Confidence 9999986 23 344 4567888899988887653
No 45
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=20.66 E-value=1.3e+02 Score=24.65 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=36.4
Q ss_pred cccccccceEE----eee-ccCCcccccHHHHHHhHHHHHHHHhhhcCCCCCHHHHHHHHh
Q psy10122 258 ISPFRTGYVRC----KGV-CMPEYYVNFAEDIINDLKSIIQQTGKFLDHPLSTPDILQLED 313 (330)
Q Consensus 258 ~~~~~~~~~~~----~~~-~~~~~~~~~ye~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 313 (330)
+.+.|.|.+.+ -.| ..=..+.-.-=|||+=+..-+++++ +++|++++.+.+.+
T Consensus 21 ~~~~~~~~~~~~a~~s~~~~~~~~P~iV~FDmK~Tld~F~~Q~~---~~~lte~q~e~lt~ 78 (128)
T PRK13717 21 TVPGCLAMVLLNAAVSYGIVRLNAPVTAAFNMKQTVDAFFDSAS---QKQLSEAQSKALSA 78 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCeEEEEehHHHHHHHHHHHh---ccCCCHHHHHHHHH
Confidence 45677777763 112 1111322223399999999999996 89999999999886
No 46
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=20.63 E-value=1.5e+02 Score=21.20 Aligned_cols=29 Identities=7% Similarity=0.088 Sum_probs=21.3
Q ss_pred HHhHHHHHHHHhhhcCCCCCHHHHHHHHh
Q psy10122 285 INDLKSIIQQTGKFLDHPLSTPDILQLED 313 (330)
Q Consensus 285 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 313 (330)
.+-+.+.++++..=+|+..+.++|.+.+.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 45677888888888899999888887654
Done!