RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10123
(123 letters)
>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain.
Length = 254
Score = 48.5 bits (116), Expect = 8e-08
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 6 QDLKSIIQRTGKFLDHPLSTPDILQLEDHLSFESMKENRATNYELVIEINKENNLIDKEK 65
+D + I++ +FL PL+ ++ ++ HLSFE+MK N NY + +
Sbjct: 168 KDPRGEIKKIAEFLGIPLTEEELDKIVKHLSFENMKGNPCLNYSKLPKH----------- 216
Query: 66 CERGAFMRSGKIGG 79
E F R G +G
Sbjct: 217 -EVSPFFRKGLVGD 229
Score = 35.0 bits (81), Expect = 0.005
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 62 DKEKCERGAFMRS-GKIGGLPVYVR-------DSVGHISNLPGRRFIKAHLPLRLLPKKL 113
D EK E + L Y + ++ LP R IK HLPL LLPK L
Sbjct: 29 DFEKFEEPHLFNPHNRSPFLEWYDLFVIFDVAEGPVRLNALPSPRIIKTHLPLHLLPKSL 88
Query: 114 QDGSTK 119
D + K
Sbjct: 89 WDPNAK 94
>gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase;
Provisional.
Length = 359
Score = 29.6 bits (67), Expect = 0.34
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 46 TNYELVIEINKENNLIDKEKCERGAFMRSGKIGGLPVYVRDSVG 89
TN+ + ++ ++ N + + ++G +RSG G P VR ++G
Sbjct: 301 TNF-IFVDTGRDANELFEALLKKGYIVRSGAALGFPTGVRITIG 343
>gnl|CDD|222580 pfam14180, DOCK_C2, GTP-GDP exchange factor. Dock proteins are
atypical GTP-GDP exchange factors for the small GTPases
Pac and Cdc42, and are implicated in biological roles
related to cell-migration and phagocytosis.
Length = 178
Score = 27.3 bits (61), Expect = 1.6
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 33 DHLSFESMKENRATNYELVIEINKENNLIDKEKCERGAFMRSGKIGGLPVYVRDSVGHIS 92
L F +++A N + +E+ ++++ E+ + RS + SV + +
Sbjct: 11 KSLKFSKQPKSKARNIVVTVEL-RDSDGEVLEEGLPIIYNRSSGPSLVSSA-FSSVSYHN 68
Query: 93 NLPGRRF---IKAHLPLRLLPK 111
P +F K LPL L P
Sbjct: 69 KNP--QFNDEFKLQLPLDLTPG 88
>gnl|CDD|218695 pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition
protein Sip1. This family consists of several raffinose
synthase proteins, also known as seed inhibition (Sip1)
proteins. Raffinose (O-alpha- D-galactopyranosyl-
(1-->6)- O-alpha- D-glucopyranosyl-(1<-->2)- O-beta-
D-fructofuranoside) is a widespread oligosaccharide in
plant seeds and other tissues. Raffinose synthase
(EC:2.4.1.82) is the key enzyme that channels sucrose
into the raffinose oligosaccharide pathway. Raffinose
family oligosaccharides (RFOs) are ubiquitous in plant
seeds and are thought to play critical roles in the
acquisition of tolerance to desiccation and seed
longevity. Raffinose synthases are alkaline
alpha-galactosidases and are solely responsible for RFO
breakdown in germinating maize seeds, whereas acidic
galactosidases appear to have other functions.
Length = 742
Score = 27.7 bits (62), Expect = 1.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 77 IGGLPVYVRDSVGH 90
I G P+YV DSVG
Sbjct: 507 ISGGPIYVSDSVGK 520
>gnl|CDD|236980 PRK11780, PRK11780, isoprenoid biosynthesis protein with
amidotransferase-like domain; Provisional.
Length = 217
Score = 27.4 bits (62), Expect = 1.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 26 PDILQLE--DHLSFESMKENR 44
PDI QL +HL+ E M E R
Sbjct: 41 PDIPQLHVINHLTGEEMGETR 61
>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate
transport and metabolism].
Length = 808
Score = 27.4 bits (61), Expect = 2.5
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 48 YELVIEINKENNLIDKEKCERG----AFMRSG-KIGGLPVYVR 85
Y LV+ + N LID E G I G PV++R
Sbjct: 261 YRLVVTLKDANTLIDAEALRIGFRTVEIKDGLLLINGKPVFIR 303
>gnl|CDD|131956 TIGR02910, sulfite_red_A, sulfite reductase, subunit A. Members of
this protein family include the A subunit, one of three
subunits, of the anaerobic sulfite reductase of
Salmonella, and close homologs from various Clostridum
species, where the three-gene neighborhood is preserved.
Two such gene clusters are found in Clostridium
perfringens, but it may be that these sets of genes
correspond to the distinct assimilatory and
dissimilatory forms as seen in Clostridium pasteurianum.
Note that any one of these enzymes may have secondary
substates such as NH2OH, SeO3(2-), and SO3(2-).
Heterologous expression of the anaerobic sulfite
reductase of Salmonella confers on Escherichia coli the
ability to produce hydrogen sulfide gas from sulfite
[Central intermediary metabolism, Sulfur metabolism].
Length = 334
Score = 26.7 bits (59), Expect = 3.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 36 SFE-----SMKENRATNYELVIEINKENNLID 62
SFE SM N+ Y + ++E L+D
Sbjct: 137 SFENCFCVSMGTNKTDCYSAAVRFSEEGVLVD 168
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (encoded by the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and -2. SMCT1(encoded by
the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (encoded by the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 522
Score = 26.3 bits (59), Expect = 4.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 80 LPVYVRDSVGHISNLPG 96
LP +V D +GH+ LPG
Sbjct: 311 LPYFVMDILGHLPGLPG 327
>gnl|CDD|215532 PLN02982, PLN02982, galactinol-raffinose
galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl
compounds.
Length = 865
Score = 26.3 bits (58), Expect = 4.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 74 SGKIGGLPVYVRDSVGH 90
S I G PVYV DSVG
Sbjct: 609 SRAICGGPVYVSDSVGG 625
>gnl|CDD|220137 pfam09194, Endonuc-BsobI, Restriction endonuclease BsobI. Members
of this family of prokaryotic restriction endonucleases
recognise the double-stranded sequence CYCGRG (where Y =
T/C, and R = A/G) and cleave after C-1. They catalyze
the endonucleolytic cleavage of DNA to give specific
double-stranded fragments with terminal 5'-phosphates.
Length = 316
Score = 26.4 bits (58), Expect = 5.2
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 14 RTGKFLDHPLSTPDILQLEDHLSFESMKENRATNYELVIEINKEN 58
R +++D P ++ LS+ + + R Y + + + K+N
Sbjct: 159 RDKQWMDKPEDDYELELFLRGLSWTNNGKPRTLMYNITVPLVKKN 203
>gnl|CDD|237890 PRK15055, PRK15055, anaerobic sulfite reductase subunit A;
Provisional.
Length = 344
Score = 25.7 bits (57), Expect = 8.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 36 SFE-----SMKENRATNYELVIEINKENNLID 62
SFE SM N+ NY + +++ L+D
Sbjct: 138 SFENCFCVSMGTNKTDNYSAAVRFDEDGVLVD 169
>gnl|CDD|233940 TIGR02583, DevR_archaea, CRISPR-associated protein Cas7/Csa2,
subtype I-A/APERN. CRISPR is a term for Clustered
Regularly Interspaced Short Palidromic Repeats. A number
of protein families appear only in association with
these repeats and are designated Cas (CRISPR associated)
proteins. This model represents one such family,
typified by MJ0381 of Methanococcus jannaschii. This
archaeal clade is a member of the DevR family
(TIGR01875) which includes the DevR protein of
Myxococcus xanthus, a protein whose expression appears
to regulated through a number of means, including both
location and autorepression; DevR mutants are incapable
of fruiting body development. This subfamily is found in
a CRISPR/Cas locus we designate APERN, so the family is
designated Csa2, for CRISPR/Cas Subtype Protein 2
[Mobile and extrachromosomal element functions, Other].
Length = 285
Score = 25.5 bits (56), Expect = 9.7
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 52 IEINKENNLIDKEKCERGAFMRSG-------KIGGLPVYVRD 86
+EI K+ L E C+RG F++ G K G P D
Sbjct: 62 VEIAKKLGLPVNELCKRGIFLKFGNGDTLKKKGSGEPKDPND 103
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.393
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,243,832
Number of extensions: 544732
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 26
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)