BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10125
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 77/112 (68%), Gaps = 12/112 (10%)
Query: 48 TSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107
T + K ++E AFSYYGP++ VW+ARNPPGF FVEFED RDAEDAVRG DG+ I G RVRV
Sbjct: 49 TGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV 108
Query: 108 EMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDC 159
E+S R R + R R RPF+P+D+CYECG +GHYA DC
Sbjct: 109 ELSTGMPRRSRFD---------RPPAR---RPFDPNDRCYECGEKGHYAYDC 148
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 12/60 (20%)
Query: 175 INGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDC 234
I G RVRVE+S R R + R R RPF+P+D+CYECG +GHYA DC
Sbjct: 101 ICGSRVRVELSTGMPRRSRFD---------RPPAR---RPFDPNDRCYECGEKGHYAYDC 148
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 81/126 (64%), Gaps = 12/126 (9%)
Query: 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVR 93
RY V + T + K ++E AFSYYGP++ VW+ARNPPGF FVEFED RDAEDAVR
Sbjct: 6 RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVR 65
Query: 94 GFDGREINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRG 153
G DG+ I G RVRVE+S R R + R R RPF+P+D+CYECG +G
Sbjct: 66 GLDGKVICGSRVRVELSTGMPRRSRFD---------RPPAR---RPFDPNDRCYECGEKG 113
Query: 154 HYARDC 159
HYA DC
Sbjct: 114 HYAYDC 119
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 12/60 (20%)
Query: 175 INGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDC 234
I G RVRVE+S R R + R R RPF+P+D+CYECG +GHYA DC
Sbjct: 72 ICGSRVRVELSTGMPRRSRFD---------RPPAR---RPFDPNDRCYECGEKGHYAYDC 119
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2
SV=1
Length = 235
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 81/126 (64%), Gaps = 12/126 (9%)
Query: 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVR 93
RY V + T + K ++E AFSYYGP++ VW+ARNPPGF FVEFED RDAEDAVR
Sbjct: 6 RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVR 65
Query: 94 GFDGREINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRG 153
G DG+ I G RVRVE+S R R + R R RPF+P+D+CYECG +G
Sbjct: 66 GLDGKVICGSRVRVELSTGMPRRSRFD---------RPPAR---RPFDPNDRCYECGEKG 113
Query: 154 HYARDC 159
HYA DC
Sbjct: 114 HYAYDC 119
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 12/60 (20%)
Query: 175 INGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDC 234
I G RVRVE+S R R + R R RPF+P+D+CYECG +GHYA DC
Sbjct: 72 ICGSRVRVELSTGMPRRSRFD---------RPPAR---RPFDPNDRCYECGEKGHYAYDC 119
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2 SV=3
Length = 144
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 48 TSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107
+S++K +IE AF+ YGP++NVWVARNPPGF FVEFEDRRDAEDA R DG G R+RV
Sbjct: 20 SSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRV 79
Query: 108 EM 109
EM
Sbjct: 80 EM 81
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 73/127 (57%), Gaps = 23/127 (18%)
Query: 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF 95
M +YV + T +IED F +G +++VWVAR PPGF F++F+DRRDAEDA+R
Sbjct: 1 MARVYVGNL--DPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDL 58
Query: 96 DGREINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHY 155
DG+ NG RVE+S + GR RSGG D KCYECG GH+
Sbjct: 59 DGK--NG--WRVELST-KAGSGRGRDRSGGS----------------DMKCYECGEPGHF 97
Query: 156 ARDCRSR 162
AR+CR R
Sbjct: 98 ARECRLR 104
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 206 GSVRARGRPFNPDDKCYECGGRGHYARDCRSR 237
GS R R R D KCYECG GH+AR+CR R
Sbjct: 73 GSGRGRDRSGGSDMKCYECGEPGHFARECRLR 104
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 60/83 (72%), Gaps = 3/83 (3%)
Query: 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGR 98
+YV + + K ++E AF YYGP+++VWVARNPPGF FVEFED RDA DAVR DGR
Sbjct: 12 VYVGNL--GNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 99 EINGRRVRVEMSNPQKMRGRSNG 121
+ G RVRVE+SN +K R R+ G
Sbjct: 70 TLCGCRVRVELSNGEK-RSRNRG 91
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 60/83 (72%), Gaps = 3/83 (3%)
Query: 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGR 98
+YV + + K ++E AF YYGP+++VWVARNPPGF FVEFED RDA DAVR DGR
Sbjct: 12 VYVGNL--GNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 99 EINGRRVRVEMSNPQKMRGRSNG 121
+ G RVRVE+SN +K R R+ G
Sbjct: 70 TLCGCRVRVELSNGEK-RSRNRG 91
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3 PE=2
SV=1
Length = 164
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 60/83 (72%), Gaps = 3/83 (3%)
Query: 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGR 98
+YV + + K ++E AF YYGP+++VWVARNPPGF FVEFED RDA DAVR DGR
Sbjct: 12 VYVGNL--GNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 99 EINGRRVRVEMSNPQKMRGRSNG 121
+ G RVRVE+SN +K R R+ G
Sbjct: 70 TLCGCRVRVELSNGEK-RSRNRG 91
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 20/112 (17%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
T ++ED F +G +++VWVAR PPGF F++F+DRRDA+DA+R DG+ NG RVE+S
Sbjct: 14 TARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDGK--NG--WRVELS 69
Query: 111 NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSR 162
R S+GR G DR Y S + KCYECG GH+AR+CR R
Sbjct: 70 -----RNASSGRGGRDR-YGSS----------ESKCYECGETGHFARECRLR 105
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 16/57 (28%)
Query: 181 RVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSR 237
RVE+S R S+GR G DR Y S + KCYECG GH+AR+CR R
Sbjct: 65 RVELS-----RNASSGRGGRDR-YGSS----------ESKCYECGETGHFARECRLR 105
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 70/127 (55%), Gaps = 23/127 (18%)
Query: 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF 95
M +YV + T ++ED F +G +++VWVAR PPGF F++F+D+RDAEDA+R
Sbjct: 1 MARLYVGNL--DPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDL 58
Query: 96 DGREINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHY 155
DG+ NG RVE+S RG R R + KCYECG GH+
Sbjct: 59 DGK--NG--WRVELSRNSSSRG-----------------GRDRHGGSEMKCYECGETGHF 97
Query: 156 ARDCRSR 162
AR+CR R
Sbjct: 98 ARECRLR 104
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis
elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 46/66 (69%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
+ +T +++E+ F +G I+ VWVAR PPGF FVE++D RDAEDAVR DG I G R
Sbjct: 10 LPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRA 69
Query: 106 RVEMSN 111
RVE+S
Sbjct: 70 RVELST 75
>sp|O81127|RZP21_ARATH Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana
GN=RSZ21 PE=1 SV=1
Length = 187
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 18/109 (16%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
T+ ++ED F +G ++NVWVAR PPG+ F+EF+D RDA DA+ D + NG RVE+S
Sbjct: 14 TERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK--NG--WRVELS 69
Query: 111 NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDC 159
+ K G G D KCYECG GH+AR+C
Sbjct: 70 HKDKGGRGGGGGRRGG--------------IEDSKCYECGELGHFAREC 104
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana
GN=RSZ22 PE=1 SV=1
Length = 200
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
T+ ++ED F +G +++VWVAR PPG+ F++FED RDA DA+R DG+ NG RV
Sbjct: 14 TERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK--NGWRVE---- 67
Query: 111 NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDC 159
Q G G G RG D KCYECG GH+AR+C
Sbjct: 68 --QSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFAREC 114
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 218 DDKCYECGGRGHYARDC 234
D KCYECG GH+AR+C
Sbjct: 98 DLKCYECGETGHFAREC 114
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana
GN=RSZ22A PE=1 SV=1
Length = 196
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 11/109 (10%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
T+ ++ED F +G I++VWVAR PPG+ F++FED RDA DA+R DG+ NG RVE S
Sbjct: 14 TERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK--NG--WRVEQS 69
Query: 111 NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDC 159
+ + G G GG G RG + D KCYECG GH+AR+C
Sbjct: 70 HNRGGGGGRGGGRGGGDGGRGRGGS-------DLKCYECGESGHFAREC 111
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 218 DDKCYECGGRGHYARDC 234
D KCYECG GH+AR+C
Sbjct: 95 DLKCYECGESGHFAREC 111
>sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila melanogaster GN=Rsf1 PE=1
SV=1
Length = 197
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 52 KEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
K+D+E F+ YG + +VW+A NPPGF FVEFE R DAE A +G E+ G ++RVE+S
Sbjct: 20 KDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVEIS 78
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 54 DIEDAFSYYGPIK--NVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111
++ED FS YGP+ ++ V PPG+ FVEF+D RDAEDA+ G DG + +G R+RVE+++
Sbjct: 22 EVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAH 81
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana
GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 19/121 (15%)
Query: 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGR 98
+YV + S+ + D+E FS YG +++V + R+ + FVEF D RDA+DA DGR
Sbjct: 13 LYVGRL--SSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLDGR 67
Query: 99 EINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARD 158
+ +G R+ VE S R R D G RG GR C+ CG GH+ARD
Sbjct: 68 DFDGSRITVEAS-------RGAPRGSRDNGSRGPPPGSGR-------CFNCGVDGHWARD 113
Query: 159 C 159
C
Sbjct: 114 C 114
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 52 KEDIEDAFSYYGPIKNVWVARN-PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
++++ED F YG IK V + P F FVEFED RDAEDAVR DG E +GRR+RVE +
Sbjct: 22 EKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 19/121 (15%)
Query: 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGR 98
+YV + S+ + D+E FS YG +++V + R+ + FVEF D RDA+DA DGR
Sbjct: 13 LYVGRL--SSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLDGR 67
Query: 99 EINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARD 158
+ +G R+ VE S R R D RG GR C+ CG GH+ARD
Sbjct: 68 DFDGSRITVEFS-------RGAPRGSRDFDSRGPPPGAGR-------CFNCGVDGHWARD 113
Query: 159 C 159
C
Sbjct: 114 C 114
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFD 96
+ + I ++ +++DIE F YG I++V + GFGFVEF+D+RDAEDAV +
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLN 57
Query: 97 GREINGRRVRVEMSNP 112
G+E+ G RV ++ S P
Sbjct: 58 GKELGGERVILDYSKP 73
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 53 EDIEDAFSYYGPIKNVWVA--RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+DIED F YG I+++ + R P F FVEFED RDAEDAV G DG + +G R+RVE
Sbjct: 30 KDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 53 EDIEDAFSYYGPIKNVWVA--RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+DIED F YG I+++ + R P F FVEFED RDAEDAV G DG + +G R+RVE
Sbjct: 30 KDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 53 EDIEDAFSYYGPIKNVWVA--RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+DIED F YG I+++ + R P F FVEFED RDAEDAV G DG + +G R+RVE
Sbjct: 30 KDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 53 EDIEDAFSYYGPIKNVWVA--RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+DIED F YG I+++ + R P F FVEFED RDAEDAV G DG + +G R+RVE
Sbjct: 30 KDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 53 EDIEDAFSYYGPIKNVWVA--RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+DIED F YG I+++ + R P F FVEFED RDAEDAV G DG + +G R+RVE
Sbjct: 30 KDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 53 EDIEDAFSYYGPIKNVWVA--RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+DIED F YG I+++ + R P F FVEFED RDAEDAV G DG + +G R+RVE
Sbjct: 30 KDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 53 EDIEDAFSYYGPIKNVWVA--RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+DIED F YG I+++ + R P F FVEFED RDAEDAV G DG + +G R+RVE
Sbjct: 30 KDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 32 IARYMLVIYVSIVL--CSTSSTKEDIEDAFSYYGPIKNVWV-----ARNPPGFGFVEFED 84
++RY+ S+ + + + ED+ F YGPI +V+V R P GF +V+FED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 85 RRDAEDAVRGFDGREINGRRVRVEMS-----NPQKMRGR 118
RDAEDA+ D + I GR++ ++ + P +M+ +
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 32 IARYMLVIYVSIVL--CSTSSTKEDIEDAFSYYGPIKNVWV-----ARNPPGFGFVEFED 84
++RY+ S+ + + + ED+ F YGPI +V+V R P GF +V+FED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 85 RRDAEDAVRGFDGREINGRRVRVEMS-----NPQKMRGR 118
RDAEDA+ D + I GR++ ++ + P +M+ +
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 53 EDIEDAFSYYGPIKNVWVA--RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+D+ED F YG I+++ + R P F FVEFED RDAEDAV G DG + +G R+RVE
Sbjct: 29 KDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 87
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 7/94 (7%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG 97
++ V I ++ D+E F YG + +V + +N GFGFV+F+D+RDA+DAV +G
Sbjct: 1 MVRVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQDQRDADDAVHDLNG 57
Query: 98 REINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRG 131
+E+ G RV +E P++ G + RSG G+RG
Sbjct: 58 KELCGERVILEF--PRRKVGYNEERSGS--GFRG 87
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 21/121 (17%)
Query: 32 IARYMLVIYVSIVL--CSTSSTKEDIEDAFSYYGPIKNVWV-----ARNPPGFGFVEFED 84
++RY S+ + + ++ ED+ F YGPI +V++ R P GF +V+FED
Sbjct: 1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
Query: 85 RRDAEDAVRGFDGREINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGR-PFNPD 143
RDAEDA+ + + + GR++ ++ + GDR G ++++ R P +P
Sbjct: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQ-------------GDRKTPGQMKSKERHPCSPS 107
Query: 144 D 144
D
Sbjct: 108 D 108
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 53 EDIEDAFSYYGPIKNVWVA--RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+D+ED F YG I+++ + R P F FVEFED RDAEDAV DG + +G R+RVE
Sbjct: 29 KDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEF 87
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPP-----GFGFVEFEDRRDAED 90
M+ + V + TS + + F YG + +V++ R P GF FV F DRRDA+D
Sbjct: 13 MITLKVDNLTYRTSP--DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70
Query: 91 AVRGFDGREINGRRVRVEMS 110
A DG E++GR +RV+++
Sbjct: 71 AEAAMDGAELDGRELRVQVA 90
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI 100
S + ++ +E FS YG I V V ++ GFGFV FE+ DA+DA+ +G+ +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 101 NGRRVRVEMSNPQKMRGRSNGRSGGDRGYRG 131
+GR++RV+ + S+ RS RGYRG
Sbjct: 73 DGRQIRVDQAGKS-----SDNRS---RGYRG 95
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI 100
S + ++ +E FS YG I V V ++ GFGFV FE+ DA+DA+ +G+ +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 101 NGRRVRVEMSNPQKMRGRSNGRSGGDRGYRG 131
+GR++RV+ + S+ RS RGYRG
Sbjct: 73 DGRQIRVDQAGKS-----SDNRS---RGYRG 95
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 25/120 (20%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
S + T +++ F YGP+ + ++ + FV E DA +A+RG D E G+R+
Sbjct: 86 SPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 142
Query: 107 VEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDK-CYECGGRGHYARDCRSRRSG 165
V++S + R R P D CY CG GH++++C RSG
Sbjct: 143 VQLS---------------------TSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSG 181
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 32/196 (16%)
Query: 50 STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+T+++I F YG + + +N +GFV ED+ AEDA+R +++G + VE
Sbjct: 13 ATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 69
Query: 110 S-NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSG 168
S N K + + + +RA+ + P EC YA R
Sbjct: 70 SKNKSKASTKLHVGNISPTCTNQELRAKFEEYGP---VIECDIVKDYAFVHMERAEDAVE 126
Query: 169 R---PELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDK-CYEC 224
+ + G+R+ V++S + R R P D CY C
Sbjct: 127 AIRGLDNTEFQGKRMHVQLS---------------------TSRLRTAPGMGDQSGCYRC 165
Query: 225 GGRGHYARDCRSRRSG 240
G GH++++C RSG
Sbjct: 166 GKEGHWSKECPIDRSG 181
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWV-----ARNPPGFGFVEFEDRRDAEDAV 92
+YVS + S T D+ FS YG + V + +R G FV F D+ A++ V
Sbjct: 11 TVYVSNLPFSL--TNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCV 68
Query: 93 RGFDGREINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGR 152
RG + +++ GR ++ + + NGR + R R + +CYECG
Sbjct: 69 RGLNNKQLFGRAIKASI-------AKDNGR--------ATEFIRRRNYTDKSRCYECGDT 113
Query: 153 GHYARDC 159
GH + C
Sbjct: 114 GHLSYAC 120
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI 100
S + ++ +E FS YG I V V ++ GFGFV FE+ DA+DA+ +G+ +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 101 NGRRVRVEMSNPQKMRGRSNGRSGGDRGYRG 131
+GR++RV+ + S+ RS RGYRG
Sbjct: 73 DGRQIRVDQAGKS-----SDNRS---RGYRG 95
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI 100
S + ++ +E FS YG I V V ++ GFGFV FE+ DA+DA+ +G+ +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 101 NGRRVRVEMSNPQKMRGRSNGRSGGDRGYRG 131
+GR++RV+ + S+ RS RGYRG
Sbjct: 73 DGRQIRVDQAGKS-----SDNRS---RGYRG 95
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI 100
S + ++ +E FS YG I V V ++ GFGFV FE+ DA+DA+ +G+ +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 101 NGRRVRVEMSNPQKMRGRSNGRSGGDRGYRG 131
+GR++RV+ + S+ RS RGYRG
Sbjct: 73 DGRQIRVDQAGKS-----SDNRS---RGYRG 95
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 25/120 (20%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
S + T +++ F YGP+ + ++ + FV E DA +A+RG D E G+R+
Sbjct: 86 SPTCTNKELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 142
Query: 107 VEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDK-CYECGGRGHYARDCRSRRSG 165
V++S + R R P D CY CG GH++++C RSG
Sbjct: 143 VQLS---------------------TSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRSG 181
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 32/196 (16%)
Query: 50 STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+T+++I F YG + + +N +GFV ED+ AEDA+R +++G + VE
Sbjct: 13 ATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 69
Query: 110 S-NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSG 168
S N K + + + +RA+ + P EC YA R
Sbjct: 70 SKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGP---VIECDIVKDYAFVHMERAEDAVE 126
Query: 169 R---PELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDK-CYEC 224
+ + G+R+ V++S + R R P D CY C
Sbjct: 127 AIRGLDNTEFQGKRMHVQLS---------------------TSRLRTAPGMGDQSGCYRC 165
Query: 225 GGRGHYARDCRSRRSG 240
G GH++++C RSG
Sbjct: 166 GKEGHWSKECPVDRSG 181
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 50 STKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRR 104
+T+E +E FS YG + V V ++ GFGFV FE+ DA+DA+ +G+ ++GR+
Sbjct: 17 TTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQ 76
Query: 105 VRVEMS 110
+RV+ +
Sbjct: 77 IRVDQA 82
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 41 VSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREI 100
V I + ++ ++D+E F YG I+++ + R GFGFVEFED RDA+DAV DG+E+
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKEL 62
Query: 101 NGRRVRVE 108
RV +E
Sbjct: 63 CSERVTIE 70
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
S+ + +D++D G + R G VEF D ++A+ G+EINGR++
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 106 RV 107
++
Sbjct: 175 KL 176
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 41 VSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREI 100
V I + ++ ++D+E F YG I+++ + R GFGFVEFED RDA+DAV DG+E+
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKEL 62
Query: 101 NGRRVRVE 108
RV +E
Sbjct: 63 CSERVTIE 70
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
S+ + +D++D G + R G VEF D ++A+ G+EINGR++
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 106 RV 107
++
Sbjct: 175 KL 176
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 41 VSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREI 100
V I + ++ ++D+E F YG I+++ + R GFGFVEFED RDA+DAV DG+E+
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKEL 62
Query: 101 NGRRVRVE 108
RV +E
Sbjct: 63 CSERVTIE 70
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
S+ + +D++D G + R G VEF D ++A+ G+EINGR++
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 106 RV 107
++
Sbjct: 175 KL 176
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
S + T +++ F YGP+ + ++ + FV E DA +A+RG D E G+R+
Sbjct: 86 SPTCTNKELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 142
Query: 107 VEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSG 165
V++S + G G CY CG GH++++C RSG
Sbjct: 143 VQLSTSRLRTAPGMGDQSG--------------------CYRCGKEGHWSKECPIDRSG 181
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 30/195 (15%)
Query: 50 STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+T+++I F YG + + +N +GFV ED+ AEDA+R +++G + VE
Sbjct: 13 ATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 69
Query: 110 S-NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSG 168
S N K + + + +RA+ + P EC YA R
Sbjct: 70 SKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGP---VIECDIVKDYAFVHMERAEDAVE 126
Query: 169 R---PELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECG 225
+ + G+R+ V++S + G G CY CG
Sbjct: 127 AIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG--------------------CYRCG 166
Query: 226 GRGHYARDCRSRRSG 240
GH++++C RSG
Sbjct: 167 KEGHWSKECPIDRSG 181
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
S + T +++ F YGP+ + ++ + FV E DA +A+RG D E G+R+
Sbjct: 86 SPTCTNKELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 142
Query: 107 VEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSG 165
V++S + G G CY CG GH++++C RSG
Sbjct: 143 VQLSTSRLRTAPGMGDQSG--------------------CYRCGKEGHWSKECPIDRSG 181
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 30/195 (15%)
Query: 50 STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+T+++I F YG + + +N +GFV ED+ AEDA+R +++G + VE
Sbjct: 13 ATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 69
Query: 110 S-NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSG 168
S N K + + + +RA+ + P EC YA R
Sbjct: 70 SKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGP---VIECDIVKDYAFVHMERAEDAVE 126
Query: 169 R---PELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECG 225
+ + G+R+ V++S + G G CY CG
Sbjct: 127 AIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG--------------------CYRCG 166
Query: 226 GRGHYARDCRSRRSG 240
GH++++C RSG
Sbjct: 167 KEGHWSKECPIDRSG 181
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
S + T +++ F YGP+ + ++ + FV E DA +A+RG D E G+R+
Sbjct: 85 ISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTEFQGKRM 141
Query: 106 RVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSG 165
V++S + G G CY CG GH++++C R+G
Sbjct: 142 HVQLSTSRLRTAPGMGDQSG--------------------CYRCGKEGHWSKECPVDRTG 181
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 30/195 (15%)
Query: 50 STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+T+++I F YG + + +N +GFV ED+ AEDA+R +++G + VE
Sbjct: 13 ATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 69
Query: 110 S-NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSG 168
S N K + + + +RA+ + P EC YA R
Sbjct: 70 SKNKSKASTKLHVGNISPTCTNQELRAKFEEYGP---VIECDIVKDYAFVHMERAEDAVE 126
Query: 169 R---PELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECG 225
+ + G+R+ V++S + G G CY CG
Sbjct: 127 AIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG--------------------CYRCG 166
Query: 226 GRGHYARDCRSRRSG 240
GH++++C R+G
Sbjct: 167 KEGHWSKECPVDRTG 181
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 46 CSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
S + T +++ F YGP+ + ++ + FV E DA +A+RG D E G+R+
Sbjct: 85 ISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTEFQGKRM 141
Query: 106 RVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSG 165
V++S + G G CY CG GH++++C R+G
Sbjct: 142 HVQLSTSRLRTAPGMGDQSG--------------------CYRCGKEGHWSKECPVDRTG 181
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 30/195 (15%)
Query: 50 STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
+T+++I F YG + + +N +GFV ED+ AEDA+R +++G + VE
Sbjct: 13 ATEQEIRSLFEQYGKVLECDIIKN---YGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 69
Query: 110 S-NPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSG 168
S N K + + + +RA+ + P EC YA R
Sbjct: 70 SKNKSKASTKLHVGNISPTCTNQELRAKFEEYGP---VIECDIVKDYAFVHMERAEDAVE 126
Query: 169 R---PELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECG 225
+ + G+R+ V++S + G G CY CG
Sbjct: 127 AIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG--------------------CYRCG 166
Query: 226 GRGHYARDCRSRRSG 240
GH++++C R+G
Sbjct: 167 KEGHWSKECPVDRTG 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,843,602
Number of Sequences: 539616
Number of extensions: 6087092
Number of successful extensions: 17279
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 450
Number of HSP's that attempted gapping in prelim test: 14686
Number of HSP's gapped (non-prelim): 2438
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)