Query psy10125
Match_columns 312
No_of_seqs 351 out of 2205
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:31:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0109|consensus 99.8 6.1E-21 1.3E-25 170.9 10.5 181 39-242 3-184 (346)
2 KOG0107|consensus 99.8 2.4E-18 5.1E-23 144.3 16.1 111 36-161 8-118 (195)
3 PLN03134 glycine-rich RNA-bind 99.7 1.3E-16 2.8E-21 133.6 15.3 83 34-116 30-117 (144)
4 KOG0109|consensus 99.6 3.8E-15 8.2E-20 133.9 7.2 112 34-168 74-185 (346)
5 KOG0105|consensus 99.5 2.3E-13 5E-18 115.3 9.5 79 37-115 5-85 (241)
6 TIGR01659 sex-lethal sex-letha 99.4 1.8E-12 3.9E-17 123.3 13.5 79 37-115 192-277 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.1E-12 2.4E-17 124.5 11.5 76 39-114 270-350 (352)
8 PF00076 RRM_1: RNA recognitio 99.4 7.9E-13 1.7E-17 95.6 8.0 66 41-106 1-70 (70)
9 TIGR01659 sex-lethal sex-letha 99.4 1.6E-12 3.4E-17 123.7 10.2 79 35-113 104-187 (346)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2E-12 4.4E-17 122.7 11.0 77 38-114 3-84 (352)
11 KOG0126|consensus 99.4 1.2E-13 2.6E-18 116.8 2.2 108 5-112 1-114 (219)
12 KOG0121|consensus 99.4 1E-12 2.3E-17 105.2 7.2 80 33-112 31-115 (153)
13 KOG4207|consensus 99.4 1.9E-12 4.1E-17 111.5 9.1 81 34-114 9-94 (256)
14 KOG0113|consensus 99.4 5.2E-12 1.1E-16 114.1 11.7 87 36-122 99-190 (335)
15 PTZ00368 universal minicircle 99.4 2.4E-12 5.1E-17 108.3 8.7 91 143-237 27-122 (148)
16 PTZ00368 universal minicircle 99.4 1.3E-12 2.7E-17 110.0 7.0 91 143-236 52-147 (148)
17 KOG0122|consensus 99.3 3.7E-12 8.1E-17 112.3 9.2 77 37-113 188-269 (270)
18 TIGR01648 hnRNP-R-Q heterogene 99.3 4.3E-11 9.4E-16 120.0 17.2 76 38-116 233-310 (578)
19 PLN03120 nucleic acid binding 99.3 8.3E-12 1.8E-16 112.7 10.7 75 38-113 4-80 (260)
20 KOG0125|consensus 99.3 6E-12 1.3E-16 115.0 7.6 76 38-113 96-174 (376)
21 PF14259 RRM_6: RNA recognitio 99.3 2.7E-11 5.9E-16 88.2 8.8 66 41-106 1-70 (70)
22 KOG0149|consensus 99.3 1.1E-11 2.4E-16 108.9 7.2 76 36-112 10-90 (247)
23 PLN03213 repressor of silencin 99.3 2.2E-11 4.7E-16 116.5 9.5 75 38-112 10-87 (759)
24 smart00362 RRM_2 RNA recogniti 99.2 6.7E-11 1.5E-15 84.5 9.5 69 40-108 1-72 (72)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1E-10 2.2E-15 116.2 11.2 78 37-114 274-352 (481)
26 KOG0148|consensus 99.2 1.2E-10 2.7E-15 104.1 10.1 82 33-115 159-240 (321)
27 TIGR01645 half-pint poly-U bin 99.2 1.1E-10 2.4E-15 117.4 11.0 79 37-115 203-286 (612)
28 PLN03121 nucleic acid binding 99.2 1.9E-10 4E-15 102.5 10.2 74 38-112 5-80 (243)
29 KOG0111|consensus 99.2 2.9E-11 6.3E-16 105.2 4.7 82 35-116 7-93 (298)
30 KOG0117|consensus 99.1 4.9E-11 1.1E-15 113.0 6.3 74 39-115 260-333 (506)
31 TIGR01645 half-pint poly-U bin 99.1 1.7E-10 3.6E-15 116.2 10.4 76 36-111 105-185 (612)
32 TIGR01648 hnRNP-R-Q heterogene 99.1 2.1E-10 4.5E-15 115.2 10.9 76 35-110 55-135 (578)
33 cd00590 RRM RRM (RNA recogniti 99.1 4.8E-10 1E-14 80.4 9.7 70 40-109 1-74 (74)
34 TIGR01628 PABP-1234 polyadenyl 99.1 2.1E-10 4.6E-15 116.0 10.6 76 39-114 1-81 (562)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.1 3.9E-10 8.4E-15 112.4 11.7 78 37-114 294-376 (509)
36 TIGR01628 PABP-1234 polyadenyl 99.1 2.7E-10 5.7E-15 115.2 10.7 78 37-114 284-365 (562)
37 TIGR01622 SF-CC1 splicing fact 99.1 3.1E-10 6.7E-15 111.7 10.8 76 38-113 186-266 (457)
38 KOG0130|consensus 99.1 1.6E-10 3.4E-15 93.6 6.3 82 34-115 68-154 (170)
39 KOG0148|consensus 99.1 1.6E-10 3.5E-15 103.4 7.0 76 39-114 63-143 (321)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 4.2E-10 9.2E-15 111.8 10.8 76 38-114 2-79 (481)
41 smart00360 RRM RNA recognition 99.1 8.2E-10 1.8E-14 78.4 8.4 66 43-108 1-71 (71)
42 TIGR01622 SF-CC1 splicing fact 99.0 9.6E-10 2.1E-14 108.2 10.7 77 36-113 87-168 (457)
43 COG0724 RNA-binding proteins ( 99.0 1.3E-09 2.8E-14 97.2 10.1 75 38-112 115-194 (306)
44 PF13893 RRM_5: RNA recognitio 99.0 1.6E-09 3.5E-14 75.6 8.3 56 55-110 1-56 (56)
45 KOG0145|consensus 99.0 7.7E-10 1.7E-14 98.6 8.1 79 36-114 39-122 (360)
46 KOG0114|consensus 99.0 1.6E-09 3.4E-14 84.1 8.5 77 38-114 18-96 (124)
47 KOG0144|consensus 99.0 7.1E-10 1.5E-14 104.8 6.0 88 29-116 115-209 (510)
48 KOG0117|consensus 99.0 2.6E-09 5.7E-14 101.4 9.8 88 26-113 71-164 (506)
49 KOG0153|consensus 99.0 2.8E-09 6.1E-14 98.4 9.2 98 6-112 204-302 (377)
50 KOG0415|consensus 99.0 1.4E-09 3.1E-14 100.5 7.2 78 38-115 239-321 (479)
51 KOG0131|consensus 98.9 1.4E-09 3.1E-14 92.3 5.1 77 35-111 6-87 (203)
52 KOG0127|consensus 98.9 7E-09 1.5E-13 100.7 8.4 79 38-116 117-199 (678)
53 KOG0108|consensus 98.8 6E-09 1.3E-13 101.2 7.6 78 39-116 19-101 (435)
54 KOG0131|consensus 98.8 6E-09 1.3E-13 88.5 6.3 108 9-116 67-180 (203)
55 KOG0145|consensus 98.8 1.6E-08 3.4E-13 90.3 9.1 76 38-113 278-358 (360)
56 KOG0116|consensus 98.8 2.8E-08 6.1E-13 96.1 11.4 78 38-116 288-370 (419)
57 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.6E-08 3.4E-13 100.9 9.1 73 36-110 173-257 (509)
58 KOG0146|consensus 98.8 6.7E-09 1.5E-13 93.0 5.2 80 36-115 283-367 (371)
59 COG5082 AIR1 Arginine methyltr 98.8 4.9E-09 1.1E-13 90.0 3.5 81 143-240 60-142 (190)
60 KOG0132|consensus 98.7 2.4E-08 5.2E-13 100.3 8.2 79 36-115 419-497 (894)
61 KOG4206|consensus 98.7 3.8E-08 8.2E-13 86.4 7.5 78 38-115 9-92 (221)
62 KOG0124|consensus 98.7 1E-08 2.3E-13 95.2 4.1 75 37-111 112-191 (544)
63 KOG0106|consensus 98.7 2.1E-08 4.6E-13 88.5 5.6 74 39-115 2-75 (216)
64 smart00361 RRM_1 RNA recogniti 98.7 9E-08 2E-12 70.0 7.8 56 52-107 2-69 (70)
65 KOG0127|consensus 98.7 3.2E-08 6.9E-13 96.2 6.5 77 39-115 6-87 (678)
66 KOG0144|consensus 98.6 5E-08 1.1E-12 92.5 6.7 78 37-114 33-118 (510)
67 KOG4212|consensus 98.6 9.9E-08 2.1E-12 90.6 8.5 74 39-112 45-123 (608)
68 KOG0123|consensus 98.6 8.9E-08 1.9E-12 91.9 8.2 74 41-115 79-155 (369)
69 KOG0146|consensus 98.6 3.6E-08 7.9E-13 88.3 4.9 87 28-114 9-102 (371)
70 KOG0110|consensus 98.6 1.8E-07 3.9E-12 93.5 8.7 73 39-111 516-596 (725)
71 KOG0147|consensus 98.6 9.1E-08 2E-12 93.2 6.0 74 41-114 281-359 (549)
72 PF00098 zf-CCHC: Zinc knuckle 98.5 3.5E-08 7.5E-13 52.9 1.6 18 219-236 1-18 (18)
73 KOG4661|consensus 98.5 1.7E-07 3.6E-12 91.5 7.2 81 34-114 401-486 (940)
74 KOG4400|consensus 98.5 1.3E-07 2.9E-12 86.7 5.4 91 144-239 93-185 (261)
75 KOG1457|consensus 98.5 8E-07 1.7E-11 78.0 9.5 81 36-116 32-121 (284)
76 KOG4400|consensus 98.5 2.2E-07 4.9E-12 85.3 6.3 90 141-237 70-162 (261)
77 KOG0533|consensus 98.4 8.1E-07 1.8E-11 80.1 7.9 80 36-115 81-164 (243)
78 KOG4212|consensus 98.4 6.1E-07 1.3E-11 85.3 6.7 76 35-110 533-608 (608)
79 KOG0124|consensus 98.4 1E-06 2.2E-11 82.2 7.5 77 36-112 208-289 (544)
80 KOG4205|consensus 98.4 4.7E-07 1E-11 84.6 5.0 79 37-116 5-88 (311)
81 KOG0123|consensus 98.3 1.7E-06 3.6E-11 83.2 8.3 73 39-114 2-76 (369)
82 KOG0110|consensus 98.3 5E-07 1.1E-11 90.4 4.4 76 38-113 613-693 (725)
83 KOG4209|consensus 98.3 4.7E-06 1E-10 75.0 9.7 81 33-114 96-181 (231)
84 KOG4208|consensus 98.3 2.1E-06 4.6E-11 74.5 7.1 76 38-113 49-130 (214)
85 COG5082 AIR1 Arginine methyltr 98.3 1.2E-06 2.6E-11 75.4 5.1 76 146-240 100-176 (190)
86 KOG1548|consensus 98.2 4.4E-06 9.4E-11 77.6 7.9 82 34-115 130-223 (382)
87 KOG1995|consensus 98.2 2.5E-05 5.4E-10 73.0 12.8 81 35-115 63-156 (351)
88 KOG4205|consensus 98.2 2.5E-06 5.4E-11 79.7 6.1 78 37-115 96-178 (311)
89 KOG4660|consensus 98.2 1.1E-06 2.3E-11 86.0 3.4 71 36-106 73-143 (549)
90 KOG0151|consensus 98.0 1.1E-05 2.4E-10 80.9 6.7 80 35-114 171-258 (877)
91 KOG4454|consensus 98.0 2.3E-06 5.1E-11 74.9 1.6 75 37-112 8-86 (267)
92 KOG1190|consensus 97.8 0.00011 2.4E-09 69.7 8.5 78 38-115 297-375 (492)
93 PF04059 RRM_2: RNA recognitio 97.7 0.00029 6.4E-09 54.8 8.3 76 39-114 2-88 (97)
94 KOG4211|consensus 97.6 0.00025 5.3E-09 68.9 8.0 72 38-111 10-84 (510)
95 KOG1457|consensus 97.5 9.8E-05 2.1E-09 65.1 4.2 63 38-100 210-273 (284)
96 KOG0226|consensus 97.5 0.00014 3.1E-09 65.1 4.5 78 35-112 187-269 (290)
97 KOG4206|consensus 97.5 0.00055 1.2E-08 60.5 8.1 77 35-111 143-220 (221)
98 PF08777 RRM_3: RNA binding mo 97.4 0.00028 6.1E-09 55.9 5.0 70 40-110 3-77 (105)
99 COG5175 MOT2 Transcriptional r 97.4 0.00054 1.2E-08 63.7 7.0 82 31-112 107-202 (480)
100 PF11608 Limkain-b1: Limkain b 97.3 0.0013 2.8E-08 49.6 7.7 70 39-113 3-77 (90)
101 KOG0120|consensus 97.3 0.0002 4.3E-09 70.7 3.9 78 37-114 288-370 (500)
102 PF13696 zf-CCHC_2: Zinc knuck 97.2 0.00022 4.8E-09 43.6 2.2 21 217-237 7-27 (32)
103 PF00098 zf-CCHC: Zinc knuckle 97.2 0.00023 4.9E-09 38.1 2.0 17 145-161 2-18 (18)
104 KOG4211|consensus 97.1 0.00076 1.6E-08 65.6 5.7 73 37-110 102-179 (510)
105 KOG0106|consensus 97.1 0.00039 8.4E-09 61.7 2.9 68 37-107 98-165 (216)
106 KOG0105|consensus 97.0 0.0053 1.2E-07 52.9 9.2 69 39-109 116-186 (241)
107 KOG4210|consensus 97.0 0.00073 1.6E-08 62.8 4.1 78 38-116 184-267 (285)
108 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0028 6.1E-08 43.7 5.4 52 39-92 2-53 (53)
109 KOG0147|consensus 96.8 0.0023 5E-08 63.0 5.8 60 53-112 468-527 (549)
110 KOG1548|consensus 96.7 0.0066 1.4E-07 56.8 8.1 81 34-114 261-353 (382)
111 KOG0129|consensus 96.6 0.0037 8.1E-08 61.2 6.2 60 35-95 256-326 (520)
112 KOG1456|consensus 96.6 0.01 2.2E-07 56.2 8.3 77 37-113 286-363 (494)
113 KOG1190|consensus 96.6 0.0057 1.2E-07 58.4 6.7 77 36-112 412-490 (492)
114 PF13917 zf-CCHC_3: Zinc knuck 96.6 0.0017 3.7E-08 42.5 2.2 19 218-236 4-22 (42)
115 KOG1456|consensus 96.5 0.0094 2E-07 56.4 7.8 73 42-114 126-200 (494)
116 KOG4849|consensus 96.4 0.0024 5.1E-08 59.8 3.1 70 38-107 80-156 (498)
117 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.027 6E-07 44.1 8.3 71 38-110 6-89 (100)
118 PF08952 DUF1866: Domain of un 96.3 0.021 4.6E-07 47.5 7.8 57 54-114 52-108 (146)
119 KOG0335|consensus 96.2 0.0033 7.1E-08 61.8 3.1 56 219-277 4-65 (482)
120 KOG4307|consensus 96.1 0.018 3.9E-07 58.4 7.8 71 39-109 868-943 (944)
121 KOG2193|consensus 96.1 0.0051 1.1E-07 59.0 3.5 74 39-115 2-78 (584)
122 smart00343 ZnF_C2HC zinc finge 96.0 0.0028 6.2E-08 36.9 1.0 18 220-237 1-18 (26)
123 KOG0120|consensus 95.7 0.03 6.5E-07 55.6 7.3 58 55-112 426-491 (500)
124 KOG1365|consensus 95.6 0.012 2.7E-07 55.8 3.7 81 31-111 273-360 (508)
125 KOG1855|consensus 95.5 0.013 2.9E-07 56.2 3.9 64 36-99 229-310 (484)
126 KOG0112|consensus 95.4 0.02 4.3E-07 59.6 5.0 78 35-113 452-531 (975)
127 KOG0129|consensus 95.2 0.05 1.1E-06 53.5 6.8 60 35-94 367-432 (520)
128 KOG2314|consensus 95.0 0.047 1E-06 54.3 5.7 75 38-112 58-143 (698)
129 KOG2202|consensus 94.9 0.012 2.7E-07 53.0 1.6 60 53-112 83-147 (260)
130 KOG3152|consensus 94.8 0.02 4.4E-07 51.6 2.6 68 37-104 73-157 (278)
131 PF10309 DUF2414: Protein of u 94.7 0.21 4.5E-06 35.6 7.0 53 39-95 6-62 (62)
132 PF08675 RNA_bind: RNA binding 94.3 0.22 4.8E-06 37.6 6.8 56 37-96 8-63 (87)
133 KOG0112|consensus 93.7 0.017 3.6E-07 60.2 -0.4 78 33-110 367-448 (975)
134 KOG0128|consensus 93.5 0.036 7.8E-07 57.5 1.6 76 38-113 736-815 (881)
135 KOG0115|consensus 93.3 0.083 1.8E-06 47.8 3.5 66 31-96 24-93 (275)
136 PF14787 zf-CCHC_5: GAG-polypr 93.3 0.068 1.5E-06 33.5 2.0 22 219-240 3-24 (36)
137 KOG4676|consensus 93.1 0.13 2.8E-06 49.1 4.6 68 40-108 9-84 (479)
138 PRK11634 ATP-dependent RNA hel 93.1 1.5 3.3E-05 45.3 12.8 72 38-113 486-563 (629)
139 COG5222 Uncharacterized conser 93.1 0.06 1.3E-06 49.6 2.2 27 214-240 172-198 (427)
140 KOG4307|consensus 92.9 0.24 5.2E-06 50.6 6.3 71 39-111 3-75 (944)
141 KOG0119|consensus 92.9 0.065 1.4E-06 52.6 2.3 42 172-237 263-304 (554)
142 KOG1996|consensus 92.8 0.36 7.8E-06 44.6 6.8 59 52-110 300-364 (378)
143 KOG1365|consensus 92.4 0.38 8.3E-06 46.0 6.6 65 39-104 162-234 (508)
144 KOG2416|consensus 92.4 0.11 2.4E-06 52.0 3.2 78 34-112 440-521 (718)
145 PF13696 zf-CCHC_2: Zinc knuck 92.0 0.087 1.9E-06 32.3 1.3 20 143-162 8-27 (32)
146 PF03880 DbpA: DbpA RNA bindin 91.7 0.93 2E-05 33.2 6.8 67 40-110 2-74 (74)
147 KOG2068|consensus 91.4 0.068 1.5E-06 50.1 0.5 81 33-113 72-163 (327)
148 PF11767 SET_assoc: Histone ly 90.9 1.2 2.7E-05 32.1 6.5 55 49-107 11-65 (66)
149 KOG0128|consensus 90.1 0.034 7.4E-07 57.6 -2.9 68 38-105 667-739 (881)
150 PF04847 Calcipressin: Calcipr 90.0 1.4 3.1E-05 38.3 7.5 63 51-114 8-72 (184)
151 PF03467 Smg4_UPF3: Smg-4/UPF3 90.0 0.53 1.1E-05 40.7 4.8 76 37-112 6-97 (176)
152 PF14392 zf-CCHC_4: Zinc knuck 89.8 0.13 2.7E-06 34.8 0.6 18 219-236 32-49 (49)
153 PF15288 zf-CCHC_6: Zinc knuck 89.7 0.17 3.7E-06 32.6 1.1 22 219-240 2-25 (40)
154 KOG0119|consensus 89.6 0.15 3.3E-06 50.0 1.2 43 144-189 262-304 (554)
155 PF15023 DUF4523: Protein of u 89.6 1.6 3.6E-05 36.3 7.0 71 36-109 84-158 (166)
156 KOG0107|consensus 89.3 0.42 9.1E-06 41.0 3.5 54 169-237 66-119 (195)
157 PF13917 zf-CCHC_3: Zinc knuck 88.6 0.31 6.6E-06 31.9 1.7 19 143-161 4-22 (42)
158 KOG2591|consensus 87.4 0.92 2E-05 45.4 5.0 68 36-105 173-244 (684)
159 smart00343 ZnF_C2HC zinc finge 85.7 0.44 9.5E-06 27.5 1.1 16 146-161 2-17 (26)
160 PF14787 zf-CCHC_5: GAG-polypr 84.1 0.62 1.3E-05 29.3 1.3 19 144-162 3-21 (36)
161 KOG2253|consensus 84.0 0.57 1.2E-05 47.7 1.7 73 33-109 35-107 (668)
162 KOG2135|consensus 82.8 0.95 2.1E-05 44.4 2.7 72 41-114 375-447 (526)
163 KOG4285|consensus 82.7 4.8 0.0001 37.6 6.9 62 40-104 199-260 (350)
164 PF07576 BRAP2: BRCA1-associat 81.2 13 0.00028 29.6 8.2 63 40-102 15-81 (110)
165 KOG4660|consensus 76.7 5.2 0.00011 40.1 5.6 78 38-115 388-475 (549)
166 KOG4574|consensus 74.0 2.5 5.5E-05 44.4 2.7 78 38-116 298-377 (1007)
167 KOG4410|consensus 71.3 5.5 0.00012 36.9 4.0 48 38-86 330-378 (396)
168 KOG4210|consensus 67.7 2.8 6E-05 39.1 1.3 76 37-112 87-167 (285)
169 KOG2318|consensus 61.9 39 0.00085 34.4 8.1 74 36-109 172-302 (650)
170 PF14392 zf-CCHC_4: Zinc knuck 61.5 3.8 8.2E-05 27.5 0.8 16 145-160 33-48 (49)
171 KOG0804|consensus 59.7 24 0.00052 34.8 6.0 65 38-102 74-142 (493)
172 COG5222 Uncharacterized conser 59.2 5.8 0.00013 36.9 1.7 23 142-164 175-197 (427)
173 KOG0314|consensus 59.1 23 0.00049 35.1 5.9 67 145-240 114-180 (448)
174 KOG2044|consensus 53.3 7 0.00015 41.0 1.4 22 218-239 260-281 (931)
175 COG0722 AroG 3-deoxy-D-arabino 49.4 6.5 0.00014 37.1 0.4 11 301-311 55-65 (351)
176 KOG3116|consensus 46.1 5.5 0.00012 33.3 -0.5 22 218-239 27-48 (177)
177 KOG4483|consensus 45.2 66 0.0014 31.4 6.4 55 37-93 390-445 (528)
178 KOG4676|consensus 43.6 9.5 0.0002 36.9 0.6 72 31-105 45-122 (479)
179 KOG2193|consensus 42.8 1.1 2.4E-05 43.5 -5.8 76 37-112 79-156 (584)
180 KOG2673|consensus 42.3 13 0.00029 36.5 1.4 20 221-240 131-150 (485)
181 COG5179 TAF1 Transcription ini 39.3 14 0.00029 38.0 0.9 25 217-241 936-962 (968)
182 PF12353 eIF3g: Eukaryotic tra 37.3 17 0.00036 29.7 1.0 20 218-238 106-125 (128)
183 KOG2560|consensus 33.9 10 0.00023 37.3 -0.8 21 218-238 112-132 (529)
184 PF03468 XS: XS domain; Inter 29.6 54 0.0012 26.2 2.8 43 50-92 29-74 (116)
185 KOG4008|consensus 28.3 43 0.00092 30.3 2.1 37 33-69 35-71 (261)
186 PF00403 HMA: Heavy-metal-asso 27.6 2E+02 0.0042 19.4 6.3 54 40-94 1-58 (62)
187 PF03439 Spt5-NGN: Early trans 26.8 1.5E+02 0.0032 22.1 4.6 36 64-99 33-68 (84)
188 KOG3070|consensus 25.6 1E+02 0.0023 27.8 4.2 21 217-237 198-218 (235)
189 COG5353 Uncharacterized protei 25.2 2.5E+02 0.0053 23.7 5.9 53 35-87 84-154 (161)
190 COG4009 Uncharacterized protei 23.4 57 0.0012 24.4 1.7 39 26-64 36-74 (88)
191 PF15513 DUF4651: Domain of un 22.0 1E+02 0.0023 21.9 2.7 19 53-71 9-27 (62)
192 TIGR00034 aroFGH phospho-2-deh 21.1 34 0.00074 32.7 0.2 11 301-311 50-60 (344)
193 PRK12822 phospho-2-dehydro-3-d 20.9 35 0.00076 32.8 0.2 12 301-312 55-66 (356)
194 KOG4019|consensus 20.8 81 0.0018 27.4 2.4 74 38-112 10-89 (193)
195 COG2608 CopZ Copper chaperone 20.7 3.2E+02 0.0069 19.4 5.3 47 38-85 3-49 (71)
196 KOG1295|consensus 20.3 1.4E+02 0.0031 28.8 4.2 64 37-100 6-77 (376)
No 1
>KOG0109|consensus
Probab=99.84 E-value=6.1e-21 Score=170.88 Aligned_cols=181 Identities=21% Similarity=0.386 Sum_probs=144.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCCCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKMRGR 118 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~~~~ 118 (312)
.+|||+|||..+++.+|+.+|++||+|++++|+ |.|+||+.++..+++.||..|++..|.|..|+|+-++.+.....
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~st 79 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKAST 79 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCcc
Confidence 579999999999999999999999999999999 66999999999999999999999999999999999998855444
Q ss_pred CCCCCCC-CCCCCCCccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcccCCCCCCC
Q psy10125 119 SNGRSGG-DRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMRGRSNGR 197 (312)
Q Consensus 119 ~~g~~gG-~~g~~g~~r~~g~~~~~~~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~g~~~g~ 197 (312)
..+.++- ........|.....+++...|..-...+.+..+|.++....+.++++...-|++-|+..+.++-+-..+
T Consensus 80 kl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtapg--- 156 (346)
T KOG0109|consen 80 KLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPG--- 156 (346)
T ss_pred ccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCCC---
Confidence 4443332 233344556666777776666666666666667777666666777888999999999988876543322
Q ss_pred CCCCCCCCCCccCCCCCCCCCccccccCCcCccccCCCCCCCCCC
Q psy10125 198 SGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGG 242 (312)
Q Consensus 198 ~g~~~G~~g~~~~~~~~~~~~~~C~~Cg~~GH~ar~Cp~~~~~~~ 242 (312)
++....||+||++|||+++||.+..+..
T Consensus 157 -----------------mgDq~~cyrcGkeghwskEcP~~~~~rv 184 (346)
T KOG0109|consen 157 -----------------MGDQSGCYRCGKEGHWSKECPVDRTGRV 184 (346)
T ss_pred -----------------CCCHHHheeccccccccccCCccCCCcc
Confidence 2234569999999999999999988753
No 2
>KOG0107|consensus
Probab=99.80 E-value=2.4e-18 Score=144.28 Aligned_cols=111 Identities=50% Similarity=0.875 Sum_probs=94.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKM 115 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 115 (312)
...++|||+||+..+++.||+.+|..||.|..|+|-..+.|||||+|+++.+|+.|+..|++..|.|..|+|+++...+.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCccccCCCCCCCCcCCCC
Q psy10125 116 RGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRS 161 (312)
Q Consensus 116 ~~~~~g~~gG~~g~~g~~r~~g~~~~~~~~c~~Cg~~Gh~a~~Cp~ 161 (312)
....++.. +++ ....|+.||+.||+.+.|.+
T Consensus 88 ~~r~gg~~--------~~~-------g~~~~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 88 GSRRGGSR--------PPR-------GRGFCYRCGERGHIGRNCKD 118 (195)
T ss_pred ccccCCCC--------Ccc-------cccccccCCCcccccccccc
Confidence 43322111 111 11229999999999999876
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=1.3e-16 Score=133.61 Aligned_cols=83 Identities=30% Similarity=0.496 Sum_probs=75.8
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
....+++|||+||++.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..|.++.|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3455789999999999999999999999999999999864 58999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy10125 109 MSNPQKMR 116 (312)
Q Consensus 109 ~a~~~~~~ 116 (312)
++.+++..
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99876654
No 4
>KOG0109|consensus
Probab=99.57 E-value=3.8e-15 Score=133.86 Aligned_cols=112 Identities=26% Similarity=0.602 Sum_probs=97.5
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
+.+.+++|+|+||.+.+|.+||+..|.+||.|.+++|+ ++|+||.|...++|..|++.|++.++.|++++|+++..+
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 45678999999999999999999999999999999999 779999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCC
Q psy10125 114 KMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSG 168 (312)
Q Consensus 114 ~~~~~~~g~~gG~~g~~g~~r~~g~~~~~~~~c~~Cg~~Gh~a~~Cp~~~~~~~g 168 (312)
-+.... -+....||+||+.|||+.+||.+..++..
T Consensus 151 lrtapg--------------------mgDq~~cyrcGkeghwskEcP~~~~~rva 185 (346)
T KOG0109|consen 151 LRTAPG--------------------MGDQSGCYRCGKEGHWSKECPVDRTGRVA 185 (346)
T ss_pred cccCCC--------------------CCCHHHheeccccccccccCCccCCCccc
Confidence 654221 11233499999999999999998766543
No 5
>KOG0105|consensus
Probab=99.47 E-value=2.3e-13 Score=115.34 Aligned_cols=79 Identities=38% Similarity=0.596 Sum_probs=72.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
.+.+|||+|||.++.+.||+++|.+||.|..|+|+.. +..||||+|+++.+|+.||..-++..+++..|+|++...-.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 4578999999999999999999999999999998753 56899999999999999999999999999999999987654
Q ss_pred C
Q psy10125 115 M 115 (312)
Q Consensus 115 ~ 115 (312)
.
T Consensus 85 ~ 85 (241)
T KOG0105|consen 85 S 85 (241)
T ss_pred c
Confidence 3
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.43 E-value=1.8e-12 Score=123.31 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=71.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCC--eEEEEEe
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREING--RRVRVEM 109 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~ 109 (312)
..++|||+|||+.+|+++|+++|++||.|+.+.|+.+ +++||||+|.+.++|++||+.|++..+.+ +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4678999999999999999999999999999999865 47999999999999999999999998865 6889998
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876544
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.42 E-value=1.1e-12 Score=124.54 Aligned_cols=76 Identities=20% Similarity=0.388 Sum_probs=71.9
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
.+|||+|||+.+++++|+++|++||.|..++|+++ ++|||||+|.+.++|.+||..||+..|+|+.|+|.+...+
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 36999999999999999999999999999999876 5999999999999999999999999999999999999876
Q ss_pred C
Q psy10125 114 K 114 (312)
Q Consensus 114 ~ 114 (312)
.
T Consensus 350 ~ 350 (352)
T TIGR01661 350 A 350 (352)
T ss_pred C
Confidence 5
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.41 E-value=7.9e-13 Score=95.60 Aligned_cols=66 Identities=39% Similarity=0.725 Sum_probs=62.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEE
Q psy10125 41 VSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106 (312)
Q Consensus 41 l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 106 (312)
|||+|||+.+|+++|+++|++||.|..+.+..+ .+++|||+|.+.++|++|++.+++..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999998874 579999999999999999999999999999875
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=1.6e-12 Score=123.66 Aligned_cols=79 Identities=20% Similarity=0.438 Sum_probs=72.8
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....++|||++||+++|+++|+++|++||.|+.|+|+.+ ++|||||+|.++++|++||+.|++..|.++.|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345789999999999999999999999999999999865 579999999999999999999999999999999999
Q ss_pred cCCC
Q psy10125 110 SNPQ 113 (312)
Q Consensus 110 a~~~ 113 (312)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8764
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.38 E-value=2e-12 Score=122.72 Aligned_cols=77 Identities=25% Similarity=0.500 Sum_probs=72.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
.++|||+|||..+|+++|+++|++||+|..|+|+++ ++|||||+|.+.++|++||..|++..|.++.|+|+++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 579999999999999999999999999999999864 579999999999999999999999999999999999876
Q ss_pred CC
Q psy10125 113 QK 114 (312)
Q Consensus 113 ~~ 114 (312)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 54
No 11
>KOG0126|consensus
Probab=99.38 E-value=1.2e-13 Score=116.76 Aligned_cols=108 Identities=28% Similarity=0.366 Sum_probs=99.1
Q ss_pred cchh-hHHHHhhhhcccccccCCChhHhhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEE
Q psy10125 5 MSHF-KLKLLLCFSSLCQEAEIEDPVMMIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFG 78 (312)
Q Consensus 5 ~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~a 78 (312)
|+|+ +++.++++..-+.+....+....++...++.-|||+|||+..||.||-.+|++||+|+.|.|+++ ++|||
T Consensus 1 mnplt~vk~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFa 80 (219)
T KOG0126|consen 1 MNPLTNVKNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFA 80 (219)
T ss_pred CchhHHHHHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceE
Confidence 5666 78889999888888888887888899999999999999999999999999999999999999986 79999
Q ss_pred EEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 79 FVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 79 fV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
|+-|++..+.-.|+..||++.|.|+.|+|.....
T Consensus 81 FLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 81 FLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred EEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 9999999999999999999999999999986544
No 12
>KOG0121|consensus
Probab=99.38 E-value=1e-12 Score=105.22 Aligned_cols=80 Identities=31% Similarity=0.451 Sum_probs=72.2
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
.....+.+|||+||+..|||++|.++|+++|+|..|-|-.+ +.||+||+|.+.++|+.|++-+++..++.+.|+|
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 34567899999999999999999999999999998876433 7899999999999999999999999999999999
Q ss_pred EecCC
Q psy10125 108 EMSNP 112 (312)
Q Consensus 108 ~~a~~ 112 (312)
.+.-.
T Consensus 111 D~D~G 115 (153)
T KOG0121|consen 111 DWDAG 115 (153)
T ss_pred ecccc
Confidence 98654
No 13
>KOG4207|consensus
Probab=99.38 E-value=1.9e-12 Score=111.54 Aligned_cols=81 Identities=31% Similarity=0.611 Sum_probs=74.4
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
.+...++|-|-||.+.||.++|..+|++||.|-+|.|..+ ++|||||-|.+..+|+.|+++|++..|+|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3445689999999999999999999999999999999865 79999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy10125 109 MSNPQK 114 (312)
Q Consensus 109 ~a~~~~ 114 (312)
+++-..
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 997544
No 14
>KOG0113|consensus
Probab=99.37 E-value=5.2e-12 Score=114.14 Aligned_cols=87 Identities=26% Similarity=0.531 Sum_probs=78.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....||||+.|+.+|+|.+|+..|+.||.|+.|.|+++ ++|||||+|.++.+..+|.+..+++.|+++.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 44689999999999999999999999999999999875 7999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCC
Q psy10125 111 NPQKMRGRSNGR 122 (312)
Q Consensus 111 ~~~~~~~~~~g~ 122 (312)
..+...++...+
T Consensus 179 RgRTvkgW~PRR 190 (335)
T KOG0113|consen 179 RGRTVKGWLPRR 190 (335)
T ss_pred cccccccccccc
Confidence 877666554433
No 15
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=99.36 E-value=2.4e-12 Score=108.29 Aligned_cols=91 Identities=33% Similarity=0.678 Sum_probs=66.5
Q ss_pred CCccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCC-----
Q psy10125 143 DDKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNP----- 217 (312)
Q Consensus 143 ~~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~----- 217 (312)
...||+|+..||++++||+.... .....|++|++.+|++.+||...... ....+..++..| |.+++|+...
T Consensus 27 ~~~C~~Cg~~GH~~~~Cp~~~~~--~~~~~C~~Cg~~GH~~~~Cp~~~~~~-~~~~C~~Cg~~G-H~~~~C~~~~~~~~~ 102 (148)
T PTZ00368 27 ARPCYKCGEPGHLSRECPSAPGG--RGERSCYNCGKTGHLSRECPEAPPGS-GPRSCYNCGQTG-HISRECPNRAKGGAA 102 (148)
T ss_pred CccCccCCCCCcCcccCcCCCCC--CCCcccCCCCCcCcCcccCCCcccCC-CCcccCcCCCCC-cccccCCCccccccc
Confidence 45699999999999999875422 12346999999999999998754332 345677777776 4666776543
Q ss_pred CccccccCCcCccccCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSR 237 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~ 237 (312)
...||+|+++||++++||+.
T Consensus 103 ~~~C~~Cg~~gH~~~~C~~~ 122 (148)
T PTZ00368 103 RRACYNCGGEGHISRDCPNA 122 (148)
T ss_pred chhhcccCcCCcchhcCCCc
Confidence 34699999999999999985
No 16
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=99.36 E-value=1.3e-12 Score=109.98 Aligned_cols=91 Identities=32% Similarity=0.734 Sum_probs=73.3
Q ss_pred CCccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCC-----C
Q psy10125 143 DDKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFN-----P 217 (312)
Q Consensus 143 ~~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~-----~ 217 (312)
...|++|+..||++++||+..... ....|++|++.+|++.+|+...++......+..++..|| .+++|+.. .
T Consensus 52 ~~~C~~Cg~~GH~~~~Cp~~~~~~--~~~~C~~Cg~~GH~~~~C~~~~~~~~~~~~C~~Cg~~gH-~~~~C~~~~~~~~~ 128 (148)
T PTZ00368 52 ERSCYNCGKTGHLSRECPEAPPGS--GPRSCYNCGQTGHISRECPNRAKGGAARRACYNCGGEGH-ISRDCPNAGKRPGG 128 (148)
T ss_pred CcccCCCCCcCcCcccCCCcccCC--CCcccCcCCCCCcccccCCCcccccccchhhcccCcCCc-chhcCCCccccCCC
Confidence 456999999999999999854322 345799999999999999987655444556788887775 67788764 3
Q ss_pred CccccccCCcCccccCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRS 236 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~ 236 (312)
...||+|++.|||++|||+
T Consensus 129 ~~~C~~Cg~~gH~~~dCp~ 147 (148)
T PTZ00368 129 DKTCYNCGQTGHLSRDCPD 147 (148)
T ss_pred CCccccCCCcCcccccCCC
Confidence 4689999999999999996
No 17
>KOG0122|consensus
Probab=99.34 E-value=3.7e-12 Score=112.27 Aligned_cols=77 Identities=35% Similarity=0.594 Sum_probs=73.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
+..+|.|.||++++++++|+++|..||.|..+.|.++ ++|||||.|.+.++|++||..||++-++.-.|+|++++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 5788999999999999999999999999999999875 79999999999999999999999999999999999999
Q ss_pred CC
Q psy10125 112 PQ 113 (312)
Q Consensus 112 ~~ 113 (312)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.33 E-value=4.3e-11 Score=120.04 Aligned_cols=76 Identities=32% Similarity=0.549 Sum_probs=71.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYY--GPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKM 115 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~--G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 115 (312)
..+|||+||++++|+++|+++|++| |.|..|.++ ++||||+|.+.++|++|++.||+..|.++.|+|.++++...
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 4689999999999999999999999 999999887 67999999999999999999999999999999999988655
Q ss_pred C
Q psy10125 116 R 116 (312)
Q Consensus 116 ~ 116 (312)
.
T Consensus 310 ~ 310 (578)
T TIGR01648 310 K 310 (578)
T ss_pred c
Confidence 4
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.33 E-value=8.3e-12 Score=112.65 Aligned_cols=75 Identities=27% Similarity=0.386 Sum_probs=69.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
..+|||+|||+.+|+++|+++|+.||.|.++.|..+ +++||||+|.++++|+.||. |++..|.++.|.|..+..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 469999999999999999999999999999999876 57999999999999999995 9999999999999987643
No 20
>KOG0125|consensus
Probab=99.29 E-value=6e-12 Score=115.04 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=72.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
...|+|.|+|+...+.||+.+|.+||.|.+|+|+.+ +|||+||+|+++++|++|-++||+..|.|++|.|..+..+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 468999999999999999999999999999999864 8999999999999999999999999999999999998764
No 21
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=2.7e-11 Score=88.16 Aligned_cols=66 Identities=41% Similarity=0.750 Sum_probs=59.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEE
Q psy10125 41 VSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106 (312)
Q Consensus 41 l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 106 (312)
|||+|||+++|+++|.++|+.||.|..+.+..+ ++++|||+|.++++|..|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999876 379999999999999999999998999999874
No 22
>KOG0149|consensus
Probab=99.26 E-value=1.1e-11 Score=108.89 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=68.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
+..++|||++|+|+|+.++|++.|++||+|++..|+.| +|||+||+|.+.++|.+|++.. .-.|+|++..+.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 45689999999999999999999999999999999865 7999999999999999999765 45689999888877
Q ss_pred CC
Q psy10125 111 NP 112 (312)
Q Consensus 111 ~~ 112 (312)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=2.2e-11 Score=116.53 Aligned_cols=75 Identities=19% Similarity=0.336 Sum_probs=70.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCcEEEEEeCCH--HHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-PPGFGFVEFEDR--RDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-~kG~afV~f~~~--~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+|||+||++.+|++||+.+|+.||.|..|.|++. -+|||||+|.+. .++.+||..||+..+.|+.|+|+.+++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 478999999999999999999999999999999864 489999999987 789999999999999999999999986
No 24
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=6.7e-11 Score=84.49 Aligned_cols=69 Identities=38% Similarity=0.708 Sum_probs=63.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCC---CcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 40 YVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNP---PGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 40 ~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~---kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
+|||.|||..+++++|+++|.+||.+..+.+..+. +++|||+|.+.++|+.|+..+++..+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888653 7999999999999999999999999999988763
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.19 E-value=1e-10 Score=116.23 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=72.9
Q ss_pred CceEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 37 LVIYVSIVLCST-SSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 37 ~~~~l~V~nLp~-~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
...+|||+||++ .+|+++|+++|+.||.|..|+|+.+.+|||||+|.+.++|..|+..||+..|.|+.|+|.+++...
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 467999999998 699999999999999999999998888999999999999999999999999999999999986643
No 26
>KOG0148|consensus
Probab=99.18 E-value=1.2e-10 Score=104.12 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=75.5
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
+...+.++|||+|++..+||++|+++|+.||.|.+|+|.++ +||+||-|.+.++|..||..+|+.+|.|..++..+-+.
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 45567899999999999999999999999999999999877 99999999999999999999999999999999998876
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
...
T Consensus 238 ~~~ 240 (321)
T KOG0148|consen 238 GDD 240 (321)
T ss_pred CCC
Confidence 543
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.18 E-value=1.1e-10 Score=117.42 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=73.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...+|||+||++++++++|+++|+.||.|..+.|.++ ++|||||+|.+.++|.+||..||+..|+|+.|+|..+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 3478999999999999999999999999999999864 58999999999999999999999999999999999888
Q ss_pred CCCC
Q psy10125 112 PQKM 115 (312)
Q Consensus 112 ~~~~ 115 (312)
..+.
T Consensus 283 ~pP~ 286 (612)
T TIGR01645 283 TPPD 286 (612)
T ss_pred CCcc
Confidence 6554
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.16 E-value=1.9e-10 Score=102.53 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=68.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+|||+||++.+|+++|+++|+.||.|.+|.|+++ .++||||+|.++++++.|+ .|++..|.++.|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 468999999999999999999999999999999976 4689999999999999999 6999999999999987653
No 29
>KOG0111|consensus
Probab=99.16 E-value=2.9e-11 Score=105.18 Aligned_cols=82 Identities=29% Similarity=0.509 Sum_probs=75.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.+...+|||++|..++|+.-|..+|-.||.|+.|.++.+ .+||+||+|...++|.+||..||..+|-|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 355789999999999999999999999999999999865 589999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy10125 110 SNPQKMR 116 (312)
Q Consensus 110 a~~~~~~ 116 (312)
++|.+-.
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9987654
No 30
>KOG0117|consensus
Probab=99.15 E-value=4.9e-11 Score=112.98 Aligned_cols=74 Identities=24% Similarity=0.486 Sum_probs=69.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKM 115 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 115 (312)
..|||.||+.+||++.|+++|.+||.|..|+.+ +.||||+|.+.++|.+|++.+|+..|+|..|.|.++++...
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 578999999999999999999999999999887 55999999999999999999999999999999999998654
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.15 E-value=1.7e-10 Score=116.19 Aligned_cols=76 Identities=28% Similarity=0.482 Sum_probs=70.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+||++.+++++|+++|.+||.|.++.|+.+ ++|||||+|.+.++|+.|++.||+..|.|+.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34679999999999999999999999999999999765 6999999999999999999999999999999999854
Q ss_pred C
Q psy10125 111 N 111 (312)
Q Consensus 111 ~ 111 (312)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.14 E-value=2.1e-10 Score=115.18 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=67.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeC-CeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREIN-GRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~ 109 (312)
+...++|||+|||+++++++|+++|++||.|.+++|+++ ++|||||+|.+.++|++||+.||+..|. ++.|.|..
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 445689999999999999999999999999999999865 7899999999999999999999998885 66666654
Q ss_pred c
Q psy10125 110 S 110 (312)
Q Consensus 110 a 110 (312)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 33
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.14 E-value=4.8e-10 Score=80.44 Aligned_cols=70 Identities=39% Similarity=0.712 Sum_probs=64.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCC----CcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 40 YVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNP----PGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 40 ~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~----kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
+|+|.+||+.+++++|+++|..+|.|..+.+..+. ++++||+|.+.++|..|+..+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999988753 79999999999999999999999999999998864
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.13 E-value=2.1e-10 Score=115.96 Aligned_cols=76 Identities=25% Similarity=0.483 Sum_probs=69.9
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
.+|||+|||+++|+++|+++|++||.|.+|+|.++ ++|||||+|.+.++|++|+..++...|.++.|+|.++...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999865 5799999999999999999999999999999999987643
Q ss_pred C
Q psy10125 114 K 114 (312)
Q Consensus 114 ~ 114 (312)
+
T Consensus 81 ~ 81 (562)
T TIGR01628 81 P 81 (562)
T ss_pred c
Confidence 3
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.12 E-value=3.9e-10 Score=112.43 Aligned_cols=78 Identities=14% Similarity=0.298 Sum_probs=71.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...+|||+|||+.+|+++|+++|.+||.|..+.|+.+ ++|||||+|.+.++|..|+..|+++.|.++.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 3579999999999999999999999999999998764 58999999999999999999999999999999999986
Q ss_pred CCC
Q psy10125 112 PQK 114 (312)
Q Consensus 112 ~~~ 114 (312)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.12 E-value=2.7e-10 Score=115.25 Aligned_cols=78 Identities=26% Similarity=0.437 Sum_probs=72.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
...+|||+||++++|+++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|+..||+..+.|+.|.|.++..
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 4568999999999999999999999999999999865 589999999999999999999999999999999999986
Q ss_pred CC
Q psy10125 113 QK 114 (312)
Q Consensus 113 ~~ 114 (312)
+.
T Consensus 364 k~ 365 (562)
T TIGR01628 364 KE 365 (562)
T ss_pred cH
Confidence 53
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.12 E-value=3.1e-10 Score=111.72 Aligned_cols=76 Identities=25% Similarity=0.538 Sum_probs=70.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|++..|.++.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 579999999999999999999999999999999864 479999999999999999999999999999999999874
Q ss_pred C
Q psy10125 113 Q 113 (312)
Q Consensus 113 ~ 113 (312)
.
T Consensus 266 ~ 266 (457)
T TIGR01622 266 S 266 (457)
T ss_pred C
Confidence 3
No 38
>KOG0130|consensus
Probab=99.10 E-value=1.6e-10 Score=93.61 Aligned_cols=82 Identities=28% Similarity=0.465 Sum_probs=74.0
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
+...-.-|||.++-+.+|+++|.+.|+.||+|+++.|..+ .+|||+|+|++..+|++|+..+|+..|.++.|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3344567999999999999999999999999999999865 58999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy10125 109 MSNPQKM 115 (312)
Q Consensus 109 ~a~~~~~ 115 (312)
|...+++
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9876554
No 39
>KOG0148|consensus
Probab=99.10 E-value=1.6e-10 Score=103.39 Aligned_cols=76 Identities=26% Similarity=0.520 Sum_probs=72.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
.-|||+-|...++.++|+++|.+||+|.+++|++| +|||+||.|...++|+.||..||+.+|+.+.|+-.++..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 46999999999999999999999999999999986 7999999999999999999999999999999999999877
Q ss_pred C
Q psy10125 114 K 114 (312)
Q Consensus 114 ~ 114 (312)
+
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 6
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.10 E-value=4.2e-10 Score=111.84 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=69.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHh--CCCceeCCeEEEEEecCCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRG--FDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~--l~g~~i~g~~i~V~~a~~~~ 114 (312)
+.+|||+|||+.+|+++|+++|++||.|..+.|+. .++||||+|.+.++|++|+.. +++..|.|+.|.|+++..+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 56899999999999999999999999999999885 489999999999999999986 47789999999999997543
No 41
>smart00360 RRM RNA recognition motif.
Probab=99.07 E-value=8.2e-10 Score=78.40 Aligned_cols=66 Identities=36% Similarity=0.720 Sum_probs=60.3
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 43 IVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 43 V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
|+|||..+++++|+++|.+||.|..+.+..+ ++++|||+|.+.++|..|+..+++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999988765 36899999999999999999999999999988774
No 42
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.05 E-value=9.6e-10 Score=108.23 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=70.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+||. |++..+.++.|.|+.+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 34679999999999999999999999999999999864 58999999999999999995 8999999999999887
Q ss_pred CCC
Q psy10125 111 NPQ 113 (312)
Q Consensus 111 ~~~ 113 (312)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 654
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.03 E-value=1.3e-09 Score=97.23 Aligned_cols=75 Identities=35% Similarity=0.649 Sum_probs=70.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+|||+|||..+|+++|.++|.+||.|..+.+..+ ++|||||+|.+.++|..|+..+++..|.++.|.|..+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999988888754 689999999999999999999999999999999999764
No 44
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=1.6e-09 Score=75.57 Aligned_cols=56 Identities=34% Similarity=0.695 Sum_probs=51.2
Q ss_pred HHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 55 IEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 55 L~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
|.++|++||+|..+.+..+.+++|||+|.+.++|..|++.||+..+.|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998665699999999999999999999999999999999985
No 45
>KOG0145|consensus
Probab=99.03 E-value=7.7e-10 Score=98.58 Aligned_cols=79 Identities=20% Similarity=0.456 Sum_probs=74.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...+.|.|.-||..+|++||+.+|...|+|.++++++| +.||+||.|-++++|++|+..||+..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34678999999999999999999999999999999986 6899999999999999999999999999999999999
Q ss_pred CCCC
Q psy10125 111 NPQK 114 (312)
Q Consensus 111 ~~~~ 114 (312)
+|..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 9855
No 46
>KOG0114|consensus
Probab=99.02 E-value=1.6e-09 Score=84.05 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=70.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee--CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR--NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~--~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
..-|||.|||+.+|.+++.++|.+||.|..|+|-. ..+|-|||.|++..+|.+|+..|++..+.++-+.|-+.++..
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 45699999999999999999999999999999853 368999999999999999999999999999999998877643
No 47
>KOG0144|consensus
Probab=98.97 E-value=7.1e-10 Score=104.79 Aligned_cols=88 Identities=22% Similarity=0.421 Sum_probs=76.1
Q ss_pred hHhhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCce-eCC-
Q psy10125 29 VMMIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGRE-ING- 102 (312)
Q Consensus 29 ~~~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~-i~g- 102 (312)
..+..+.....+|||+.|+..+||.||+++|++||.|+++.|.++ ++|+|||.|.+.+.|..||+.||+.. +.|
T Consensus 115 d~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc 194 (510)
T KOG0144|consen 115 DGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC 194 (510)
T ss_pred chhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccC
Confidence 334445566789999999999999999999999999999999986 79999999999999999999999954 444
Q ss_pred -eEEEEEecCCCCCC
Q psy10125 103 -RRVRVEMSNPQKMR 116 (312)
Q Consensus 103 -~~i~V~~a~~~~~~ 116 (312)
..|.|.|+.+++.+
T Consensus 195 s~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 195 SQPLVVKFADTQKDK 209 (510)
T ss_pred CCceEEEecccCCCc
Confidence 57999999887653
No 48
>KOG0117|consensus
Probab=98.97 E-value=2.6e-09 Score=101.40 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=76.6
Q ss_pred CChhHhhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCcee
Q psy10125 26 EDPVMMIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI 100 (312)
Q Consensus 26 ~~p~~~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i 100 (312)
..|.-....+..-+.|||+.||.++.|+||.-+|++.|+|-+++|+.+ ++|||||+|.+.++|+.||+.||+.+|
T Consensus 71 PpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 71 PPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred CCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc
Confidence 334444455677889999999999999999999999999999999976 699999999999999999999999988
Q ss_pred C-CeEEEEEecCCC
Q psy10125 101 N-GRRVRVEMSNPQ 113 (312)
Q Consensus 101 ~-g~~i~V~~a~~~ 113 (312)
. |+.|.|..+...
T Consensus 151 r~GK~igvc~Svan 164 (506)
T KOG0117|consen 151 RPGKLLGVCVSVAN 164 (506)
T ss_pred cCCCEeEEEEeeec
Confidence 4 888888877653
No 49
>KOG0153|consensus
Probab=98.96 E-value=2.8e-09 Score=98.42 Aligned_cols=98 Identities=29% Similarity=0.406 Sum_probs=78.6
Q ss_pred chhhHHHHhhhhcccccccCCChhHhhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCH
Q psy10125 6 SHFKLKLLLCFSSLCQEAEIEDPVMMIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDR 85 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~ 85 (312)
+|..+++|....++.. +.+|+ .+..++|||++|...+++.+|+++|.+||+|..+.+... +++|||+|.+.
T Consensus 204 dPva~kil~ra~~~~~---lepPe-----D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR 274 (377)
T KOG0153|consen 204 DPVALKILNRAGSAGT---LEPPE-----DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTR 274 (377)
T ss_pred ChHHHHHHhhcccccc---cCCCc-----ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhh
Confidence 4555666666665533 23332 344579999999999999999999999999999988754 77999999999
Q ss_pred HHHHHHHHh-CCCceeCCeEEEEEecCC
Q psy10125 86 RDAEDAVRG-FDGREINGRRVRVEMSNP 112 (312)
Q Consensus 86 ~~A~~Ai~~-l~g~~i~g~~i~V~~a~~ 112 (312)
.+|+.|.+. ++...|+|.+|+|.|..+
T Consensus 275 ~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 275 EAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 999988764 466788999999999888
No 50
>KOG0415|consensus
Probab=98.95 E-value=1.4e-09 Score=100.54 Aligned_cols=78 Identities=28% Similarity=0.422 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
...|||..|.+-||.+||+-+|+.||.|..+.|+++ +..||||+|++.+++++|...|+...|+.++|.|.+++.
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 367999999999999999999999999999999976 568999999999999999999999999999999999987
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
-..
T Consensus 319 Vsk 321 (479)
T KOG0415|consen 319 VSK 321 (479)
T ss_pred hhh
Confidence 554
No 51
>KOG0131|consensus
Probab=98.91 E-value=1.4e-09 Score=92.29 Aligned_cols=77 Identities=22% Similarity=0.384 Sum_probs=71.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.....||||+||++.++++-|.++|-+.|.|..+.+.++ .+||||++|.++++|+-|++.|+.+.+-|+.|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 345689999999999999999999999999999999864 689999999999999999999999999999999998
Q ss_pred cC
Q psy10125 110 SN 111 (312)
Q Consensus 110 a~ 111 (312)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 52
>KOG0127|consensus
Probab=98.86 E-value=7e-09 Score=100.67 Aligned_cols=79 Identities=29% Similarity=0.517 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
..+|.|.|||+.+...+|+.+|++||.|..|.|++. -.|||||+|.+..+|..|++.+|+..|+|+.|.|.|+.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 568999999999999999999999999999999864 3599999999999999999999999999999999999887
Q ss_pred CCC
Q psy10125 114 KMR 116 (312)
Q Consensus 114 ~~~ 116 (312)
...
T Consensus 197 d~y 199 (678)
T KOG0127|consen 197 DTY 199 (678)
T ss_pred ccc
Confidence 654
No 53
>KOG0108|consensus
Probab=98.85 E-value=6e-09 Score=101.19 Aligned_cols=78 Identities=33% Similarity=0.566 Sum_probs=73.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
..|||+|+|+++++++|..+|+..|.|..++++.| ++||+|++|.+++.++.|++.||+.++.+++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999875 6999999999999999999999999999999999999876
Q ss_pred CCC
Q psy10125 114 KMR 116 (312)
Q Consensus 114 ~~~ 116 (312)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 654
No 54
>KOG0131|consensus
Probab=98.84 E-value=6e-09 Score=88.53 Aligned_cols=108 Identities=16% Similarity=0.284 Sum_probs=84.3
Q ss_pred hHHHHhhhhcccccccCCChhHhhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEee-----CCCcEEEEEe
Q psy10125 9 KLKLLLCFSSLCQEAEIEDPVMMIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN-VWVAR-----NPPGFGFVEF 82 (312)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~-v~i~~-----~~kG~afV~f 82 (312)
.+|+|.+.+.+-....++.-...........+|||+||++++++..|.++|+.||.|.. -++++ ++++|+||.|
T Consensus 67 Aikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~ 146 (203)
T KOG0131|consen 67 AIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINY 146 (203)
T ss_pred HHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEec
Confidence 56777776666554444333322223344579999999999999999999999999854 24443 3689999999
Q ss_pred CCHHHHHHHHHhCCCceeCCeEEEEEecCCCCCC
Q psy10125 83 EDRRDAEDAVRGFDGREINGRRVRVEMSNPQKMR 116 (312)
Q Consensus 83 ~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~~ 116 (312)
++.+++.+|+..+++..+..+.+.|.++..+...
T Consensus 147 ~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 147 ASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999999999999876543
No 55
>KOG0145|consensus
Probab=98.83 E-value=1.6e-08 Score=90.32 Aligned_cols=76 Identities=22% Similarity=0.376 Sum_probs=70.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..-|||-||.++++|.-|.++|..||.|..|+|++| -+||+||.+.+-++|..||..||+..+.++.|.|.+...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 357999999999999999999999999999999986 489999999999999999999999999999999998765
Q ss_pred C
Q psy10125 113 Q 113 (312)
Q Consensus 113 ~ 113 (312)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 56
>KOG0116|consensus
Probab=98.82 E-value=2.8e-08 Score=96.07 Aligned_cols=78 Identities=29% Similarity=0.483 Sum_probs=67.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+|||.|||.+++.++|+++|.+||.|+...|... ...||||+|.+..+++.||.+- ...|++++|.|+..++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 456999999999999999999999999988777531 2389999999999999999764 8899999999999887
Q ss_pred CCCC
Q psy10125 113 QKMR 116 (312)
Q Consensus 113 ~~~~ 116 (312)
....
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5543
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.80 E-value=1.6e-08 Score=100.94 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=61.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcC------------CCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCe
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYY------------GPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGR 103 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~------------G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~ 103 (312)
....+|||+|||+.+|+++|+++|.++ +.|..+.+. ..++||||+|.+.++|..|| .|+++.|.+.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~ 250 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-KEKNFAFLEFRTVEEATFAM-ALDSIIYSNV 250 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-CCCCEEEEEeCCHHHHhhhh-cCCCeEeeCc
Confidence 346799999999999999999999975 234444443 45899999999999999999 5999999999
Q ss_pred EEEEEec
Q psy10125 104 RVRVEMS 110 (312)
Q Consensus 104 ~i~V~~a 110 (312)
.|+|...
T Consensus 251 ~l~v~r~ 257 (509)
T TIGR01642 251 FLKIRRP 257 (509)
T ss_pred eeEecCc
Confidence 9988644
No 58
>KOG0146|consensus
Probab=98.79 E-value=6.7e-09 Score=92.96 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=74.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
.+-.+|||-.||.+.++.||...|..||.|.+.++..| +|.|+||.|+++.++++||..||++.|+-++|+|++.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 45789999999999999999999999999999888754 7999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy10125 111 NPQKM 115 (312)
Q Consensus 111 ~~~~~ 115 (312)
+++..
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 88764
No 59
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.76 E-value=4.9e-09 Score=90.05 Aligned_cols=81 Identities=25% Similarity=0.562 Sum_probs=54.8
Q ss_pred CCccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCC-CCCC-Ccc
Q psy10125 143 DDKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGR-PFNP-DDK 220 (312)
Q Consensus 143 ~~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~-~~~~-~~~ 220 (312)
...|++|++.||.+++|| . ..|++|...+|.+..||.. .-|..||.-|| .+++| |... ...
T Consensus 60 ~~~C~nCg~~GH~~~DCP-~--------~iC~~C~~~~H~s~~C~~~-------~~C~~Cg~~GH-~~~dC~P~~~~~~~ 122 (190)
T COG5082 60 NPVCFNCGQNGHLRRDCP-H--------SICYNCSWDGHRSNHCPKP-------KKCYNCGETGH-LSRDCNPSKDQQKS 122 (190)
T ss_pred ccccchhcccCcccccCC-h--------hHhhhcCCCCcccccCCcc-------cccccccccCc-cccccCcccccCcc
Confidence 345999999999999999 3 3688887788888888864 34555554443 44445 3332 235
Q ss_pred ccccCCcCccccCCCCCCCC
Q psy10125 221 CYECGGRGHYARDCRSRRSG 240 (312)
Q Consensus 221 C~~Cg~~GH~ar~Cp~~~~~ 240 (312)
||.|...+|.+++||.....
T Consensus 123 C~~C~s~~H~s~~Cp~~~k~ 142 (190)
T COG5082 123 CFDCNSTRHSSEDCPSIWKH 142 (190)
T ss_pred eeccCCCccccccCcccccc
Confidence 77777777777777765443
No 60
>KOG0132|consensus
Probab=98.74 E-value=2.4e-08 Score=100.34 Aligned_cols=79 Identities=16% Similarity=0.346 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKM 115 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 115 (312)
.-++||||++|+..+++.||..+|+.||+|.+|.++ .++++|||.+...++|.+|+.+|....+..+.|+|.|+..+..
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 347899999999999999999999999999999887 4599999999999999999999999999999999999976553
No 61
>KOG4206|consensus
Probab=98.71 E-value=3.8e-08 Score=86.39 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=71.1
Q ss_pred ceEEEEcCCCCCCCHHHHHH----HhhcCCCeeEEEEeeC--CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 38 VIYVSIVLCSTSSTKEDIED----AFSYYGPIKNVWVARN--PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~----~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
..||||.||++.+..++|+. +|++||.|..|...+. .+|-|||.|.+.+.|..|+.+|++..+-|+.++|+++.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 34999999999999999887 9999999999888753 58999999999999999999999999999999999998
Q ss_pred CCCC
Q psy10125 112 PQKM 115 (312)
Q Consensus 112 ~~~~ 115 (312)
....
T Consensus 89 s~sd 92 (221)
T KOG4206|consen 89 SDSD 92 (221)
T ss_pred Cccc
Confidence 7653
No 62
>KOG0124|consensus
Probab=98.71 E-value=1e-08 Score=95.19 Aligned_cols=75 Identities=28% Similarity=0.491 Sum_probs=69.1
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
....|||+.+++++.|+.|+.+|..||.|+++.+..+ .+|||||+|+-++.|+.|++.||+..++|+.|+|..-.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 3578999999999999999999999999999998765 58999999999999999999999999999999987443
No 63
>KOG0106|consensus
Probab=98.70 E-value=2.1e-08 Score=88.47 Aligned_cols=74 Identities=41% Similarity=0.612 Sum_probs=68.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKM 115 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 115 (312)
..|||++|++.+.+.+|+.+|..||.+..+.++ .+|+||+|++..+|..|+..+++..|.+..+.|++++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 468999999999999999999999999999988 78999999999999999999999999999988888876443
No 64
>smart00361 RRM_1 RNA recognition motif.
Probab=98.69 E-value=9e-08 Score=70.00 Aligned_cols=56 Identities=32% Similarity=0.621 Sum_probs=49.3
Q ss_pred HHHHHHHhh----cCCCeeEEE-Eee-------CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 52 KEDIEDAFS----YYGPIKNVW-VAR-------NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 52 eedL~~~F~----~~G~I~~v~-i~~-------~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
+++|+++|+ +||.|.++. |.. .++||+||.|.+.++|.+|+..||+..+.++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999885 432 25899999999999999999999999999999876
No 65
>KOG0127|consensus
Probab=98.68 E-value=3.2e-08 Score=96.17 Aligned_cols=77 Identities=32% Similarity=0.493 Sum_probs=72.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
.||||++||++++.++|.++|+.+|+|..+.++.+ .+||+||.|+..++++.|++.+.+..+.|+.|.|.+++.+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999998864 5899999999999999999999999999999999999877
Q ss_pred CC
Q psy10125 114 KM 115 (312)
Q Consensus 114 ~~ 115 (312)
.+
T Consensus 86 ~r 87 (678)
T KOG0127|consen 86 AR 87 (678)
T ss_pred cc
Confidence 64
No 66
>KOG0144|consensus
Probab=98.64 E-value=5e-08 Score=92.47 Aligned_cols=78 Identities=17% Similarity=0.457 Sum_probs=67.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCc-eeCC--eEEEEE
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGR-EING--RRVRVE 108 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~-~i~g--~~i~V~ 108 (312)
+..+|||+.+|..++|.||+.+|++||.|.+|.|++| ++|++||.|.+.++|.+|+.+|+.. .|.| ..|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3568999999999999999999999999999999986 6899999999999999999999774 4444 567777
Q ss_pred ecCCCC
Q psy10125 109 MSNPQK 114 (312)
Q Consensus 109 ~a~~~~ 114 (312)
++....
T Consensus 113 ~Ad~E~ 118 (510)
T KOG0144|consen 113 YADGER 118 (510)
T ss_pred ccchhh
Confidence 776544
No 67
>KOG4212|consensus
Probab=98.64 E-value=9.9e-08 Score=90.61 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=68.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFS-YYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~-~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+||.|+|+++.+++|+++|. +.|+|..|.|..+ ++|+|.|+|++++.+++|++.||.+++.++.|+|.....
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 4599999999999999999996 6899999999865 799999999999999999999999999999999987665
No 68
>KOG0123|consensus
Probab=98.63 E-value=8.9e-08 Score=91.92 Aligned_cols=74 Identities=28% Similarity=0.478 Sum_probs=69.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCC
Q psy10125 41 VSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKM 115 (312)
Q Consensus 41 l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 115 (312)
|||.||+++++.++|.++|+.||.|+++++..+ ++|| ||+|+++++|.+|+..+|+..+.++.|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 999999999999999999999999999999876 7899 9999999999999999999999999999987776543
No 69
>KOG0146|consensus
Probab=98.62 E-value=3.6e-08 Score=88.32 Aligned_cols=87 Identities=20% Similarity=0.328 Sum_probs=74.9
Q ss_pred hhHhhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeC--
Q psy10125 28 PVMMIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREIN-- 101 (312)
Q Consensus 28 p~~~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~-- 101 (312)
|.....+..++.+|||+.|...-.|+|++.+|..||.|.++.+.+. +||+|||.|.+..+|+.||..|++....
T Consensus 9 padsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 9 PADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred ccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 4444557778899999999999999999999999999999999864 7999999999999999999999986543
Q ss_pred -CeEEEEEecCCCC
Q psy10125 102 -GRRVRVEMSNPQK 114 (312)
Q Consensus 102 -g~~i~V~~a~~~~ 114 (312)
...|.|.++...+
T Consensus 89 ASSSLVVK~ADTdk 102 (371)
T KOG0146|consen 89 ASSSLVVKFADTDK 102 (371)
T ss_pred CccceEEEeccchH
Confidence 4678999987654
No 70
>KOG0110|consensus
Probab=98.57 E-value=1.8e-07 Score=93.47 Aligned_cols=73 Identities=27% Similarity=0.535 Sum_probs=67.9
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
++|||.||++++|.++|...|..+|.|..+.|... +.|||||+|.++++|+.|++.|++..|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999988643 3599999999999999999999999999999999999
Q ss_pred C
Q psy10125 111 N 111 (312)
Q Consensus 111 ~ 111 (312)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 71
>KOG0147|consensus
Probab=98.56 E-value=9.1e-08 Score=93.18 Aligned_cols=74 Identities=26% Similarity=0.517 Sum_probs=68.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 41 VSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 41 l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
|||+||-+.+|+++|+.+|..||.|..|.+.++ ++||+||+|.+.+.|.+|+..||+++|-|+.|+|.....+-
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999999999999999999999999999999876 58999999999999999999999999999999988765543
No 72
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=98.55 E-value=3.5e-08 Score=52.89 Aligned_cols=18 Identities=56% Similarity=1.317 Sum_probs=16.5
Q ss_pred ccccccCCcCccccCCCC
Q psy10125 219 DKCYECGGRGHYARDCRS 236 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~ 236 (312)
..||+|++.||+|++||+
T Consensus 1 ~~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCPK 18 (18)
T ss_dssp SBCTTTSCSSSCGCTSSS
T ss_pred CcCcCCCCcCcccccCcc
Confidence 369999999999999995
No 73
>KOG4661|consensus
Probab=98.54 E-value=1.7e-07 Score=91.54 Aligned_cols=81 Identities=23% Similarity=0.386 Sum_probs=73.5
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
+.....+|||.+|+..|...||+.+|++||+|+-.+|+.+ .+.|+||++.+..+|.++|..|+..+|.|+.|.|+
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 4455679999999999999999999999999999998865 47899999999999999999999999999999999
Q ss_pred ecCCCC
Q psy10125 109 MSNPQK 114 (312)
Q Consensus 109 ~a~~~~ 114 (312)
-++..+
T Consensus 481 kaKNEp 486 (940)
T KOG4661|consen 481 KAKNEP 486 (940)
T ss_pred ecccCc
Confidence 887644
No 74
>KOG4400|consensus
Probab=98.50 E-value=1.3e-07 Score=86.74 Aligned_cols=91 Identities=30% Similarity=0.590 Sum_probs=42.6
Q ss_pred CccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcccC--CCCCCCCCCCCCCCCCccCCCCCCCCCccc
Q psy10125 144 DKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMR--GRSNGRSGGDRGYRGSVRARGRPFNPDDKC 221 (312)
Q Consensus 144 ~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~--g~~~g~~g~~~G~~g~~~~~~~~~~~~~~C 221 (312)
..|++|++.||+.++|+....... ....|+.|+..+|+. |+.... .... --|+.||.-|| .+.+|+......|
T Consensus 93 ~~c~~C~~~gH~~~~c~~~~~~~~-~~~~~~~c~~~gh~~--~~~~~~~~~~~~-~~Cy~Cg~~GH-~s~~C~~~~~~~c 167 (261)
T KOG4400|consen 93 AACFNCGEGGHIERDCPEAGKEGS-SETSCYSCGKTGHRG--CPDADPVDGPKP-AKCYSCGEQGH-ISDDCPENKGGTC 167 (261)
T ss_pred hhhhhCCCCccchhhCCcccCccc-ccceeeccCCCcccc--CcccccccCCCC-CccCCCCcCCc-chhhCCCCCCCcc
Confidence 345566666666666655433221 123455566655555 211110 0111 23455544432 5555554334456
Q ss_pred cccCCcCccccCCCCCCC
Q psy10125 222 YECGGRGHYARDCRSRRS 239 (312)
Q Consensus 222 ~~Cg~~GH~ar~Cp~~~~ 239 (312)
|.|++.+|.+++||+...
T Consensus 168 ~~c~~~~h~~~~C~~~~~ 185 (261)
T KOG4400|consen 168 FRCGKVGHGSRDCPSKQK 185 (261)
T ss_pred ccCCCcceecccCCcccc
Confidence 666666666666655443
No 75
>KOG1457|consensus
Probab=98.49 E-value=8e-07 Score=77.97 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=69.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCC------CcEEEEEeCCHHHHHHHHHhCCCceeC---CeEEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNP------PGFGFVEFEDRRDAEDAVRGFDGREIN---GRRVR 106 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~------kG~afV~f~~~~~A~~Ai~~l~g~~i~---g~~i~ 106 (312)
....||||.+||.++...||..+|..|-......|...+ +-+|||+|.+...|.+|+..||++.++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 446799999999999999999999999777666665432 469999999999999999999999997 78899
Q ss_pred EEecCCCCCC
Q psy10125 107 VEMSNPQKMR 116 (312)
Q Consensus 107 V~~a~~~~~~ 116 (312)
|++++...+.
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 9999886654
No 76
>KOG4400|consensus
Probab=98.48 E-value=2.2e-07 Score=85.25 Aligned_cols=90 Identities=30% Similarity=0.616 Sum_probs=65.0
Q ss_pred CCCCccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCcc-CCCCCCCCC-
Q psy10125 141 NPDDKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVR-ARGRPFNPD- 218 (312)
Q Consensus 141 ~~~~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~-~~~~~~~~~- 218 (312)
.+...|+.|+..+|.+.+|+. ....|++|++.||+.++|+.........-.+..++..+|.. ....+....
T Consensus 70 ~~~~~c~~~g~~~~~~~~~~~-------~~~~c~~C~~~gH~~~~c~~~~~~~~~~~~~~~c~~~gh~~~~~~~~~~~~~ 142 (261)
T KOG4400|consen 70 CPEVSCYICGEKGHLGRRCTR-------IAAACFNCGEGGHIERDCPEAGKEGSSETSCYSCGKTGHRGCPDADPVDGPK 142 (261)
T ss_pred CCCceeeecCCCCchhhcCcc-------cchhhhhCCCCccchhhCCcccCcccccceeeccCCCccccCcccccccCCC
Confidence 345679999999999999986 22569999999999999998765443233344555555544 122221112
Q ss_pred -ccccccCCcCccccCCCCC
Q psy10125 219 -DKCYECGGRGHYARDCRSR 237 (312)
Q Consensus 219 -~~C~~Cg~~GH~ar~Cp~~ 237 (312)
..||+||+.||++++||++
T Consensus 143 ~~~Cy~Cg~~GH~s~~C~~~ 162 (261)
T KOG4400|consen 143 PAKCYSCGEQGHISDDCPEN 162 (261)
T ss_pred CCccCCCCcCCcchhhCCCC
Confidence 4599999999999999987
No 77
>KOG0533|consensus
Probab=98.41 E-value=8.1e-07 Score=80.07 Aligned_cols=80 Identities=25% Similarity=0.419 Sum_probs=71.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
+..++|+|.||+..|+++||+++|.+|+.++.+.|..+ +.|.|-|.|...++|.+|++.++++.++|+.+++++..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34588999999999999999999999998888888765 67999999999999999999999999999999998876
Q ss_pred CCCC
Q psy10125 112 PQKM 115 (312)
Q Consensus 112 ~~~~ 115 (312)
+...
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 6443
No 78
>KOG4212|consensus
Probab=98.39 E-value=6.1e-07 Score=85.33 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=67.8
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
..+.++|+|.|||.+.|++.|++-|.+||.|+.++|+..-+.-+.|-|.++++|+.|+..|++..++|+.|+|.+.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3556789999999999999999999999999999996544444589999999999999999999999999999863
No 79
>KOG0124|consensus
Probab=98.37 E-value=1e-06 Score=82.17 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=70.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
.....|||..+-++.+++||+..|+.||+|+.+.+-+. .+||+||+|.+..+...||..||-+.++|.-|+|--+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 44679999999999999999999999999999999764 5899999999999999999999999999999998765
Q ss_pred CC
Q psy10125 111 NP 112 (312)
Q Consensus 111 ~~ 112 (312)
..
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 44
No 80
>KOG4205|consensus
Probab=98.35 E-value=4.7e-07 Score=84.61 Aligned_cols=79 Identities=23% Similarity=0.355 Sum_probs=69.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...+|||++|+|.+|++.|++.|.+||+|.++.++++ ++||+||+|+++....++|. ...+.|+++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5679999999999999999999999999999999975 68999999999998888885 44678899999888887
Q ss_pred CCCCC
Q psy10125 112 PQKMR 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
++..+
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 76643
No 81
>KOG0123|consensus
Probab=98.33 E-value=1.7e-06 Score=83.21 Aligned_cols=73 Identities=25% Similarity=0.423 Sum_probs=67.2
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
..|||+ +++|+.+|.++|+.+|.+.+++|.++ +.|||||.|.++.+|++||..||...+.|+.|+|.++...+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468998 89999999999999999999988765 68999999999999999999999999999999999987655
No 82
>KOG0110|consensus
Probab=98.31 E-value=5e-07 Score=90.40 Aligned_cols=76 Identities=25% Similarity=0.497 Sum_probs=71.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
.++|.|.|||+..+..+|+.+|..||.+..|+|+.. .+||+||+|-++++|..|+.+|...-+.|++|.++|+..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 579999999999999999999999999999999854 589999999999999999999999999999999999976
Q ss_pred C
Q psy10125 113 Q 113 (312)
Q Consensus 113 ~ 113 (312)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 3
No 83
>KOG4209|consensus
Probab=98.28 E-value=4.7e-06 Score=75.03 Aligned_cols=81 Identities=28% Similarity=0.380 Sum_probs=72.0
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
....+...+||+|++..+|.++|+.+|+.||.|..+.|..+ +++|+||+|.+.+.++.++. |++..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 34456789999999999999999999999999987777643 79999999999999999997 9999999999999
Q ss_pred EecCCCC
Q psy10125 108 EMSNPQK 114 (312)
Q Consensus 108 ~~a~~~~ 114 (312)
.+.+...
T Consensus 175 t~~r~~~ 181 (231)
T KOG4209|consen 175 TLKRTNV 181 (231)
T ss_pred eeeeeec
Confidence 9887664
No 84
>KOG4208|consensus
Probab=98.28 E-value=2.1e-06 Score=74.52 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=68.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEee-----CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYY-GPIKNVWVAR-----NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~-G~I~~v~i~~-----~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
..-+||..+|..+.+.+|...|.++ |.+..+.+-+ +++|||||+|++++.|..|-+.||+..+.++.|.+.+..
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4678999999999999999999999 6677777754 379999999999999999999999999999999999887
Q ss_pred CC
Q psy10125 112 PQ 113 (312)
Q Consensus 112 ~~ 113 (312)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 75
No 85
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.26 E-value=1.2e-06 Score=75.45 Aligned_cols=76 Identities=29% Similarity=0.646 Sum_probs=42.1
Q ss_pred cccCCCCCCCCcCC-CCCCCCCCCCCccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccc
Q psy10125 146 CYECGGRGHYARDC-RSRRSGGSGRPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYEC 224 (312)
Q Consensus 146 c~~Cg~~Gh~a~~C-p~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~~~~C~~C 224 (312)
|++||+.||++++| |.... ...|+.|+...|.+.+||.-.+....- +.. .+ .-...||+|
T Consensus 100 C~~Cg~~GH~~~dC~P~~~~-----~~~C~~C~s~~H~s~~Cp~~~k~y~~~----~~~---~~-------~~~~~cy~c 160 (190)
T COG5082 100 CYNCGETGHLSRDCNPSKDQ-----QKSCFDCNSTRHSSEDCPSIWKHYVLN----NGD---GH-------PIKKFCYSC 160 (190)
T ss_pred cccccccCccccccCccccc-----CcceeccCCCccccccCcccccccccc----cCC---Cc-------ceeeecccc
Confidence 56666666666666 33221 124566666666666665532211000 000 00 114679999
Q ss_pred CCcCccccCCCCCCCC
Q psy10125 225 GGRGHYARDCRSRRSG 240 (312)
Q Consensus 225 g~~GH~ar~Cp~~~~~ 240 (312)
+..+|++.||+.+...
T Consensus 161 ~~~~H~~~dc~~~~~s 176 (190)
T COG5082 161 GSAGHFGDDCKEPRSS 176 (190)
T ss_pred CCccccCCCCCCCccc
Confidence 9999999999987654
No 86
>KOG1548|consensus
Probab=98.21 E-value=4.4e-06 Score=77.56 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=71.4
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeC
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN--------VWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREIN 101 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~--------v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~ 101 (312)
.+...+.|||.|||.++|.+++.++|+++|-|.. |+|.++ .+|-|.+.|-..+++..|+..|+...|.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3556778999999999999999999999998843 556553 6899999999999999999999999999
Q ss_pred CeEEEEEecCCCCC
Q psy10125 102 GRRVRVEMSNPQKM 115 (312)
Q Consensus 102 g~~i~V~~a~~~~~ 115 (312)
|+.|+|+.++-+-.
T Consensus 210 g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 210 GKKLRVERAKFQMK 223 (382)
T ss_pred CcEEEEehhhhhhc
Confidence 99999999876543
No 87
>KOG1995|consensus
Probab=98.20 E-value=2.5e-05 Score=73.03 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=70.0
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN--------VWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREIN 101 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~--------v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~ 101 (312)
.....+|||-+|+..+++++|.++|.+++.|+. |+|.++ +|+-|.|.|.++..|++||..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455679999999999999999999999998853 233322 7999999999999999999999999999
Q ss_pred CeEEEEEecCCCCC
Q psy10125 102 GRRVRVEMSNPQKM 115 (312)
Q Consensus 102 g~~i~V~~a~~~~~ 115 (312)
+..|+|.++..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999887664
No 88
>KOG4205|consensus
Probab=98.19 E-value=2.5e-06 Score=79.75 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=69.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...+|||++||.++++++|++.|.+||.|..+.++.+ +++|+||.|.+++++.+++. ..-+.|.++.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 3569999999999999999999999999988888764 68999999999999998874 56789999999999998
Q ss_pred CCCC
Q psy10125 112 PQKM 115 (312)
Q Consensus 112 ~~~~ 115 (312)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 8654
No 89
>KOG4660|consensus
Probab=98.18 E-value=1.1e-06 Score=85.98 Aligned_cols=71 Identities=32% Similarity=0.514 Sum_probs=66.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 106 (312)
+...+|+|-|||.++++++|..+|+.||+|..|......++..||+|.|..+|++|+++|+...+.+++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44579999999999999999999999999999887777899999999999999999999999999999887
No 90
>KOG0151|consensus
Probab=98.01 E-value=1.1e-05 Score=80.94 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=71.8
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEE
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 106 (312)
.+..++|||+||++.++++.|-..|..||.|..++|+.. ..-++||.|-+..+|++|++.|+++.+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 355789999999999999999999999999999998742 467999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy10125 107 VEMSNPQK 114 (312)
Q Consensus 107 V~~a~~~~ 114 (312)
+-|.++-+
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99886543
No 91
>KOG4454|consensus
Probab=98.00 E-value=2.3e-06 Score=74.88 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=66.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
...||||.||...++|+-|.++|-+.|.|.+|.|... ++ ||||.|.++....-|++.+|+..+.+..++|++...
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3468999999999999999999999999999988753 34 999999999999999999999999999888876543
No 92
>KOG1190|consensus
Probab=97.76 E-value=0.00011 Score=69.75 Aligned_cols=78 Identities=18% Similarity=0.359 Sum_probs=70.9
Q ss_pred ceEEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCC
Q psy10125 38 VIYVSIVLCS-TSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKM 115 (312)
Q Consensus 38 ~~~l~V~nLp-~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 115 (312)
...|-|.||. +.+|.+.|..+|+-||+|..|+|..+.+.-|.|.|.+...|+.|+..|++..+-|+.|+|.+++-..-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 4678888886 45899999999999999999999988789999999999999999999999999999999999986543
No 93
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.66 E-value=0.00029 Score=54.85 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=60.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeC----CeEEEE
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYY--GPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREIN----GRRVRV 107 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~--G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~----g~~i~V 107 (312)
+||.|.|+|...|.++|.+++.+. |....+.|+.| ..|||||.|.+++.|..-.+.+++.... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999888653 45555566544 4799999999999999999999987664 445667
Q ss_pred EecCCCC
Q psy10125 108 EMSNPQK 114 (312)
Q Consensus 108 ~~a~~~~ 114 (312)
.+|+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 7765443
No 94
>KOG4211|consensus
Probab=97.56 E-value=0.00025 Score=68.87 Aligned_cols=72 Identities=29% Similarity=0.395 Sum_probs=61.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...|.+.+|||++|++||.++|+.+ .|..+.+.+. +.|-|||+|.+.+++++|++ .+...+..+-|.|--+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 3568889999999999999999998 5777777654 68999999999999999996 57778888888886664
No 95
>KOG1457|consensus
Probab=97.52 E-value=9.8e-05 Score=65.06 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=53.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee-CCCcEEEEEeCCHHHHHHHHHhCCCcee
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR-NPPGFGFVEFEDRRDAEDAVRGFDGREI 100 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~-~~kG~afV~f~~~~~A~~Ai~~l~g~~i 100 (312)
-.||||.||..++||++|+.+|+.|-....++|.. .-...||++|++.+.|..|+..|++..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 35899999999999999999999998877777653 2356899999999999999998887665
No 96
>KOG0226|consensus
Probab=97.46 E-value=0.00014 Score=65.13 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=67.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
..++.+||.+-|..+++.+-|..+|.+|-.....+++++ ++||+||.|.++.++..|+..|++..++.+.|++.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 355789999999999999999999999987766667654 689999999999999999999999999999887665
Q ss_pred cCC
Q psy10125 110 SNP 112 (312)
Q Consensus 110 a~~ 112 (312)
+..
T Consensus 267 S~w 269 (290)
T KOG0226|consen 267 SEW 269 (290)
T ss_pred hhH
Confidence 443
No 97
>KOG4206|consensus
Probab=97.46 E-value=0.00055 Score=60.46 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=68.0
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeC-CeEEEEEecC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREIN-GRRVRVEMSN 111 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~a~ 111 (312)
......||+.|||.+++.+.|..+|.+|.....+.++....+.|||+|.+...|..|...+++..|. ...++|.+++
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 3456789999999999999999999999999999998777899999999999999999999998887 6677776654
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.40 E-value=0.00028 Score=55.86 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=43.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCC-----ceeCCeEEEEEec
Q psy10125 40 YVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG-----REINGRRVRVEMS 110 (312)
Q Consensus 40 ~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g-----~~i~g~~i~V~~a 110 (312)
.|+|.+++..++.++|+++|++||.|..|++... .-.|||-|.++++|+.|+..+.. ..|.+..+.+++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 5788899999999999999999999999988754 44899999999999998876633 3555655555544
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.35 E-value=0.00054 Score=63.74 Aligned_cols=82 Identities=18% Similarity=0.393 Sum_probs=67.6
Q ss_pred hhhcCCCceEEEEcCCCCCCCHHH----H--HHHhhcCCCeeEEEEeeC------CCcEE--EEEeCCHHHHHHHHHhCC
Q psy10125 31 MIARYMLVIYVSIVLCSTSSTKED----I--EDAFSYYGPIKNVWVARN------PPGFG--FVEFEDRRDAEDAVRGFD 96 (312)
Q Consensus 31 ~~~~~~~~~~l~V~nLp~~~teed----L--~~~F~~~G~I~~v~i~~~------~kG~a--fV~f~~~~~A~~Ai~~l~ 96 (312)
...+..+..-|||-+|++.+..++ | .++|.+||.|..|.|.+. ..+.+ ||+|.+.++|+.+|.+.+
T Consensus 107 sniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD 186 (480)
T COG5175 107 SNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD 186 (480)
T ss_pred ccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhc
Confidence 345667788899999999887776 3 478999999999988753 12334 999999999999999999
Q ss_pred CceeCCeEEEEEecCC
Q psy10125 97 GREINGRRVRVEMSNP 112 (312)
Q Consensus 97 g~~i~g~~i~V~~a~~ 112 (312)
+..++|+.|+..+...
T Consensus 187 gs~~DGr~lkatYGTT 202 (480)
T COG5175 187 GSLLDGRVLKATYGTT 202 (480)
T ss_pred cccccCceEeeecCch
Confidence 9999999999877653
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.35 E-value=0.0013 Score=49.55 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=47.8
Q ss_pred eEEEEcCCCCCCCHHHHH----HHhhcCCC-eeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIE----DAFSYYGP-IKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~----~~F~~~G~-I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
+.|||.|||...+...|+ +++..+|. |..| . .+.|+|-|.+++.|+.|.+.|++-.+-|.+|.|.+....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 568999999998887655 55557764 4433 2 689999999999999999999999999999999987543
No 101
>KOG0120|consensus
Probab=97.30 E-value=0.0002 Score=70.66 Aligned_cols=78 Identities=17% Similarity=0.366 Sum_probs=70.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...++||++||..+++.++.+++..||.+....++.+ ++||||.+|.++.....|+..||++.+.++.|.|+.+-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 3468999999999999999999999999988888754 68999999999999999999999999999999999886
Q ss_pred CCC
Q psy10125 112 PQK 114 (312)
Q Consensus 112 ~~~ 114 (312)
...
T Consensus 368 ~g~ 370 (500)
T KOG0120|consen 368 VGA 370 (500)
T ss_pred ccc
Confidence 543
No 102
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=97.25 E-value=0.00022 Score=43.65 Aligned_cols=21 Identities=38% Similarity=1.066 Sum_probs=18.7
Q ss_pred CCccccccCCcCccccCCCCC
Q psy10125 217 PDDKCYECGGRGHYARDCRSR 237 (312)
Q Consensus 217 ~~~~C~~Cg~~GH~ar~Cp~~ 237 (312)
..-.|+.|++.|||.+|||..
T Consensus 7 ~~Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 7 PGYVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CCCEeecCCCCCccHhHCCCC
Confidence 356899999999999999984
No 103
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=97.24 E-value=0.00023 Score=38.05 Aligned_cols=17 Identities=59% Similarity=1.400 Sum_probs=12.8
Q ss_pred ccccCCCCCCCCcCCCC
Q psy10125 145 KCYECGGRGHYARDCRS 161 (312)
Q Consensus 145 ~c~~Cg~~Gh~a~~Cp~ 161 (312)
.||+|++.||++++||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 47888888888888764
No 104
>KOG4211|consensus
Probab=97.13 E-value=0.00076 Score=65.58 Aligned_cols=73 Identities=27% Similarity=0.279 Sum_probs=56.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN-VWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~-v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....|.+.+||+.+|++||.++|+-.=.+.. +.++.+ +.|-|||.|++.+.|++|+. -+...|+-+-|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 3567999999999999999999997644433 333332 67999999999999999996 4566777777777544
No 105
>KOG0106|consensus
Probab=97.07 E-value=0.00039 Score=61.68 Aligned_cols=68 Identities=31% Similarity=0.501 Sum_probs=61.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
....|.|.+|+..+.+.+|.+.|..+|.+....+. .+++||.|....+|..|+..+++..+.++.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~---~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR---RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh---ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 34678899999999999999999999999555443 689999999999999999999999999999998
No 106
>KOG0105|consensus
Probab=97.01 E-value=0.0053 Score=52.86 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=58.7
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeC--CeEEEEEe
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREIN--GRRVRVEM 109 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~--g~~i~V~~ 109 (312)
..|.|.+||++.+++||+++..+.|.|....+.++ |++.|+|...++.+-|+..|+...+. |....+.+
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 57999999999999999999999999999998876 68999999999999999998776554 44444443
No 107
>KOG4210|consensus
Probab=96.98 E-value=0.00073 Score=62.82 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=68.4
Q ss_pred ceEEE-EcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 38 VIYVS-IVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 38 ~~~l~-V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
..++| |.+|+..+++++|+.+|..+|.|..+++... .++|++|.|.....+..++.. +...+.+..+.|+...
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 9999999999999999999999999988753 589999999999999999877 7888999999999988
Q ss_pred CCCCC
Q psy10125 112 PQKMR 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
+.+..
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 87654
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.89 E-value=0.0028 Score=43.72 Aligned_cols=52 Identities=21% Similarity=0.543 Sum_probs=42.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHH
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAV 92 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai 92 (312)
+.|-|.+++++..+. +..+|.+||+|..+.+. ...-..+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 567889998776654 55699999999998876 33669999999999999885
No 109
>KOG0147|consensus
Probab=96.77 E-value=0.0023 Score=63.02 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=53.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 53 EDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 53 edL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
+||.+.-.+||.|.+|.|.+++-|+.||-|.+.++|..|+.+||+.+|.|+.|.+.+..-
T Consensus 468 edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 345555689999999999888789999999999999999999999999999999887653
No 110
>KOG1548|consensus
Probab=96.72 E-value=0.0066 Score=56.84 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=64.5
Q ss_pred cCCCceEEEEcCCC----CCCC-------HHHHHHHhhcCCCeeEEEEe-eCCCcEEEEEeCCHHHHHHHHHhCCCceeC
Q psy10125 34 RYMLVIYVSIVLCS----TSST-------KEDIEDAFSYYGPIKNVWVA-RNPPGFGFVEFEDRRDAEDAVRGFDGREIN 101 (312)
Q Consensus 34 ~~~~~~~l~V~nLp----~~~t-------eedL~~~F~~~G~I~~v~i~-~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~ 101 (312)
+.....+|.|.||= ...+ +++|.+--.+||.|..|.|. +++.|.+.|.|.+.++|..+|+.|+|..+.
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd 340 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD 340 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeec
Confidence 44456788888872 2233 23455556889999999886 468999999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q psy10125 102 GRRVRVEMSNPQK 114 (312)
Q Consensus 102 g~~i~V~~a~~~~ 114 (312)
|+.|..++...+-
T Consensus 341 gRql~A~i~DG~t 353 (382)
T KOG1548|consen 341 GRQLTASIWDGKT 353 (382)
T ss_pred ceEEEEEEeCCcc
Confidence 9999988876544
No 111
>KOG0129|consensus
Probab=96.65 E-value=0.0037 Score=61.23 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=48.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee--------CCCc---EEEEEeCCHHHHHHHHHhC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR--------NPPG---FGFVEFEDRRDAEDAVRGF 95 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~--------~~kG---~afV~f~~~~~A~~Ai~~l 95 (312)
+.-+.+|||++||+.++|++|...|..||.+. |++.. .++| |+|+.|+++.+++.-|.+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 34578999999999999999999999999873 44442 1577 9999999999888766543
No 112
>KOG1456|consensus
Probab=96.59 E-value=0.01 Score=56.21 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=68.7
Q ss_pred CceEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 37 LVIYVSIVLCSTS-STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 37 ~~~~l~V~nLp~~-~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
....+.|-+|+.. ++-+.|..+|-.||.|..|++++...|-|.|++.+..+.+.|+..||+..+-|.+|.|.+++..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 3567888999865 6678899999999999999999888899999999999999999999999999999999888653
No 113
>KOG1190|consensus
Probab=96.57 E-value=0.0057 Score=58.42 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=64.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCe-EEEEEecCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN-VWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGR-RVRVEMSNP 112 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~-v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~-~i~V~~a~~ 112 (312)
..+.+|.+.|+|.+++|++|+.+|.+-|...+ .+.....+-+|++.+.+.++|..|+..++.+.++.. .++|.+++.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 45679999999999999999999999887644 344434577999999999999999999999888754 899999875
No 114
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=96.56 E-value=0.0017 Score=42.48 Aligned_cols=19 Identities=32% Similarity=1.052 Sum_probs=17.4
Q ss_pred CccccccCCcCccccCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRS 236 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~ 236 (312)
...|.+|++.|||..+||+
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 4579999999999999997
No 115
>KOG1456|consensus
Probab=96.54 E-value=0.0094 Score=56.39 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=62.1
Q ss_pred EEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCC--eEEEEEecCCCC
Q psy10125 42 SIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREING--RRVRVEMSNPQK 114 (312)
Q Consensus 42 ~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~a~~~~ 114 (312)
-|-|--+.+|.+-|..+--..|+|..|.|.+..--.|.|+|++.+.|++|.++||+..|-. -+|+|+++++.+
T Consensus 126 TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 126 TILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred EeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 3445456789999999999999999999987756689999999999999999999988753 579999999854
No 116
>KOG4849|consensus
Probab=96.42 E-value=0.0024 Score=59.81 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCC--eeEEEEee-----CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGP--IKNVWVAR-----NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~--I~~v~i~~-----~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
..-+||+||-|++|++||.+++...|- +.++++.. .+||||+|...+..+..+.++.|....|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 346899999999999999999887763 23333322 37999999999999999999999999998876544
No 117
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.34 E-value=0.027 Score=44.08 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=49.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEE------------EeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeE-
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVW------------VARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRR- 104 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~------------i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~- 104 (312)
.+-|.|-++|+.. ...|-+.|++||.|.+.. -.........|.|+++.+|.+||. .|+..+.|..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 3568888999884 466778999999997764 111235688999999999999995 6999998754
Q ss_pred EEEEec
Q psy10125 105 VRVEMS 110 (312)
Q Consensus 105 i~V~~a 110 (312)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 445554
No 118
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.31 E-value=0.021 Score=47.55 Aligned_cols=57 Identities=26% Similarity=0.513 Sum_probs=45.3
Q ss_pred HHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 54 DIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 54 dL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
+|-+.|+.||.+.-+++. .+.-+|+|.+...|.+|+ .+++..+.|+.|+|.+..+..
T Consensus 52 ~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccH
Confidence 567889999999888877 457799999999999999 589999999999999987754
No 119
>KOG0335|consensus
Probab=96.22 E-value=0.0033 Score=61.84 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=40.8
Q ss_pred ccccccCCcCccccCCCCCCCC---CCCCCCCCcccCCc---ccccccccccccccCcccccccC
Q psy10125 219 DKCYECGGRGHYARDCRSRRSG---GGGRRRSAVSHAEV---APCQTGIEYIISKYSAVSHAEVA 277 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~~~~~---~~~~~~~~~~y~e~---~~~~~g~~f~~~~~~~~~~~~~~ 277 (312)
..|.+|++.||.++.|.+.... ....+.++..|.|. ..+++|||| |||++||| +++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~nf--d~~~~i~v-~~~ 65 (482)
T KOG0335|consen 4 RSGRNCGEGGPRPKHCGNSTMEEEKQKGKKGPLKAYLEQAFFLGISTGINF--DKYNDIPV-KVS 65 (482)
T ss_pred ccccccCCCCCCCcccccccccccccccccCCcccchhhhhhhccchhhcc--CCccceee-ecc
Confidence 5699999999999999986511 12222223455443 559999999 99999999 554
No 120
>KOG4307|consensus
Probab=96.14 E-value=0.018 Score=58.40 Aligned_cols=71 Identities=31% Similarity=0.441 Sum_probs=60.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIK-NVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~-~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
+.|-+.|+|++++-+||.++|..|-.+. +|.+.++ +.|-+.|.|++.++|.+|...|++..|..+.|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788899999999999999999996553 3444332 689999999999999999999999999999988764
No 121
>KOG2193|consensus
Probab=96.08 E-value=0.0051 Score=58.96 Aligned_cols=74 Identities=30% Similarity=0.386 Sum_probs=60.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCC-ceeCCeEEEEEecCCCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYY--GPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG-REINGRRVRVEMSNPQKM 115 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~--G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g-~~i~g~~i~V~~a~~~~~ 115 (312)
.++|++||.+.++..||+.+|... +--..+.+. .||+||++.+...|.+|++.+++ .++.|+++.|+.+-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k---~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK---SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee---cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 478999999999999999999764 211222232 68999999999999999999988 578899999998877654
No 122
>smart00343 ZnF_C2HC zinc finger.
Probab=96.02 E-value=0.0028 Score=36.94 Aligned_cols=18 Identities=61% Similarity=1.385 Sum_probs=16.0
Q ss_pred cccccCCcCccccCCCCC
Q psy10125 220 KCYECGGRGHYARDCRSR 237 (312)
Q Consensus 220 ~C~~Cg~~GH~ar~Cp~~ 237 (312)
.|++|++.||++++||..
T Consensus 1 ~C~~CG~~GH~~~~C~~~ 18 (26)
T smart00343 1 KCYNCGKEGHIARDCPKX 18 (26)
T ss_pred CCccCCCCCcchhhCCcc
Confidence 499999999999999843
No 123
>KOG0120|consensus
Probab=95.74 E-value=0.03 Score=55.59 Aligned_cols=58 Identities=26% Similarity=0.480 Sum_probs=49.4
Q ss_pred HHHHhhcCCCeeEEEEeeC--------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 55 IEDAFSYYGPIKNVWVARN--------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 55 L~~~F~~~G~I~~v~i~~~--------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
++..+++||.|..|.+.+. ..|-.||+|.+.++++.|++.|+|..+.++.|...|...
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 4455678999999998764 357889999999999999999999999999998887654
No 124
>KOG1365|consensus
Probab=95.56 E-value=0.012 Score=55.79 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=62.4
Q ss_pred hhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCC-eeE--EEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCe
Q psy10125 31 MIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGP-IKN--VWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGR 103 (312)
Q Consensus 31 ~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~-I~~--v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~ 103 (312)
.........-|.+.+||++.|.+||.++|..|-. |.. |.++.+ +.|-|||+|.+.+.|.+|...-+.+....+
T Consensus 273 ~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~R 352 (508)
T KOG1365|consen 273 LVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSR 352 (508)
T ss_pred cCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccc
Confidence 3344444678999999999999999999998864 322 555543 689999999999999999987777766677
Q ss_pred EEEEEecC
Q psy10125 104 RVRVEMSN 111 (312)
Q Consensus 104 ~i~V~~a~ 111 (312)
-|.|-.+.
T Consensus 353 YiEvfp~S 360 (508)
T KOG1365|consen 353 YIEVFPCS 360 (508)
T ss_pred eEEEeecc
Confidence 77765443
No 125
>KOG1855|consensus
Probab=95.54 E-value=0.013 Score=56.24 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=55.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC------------------CCcEEEEEeCCHHHHHHHHHhCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN------------------PPGFGFVEFEDRRDAEDAVRGFDG 97 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~------------------~kG~afV~f~~~~~A~~Ai~~l~g 97 (312)
..+.+|.+-|||.+-..+-|.++|+.+|.|+.|+|... .+-+|+|+|+..++|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45789999999999999999999999999999998642 256899999999999999987755
Q ss_pred ce
Q psy10125 98 RE 99 (312)
Q Consensus 98 ~~ 99 (312)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 126
>KOG0112|consensus
Probab=95.45 E-value=0.02 Score=59.63 Aligned_cols=78 Identities=19% Similarity=0.375 Sum_probs=68.4
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCC--eEEEEEecCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREING--RRVRVEMSNP 112 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~a~~ 112 (312)
....+.++|++|..++....|..+|..||.|..|.+-. ..-||+|.|++...+++|+..|-+..|++ +.+.|.++.+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 34568899999999999999999999999999988763 36799999999999999999999999875 6788888875
Q ss_pred C
Q psy10125 113 Q 113 (312)
Q Consensus 113 ~ 113 (312)
.
T Consensus 531 ~ 531 (975)
T KOG0112|consen 531 P 531 (975)
T ss_pred C
Confidence 3
No 127
>KOG0129|consensus
Probab=95.24 E-value=0.05 Score=53.53 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=52.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHh
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFS-YYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRG 94 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~-~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~ 94 (312)
.....||||++||--+|.++|..+|. -||.|.-+-|-.| ++|-|=|+|.+..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34468999999999999999999998 7999988877655 799999999999999999864
No 128
>KOG2314|consensus
Probab=94.95 E-value=0.047 Score=54.27 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=58.9
Q ss_pred ceEEEEcCCCCCCC--HH----HHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeC-CeEEE
Q psy10125 38 VIYVSIVLCSTSST--KE----DIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREIN-GRRVR 106 (312)
Q Consensus 38 ~~~l~V~nLp~~~t--ee----dL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~ 106 (312)
..-|+|-|.|---. .+ -|..+|+++|+|..+.++.+ .+||.|++|.+..+|+.|++.||+..|+ .++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 56789999884322 22 35678999999988888743 6899999999999999999999999886 56677
Q ss_pred EEecCC
Q psy10125 107 VEMSNP 112 (312)
Q Consensus 107 V~~a~~ 112 (312)
|...+.
T Consensus 138 v~~f~d 143 (698)
T KOG2314|consen 138 VRLFKD 143 (698)
T ss_pred eehhhh
Confidence 765544
No 129
>KOG2202|consensus
Probab=94.92 E-value=0.012 Score=52.97 Aligned_cols=60 Identities=33% Similarity=0.506 Sum_probs=49.3
Q ss_pred HHHHHHhh-cCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 53 EDIEDAFS-YYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 53 edL~~~F~-~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
+||...|+ +||+|.++.|-.+ -.|-++|.|...++|++|+..||+.++.|+.|..++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444555 8999988866533 478899999999999999999999999999999887754
No 130
>KOG3152|consensus
Probab=94.81 E-value=0.02 Score=51.61 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=57.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--C---------------CcEEEEEeCCHHHHHHHHHhCCCce
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--P---------------PGFGFVEFEDRRDAEDAVRGFDGRE 99 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--~---------------kG~afV~f~~~~~A~~Ai~~l~g~~ 99 (312)
....||++++|+.+...-|+++|+.||.|-.|.|... + ---+.|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999888632 0 1235789999999999999999999
Q ss_pred eCCeE
Q psy10125 100 INGRR 104 (312)
Q Consensus 100 i~g~~ 104 (312)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.67 E-value=0.21 Score=35.58 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=42.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcC----CCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYY----GPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF 95 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~----G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l 95 (312)
.+|+|.+++ +++.+||+.+|..| + ...|.++-+. -+-|.|.+...|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 579999996 57888999999999 4 3567777553 4788999999999999764
No 132
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.35 E-value=0.22 Score=37.59 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=41.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFD 96 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~ 96 (312)
...-.||. +|.+....||.++|+.||.|.--.|. -.-|||.....+.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 34556675 99999999999999999998544443 3579999999999999887764
No 133
>KOG0112|consensus
Probab=93.66 E-value=0.017 Score=60.17 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=64.8
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
.....+.+||++||+..+++.+|+.+|..+|.|..|+|... -..|+||.|.+.+.+-.|...+.+..|....+++-
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 44556789999999999999999999999999999998753 24699999999999999988888877765555555
Q ss_pred ec
Q psy10125 109 MS 110 (312)
Q Consensus 109 ~a 110 (312)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 54
No 134
>KOG0128|consensus
Probab=93.46 E-value=0.036 Score=57.48 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=67.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
...|+|.|+|+..|.++|+.++..+|.++.+.++.. ++|.|+|.|.++.++..++...+...+.-..+.|+.+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 568999999999999999999999999998877642 7999999999999999999888888888888888887663
No 135
>KOG0115|consensus
Probab=93.34 E-value=0.083 Score=47.78 Aligned_cols=66 Identities=24% Similarity=0.426 Sum_probs=54.0
Q ss_pred hhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCC
Q psy10125 31 MIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFD 96 (312)
Q Consensus 31 ~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~ 96 (312)
...++.....|||.||+..++.+.|...|+.||.|....++.+ ..+-++|.|.....|.+|+....
T Consensus 24 lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 24 LRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred eEEEeeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 3345555588999999999999999999999999977655543 56788999999999999987663
No 136
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=93.26 E-value=0.068 Score=33.51 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=13.7
Q ss_pred ccccccCCcCccccCCCCCCCC
Q psy10125 219 DKCYECGGRGHYARDCRSRRSG 240 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~~~~~ 240 (312)
..|++|++.-|||+||-...+-
T Consensus 3 ~~CprC~kg~Hwa~~C~sk~d~ 24 (36)
T PF14787_consen 3 GLCPRCGKGFHWASECRSKTDV 24 (36)
T ss_dssp -C-TTTSSSCS-TTT---TCCC
T ss_pred ccCcccCCCcchhhhhhhhhcc
Confidence 4699999999999999876544
No 137
>KOG4676|consensus
Probab=93.14 E-value=0.13 Score=49.13 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=54.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 40 YVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 40 ~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
.|.|.||++.+|.++++.+|...|.|..+.|+.. ..-.+||-|.+...+..|-. |..+.+-+..|.|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 6899999999999999999999999999988742 25689999999999888764 55555555544443
No 138
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.09 E-value=1.5 Score=45.33 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=53.6
Q ss_pred ceEEEEc-CCCCCCCHHHHHHHhhcCCCee-----EEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 38 VIYVSIV-LCSTSSTKEDIEDAFSYYGPIK-----NVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 38 ~~~l~V~-nLp~~~teedL~~~F~~~G~I~-----~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
+.++||. +-...++..+|..++..-+.|. .|+|. ..|.||+.... .+...+..|+...+.++.|.|+.+.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~---~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF---ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe---CCceEEEcChh-hHHHHHHHhccccccCCceEEEECC
Confidence 3456553 3356789999999998877664 34555 56899998764 4677888899999999999999875
Q ss_pred CC
Q psy10125 112 PQ 113 (312)
Q Consensus 112 ~~ 113 (312)
..
T Consensus 562 ~~ 563 (629)
T PRK11634 562 DA 563 (629)
T ss_pred CC
Confidence 43
No 139
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.07 E-value=0.06 Score=49.62 Aligned_cols=27 Identities=33% Similarity=0.962 Sum_probs=23.0
Q ss_pred CCCCCccccccCCcCccccCCCCCCCC
Q psy10125 214 PFNPDDKCYECGGRGHYARDCRSRRSG 240 (312)
Q Consensus 214 ~~~~~~~C~~Cg~~GH~ar~Cp~~~~~ 240 (312)
|-.+.-.||+||+.|||-..||...++
T Consensus 172 ppPpgY~CyRCGqkgHwIqnCpTN~Dp 198 (427)
T COG5222 172 PPPPGYVCYRCGQKGHWIQNCPTNQDP 198 (427)
T ss_pred CCCCceeEEecCCCCchhhcCCCCCCC
Confidence 334567899999999999999998877
No 140
>KOG4307|consensus
Probab=92.90 E-value=0.24 Score=50.61 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=57.2
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCee--EEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIK--NVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~--~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
..|.+.|||+.+...||+.+|+-. .|. -|+|+-.-.|-|||.|.+.++|..|+. .++..|.+..+++-++.
T Consensus 3 VIIRLqnLP~tAga~DIR~FFSGL-~IPdGgVHIIGGe~GeaFI~FsTDeDARlaM~-kdr~~i~g~~VrLlLSS 75 (944)
T KOG4307|consen 3 VIIRLQNLPMTAGASDIRTFFSGL-KIPDGGVHIIGGEEGEAFIGFSTDEDARLAMT-KDRLMIHGAEVRLLLSS 75 (944)
T ss_pred eEEEecCCcccccchHHHHhhccc-ccCCCceEEecccccceEEEecccchhhhhhh-hcccceecceEEEEecc
Confidence 457889999999999999999865 332 366776668999999999999999985 46778888887776654
No 141
>KOG0119|consensus
Probab=92.86 E-value=0.065 Score=52.55 Aligned_cols=42 Identities=26% Similarity=0.577 Sum_probs=32.2
Q ss_pred cccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCCCccccccCCcCccccCCCCC
Q psy10125 172 LCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSR 237 (312)
Q Consensus 172 ~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~~~~C~~Cg~~GH~ar~Cp~~ 237 (312)
.|.+||..+|...+||..- ..-...|+.|+.-||+++||+..
T Consensus 263 ~c~~cg~~~H~q~~cp~r~------------------------~~~~n~c~~cg~~gH~~~dc~~~ 304 (554)
T KOG0119|consen 263 ACRNCGSTGHKQYDCPGRI------------------------PNTTNVCKICGPLGHISIDCKVN 304 (554)
T ss_pred cccccCCCccccccCCccc------------------------ccccccccccCCcccccccCCCc
Confidence 5788888888888887420 01123799999999999999987
No 142
>KOG1996|consensus
Probab=92.77 E-value=0.36 Score=44.60 Aligned_cols=59 Identities=29% Similarity=0.376 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCCCeeEEEEeeC------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 52 KEDIEDAFSYYGPIKNVWVARN------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 52 eedL~~~F~~~G~I~~v~i~~~------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
+++++....+||.|..|.|... ..--.||+|...++|.+|+..||+..|+|+.+..-|.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 3466777899999998877643 2346799999999999999999999999998876654
No 143
>KOG1365|consensus
Probab=92.39 E-value=0.38 Score=45.96 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=47.9
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCC----eeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeE
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGP----IKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRR 104 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~----I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 104 (312)
.-|.+.+||++.|+.|+.++|..-.. ...|.+++. +.|-|||.|.++++|+.|+.. |...|+.+-
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRY 234 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRY 234 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHH
Confidence 46788999999999999999974322 234444432 579999999999999999964 444444443
No 144
>KOG2416|consensus
Probab=92.37 E-value=0.11 Score=52.01 Aligned_cols=78 Identities=9% Similarity=0.100 Sum_probs=61.7
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCcee---CCeEEEEEe
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYY-GPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREI---NGRRVRVEM 109 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~-G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i---~g~~i~V~~ 109 (312)
+-..++.|||.||-.-.|.-+|+.++.+- |.|... ++-.-+..+||.|.+.++|.+...+|++... +.+.|.|.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 44567899999999999999999999954 455555 3323477899999999999999999999654 457788887
Q ss_pred cCC
Q psy10125 110 SNP 112 (312)
Q Consensus 110 a~~ 112 (312)
...
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 754
No 145
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=92.01 E-value=0.087 Score=32.32 Aligned_cols=20 Identities=35% Similarity=0.992 Sum_probs=16.6
Q ss_pred CCccccCCCCCCCCcCCCCC
Q psy10125 143 DDKCYECGGRGHYARDCRSR 162 (312)
Q Consensus 143 ~~~c~~Cg~~Gh~a~~Cp~~ 162 (312)
...|+.|+..|||..+||..
T Consensus 8 ~Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 8 GYVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CCEeecCCCCCccHhHCCCC
Confidence 34599999999999999974
No 146
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.66 E-value=0.93 Score=33.17 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=40.7
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhcCCCe-----eEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 40 YVSIV-LCSTSSTKEDIEDAFSYYGPI-----KNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 40 ~l~V~-nLp~~~teedL~~~F~~~G~I-----~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
++||. +--..++..+|..+|...+.| -.++|. .-|+||+.... .|..++..|++..+.|+.++|+.+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45552 334578899999999887655 456666 56999998865 678888999999999999999864
No 147
>KOG2068|consensus
Probab=91.40 E-value=0.068 Score=50.06 Aligned_cols=81 Identities=21% Similarity=0.403 Sum_probs=62.9
Q ss_pred hcCCCceEEEEcCCCCCCCHHH-HH--HHhhcCCCeeEEEEeeCC--------CcEEEEEeCCHHHHHHHHHhCCCceeC
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKED-IE--DAFSYYGPIKNVWVARNP--------PGFGFVEFEDRRDAEDAVRGFDGREIN 101 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teed-L~--~~F~~~G~I~~v~i~~~~--------kG~afV~f~~~~~A~~Ai~~l~g~~i~ 101 (312)
.++.....+||-+|+..+..++ |+ ..|.+||.|..|.+..++ -.-++|+|...++|..+|...+++.+.
T Consensus 72 ~rvVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 72 VRVVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred chhhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 4555667889999998765544 43 568999999988876542 234799999999999999999999999
Q ss_pred CeEEEEEecCCC
Q psy10125 102 GRRVRVEMSNPQ 113 (312)
Q Consensus 102 g~~i~V~~a~~~ 113 (312)
++.++..+...+
T Consensus 152 g~~lka~~gttk 163 (327)
T KOG2068|consen 152 GRALKASLGTTK 163 (327)
T ss_pred hhhhHHhhCCCc
Confidence 988776665543
No 148
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.94 E-value=1.2 Score=32.07 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=43.9
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 49 SSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 49 ~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
.++-++|+..|.+|.- . +|..+..|| ||.|.+..+|+++....++..+...++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999964 2 333455665 89999999999999999998888777654
No 149
>KOG0128|consensus
Probab=90.10 E-value=0.034 Score=57.60 Aligned_cols=68 Identities=26% Similarity=0.264 Sum_probs=55.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe-----eCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEE
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVA-----RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~-----~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i 105 (312)
..++||.||+..+.+.+|...|..++.+..+.+. .+.+|++||+|..++.+.+||.......++...+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v 739 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISV 739 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhh
Confidence 4679999999999999999999999988766554 2368999999999999999997666555553333
No 150
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.03 E-value=1.4 Score=38.31 Aligned_cols=63 Identities=27% Similarity=0.361 Sum_probs=45.9
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCC--CceeCCeEEEEEecCCCC
Q psy10125 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFD--GREINGRRVRVEMSNPQK 114 (312)
Q Consensus 51 teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~--g~~i~g~~i~V~~a~~~~ 114 (312)
..+.|+++|..|+.+..+...+ +-+-..|.|.+.++|..|...|+ +..+.+..++|-++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999999999988776653 34567899999999999999999 899999999999885443
No 151
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.00 E-value=0.53 Score=40.68 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=49.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhc-CCCe---eEEEEeeC-------CCcEEEEEeCCHHHHHHHHHhCCCceeCC---
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSY-YGPI---KNVWVARN-------PPGFGFVEFEDRRDAEDAVRGFDGREING--- 102 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~-~G~I---~~v~i~~~-------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g--- 102 (312)
...+|.|.+||+.+|++++.+.++. ++.. ..+.-... ...-|||.|.+.+++..-...+++..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3469999999999999999887776 5554 22221111 24679999999999999999999976642
Q ss_pred --eEEEEEecCC
Q psy10125 103 --RRVRVEMSNP 112 (312)
Q Consensus 103 --~~i~V~~a~~ 112 (312)
....|+++.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3456777655
No 152
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=89.76 E-value=0.13 Score=34.79 Aligned_cols=18 Identities=33% Similarity=1.010 Sum_probs=16.4
Q ss_pred ccccccCCcCccccCCCC
Q psy10125 219 DKCYECGGRGHYARDCRS 236 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~ 236 (312)
..|++||.-||..++||.
T Consensus 32 ~~C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 32 RFCFHCGRIGHSDKECPK 49 (49)
T ss_pred hhhcCCCCcCcCHhHcCC
Confidence 569999999999999984
No 153
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=89.72 E-value=0.17 Score=32.62 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=18.1
Q ss_pred ccccccCCcCccc--cCCCCCCCC
Q psy10125 219 DKCYECGGRGHYA--RDCRSRRSG 240 (312)
Q Consensus 219 ~~C~~Cg~~GH~a--r~Cp~~~~~ 240 (312)
..|-+||+-||++ +.||.....
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~~~ 25 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYCWS 25 (40)
T ss_pred ccccccccccccccCccCCCCCCC
Confidence 4699999999997 689987643
No 154
>KOG0119|consensus
Probab=89.63 E-value=0.15 Score=50.04 Aligned_cols=43 Identities=28% Similarity=0.615 Sum_probs=35.2
Q ss_pred CccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcc
Q psy10125 144 DKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQK 189 (312)
Q Consensus 144 ~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~ 189 (312)
..|.+|+..+|-..+||.. --.. ...|.+||.-+|..++|+..
T Consensus 262 ~~c~~cg~~~H~q~~cp~r-~~~~--~n~c~~cg~~gH~~~dc~~~ 304 (554)
T KOG0119|consen 262 RACRNCGSTGHKQYDCPGR-IPNT--TNVCKICGPLGHISIDCKVN 304 (554)
T ss_pred ccccccCCCccccccCCcc-cccc--cccccccCCcccccccCCCc
Confidence 4699999999999999975 1111 12799999999999999876
No 155
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.62 E-value=1.6 Score=36.31 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=50.6
Q ss_pred CCceEEEEcCCCCCCC----HHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 36 MLVIYVSIVLCSTSST----KEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~t----eedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....+|.|.=|..++. ...+...++.||+|.+|.+.. +.-|.|.|.+..+|=.|+.+++. ...|..+...+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 3456788875555443 334556678999999988763 56799999999999999998865 44555555444
No 156
>KOG0107|consensus
Probab=89.32 E-value=0.42 Score=41.05 Aligned_cols=54 Identities=37% Similarity=0.708 Sum_probs=35.7
Q ss_pred CCccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCCCccccccCCcCccccCCCCC
Q psy10125 169 RPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSR 237 (312)
Q Consensus 169 ~~~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~~~~C~~Cg~~GH~ar~Cp~~ 237 (312)
.+++-..||....+..+....+.++.++... . +| ...||+||+.||+.+.|-+.
T Consensus 66 ~LDG~~~cG~r~rVE~S~G~~r~~r~gg~~~-~---~g-----------~~~~~r~G~rg~~~r~~~~s 119 (195)
T KOG0107|consen 66 YLDGKDICGSRIRVELSTGRPRGSRRGGSRP-P---RG-----------RGFCYRCGERGHIGRNCKDS 119 (195)
T ss_pred hcCCccccCceEEEEeecCCccccccCCCCC-c---cc-----------ccccccCCCccccccccccc
Confidence 4566778999999988876654333222111 0 11 22399999999999999873
No 157
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=88.59 E-value=0.31 Score=31.92 Aligned_cols=19 Identities=32% Similarity=1.052 Sum_probs=16.2
Q ss_pred CCccccCCCCCCCCcCCCC
Q psy10125 143 DDKCYECGGRGHYARDCRS 161 (312)
Q Consensus 143 ~~~c~~Cg~~Gh~a~~Cp~ 161 (312)
...|.+|++.|||..+|++
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 3459999999999999994
No 158
>KOG2591|consensus
Probab=87.43 E-value=0.92 Score=45.36 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=49.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCC--ceeCCeEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSY--YGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG--REINGRRV 105 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~--~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g--~~i~g~~i 105 (312)
....-|.|.-+|+++..|+|+.+|.. +-.+.++.+-.+. -=||+|++..+|+.|.+.|.. +.|.|+.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 44456678999999999999999975 5566666654332 238999999999998876633 45555544
No 159
>smart00343 ZnF_C2HC zinc finger.
Probab=85.69 E-value=0.44 Score=27.49 Aligned_cols=16 Identities=63% Similarity=1.497 Sum_probs=12.8
Q ss_pred cccCCCCCCCCcCCCC
Q psy10125 146 CYECGGRGHYARDCRS 161 (312)
Q Consensus 146 c~~Cg~~Gh~a~~Cp~ 161 (312)
|++|+..+|++++|+.
T Consensus 2 C~~CG~~GH~~~~C~~ 17 (26)
T smart00343 2 CYNCGKEGHIARDCPK 17 (26)
T ss_pred CccCCCCCcchhhCCc
Confidence 7888888888888874
No 160
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=84.10 E-value=0.62 Score=29.27 Aligned_cols=19 Identities=42% Similarity=0.941 Sum_probs=11.7
Q ss_pred CccccCCCCCCCCcCCCCC
Q psy10125 144 DKCYECGGRGHYARDCRSR 162 (312)
Q Consensus 144 ~~c~~Cg~~Gh~a~~Cp~~ 162 (312)
..|++|++..||+.+|...
T Consensus 3 ~~CprC~kg~Hwa~~C~sk 21 (36)
T PF14787_consen 3 GLCPRCGKGFHWASECRSK 21 (36)
T ss_dssp -C-TTTSSSCS-TTT---T
T ss_pred ccCcccCCCcchhhhhhhh
Confidence 3599999999999999864
No 161
>KOG2253|consensus
Probab=83.98 E-value=0.57 Score=47.66 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=62.0
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
+......+|||+|+...+..+-++.++..+|.|..+.... |+|.+|........|+..+....+++..+.+..
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3445567899999999999999999999999987765552 999999999999999999998889888776554
No 162
>KOG2135|consensus
Probab=82.85 E-value=0.95 Score=44.41 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=56.0
Q ss_pred EEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 41 VSIVLCSTSS-TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 41 l~V~nLp~~~-teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
|-+.-.+... |-++|..+|++||.|..+.+-.. .-.|.|+|.+..+|-.|. ..++..|+++.|+|.|-.+.+
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 3333444443 45789999999999999887643 457999999999996665 368899999999999988744
No 163
>KOG4285|consensus
Probab=82.65 E-value=4.8 Score=37.55 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=47.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeE
Q psy10125 40 YVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRR 104 (312)
Q Consensus 40 ~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 104 (312)
=|-|-++++..+ .-|..+|++||.|++.... ..--+-+|-|.+..+|++||. .++..|++..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 355567777644 4567899999999776554 234588999999999999995 6888888754
No 164
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=81.16 E-value=13 Score=29.58 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=45.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeeCC---CcEEEEEeCCHHHHHHHHHhCCCceeCC
Q psy10125 40 YVSIVLCSTSSTKEDIEDAFSYYG-PIKNVWVARNP---PGFGFVEFEDRRDAEDAVRGFDGREING 102 (312)
Q Consensus 40 ~l~V~nLp~~~teedL~~~F~~~G-~I~~v~i~~~~---kG~afV~f~~~~~A~~Ai~~l~g~~i~g 102 (312)
.+.+...|..++.++|..+.+.+- .|..++|+++. +=.+.+.|.+..+|..-...+||+.+..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444455556667766655553 46678888763 4478899999999999999999988764
No 165
>KOG4660|consensus
Probab=76.72 E-value=5.2 Score=40.14 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=55.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCcee---C-CeEEEE
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFS-YYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI---N-GRRVRV 107 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~-~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i---~-g~~i~V 107 (312)
.+++-|.|++...|...|.+... ..|....+.+..| ..|||||.|.+++++..+.++++++.. . .+...+
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 46777888887777776655533 3566666666544 479999999999999999999998643 2 345577
Q ss_pred EecCCCCC
Q psy10125 108 EMSNPQKM 115 (312)
Q Consensus 108 ~~a~~~~~ 115 (312)
.|++-+..
T Consensus 468 tYArIQGk 475 (549)
T KOG4660|consen 468 TYARIQGK 475 (549)
T ss_pred ehhhhhch
Confidence 77766553
No 166
>KOG4574|consensus
Probab=74.04 E-value=2.5 Score=44.38 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=64.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCcee--CCeEEEEEecCCCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREI--NGRRVRVEMSNPQKM 115 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i--~g~~i~V~~a~~~~~ 115 (312)
..+.++-|..-..+..-|..++++||.+...+..++ --+|.|+|...+.|-.|+.+++++++ .|-..+|.+++.-+.
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 345566777777888889999999999999988765 45899999999999999999999766 466788999887664
Q ss_pred C
Q psy10125 116 R 116 (312)
Q Consensus 116 ~ 116 (312)
.
T Consensus 377 ~ 377 (1007)
T KOG4574|consen 377 Y 377 (1007)
T ss_pred c
Confidence 4
No 167
>KOG4410|consensus
Probab=71.32 E-value=5.5 Score=36.87 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=37.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEeeCCCcEEEEEeCCHH
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIK-NVWVARNPPGFGFVEFEDRR 86 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~-~v~i~~~~kG~afV~f~~~~ 86 (312)
.+.|||+||+.++...||+..+.+-+.+. .+.+ ..+.+-+|++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCcc
Confidence 56799999999999999999999887542 3333 345788999998754
No 168
>KOG4210|consensus
Probab=67.65 E-value=2.8 Score=39.11 Aligned_cols=76 Identities=11% Similarity=0.030 Sum_probs=57.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee-----CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR-----NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~-----~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...++|++++.+.+.+.++..++..+|......+.. ..++++++.|...+.+..++.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 367899999999999998999999999776655432 268999999999999999997554445555555444443
Q ss_pred C
Q psy10125 112 P 112 (312)
Q Consensus 112 ~ 112 (312)
.
T Consensus 167 ~ 167 (285)
T KOG4210|consen 167 R 167 (285)
T ss_pred c
Confidence 3
No 169
>KOG2318|consensus
Probab=61.91 E-value=39 Score=34.38 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=58.4
Q ss_pred CCceEEEEcCCCCC-CCHHHHHHHhhcC----CCeeEEEEeeC--------------C----------------------
Q psy10125 36 MLVIYVSIVLCSTS-STKEDIEDAFSYY----GPIKNVWVARN--------------P---------------------- 74 (312)
Q Consensus 36 ~~~~~l~V~nLp~~-~teedL~~~F~~~----G~I~~v~i~~~--------------~---------------------- 74 (312)
..+..|-|.||+|. +..+||..+|..| |.|.+|.|... +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 44678999999987 7789999998876 57888887520 1
Q ss_pred ----------------CcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 75 ----------------PGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 75 ----------------kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.=||.|+|.+...|.......+|+.+......+.+
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 12789999999999999999999999866555544
No 170
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=61.53 E-value=3.8 Score=27.49 Aligned_cols=16 Identities=38% Similarity=1.140 Sum_probs=14.6
Q ss_pred ccccCCCCCCCCcCCC
Q psy10125 145 KCYECGGRGHYARDCR 160 (312)
Q Consensus 145 ~c~~Cg~~Gh~a~~Cp 160 (312)
.|+.|+..||...+||
T Consensus 33 ~C~~C~~~gH~~~~C~ 48 (49)
T PF14392_consen 33 FCFHCGRIGHSDKECP 48 (49)
T ss_pred hhcCCCCcCcCHhHcC
Confidence 3999999999999997
No 171
>KOG0804|consensus
Probab=59.69 E-value=24 Score=34.81 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=55.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeeCC---CcEEEEEeCCHHHHHHHHHhCCCceeCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYG-PIKNVWVARNP---PGFGFVEFEDRRDAEDAVRGFDGREING 102 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G-~I~~v~i~~~~---kG~afV~f~~~~~A~~Ai~~l~g~~i~g 102 (312)
++.|+|-.+|..+|.-||-.+...+- .|.+++++++. +=..+|.|.+..+|..-...+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999998887654 47888888862 4467899999999999999999988764
No 172
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=59.23 E-value=5.8 Score=36.93 Aligned_cols=23 Identities=35% Similarity=1.110 Sum_probs=19.2
Q ss_pred CCCccccCCCCCCCCcCCCCCCC
Q psy10125 142 PDDKCYECGGRGHYARDCRSRRS 164 (312)
Q Consensus 142 ~~~~c~~Cg~~Gh~a~~Cp~~~~ 164 (312)
+...||+||..|||-.+||....
T Consensus 175 pgY~CyRCGqkgHwIqnCpTN~D 197 (427)
T COG5222 175 PGYVCYRCGQKGHWIQNCPTNQD 197 (427)
T ss_pred CceeEEecCCCCchhhcCCCCCC
Confidence 35569999999999999997543
No 173
>KOG0314|consensus
Probab=59.14 E-value=23 Score=35.08 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=47.9
Q ss_pred ccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccc
Q psy10125 145 KCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYEC 224 (312)
Q Consensus 145 ~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~~~~C~~C 224 (312)
.+.+++..+|..+.+..... ..|..|..+.|..-.|..-.. ...+..|++|
T Consensus 114 ~~~~~~~~~~~~~~~t~~~~------~~~~~~~~~~~~iq~~~~~g~-----------------------Pppsy~c~rc 164 (448)
T KOG0314|consen 114 MNGRMGGRGFGMRRQTPPPG------YVCHRCNSPGHFIQHCSTNGS-----------------------PPPSYKCVKC 164 (448)
T ss_pred hccccccCCcccccCCCccc------ceeeecccCccccccccccCC-----------------------CCCCcceecC
Confidence 57788888888887744321 357777777777666553210 2346789999
Q ss_pred CCcCccccCCCCCCCC
Q psy10125 225 GGRGHYARDCRSRRSG 240 (312)
Q Consensus 225 g~~GH~ar~Cp~~~~~ 240 (312)
.++|||...||.....
T Consensus 165 ~~~g~wikacptv~~~ 180 (448)
T KOG0314|consen 165 PTPGPWIKACPTVSGS 180 (448)
T ss_pred CCCCccceeccccCCc
Confidence 9999999999987654
No 174
>KOG2044|consensus
Probab=53.35 E-value=7 Score=41.01 Aligned_cols=22 Identities=36% Similarity=0.999 Sum_probs=19.2
Q ss_pred CccccccCCcCccccCCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRRS 239 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~~ 239 (312)
.+.|+.||+.||.+.||.....
T Consensus 260 ~~~C~~cgq~gh~~~dc~g~~~ 281 (931)
T KOG2044|consen 260 PRRCFLCGQTGHEAKDCEGKPR 281 (931)
T ss_pred cccchhhcccCCcHhhcCCcCC
Confidence 4569999999999999988755
No 175
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=49.38 E-value=6.5 Score=37.06 Aligned_cols=11 Identities=64% Similarity=1.244 Sum_probs=8.8
Q ss_pred ceeeccccccc
Q psy10125 301 PWVIGPCQIHE 311 (312)
Q Consensus 301 ~~~~~~~~~~~ 311 (312)
-.|||||.||.
T Consensus 55 lvViGPCSiHD 65 (351)
T COG0722 55 LVVIGPCSIHD 65 (351)
T ss_pred EEEEeCCccCC
Confidence 46889999885
No 176
>KOG3116|consensus
Probab=46.12 E-value=5.5 Score=33.27 Aligned_cols=22 Identities=27% Similarity=0.911 Sum_probs=19.0
Q ss_pred CccccccCCcCccccCCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRRS 239 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~~ 239 (312)
...|-+|-|-|||..+|.+.+.
T Consensus 27 ~~rCQKClq~GHWtYECk~kRk 48 (177)
T KOG3116|consen 27 SARCQKCLQAGHWTYECKNKRK 48 (177)
T ss_pred chhHHHHHhhccceeeecCcee
Confidence 4579999999999999988654
No 177
>KOG4483|consensus
Probab=45.24 E-value=66 Score=31.38 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEeeCCCcEEEEEeCCHHHHHHHHH
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPI-KNVWVARNPPGFGFVEFEDRRDAEDAVR 93 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I-~~v~i~~~~kG~afV~f~~~~~A~~Ai~ 93 (312)
.-+.|-|-++|.....+||..+|+.|+.- -.|.++- .-.+|-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee--cceeEEeecchHHHHHHhh
Confidence 34678899999999999999999999753 3344442 4589999999999999985
No 178
>KOG4676|consensus
Probab=43.63 E-value=9.5 Score=36.88 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=41.9
Q ss_pred hhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee---C---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeE
Q psy10125 31 MIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR---N---PPGFGFVEFEDRRDAEDAVRGFDGREINGRR 104 (312)
Q Consensus 31 ~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~---~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 104 (312)
-...+....++||++++...+.. .++|..+-.|..+.|+. + +--|||+.|.+..++..++. .+++.+....
T Consensus 45 d~~~pv~sRtcyVkf~d~~sv~v--aQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~-pdg~Lp~~~~ 121 (479)
T KOG4676|consen 45 DSKIPVISRTCYVKFLDSQSVTV--AQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLP-PDGVLPGDRP 121 (479)
T ss_pred CccCcceeeeEEEeccCCcceeH--HhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccC-CCCccCCCCc
Confidence 34456677899999998765432 23333333333333332 1 34568888888777776663 4665555444
Q ss_pred E
Q psy10125 105 V 105 (312)
Q Consensus 105 i 105 (312)
+
T Consensus 122 l 122 (479)
T KOG4676|consen 122 L 122 (479)
T ss_pred c
Confidence 4
No 179
>KOG2193|consensus
Probab=42.84 E-value=1.1 Score=43.46 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=62.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee-CC-CcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR-NP-PGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~-~~-kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
.+.++-|.|+|+...++.|..++.+||.+..+..+. ++ ....-|+|...+.+..||..+++..+....++|.|-..
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 356799999999999999999999999998876643 22 22334678888999999999999999999888887654
No 180
>KOG2673|consensus
Probab=42.34 E-value=13 Score=36.52 Aligned_cols=20 Identities=40% Similarity=0.904 Sum_probs=18.1
Q ss_pred ccccCCcCccccCCCCCCCC
Q psy10125 221 CYECGGRGHYARDCRSRRSG 240 (312)
Q Consensus 221 C~~Cg~~GH~ar~Cp~~~~~ 240 (312)
||||+..-|--+|||.+.+-
T Consensus 131 CFNC~g~~hsLrdC~rp~d~ 150 (485)
T KOG2673|consen 131 CFNCGGTPHSLRDCPRPFDF 150 (485)
T ss_pred ccccCCCCCccccCCCcccc
Confidence 99999999999999997654
No 181
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=39.34 E-value=14 Score=37.98 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=20.0
Q ss_pred CCccccccCCcCccc--cCCCCCCCCC
Q psy10125 217 PDDKCYECGGRGHYA--RDCRSRRSGG 241 (312)
Q Consensus 217 ~~~~C~~Cg~~GH~a--r~Cp~~~~~~ 241 (312)
..++|-+|||.|||. +.||.-.+..
T Consensus 936 Ttr~C~nCGQvGHmkTNK~CP~f~s~~ 962 (968)
T COG5179 936 TTRTCGNCGQVGHMKTNKACPKFSSKD 962 (968)
T ss_pred cceecccccccccccccccCccccCCC
Confidence 367899999999995 5899866553
No 182
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=37.28 E-value=17 Score=29.75 Aligned_cols=20 Identities=25% Similarity=0.657 Sum_probs=17.1
Q ss_pred CccccccCCcCccccCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRR 238 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~ 238 (312)
...|+.|+ -.||...||...
T Consensus 106 ~v~CR~Ck-GdH~T~~CPyKd 125 (128)
T PF12353_consen 106 KVKCRICK-GDHWTSKCPYKD 125 (128)
T ss_pred eEEeCCCC-CCcccccCCccc
Confidence 46799996 999999999754
No 183
>KOG2560|consensus
Probab=33.88 E-value=10 Score=37.28 Aligned_cols=21 Identities=33% Similarity=0.808 Sum_probs=17.9
Q ss_pred CccccccCCcCccccCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRR 238 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~ 238 (312)
.++|-|||..+|-.+||=.++
T Consensus 112 KGACeNCGAmtHk~KDCmERP 132 (529)
T KOG2560|consen 112 KGACENCGAMTHKVKDCMERP 132 (529)
T ss_pred hhhhhhhhhhhcchHHHhhcc
Confidence 467999999999999996543
No 184
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.60 E-value=54 Score=26.23 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCHHHHHHHhhcCCCeeEEEEeeC--CCcEEEEEeCCHHH-HHHHH
Q psy10125 50 STKEDIEDAFSYYGPIKNVWVARN--PPGFGFVEFEDRRD-AEDAV 92 (312)
Q Consensus 50 ~teedL~~~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~-A~~Ai 92 (312)
.+.++|.+.|+.|..++...+... ..|+++|.|...-. -..|+
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 355789999999988753333322 46899999985433 34444
No 185
>KOG4008|consensus
Probab=28.32 E-value=43 Score=30.33 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.3
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEE
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVW 69 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~ 69 (312)
+....+..||+-|+|...|++.|..++++.|-+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3445667899999999999999999999998654443
No 186
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.62 E-value=2e+02 Score=19.36 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=39.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCH----HHHHHHHHh
Q psy10125 40 YVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDR----RDAEDAVRG 94 (312)
Q Consensus 40 ~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~----~~A~~Ai~~ 94 (312)
+|.|.+|.-..-...|++.+.+.-.|..+.+... .+-..|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4677777777777889999999988888887654 56788888754 445555544
No 187
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.79 E-value=1.5e+02 Score=22.06 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=25.4
Q ss_pred CeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCce
Q psy10125 64 PIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGRE 99 (312)
Q Consensus 64 ~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~ 99 (312)
.|.++....+-+||-||+=.++.++..|+..+....
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 445555555579999999999999999998776644
No 188
>KOG3070|consensus
Probab=25.63 E-value=1e+02 Score=27.83 Aligned_cols=21 Identities=43% Similarity=1.061 Sum_probs=18.6
Q ss_pred CCccccccCCcCccccCCCCC
Q psy10125 217 PDDKCYECGGRGHYARDCRSR 237 (312)
Q Consensus 217 ~~~~C~~Cg~~GH~ar~Cp~~ 237 (312)
+...||.|+++||.+.+|.+.
T Consensus 198 ~~~~~~~~~~~g~~~~~~~e~ 218 (235)
T KOG3070|consen 198 PASLCYTCGEPGHVADGCEES 218 (235)
T ss_pred CcccccccCcccccccccccc
Confidence 356799999999999999985
No 189
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.24 E-value=2.5e+02 Score=23.70 Aligned_cols=53 Identities=23% Similarity=0.149 Sum_probs=38.1
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcC---CCeeEEEEeeC--------------CCc-EEEEEeCCHHH
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYY---GPIKNVWVARN--------------PPG-FGFVEFEDRRD 87 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~---G~I~~v~i~~~--------------~kG-~afV~f~~~~~ 87 (312)
+.++.+||+..++..+++++.++..++- ++++.|.+-+. .+. |-+|+|++-..
T Consensus 84 pkd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 84 PKDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred cCCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 4556899999999999999999988865 34555554321 133 88888887654
No 190
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.39 E-value=57 Score=24.38 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.2
Q ss_pred CChhHhhhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCC
Q psy10125 26 EDPVMMIARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGP 64 (312)
Q Consensus 26 ~~p~~~~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~ 64 (312)
.|+..+.....-...-||--|....++++|+..|...|.
T Consensus 36 dDde~aIfnI~gT~Sy~V~Fl~~~~s~eev~~ele~mga 74 (88)
T COG4009 36 DDDELAIFNIEGTSSYYVVFLEEVESEEEVERELEDMGA 74 (88)
T ss_pred CCCcEEEEEecCceeEEEEEEeccCCHHHHHHHHHHhCc
Confidence 445555555555666777788899999999999998874
No 191
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.02 E-value=1e+02 Score=21.87 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCCeeEEEEe
Q psy10125 53 EDIEDAFSYYGPIKNVWVA 71 (312)
Q Consensus 53 edL~~~F~~~G~I~~v~i~ 71 (312)
++|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999766654
No 192
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=21.09 E-value=34 Score=32.73 Aligned_cols=11 Identities=64% Similarity=1.244 Sum_probs=9.0
Q ss_pred ceeeccccccc
Q psy10125 301 PWVIGPCQIHE 311 (312)
Q Consensus 301 ~~~~~~~~~~~ 311 (312)
-.|+|||.||.
T Consensus 50 lvIvGPCSIhd 60 (344)
T TIGR00034 50 LVVIGPCSIHD 60 (344)
T ss_pred EEEecCCCCCC
Confidence 35889999996
No 193
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.85 E-value=35 Score=32.75 Aligned_cols=12 Identities=50% Similarity=1.118 Sum_probs=9.3
Q ss_pred ceeecccccccC
Q psy10125 301 PWVIGPCQIHEE 312 (312)
Q Consensus 301 ~~~~~~~~~~~~ 312 (312)
-.|+|||.||.+
T Consensus 55 lvIvGPCSIhd~ 66 (356)
T PRK12822 55 LVIIGPCSIHDP 66 (356)
T ss_pred EEEEcCCcCCCH
Confidence 458899999863
No 194
>KOG4019|consensus
Probab=20.79 E-value=81 Score=27.45 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=48.7
Q ss_pred ceEEEEcCCCCCCCH-----HHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCe-EEEEEecC
Q psy10125 38 VIYVSIVLCSTSSTK-----EDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGR-RVRVEMSN 111 (312)
Q Consensus 38 ~~~l~V~nLp~~~te-----edL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~-~i~V~~a~ 111 (312)
.+++.+..++..+-. ...+.+|.+|-+.....+.+ +.++.-|.|.++..|..|...++...+.+. .++.-+++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 355666666655322 22345566665544443332 345667889999999999999999999988 66666665
Q ss_pred C
Q psy10125 112 P 112 (312)
Q Consensus 112 ~ 112 (312)
+
T Consensus 89 ~ 89 (193)
T KOG4019|consen 89 P 89 (193)
T ss_pred C
Confidence 5
No 195
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=20.73 E-value=3.2e+02 Score=19.39 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=36.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCH
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDR 85 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~ 85 (312)
..+|.|.++.=.-=...++..+.....+..+.+... .+-++|.|.+.
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-~~~~~V~~d~~ 49 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-KGTATVTFDSN 49 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-cCeEEEEEcCC
Confidence 457788877766666789999999888888877654 56689999883
No 196
>KOG1295|consensus
Probab=20.30 E-value=1.4e+02 Score=28.82 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=44.1
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEe-------eCCCcEEEEEeCCHHHHHHHHHhCCCcee
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNV-WVA-------RNPPGFGFVEFEDRRDAEDAVRGFDGREI 100 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v-~i~-------~~~kG~afV~f~~~~~A~~Ai~~l~g~~i 100 (312)
...+|.|.+||+..|+++|.+.+..+-.-... .+. ....+.+||.|..+.+...-...++++.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34688999999999999988776654321111 111 11357889999999998777777777654
Done!