RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10122
         (330 letters)



>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain. 
          Length = 254

 Score =  158 bits (402), Expect = 7e-47
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 16/173 (9%)

Query: 62  IIYVTRNPKDTCVSYYHH--CQLLEGYRGNFEDFFKIFLDGLVCFGPFWEHVLEFWEASK 119
           IIY+ RNPKD  VSYYH      +    G   +F + FL+G V  G +++HV  +W+   
Sbjct: 95  IIYLVRNPKDVAVSYYHFFRMAKILKAPGTPFEFVEDFLNGKVNCGSYFDHVKGWWK--L 152

Query: 120 RNPENILFLKYEDMKKDLKSIIQRTGKFLDHPLSTPDILQLEDHLSFESMKENRATNYEL 179
           R P NILFL+YED+KKD +  I++  +FL  PL+  ++ ++  HLSFE+MK N   NY  
Sbjct: 153 RPPGNILFLRYEDLKKDPRGEIKKIAEFLGIPLTEEELDKIVKHLSFENMKGNPCLNYSK 212

Query: 180 VIEINKENNLIDKEKCERGAFMRSGKIGGWKALMTNEMSNQVDLWTKDNLAGY 232
           + +             E   F R G +G WK   T E + + D   ++ + G 
Sbjct: 213 LPKH------------EVSPFFRKGLVGDWKNYFTVEQAEKFDEIYQEKMKGT 253



 Score = 39.2 bits (92), Expect = 0.001
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 282 EDIINDLKSIIQQTGKFLDHPLSTPDILQLEDHLSFESMKEN 323
           ED+  D +  I++  +FL  PL+  ++ ++  HLSFE+MK N
Sbjct: 164 EDLKKDPRGEIKKIAEFLGIPLTEEELDKIVKHLSFENMKGN 205


>gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase.
          Length = 346

 Score = 96.1 bits (239), Expect = 2e-22
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 27/175 (15%)

Query: 62  IIYVTRNPKDTCVS---YYHHCQLLEGYRGNFEDFFKIFLDGLVCFGPFWEHVLEFWEAS 118
           ++Y+ R+PKDT +S   + H  +  +G   + E+ F +F  GL  +GP+ +HVL +W+A 
Sbjct: 168 MVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAY 227

Query: 119 KRNPENILFLKYEDMKKDLKSIIQRTGKFLDHPLSTPD-----ILQLEDHLSFESMKENR 173
           + NP+ ILFLKYE M+ D    ++R  +F+ +  +  +     + ++    SFE++K   
Sbjct: 228 QENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEEEKGVVEKVVKLCSFETLK--- 284

Query: 174 ATNYELVIEINKENNLIDKEKCER------GAFMRSGKIGGWKALMTNEMSNQVD 222
                     N E N  +K++ +R       A+ R GK+G W+  +T EM+ ++D
Sbjct: 285 ----------NLEANKGEKDREDRPAVYANSAYFRKGKVGDWQNYLTPEMAARID 329


>gnl|CDD|113237 pfam04458, DUF505, Protein of unknown function (DUF505).  Family of
           uncharacterized prokaryotic proteins.
          Length = 591

 Score = 32.5 bits (74), Expect = 0.34
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 106 PFWEHVLEFWEASKRNPENIL--FLKYEDMKKDLKSIIQRTGKFLDHPLSTPDILQLEDH 163
           P  EH+L+ ++   +     L  F    D  + LK+I     K        PD+L     
Sbjct: 260 PAGEHLLDAYKMMGKVEYPGLPPFSLEPDELRLLKAID----KLYKKHEENPDVLPTLKE 315

Query: 164 LSFESMKENRATNYELVIEINKE---NNLIDKEKCERG 198
           +    ++E    + + V     E     LI++E  + G
Sbjct: 316 IKRVLVEEWGRKDPDDVTAALYELESFGLIEREVVKYG 353


>gnl|CDD|222827 PHA01635, PHA01635, hypothetical protein.
          Length = 231

 Score = 29.3 bits (66), Expect = 2.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 273 MPEYYVNFAEDIINDLKSIIQ 293
           +P+  VN A D+IN  K I  
Sbjct: 209 IPQSDVNIANDLINFFKKIAS 229


>gnl|CDD|222158 pfam13474, SnoaL_3, SnoaL-like domain.  This family contains a
           large number of proteins that share the SnoaL fold.
          Length = 121

 Score = 28.5 bits (64), Expect = 2.1
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 12/59 (20%)

Query: 81  QLLEGY-----RGNFEDFFKIFLDGLVCFGPFW-------EHVLEFWEASKRNPENILF 127
            LL+ +      G+ + +F +F D +   G          E V  +        E   F
Sbjct: 3   ALLDAWHEAAAEGDLDAYFALFADDVSFIGTGADELWRGREAVRAYLRPDFDKGEPWSF 61


>gnl|CDD|187853 cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1.
           CRISPR (Clustered Regularly Interspaced Short
           Palindromic Repeats) and associated Cas proteins
           comprise a system for heritable host defense by
           prokaryotic cells against phage and other foreign DNA;
           Cas1 is the most universal CRISPR system protein thought
           to be involved in spacer integration; Cas1 is
           metal-dependent deoxyribonuclease, also binds RNA; Shown
           to possess a unique fold consisting of a N-terminal
           beta-strand domain and a C-terminal alpha-helical
           domain.
          Length = 320

 Score = 28.7 bits (65), Expect = 3.8
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 113 EFWEASKRNPENILFLKYEDMKKDLKSIIQRTGKFLDHPLSTPDILQLEDHLSFESMKEN 172
            F E +  N   +L   Y+D   DL   +    +  +   S  +++ +E ++        
Sbjct: 103 SFVEGAAHNMRRVL-KYYKDRGDDLDDYLDEIEEQKESANSINELMGVEGNI-------- 153

Query: 173 RATNYELVIEINKENNLIDK 192
           R T Y    EI K+    +K
Sbjct: 154 RKTYYSAFDEILKDEFRFEK 173


>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
           Kinase, Plant B-type Cyclin-Dependent protein Kinase.
           Serine/Threonine Kinases (STKs), Plant B-type
           Cyclin-Dependent protein Kinase (CdkB) subfamily,
           catalytic (c) domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The CdkB subfamily is
           part of a larger superfamily that includes the catalytic
           domains of other protein STKs, protein tyrosine kinases,
           RIO kinases, aminoglycoside phosphotransferase, choline
           kinase, and phosphoinositide 3-kinase. CDKs belong to a
           large family of STKs that are regulated by their cognate
           cyclins. Together, they are involved in the control of
           cell-cycle progression, transcription, and neuronal
           function. The plant-specific B-type CDKs are expressed
           from the late S to the M phase of the cell cycle. They
           are characterized by the cyclin binding motif
           PPT[A/T]LRE. They play a role in controlling mitosis and
           integrating developmental pathways, such as stomata and
           leaf development. CdkB has been shown to associate with
           both cyclin B, which controls G2/M transition, and
           cyclin D, which acts as a mediator in linking
           extracellular signals to the cell cycle.
          Length = 295

 Score = 28.6 bits (64), Expect = 4.5
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 109 EHVLEFWEASKRNPENILFLKYEDMKKDLKSIIQRTGKFLDHPLSTPDI 157
           EHV E      +N +  L+L +E +  DLK  +   G+    PL    I
Sbjct: 70  EHVEE------KNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTI 112


>gnl|CDD|236980 PRK11780, PRK11780, isoprenoid biosynthesis protein with
           amidotransferase-like domain; Provisional.
          Length = 217

 Score = 27.8 bits (63), Expect = 5.9
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 155 PDILQLE--DHLSFESMKENR 173
           PDI QL   +HL+ E M E R
Sbjct: 41  PDIPQLHVINHLTGEEMGETR 61


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,017,707
Number of extensions: 1639397
Number of successful extensions: 1383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1377
Number of HSP's successfully gapped: 19
Length of query: 330
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 233
Effective length of database: 6,635,264
Effective search space: 1546016512
Effective search space used: 1546016512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)