Query psy10125
Match_columns 312
No_of_seqs 351 out of 2205
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:31:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.7 2.1E-17 7E-22 128.5 10.0 78 35-112 16-98 (99)
2 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.6E-17 2.3E-21 135.2 11.3 82 35-116 36-122 (156)
3 1x4c_A Splicing factor, argini 99.7 2.6E-16 8.7E-21 123.8 13.5 79 36-116 13-96 (108)
4 1u6f_A Tcubp1, RNA-binding pro 99.7 1E-16 3.5E-21 131.3 11.2 85 34-118 38-127 (139)
5 4f25_A Polyadenylate-binding p 99.7 1.2E-16 4E-21 127.3 9.9 79 37-115 4-85 (115)
6 1whw_A Hypothetical protein ri 99.7 4.2E-16 1.4E-20 120.2 12.6 81 36-116 6-91 (99)
7 1x4a_A Splicing factor, argini 99.7 3.1E-16 1.1E-20 123.2 11.7 82 35-116 19-102 (109)
8 2dnz_A Probable RNA-binding pr 99.7 3.8E-16 1.3E-20 119.3 11.4 81 36-116 3-88 (95)
9 1sjq_A Polypyrimidine tract-bi 99.7 1.9E-16 6.6E-21 124.3 9.8 82 34-116 12-95 (105)
10 2lxi_A RNA-binding protein 10; 99.7 9.9E-17 3.4E-21 122.5 7.6 79 38-116 1-86 (91)
11 2dgt_A RNA-binding protein 30; 99.7 6.9E-16 2.3E-20 117.5 12.3 79 35-116 7-85 (92)
12 1x5t_A Splicing factor 3B subu 99.7 3.9E-16 1.3E-20 119.5 11.0 80 37-116 4-89 (96)
13 2dnq_A RNA-binding protein 4B; 99.7 5.9E-16 2E-20 117.4 11.4 78 36-116 6-83 (90)
14 3ex7_B RNA-binding protein 8A; 99.7 2.2E-16 7.6E-21 127.2 9.3 83 34-116 18-105 (126)
15 2cq3_A RNA-binding protein 9; 99.7 1.2E-15 4.1E-20 118.5 13.0 83 35-117 12-97 (103)
16 2cq0_A Eukaryotic translation 99.7 5.3E-16 1.8E-20 120.5 10.8 82 35-116 12-98 (103)
17 2dgu_A Heterogeneous nuclear r 99.7 9.1E-16 3.1E-20 119.4 12.1 77 37-116 10-86 (103)
18 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.1E-15 3.8E-20 118.7 12.5 81 36-116 13-96 (103)
19 3s8s_A Histone-lysine N-methyl 99.7 4.6E-16 1.6E-20 123.2 10.4 78 37-114 5-87 (110)
20 2fy1_A RNA-binding motif prote 99.7 1.3E-15 4.5E-20 121.4 12.8 81 36-116 5-89 (116)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5E-16 1.7E-20 120.4 9.9 81 36-116 10-95 (102)
22 2dnh_A Bruno-like 5, RNA bindi 99.6 4.1E-16 1.4E-20 121.5 9.2 83 34-116 11-100 (105)
23 3md1_A Nuclear and cytoplasmic 99.6 8.9E-16 3E-20 114.2 10.5 77 38-114 1-82 (83)
24 2cqd_A RNA-binding region cont 99.6 2.4E-15 8.2E-20 119.4 13.5 80 35-115 14-98 (116)
25 2dgs_A DAZ-associated protein 99.6 1.1E-15 3.8E-20 117.8 11.2 80 36-116 8-92 (99)
26 1x5u_A Splicing factor 3B subu 99.6 8.7E-16 3E-20 119.6 10.7 82 35-116 12-98 (105)
27 3bs9_A Nucleolysin TIA-1 isofo 99.6 9.2E-16 3.1E-20 115.2 10.4 78 37-114 5-87 (87)
28 1x4g_A Nucleolysin TIAR; struc 99.6 1.6E-15 5.5E-20 119.2 12.2 84 32-116 19-102 (109)
29 1why_A Hypothetical protein ri 99.6 6.2E-16 2.1E-20 118.9 9.3 80 35-115 14-95 (97)
30 2dgx_A KIAA0430 protein; RRM d 99.6 1.5E-15 5.2E-20 116.8 11.5 80 36-115 7-92 (96)
31 2jvr_A Nucleolar protein 3; RN 99.6 7.3E-16 2.5E-20 122.3 9.9 81 35-115 25-107 (111)
32 3r27_A HnRNP L, heterogeneous 99.6 9.4E-16 3.2E-20 119.3 10.2 78 36-114 19-98 (100)
33 1x5s_A Cold-inducible RNA-bind 99.6 6.5E-16 2.2E-20 119.7 9.3 81 36-116 10-95 (102)
34 2cpf_A RNA binding motif prote 99.6 1.6E-15 5.4E-20 116.7 11.4 80 37-116 4-91 (98)
35 2wbr_A GW182, gawky, LD47780P; 99.6 8.2E-16 2.8E-20 116.4 9.5 75 36-111 5-79 (89)
36 2dnm_A SRP46 splicing factor; 99.6 7.2E-16 2.5E-20 119.8 9.5 81 36-116 11-96 (103)
37 4a8x_A RNA-binding protein wit 99.6 1.1E-15 3.9E-20 114.8 10.3 78 37-114 3-86 (88)
38 1x4d_A Matrin 3; structural ge 99.6 4.5E-16 1.6E-20 121.7 8.3 79 36-115 13-94 (102)
39 2dnp_A RNA-binding protein 14; 99.6 1.2E-15 4.1E-20 115.7 10.4 79 35-116 6-84 (90)
40 2cpd_A Apobec-1 stimulating pr 99.6 2.6E-15 9E-20 115.8 12.4 78 36-116 13-92 (99)
41 2cph_A RNA binding motif prote 99.6 9E-16 3.1E-20 119.8 9.8 82 35-116 12-100 (107)
42 2d9p_A Polyadenylate-binding p 99.6 7.3E-16 2.5E-20 119.7 9.1 82 35-116 12-96 (103)
43 2cpz_A CUG triplet repeat RNA- 99.6 8.6E-16 3E-20 121.8 9.7 81 36-116 23-108 (115)
44 2do4_A Squamous cell carcinoma 99.6 9.7E-16 3.3E-20 118.4 9.6 81 35-115 14-98 (100)
45 2hvz_A Splicing factor, argini 99.6 6E-16 2E-20 119.8 8.4 78 39-116 1-78 (101)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.2E-15 4.1E-20 114.0 9.7 76 36-111 5-85 (85)
47 2lkz_A RNA-binding protein 5; 99.6 5.5E-16 1.9E-20 119.6 7.8 77 36-112 7-94 (95)
48 2cq1_A PTB-like protein L; RRM 99.6 2.7E-15 9.1E-20 117.1 11.7 80 36-116 13-94 (101)
49 2cpi_A CCR4-NOT transcription 99.6 9.5E-16 3.3E-20 121.1 9.2 84 33-116 10-104 (111)
50 2kvi_A Nuclear polyadenylated 99.6 7.2E-16 2.5E-20 118.5 8.0 79 35-116 7-86 (96)
51 2dgo_A Cytotoxic granule-assoc 99.6 5.1E-15 1.7E-19 117.2 13.2 82 35-116 12-98 (115)
52 2cpe_A RNA-binding protein EWS 99.6 1.2E-15 4.2E-20 120.4 9.4 83 34-116 11-106 (113)
53 1x4h_A RNA-binding protein 28; 99.6 2.4E-15 8.2E-20 118.2 10.9 82 35-116 12-104 (111)
54 3pgw_S U1-70K; protein-RNA com 99.6 3.9E-15 1.3E-19 144.7 14.7 83 36-118 100-187 (437)
55 1x4b_A Heterogeneous nuclear r 99.6 1.5E-15 5E-20 120.6 9.6 78 38-116 27-109 (116)
56 2dng_A Eukaryotic translation 99.6 3.3E-15 1.1E-19 116.1 11.5 79 36-116 13-96 (103)
57 1wf1_A RNA-binding protein RAL 99.6 1.6E-15 5.5E-20 119.4 9.6 77 36-115 25-102 (110)
58 1wi8_A EIF-4B, eukaryotic tran 99.6 3.6E-15 1.2E-19 116.1 11.5 79 36-116 13-97 (104)
59 2xnq_A Nuclear polyadenylated 99.6 3.4E-15 1.2E-19 115.2 11.0 79 33-114 17-96 (97)
60 2e5h_A Zinc finger CCHC-type a 99.6 2.8E-15 9.6E-20 114.3 10.4 77 35-111 13-94 (94)
61 2x1f_A MRNA 3'-END-processing 99.6 3.2E-15 1.1E-19 114.7 10.7 78 38-115 2-84 (96)
62 2cpj_A Non-POU domain-containi 99.6 2.3E-15 8E-20 116.1 9.9 81 35-116 12-92 (99)
63 2dgp_A Bruno-like 4, RNA bindi 99.6 2.4E-15 8.1E-20 117.3 9.8 81 36-116 11-99 (106)
64 2ad9_A Polypyrimidine tract-bi 99.6 2.2E-15 7.5E-20 121.0 9.6 80 36-116 29-110 (119)
65 2jvo_A Nucleolar protein 3; nu 99.6 3.1E-15 1.1E-19 117.8 10.3 80 33-115 26-105 (108)
66 2cqh_A IGF-II mRNA-binding pro 99.6 2.3E-15 7.7E-20 114.8 9.2 79 36-116 6-86 (93)
67 2dhg_A TRNA selenocysteine ass 99.6 2.1E-15 7.1E-20 117.3 9.1 81 36-116 7-93 (104)
68 2cqc_A Arginine/serine-rich sp 99.6 3.1E-15 1.1E-19 114.1 9.8 78 35-112 12-94 (95)
69 3beg_B Splicing factor, argini 99.6 1.3E-15 4.4E-20 121.3 7.9 77 37-115 15-96 (115)
70 2la4_A Nuclear and cytoplasmic 99.6 3.1E-15 1.1E-19 115.7 9.7 78 35-113 24-101 (101)
71 1oo0_B CG8781-PA, drosophila Y 99.6 3.3E-15 1.1E-19 117.4 9.9 82 34-115 22-108 (110)
72 1wex_A Hypothetical protein (r 99.6 3.8E-15 1.3E-19 116.8 10.0 79 37-116 14-94 (104)
73 1p27_B RNA-binding protein 8A; 99.6 2.4E-15 8.1E-20 117.3 8.8 81 35-115 20-105 (106)
74 3ucg_A Polyadenylate-binding p 99.6 5.6E-15 1.9E-19 111.3 10.5 76 38-114 6-86 (89)
75 2dgv_A HnRNP M, heterogeneous 99.6 3.1E-15 1E-19 113.6 9.1 80 36-115 6-88 (92)
76 2err_A Ataxin-2-binding protei 99.6 3.1E-15 1E-19 117.9 9.2 81 34-114 25-108 (109)
77 2fc9_A NCL protein; structure 99.6 6.8E-15 2.3E-19 113.8 11.0 79 35-116 12-94 (101)
78 2dh8_A DAZ-associated protein 99.6 3.4E-15 1.2E-19 116.3 9.2 81 35-116 13-98 (105)
79 3p5t_L Cleavage and polyadenyl 99.6 6.3E-16 2.2E-20 117.4 4.9 77 39-115 2-85 (90)
80 2ytc_A PRE-mRNA-splicing facto 99.6 4.7E-15 1.6E-19 110.9 9.6 75 36-111 10-85 (85)
81 2ywk_A Putative RNA-binding pr 99.6 5.4E-15 1.8E-19 112.9 10.1 77 36-112 14-94 (95)
82 2div_A TRNA selenocysteine ass 99.6 4E-15 1.4E-19 114.6 9.3 80 36-115 7-96 (99)
83 2do0_A HnRNP M, heterogeneous 99.6 1.2E-14 4.2E-19 114.7 12.2 81 36-116 13-97 (114)
84 3d2w_A TAR DNA-binding protein 99.6 6.1E-15 2.1E-19 112.1 9.4 79 35-115 8-86 (89)
85 3ulh_A THO complex subunit 4; 99.6 8.2E-15 2.8E-19 114.4 10.4 77 35-111 26-106 (107)
86 2dgw_A Probable RNA-binding pr 99.6 1.1E-14 3.8E-19 110.4 10.7 78 36-115 8-89 (91)
87 2e5j_A Methenyltetrahydrofolat 99.6 5.2E-15 1.8E-19 113.8 8.9 80 35-115 16-96 (97)
88 2khc_A Testis-specific RNP-typ 99.6 6E-15 2.1E-19 117.3 9.4 77 35-111 37-118 (118)
89 1x4f_A Matrin 3; structural ge 99.6 2E-15 6.9E-20 119.9 6.5 81 35-116 22-105 (112)
90 2jwn_A Embryonic polyadenylate 99.6 6.8E-15 2.3E-19 118.0 9.7 79 36-115 34-117 (124)
91 2kxn_B Transformer-2 protein h 99.6 3.8E-15 1.3E-19 121.1 8.1 82 34-115 42-128 (129)
92 1wf0_A TDP-43, TAR DNA-binding 99.6 5.8E-15 2E-19 111.4 8.6 78 37-116 4-81 (88)
93 2i2y_A Fusion protein consists 99.6 4.3E-15 1.5E-19 123.3 8.5 80 35-114 70-149 (150)
94 2la6_A RNA-binding protein FUS 99.6 5.1E-15 1.8E-19 114.2 8.3 78 34-111 9-99 (99)
95 1x5p_A Negative elongation fac 99.6 3.2E-14 1.1E-18 109.3 12.7 79 35-116 12-90 (97)
96 2rs2_A Musashi-1, RNA-binding 99.6 1.6E-14 5.5E-19 113.8 11.1 81 34-115 21-106 (109)
97 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-14 5.1E-19 117.8 11.0 83 33-115 23-108 (130)
98 2jrs_A RNA-binding protein 39; 99.6 6.1E-15 2.1E-19 116.1 8.5 79 36-114 24-107 (108)
99 1s79_A Lupus LA protein; RRM, 99.6 6.8E-15 2.3E-19 115.1 8.7 75 37-112 10-88 (103)
100 2cpx_A Hypothetical protein FL 99.6 9E-15 3.1E-19 115.7 9.3 81 36-116 23-108 (115)
101 2cqp_A RNA-binding protein 12; 99.6 5.6E-15 1.9E-19 113.6 7.5 79 36-114 13-96 (98)
102 2fc8_A NCL protein; structure 99.6 7.8E-15 2.7E-19 113.6 8.4 80 34-116 11-95 (102)
103 2cq4_A RNA binding motif prote 99.6 3.6E-15 1.2E-19 118.0 6.5 78 37-115 24-106 (114)
104 2dis_A Unnamed protein product 99.6 1.1E-14 3.8E-19 114.1 9.2 81 35-115 5-94 (109)
105 2cqg_A TDP-43, TAR DNA-binding 99.6 3E-14 1E-18 110.5 11.5 79 36-116 13-96 (103)
106 3ns6_A Eukaryotic translation 99.6 2.3E-15 7.7E-20 116.8 5.0 78 37-114 5-94 (100)
107 1wez_A HnRNP H', FTP-3, hetero 99.6 7.2E-15 2.5E-19 114.6 7.9 79 34-114 11-93 (102)
108 1whx_A Hypothetical protein ri 99.6 8.1E-15 2.8E-19 115.9 8.3 77 37-114 9-85 (111)
109 2lcw_A RNA-binding protein FUS 99.3 3E-16 1E-20 124.7 0.0 81 36-116 5-98 (116)
110 3n9u_C Cleavage and polyadenyl 99.6 1.2E-14 4E-19 122.1 9.6 77 37-113 54-137 (156)
111 1p1t_A Cleavage stimulation fa 99.6 7.2E-15 2.5E-19 114.1 7.7 78 38-115 8-90 (104)
112 2kt5_A RNA and export factor-b 99.6 2.6E-14 8.8E-19 114.8 11.1 82 34-115 31-116 (124)
113 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.6E-15 1.6E-19 114.9 6.4 79 34-114 15-99 (100)
114 1nu4_A U1A RNA binding domain; 99.5 1.2E-14 4.2E-19 111.3 8.7 80 36-115 6-91 (97)
115 2e5g_A U6 snRNA-specific termi 99.5 3.7E-14 1.3E-18 108.3 11.3 79 37-116 7-85 (94)
116 3s7r_A Heterogeneous nuclear r 99.5 2.8E-14 9.5E-19 107.2 10.3 75 35-110 8-87 (87)
117 3lqv_A PRE-mRNA branch site pr 99.5 1.4E-14 4.9E-19 114.6 9.0 79 36-114 6-86 (115)
118 2kn4_A Immunoglobulin G-bindin 99.5 2.6E-14 9E-19 119.3 11.0 81 36-116 68-153 (158)
119 3q2s_C Cleavage and polyadenyl 99.5 5.2E-15 1.8E-19 131.9 7.1 76 37-112 67-149 (229)
120 2ek1_A RNA-binding protein 12; 99.5 5.6E-15 1.9E-19 112.8 6.3 76 37-112 14-94 (95)
121 2a3j_A U1 small nuclear ribonu 99.5 1.7E-14 5.7E-19 117.2 9.3 80 36-115 27-112 (127)
122 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3.2E-14 1.1E-18 116.0 10.9 77 34-110 59-140 (140)
123 2nlw_A Eukaryotic translation 99.5 1.9E-14 6.4E-19 112.5 8.8 79 37-115 14-102 (105)
124 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2E-14 6.9E-19 121.3 9.7 81 36-116 70-155 (165)
125 2mss_A Protein (musashi1); RNA 99.5 9E-15 3.1E-19 106.8 6.5 70 40-110 1-75 (75)
126 1fjc_A Nucleolin RBD2, protein 99.5 1.4E-14 4.6E-19 111.0 7.8 80 36-115 14-93 (96)
127 2cq2_A Hypothetical protein LO 99.5 2.5E-14 8.4E-19 113.9 9.4 78 38-116 25-109 (114)
128 1wg1_A KIAA1579 protein, homol 99.5 1.8E-14 6.2E-19 108.8 8.2 76 37-114 4-79 (88)
129 1x4e_A RNA binding motif, sing 99.5 5.4E-15 1.9E-19 110.6 5.0 74 37-110 4-82 (85)
130 2krb_A Eukaryotic translation 99.5 1.1E-14 3.8E-19 108.2 6.3 69 39-107 2-80 (81)
131 2lea_A Serine/arginine-rich sp 99.5 1E-14 3.6E-19 119.4 6.6 81 36-116 45-130 (135)
132 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1E-14 3.4E-19 106.9 5.9 71 39-110 1-76 (77)
133 2e5i_A Heterogeneous nuclear r 99.5 5.2E-14 1.8E-18 113.7 10.5 79 36-115 23-104 (124)
134 1sjr_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 119.2 10.4 81 35-115 43-126 (164)
135 1wg5_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 109.7 10.0 79 36-115 13-96 (104)
136 3tyt_A Heterogeneous nuclear r 99.5 4.7E-14 1.6E-18 123.5 10.6 78 37-114 3-81 (205)
137 2ki2_A SS-DNA binding protein 99.5 6.6E-15 2.3E-19 111.4 4.4 76 39-115 2-82 (90)
138 2cpy_A RNA-binding protein 12; 99.5 3.8E-14 1.3E-18 112.4 8.9 79 35-114 12-95 (114)
139 2db1_A Heterogeneous nuclear r 99.5 2.8E-14 9.5E-19 114.1 8.0 78 35-113 14-98 (118)
140 2m2b_A RNA-binding protein 10; 99.5 9.9E-15 3.4E-19 118.6 5.2 80 36-116 21-111 (131)
141 2hgn_A Heterogeneous nuclear r 99.5 6.9E-15 2.4E-19 121.3 4.1 80 34-115 42-125 (139)
142 1fj7_A Nucleolin RBD1, protein 99.5 9.8E-15 3.3E-19 112.9 4.7 78 36-115 15-97 (101)
143 2hzc_A Splicing factor U2AF 65 99.5 9.4E-14 3.2E-18 104.1 9.3 71 37-109 5-86 (87)
144 1x5o_A RNA binding motif, sing 99.5 5.6E-14 1.9E-18 111.0 8.4 78 36-113 23-112 (114)
145 2hgl_A HNRPF protein, heteroge 99.5 3.8E-14 1.3E-18 116.4 7.4 78 35-113 41-125 (136)
146 2dnn_A RNA-binding protein 12; 99.5 1.5E-13 5E-18 108.6 10.3 74 38-113 16-93 (109)
147 2e44_A Insulin-like growth fac 99.5 6.2E-14 2.1E-18 107.2 7.7 79 36-114 13-93 (96)
148 2bz2_A Negative elongation fac 99.5 1.2E-13 4E-18 111.1 8.8 81 33-116 34-114 (121)
149 3egn_A RNA-binding protein 40; 99.5 9.3E-14 3.2E-18 114.3 8.2 80 36-115 43-132 (143)
150 1iqt_A AUF1, heterogeneous nuc 99.5 3.2E-14 1.1E-18 103.7 4.8 70 40-110 1-75 (75)
151 2f3j_A RNA and export factor b 99.5 1.6E-13 5.4E-18 117.5 9.5 79 36-114 86-168 (177)
152 1wel_A RNA-binding protein 12; 99.4 3.5E-14 1.2E-18 114.2 4.2 77 36-113 23-104 (124)
153 2diu_A KIAA0430 protein; struc 99.4 2.3E-13 7.9E-18 104.0 8.4 73 38-115 9-86 (96)
154 2lmi_A GRSF-1, G-rich sequence 99.4 6.2E-14 2.1E-18 109.9 5.2 77 36-113 9-92 (107)
155 2lli_A Protein AIR2; RNA surve 99.4 3.9E-13 1.3E-17 108.6 9.9 77 145-238 6-84 (124)
156 4f02_A Polyadenylate-binding p 99.4 2.2E-13 7.6E-18 119.3 8.9 77 38-114 103-182 (213)
157 4f02_A Polyadenylate-binding p 99.4 4.5E-13 1.5E-17 117.3 10.2 78 37-114 14-96 (213)
158 1fxl_A Paraneoplastic encephal 99.4 5.7E-13 2E-17 110.6 10.3 77 38-114 2-83 (167)
159 2xs2_A Deleted in azoospermia- 99.4 1.9E-13 6.5E-18 105.8 6.8 76 37-114 8-87 (102)
160 1b7f_A Protein (SXL-lethal pro 99.4 6.5E-13 2.2E-17 110.7 10.0 77 38-114 3-84 (168)
161 2dha_A FLJ20171 protein; RRM d 99.4 2E-13 6.7E-18 110.2 6.3 76 36-112 21-104 (123)
162 3md3_A Nuclear and cytoplasmic 99.4 8.7E-13 3E-17 109.4 10.5 78 35-112 84-166 (166)
163 2hgm_A HNRPF protein, heteroge 99.4 3.9E-13 1.3E-17 108.9 7.6 77 34-112 38-120 (126)
164 2yh0_A Splicing factor U2AF 65 99.4 9.1E-13 3.1E-17 112.8 10.4 80 36-115 112-196 (198)
165 3nyb_B Protein AIR2; polya RNA 99.4 1.4E-13 4.7E-18 103.1 4.4 64 143-240 5-68 (83)
166 2qfj_A FBP-interacting repress 99.4 9.8E-13 3.3E-17 114.2 10.4 81 36-116 123-208 (216)
167 1l3k_A Heterogeneous nuclear r 99.4 1.1E-12 3.6E-17 112.2 10.4 79 37-116 103-186 (196)
168 2j8a_A Histone-lysine N-methyl 99.4 6E-13 2.1E-17 107.4 8.1 75 38-112 2-95 (136)
169 3md3_A Nuclear and cytoplasmic 99.4 9.5E-13 3.2E-17 109.1 9.3 76 39-114 1-80 (166)
170 2adc_A Polypyrimidine tract-bi 99.4 9E-13 3.1E-17 116.7 9.1 80 35-114 31-111 (229)
171 2cjk_A Nuclear polyadenylated 99.4 7.5E-13 2.6E-17 110.3 8.0 75 38-113 87-166 (167)
172 1l3k_A Heterogeneous nuclear r 99.4 1.9E-12 6.6E-17 110.6 10.2 80 35-115 10-94 (196)
173 2g4b_A Splicing factor U2AF 65 99.4 1.2E-12 4.3E-17 109.5 8.9 73 38-110 94-171 (172)
174 1qm9_A Polypyrimidine tract-bi 99.4 6.8E-13 2.3E-17 114.2 7.3 78 37-114 2-80 (198)
175 3pgw_A U1-A; protein-RNA compl 99.4 2E-12 6.7E-17 117.4 10.6 76 36-111 205-281 (282)
176 3u1l_A PRE-mRNA-splicing facto 99.4 6E-13 2.1E-17 119.1 7.0 80 35-115 131-231 (240)
177 1fje_B Nucleolin RBD12, protei 99.4 1.4E-12 4.7E-17 109.8 8.7 78 37-114 98-175 (175)
178 2dnl_A Cytoplasmic polyadenyla 99.4 1.8E-12 6.2E-17 102.6 8.7 74 36-112 6-87 (114)
179 2dit_A HIV TAT specific factor 99.4 6.7E-12 2.3E-16 99.0 11.6 84 33-116 10-105 (112)
180 2qfj_A FBP-interacting repress 99.3 1.6E-12 5.6E-17 112.8 8.5 81 34-114 24-109 (216)
181 3pgw_A U1-A; protein-RNA compl 99.3 3.6E-12 1.2E-16 115.7 10.3 79 36-114 7-91 (282)
182 1qm9_A Polypyrimidine tract-bi 99.3 2.2E-12 7.6E-17 110.9 7.9 77 37-113 119-197 (198)
183 2pe8_A Splicing factor 45; RRM 99.3 1E-11 3.5E-16 97.3 10.7 77 36-112 6-93 (105)
184 2adc_A Polypyrimidine tract-bi 99.3 4E-12 1.4E-16 112.5 9.4 77 37-113 150-228 (229)
185 2li8_A Protein LIN-28 homolog 99.3 1.4E-12 4.6E-17 95.6 5.0 62 152-239 2-67 (74)
186 2voo_A Lupus LA protein; RNA-b 99.3 6.3E-12 2.2E-16 108.9 9.9 74 38-112 109-186 (193)
187 3nmr_A Cugbp ELAV-like family 99.3 4.2E-12 1.4E-16 106.3 8.4 76 36-111 93-175 (175)
188 1b7f_A Protein (SXL-lethal pro 99.3 5.6E-12 1.9E-16 104.9 9.0 75 36-110 87-168 (168)
189 3sde_A Paraspeckle component 1 99.3 6.8E-12 2.3E-16 113.2 10.1 78 34-112 18-95 (261)
190 2g4b_A Splicing factor U2AF 65 99.3 1.2E-11 4E-16 103.5 10.3 75 37-113 3-88 (172)
191 2cjk_A Nuclear polyadenylated 99.3 7.6E-12 2.6E-16 104.1 8.9 75 37-113 2-81 (167)
192 1fxl_A Paraneoplastic encephal 99.3 8.1E-12 2.8E-16 103.6 8.8 74 37-110 87-167 (167)
193 3nmr_A Cugbp ELAV-like family 99.3 6.2E-12 2.1E-16 105.2 8.1 78 37-114 2-89 (175)
194 2yh0_A Splicing factor U2AF 65 99.3 2E-11 6.7E-16 104.4 10.2 76 37-114 3-89 (198)
195 2ghp_A U4/U6 snRNA-associated 99.2 2E-11 6.7E-16 111.3 10.0 78 36-114 208-292 (292)
196 3smz_A Protein raver-1, ribonu 99.2 2.3E-11 7.7E-16 110.5 9.8 82 34-115 180-266 (284)
197 2d9o_A DNAJ (HSP40) homolog, s 99.2 4.4E-11 1.5E-15 92.9 9.9 67 48-116 27-93 (100)
198 1fje_B Nucleolin RBD12, protei 99.2 8.6E-12 2.9E-16 104.9 5.6 80 34-114 9-92 (175)
199 3ts2_A Protein LIN-28 homolog 99.2 7.9E-13 2.7E-17 109.9 -1.0 22 219-240 120-141 (148)
200 3smz_A Protein raver-1, ribonu 99.2 4.7E-11 1.6E-15 108.4 10.6 76 35-112 19-94 (284)
201 2ghp_A U4/U6 snRNA-associated 99.2 4.7E-11 1.6E-15 108.8 10.3 79 33-112 36-117 (292)
202 3tyt_A Heterogeneous nuclear r 99.2 3E-11 1E-15 105.5 7.2 73 37-109 122-203 (205)
203 3v4m_A Splicing factor U2AF 65 99.1 1.2E-10 4E-15 91.2 8.4 76 37-112 4-96 (105)
204 3tht_A Alkylated DNA repair pr 99.1 1E-10 3.5E-15 109.9 9.5 76 35-111 15-97 (345)
205 1jmt_A Splicing factor U2AF 35 99.1 2E-11 6.8E-16 95.4 3.5 68 43-110 20-103 (104)
206 3ue2_A Poly(U)-binding-splicin 99.1 2.7E-10 9.1E-15 91.1 8.0 76 37-112 19-108 (118)
207 3sde_A Paraspeckle component 1 99.1 2.6E-10 9E-15 102.7 8.1 80 36-115 94-181 (261)
208 2a51_A Nucleocapsid protein; s 99.1 8.6E-11 3E-15 75.3 3.4 18 219-236 22-39 (39)
209 2ihx_A Nucleocapsid (NC) prote 99.1 1.4E-10 4.7E-15 81.9 4.7 26 218-243 30-55 (61)
210 2cqf_A RNA-binding protein LIN 99.0 3E-10 1E-14 80.6 6.2 23 219-241 30-52 (63)
211 3s6e_A RNA-binding protein 39; 99.0 8.7E-10 3E-14 87.5 9.5 77 36-112 5-92 (114)
212 2ec7_A GAG polyprotein (PR55GA 99.0 2.4E-10 8.1E-15 77.0 4.5 20 219-238 28-47 (49)
213 1cl4_A Protein (GAG polyprotei 99.0 2.6E-10 9E-15 80.1 3.4 24 218-241 30-53 (60)
214 2bl6_A Nucleocapsid protein P1 99.0 2.8E-10 9.6E-15 72.0 3.0 18 219-236 20-37 (37)
215 1a1t_A Nucleocapsid protein; s 98.9 6.2E-10 2.1E-14 76.8 3.8 20 219-238 34-53 (55)
216 1owx_A Lupus LA protein, SS-B, 98.9 7.4E-09 2.5E-13 82.8 8.9 76 36-112 16-95 (121)
217 2dnr_A Synaptojanin-1; RRM dom 98.9 7.8E-09 2.7E-13 78.2 8.5 75 37-115 6-88 (91)
218 2lli_A Protein AIR2; RNA surve 98.7 2E-08 6.7E-13 80.8 5.7 58 171-238 5-62 (124)
219 1ufw_A Synaptojanin 2; RNP dom 98.6 8.9E-08 3E-12 72.8 7.1 73 36-112 13-94 (95)
220 1a6b_B Momulv, zinc finger pro 98.6 4.7E-08 1.6E-12 62.5 4.5 26 217-242 9-34 (40)
221 2ihx_A Nucleocapsid (NC) prote 98.6 5.6E-08 1.9E-12 68.3 4.9 47 144-191 5-51 (61)
222 2a51_A Nucleocapsid protein; s 98.5 6.3E-08 2.2E-12 61.8 3.8 38 145-188 2-39 (39)
223 1dsq_A Nucleic acid binding pr 98.5 4E-08 1.4E-12 57.0 2.0 21 219-239 3-23 (26)
224 2bl6_A Nucleocapsid protein P1 98.5 1.1E-07 3.6E-12 60.0 3.6 36 145-188 2-37 (37)
225 1cl4_A Protein (GAG polyprotei 98.4 7.3E-08 2.5E-12 67.5 2.6 46 145-190 3-50 (60)
226 1u6p_A GAG polyprotein; MLV, A 98.4 1.7E-07 6E-12 64.3 4.1 29 217-245 22-50 (56)
227 2ec7_A GAG polyprotein (PR55GA 98.4 2.5E-07 8.5E-12 62.0 4.7 40 144-189 7-46 (49)
228 2li8_A Protein LIN-28 homolog 98.4 3.5E-07 1.2E-11 66.7 5.6 43 143-190 24-66 (74)
229 1a1t_A Nucleocapsid protein; s 98.3 3.6E-07 1.2E-11 62.7 4.1 40 144-189 13-52 (55)
230 1nc8_A Nucleocapsid protein; H 98.3 3.7E-07 1.3E-11 54.3 2.6 22 218-239 6-27 (29)
231 3dxb_A Thioredoxin N-terminall 98.3 1.1E-06 3.7E-11 76.9 6.3 63 50-112 141-212 (222)
232 2l9w_A U4/U6 snRNA-associated- 98.1 2E-05 6.7E-10 61.3 8.7 71 38-109 21-96 (117)
233 3nyb_B Protein AIR2; polya RNA 97.9 7.8E-06 2.7E-10 60.8 4.2 38 171-237 6-43 (83)
234 2ysa_A Retinoblastoma-binding 97.9 4.1E-06 1.4E-10 57.2 2.1 22 218-239 7-28 (55)
235 1a6b_B Momulv, zinc finger pro 97.4 0.00022 7.5E-09 45.3 4.4 25 141-165 8-32 (40)
236 2cqf_A RNA-binding protein LIN 97.3 0.00015 5.1E-09 50.9 3.0 21 218-238 7-27 (63)
237 1dsq_A Nucleic acid binding pr 97.1 0.00024 8.2E-09 40.8 2.2 20 144-163 3-22 (26)
238 1u6p_A GAG polyprotein; MLV, A 97.1 0.00071 2.4E-08 46.2 4.6 27 139-165 19-45 (56)
239 1wey_A Calcipressin 1; structu 97.0 0.0021 7.2E-08 49.5 7.6 76 38-114 5-85 (104)
240 2dhx_A Poly (ADP-ribose) polym 97.0 0.0071 2.4E-07 46.4 10.3 73 38-114 8-85 (104)
241 3ts2_A Protein LIN-28 homolog 96.7 0.00089 3E-08 55.1 3.1 22 218-239 97-118 (148)
242 1uw4_A UPF3X; nonsense mediate 96.6 0.013 4.5E-07 44.0 9.2 74 39-112 2-87 (91)
243 1whv_A Poly(A)-specific ribonu 96.6 0.0064 2.2E-07 46.1 7.2 56 36-95 14-69 (100)
244 1nc8_A Nucleocapsid protein; H 96.3 0.0024 8.3E-08 37.5 2.5 20 144-163 7-26 (29)
245 3ctr_A Poly(A)-specific ribonu 96.1 0.0092 3.2E-07 45.4 5.3 54 39-96 7-60 (101)
246 2ysa_A Retinoblastoma-binding 96.0 0.0042 1.4E-07 42.2 2.7 20 144-163 8-27 (55)
247 1wwh_A Nucleoporin 35, nucleop 95.8 0.045 1.5E-06 43.1 8.6 70 37-109 23-93 (119)
248 2l08_A Regulator of nonsense t 95.0 0.061 2.1E-06 40.7 6.5 74 38-111 9-94 (97)
249 3pq1_A Poly(A) RNA polymerase; 94.2 0.023 7.8E-07 55.0 3.2 55 38-93 53-107 (464)
250 3p3d_A Nucleoporin 53; structu 93.7 0.068 2.3E-06 42.7 4.5 71 39-111 8-97 (132)
251 2kn4_A Immunoglobulin G-bindin 87.8 0.28 9.7E-06 39.4 2.8 25 74-98 12-36 (158)
252 2i2y_A Fusion protein consists 87.3 0.17 5.8E-06 40.6 1.1 39 74-113 12-51 (150)
253 3d45_A Poly(A)-specific ribonu 78.3 4.8 0.00017 39.1 7.5 55 38-96 440-494 (507)
254 2g0c_A ATP-dependent RNA helic 66.2 12 0.00041 26.0 5.4 68 40-111 2-75 (76)
255 2hqh_E Restin; beta/BETA struc 58.6 3.7 0.00013 23.0 1.1 19 220-238 5-23 (26)
256 4f25_A Polyadenylate-binding p 53.1 3 0.0001 31.5 0.2 22 33-54 92-113 (115)
257 4eyt_A Telomerase associated p 51.4 70 0.0024 23.5 7.6 57 36-95 10-66 (129)
258 2pzo_E CAP-Gly domain-containi 38.1 12 0.00039 23.4 1.1 19 220-238 22-40 (42)
259 2db3_A ATP-dependent RNA helic 33.1 15 0.0005 34.4 1.5 21 255-278 28-48 (434)
260 3fry_A Probable copper-exporti 31.4 1E+02 0.0034 20.3 5.4 56 38-95 6-61 (73)
261 3lpe_A Putative transcription 21.4 2.3E+02 0.0079 20.3 6.7 47 51-97 21-72 (92)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=128.45 Aligned_cols=78 Identities=22% Similarity=0.504 Sum_probs=72.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
..+.++|||+|||+++|+++|+++|++||.|..+.|+++ ++|||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 344679999999999999999999999999999999865 478999999999999999999999999999999999
Q ss_pred cCC
Q psy10125 110 SNP 112 (312)
Q Consensus 110 a~~ 112 (312)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 2
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=6.6e-17 Score=135.22 Aligned_cols=82 Identities=29% Similarity=0.372 Sum_probs=75.2
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+ +++||||+|.+.++|++||..|++..|.++.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999865 468999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy10125 110 SNPQKMR 116 (312)
Q Consensus 110 a~~~~~~ 116 (312)
+++....
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9886654
No 3
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-16 Score=123.76 Aligned_cols=79 Identities=25% Similarity=0.311 Sum_probs=73.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCC-----eEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREING-----RRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g-----~~i~V~~a 110 (312)
....+|||+|||+++|+++|+++|++||.|..+.|+.+ |||||+|.+.++|++||+.||+..|.+ +.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 44689999999999999999999999999999999876 999999999999999999999999999 99999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
.++...
T Consensus 91 ~~~~~~ 96 (108)
T 1x4c_A 91 GPRSPS 96 (108)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 986654
No 4
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=131.33 Aligned_cols=85 Identities=24% Similarity=0.478 Sum_probs=76.9
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
.....++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.++.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4455689999999999999999999999999999999864 37999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q psy10125 109 MSNPQKMRGR 118 (312)
Q Consensus 109 ~a~~~~~~~~ 118 (312)
+++++..+..
T Consensus 118 ~a~~~~~~~~ 127 (139)
T 1u6f_A 118 LAASGHQRPG 127 (139)
T ss_dssp ESSCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998766533
No 5
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=1.2e-16 Score=127.30 Aligned_cols=79 Identities=29% Similarity=0.378 Sum_probs=72.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
.+++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++||+.|++..|.|+.|+|+++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4578999999999999999999999999999999865 4799999999999999999999999999999999999876
Q ss_pred CC
Q psy10125 114 KM 115 (312)
Q Consensus 114 ~~ 115 (312)
..
T Consensus 84 ~~ 85 (115)
T 4f25_A 84 KE 85 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.2e-16 Score=120.16 Aligned_cols=81 Identities=31% Similarity=0.387 Sum_probs=75.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.++.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999764 5799999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987764
No 7
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-16 Score=123.20 Aligned_cols=82 Identities=38% Similarity=0.532 Sum_probs=75.2
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
....++|||+|||+.+|+++|+++|++||.|..+.|..+ +++||||+|.+.++|++|++.|++..|.++.|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 345689999999999999999999999999999999764 589999999999999999999999999999999999988
Q ss_pred CCCC
Q psy10125 113 QKMR 116 (312)
Q Consensus 113 ~~~~ 116 (312)
....
T Consensus 99 ~~~~ 102 (109)
T 1x4a_A 99 GRGT 102 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 8
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=119.34 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=74.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+.+|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.++.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34679999999999999999999999999999999865 5799999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887754
No 9
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=124.34 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=74.3
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCC--CceeCCeEEEEEecC
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFD--GREINGRRVRVEMSN 111 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~--g~~i~g~~i~V~~a~ 111 (312)
.+...++|||+|||+++|+++|+++|++||.|.++.|+++ +|||||+|.+.++|++|++.|+ +..|.|+.|+|++++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 3456789999999999999999999999999999999876 8999999999999999999775 478999999999998
Q ss_pred CCCCC
Q psy10125 112 PQKMR 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
++...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87654
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=9.9e-17 Score=122.55 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=71.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhC-CCceeCCeEEEEEec
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYG-PIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGF-DGREINGRRVRVEMS 110 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G-~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l-~g~~i~g~~i~V~~a 110 (312)
+.+|||+|||+++|+++|+++|++|| .|..|.|+++ ++|||||+|.+.++|++|++.+ ++..+.|+.|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 7999988764 6899999999999999999877 467899999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
.+++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887643
No 11
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6.9e-16 Score=117.53 Aligned_cols=79 Identities=25% Similarity=0.464 Sum_probs=73.5
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
....++|||+|||+.+|+++|+++|++||.|..+.++ ++||||+|.+.++|++|+..|++..|.++.|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456899999999999999999999999999999998 6699999999999999999999999999999999998876
Q ss_pred CC
Q psy10125 115 MR 116 (312)
Q Consensus 115 ~~ 116 (312)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 12
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-16 Score=119.52 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=74.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNV-WVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v-~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
..++|||+|||+.+|+++|+++|++||.|..+ .|+.+ ++|||||+|.+.++|++|+..|++..|.++.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999998 88765 5899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
.++...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887754
No 13
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=117.42 Aligned_cols=78 Identities=26% Similarity=0.426 Sum_probs=73.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKM 115 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 115 (312)
...++|||+|||+++|+++|+++|++||.|..+.++ ++||||+|.+.++|++|+..|++..+.++.|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 456899999999999999999999999999999998 79999999999999999999999999999999999988775
Q ss_pred C
Q psy10125 116 R 116 (312)
Q Consensus 116 ~ 116 (312)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=2.2e-16 Score=127.15 Aligned_cols=83 Identities=27% Similarity=0.468 Sum_probs=75.7
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
......+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..|.++.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445689999999999999999999999999999999865 38999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy10125 109 MSNPQKMR 116 (312)
Q Consensus 109 ~a~~~~~~ 116 (312)
++.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876654
No 15
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-15 Score=118.51 Aligned_cols=83 Identities=25% Similarity=0.416 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
....++|||+|||+.+|+++|+++|++||.|..+.|+.+ +++||||+|.+.++|++|+..|++..|.++.|+|+++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 345689999999999999999999999999999999865 48999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 112 PQKMRG 117 (312)
Q Consensus 112 ~~~~~~ 117 (312)
++....
T Consensus 92 ~~~~~~ 97 (103)
T 2cq3_A 92 ARVMTN 97 (103)
T ss_dssp SSCCCC
T ss_pred cCCCCC
Confidence 877543
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-16 Score=120.52 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=75.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 445789999999999999999999999999999999865 468999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy10125 110 SNPQKMR 116 (312)
Q Consensus 110 a~~~~~~ 116 (312)
++++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887754
No 17
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=9.1e-16 Score=119.38 Aligned_cols=77 Identities=22% Similarity=0.478 Sum_probs=72.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKMR 116 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~~ 116 (312)
..++|||+|||+.+|+++|+++|++||.|..+.++ ++||||+|.+.++|++|+..|++..|.++.|+|++++++...
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 45789999999999999999999999999999988 779999999999999999999999999999999999887654
No 18
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-15 Score=118.71 Aligned_cols=81 Identities=27% Similarity=0.336 Sum_probs=75.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.++.|+|+++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 45689999999999999999999999999999999875 579999999999999999999999999999999999988
Q ss_pred CCCC
Q psy10125 113 QKMR 116 (312)
Q Consensus 113 ~~~~ 116 (312)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cqi_A 93 PSSQ 96 (103)
T ss_dssp TTCC
T ss_pred Cccc
Confidence 6654
No 19
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=123.16 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=72.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...+|||+||++.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.||+..|.|+.|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999999865 47999999999999999999999999999999999987
Q ss_pred CCC
Q psy10125 112 PQK 114 (312)
Q Consensus 112 ~~~ 114 (312)
...
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 543
No 20
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=121.43 Aligned_cols=81 Identities=22% Similarity=0.455 Sum_probs=74.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
....+|||+|||+++|+++|+++|++||.|..+.|..+ ++|||||+|.+.++|++|++.|++..|.|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34679999999999999999999999999999999875 47999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy10125 112 PQKMR 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
+....
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76643
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5e-16 Score=120.39 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=75.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..|.++.|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45679999999999999999999999999999999765 6899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987754
No 22
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=4.1e-16 Score=121.49 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=75.7
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCC---eEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREING---RRVR 106 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g---~~i~ 106 (312)
.....++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..+.+ +.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3455789999999999999999999999999999999875 37999999999999999999999999988 9999
Q ss_pred EEecCCCCCC
Q psy10125 107 VEMSNPQKMR 116 (312)
Q Consensus 107 V~~a~~~~~~ 116 (312)
|++++++..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999987754
No 23
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=8.9e-16 Score=114.24 Aligned_cols=77 Identities=22% Similarity=0.446 Sum_probs=71.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
+.+|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999865 379999999999999999999999999999999999987
Q ss_pred CC
Q psy10125 113 QK 114 (312)
Q Consensus 113 ~~ 114 (312)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 24
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-15 Score=119.42 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=72.8
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++||..+++ .|.++.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 345689999999999999999999999999999999865 579999999999999999999998 89999999999
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
+.+...
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=117.85 Aligned_cols=80 Identities=23% Similarity=0.466 Sum_probs=73.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++ |++..|.++.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999864 58999999999999999998 9999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 987654
No 26
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.7e-16 Score=119.61 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=75.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999999999999999999999999999999864 579999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy10125 110 SNPQKMR 116 (312)
Q Consensus 110 a~~~~~~ 116 (312)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9887654
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=9.2e-16 Score=115.19 Aligned_cols=78 Identities=28% Similarity=0.482 Sum_probs=70.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...+|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4579999999999999999999999999999999875 47999999999999999999999999999999999998
Q ss_pred CCC
Q psy10125 112 PQK 114 (312)
Q Consensus 112 ~~~ 114 (312)
+++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 753
No 28
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-15 Score=119.16 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=77.2
Q ss_pred hhcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 32 IARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 32 ~~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
.......++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++||||+|.+.++|++|+..|++..|.|+.|+|++++
T Consensus 19 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 19 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp HHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 344566789999999999999999999999999999999876 8999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy10125 112 PQKMR 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
+++..
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 29
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=118.95 Aligned_cols=80 Identities=15% Similarity=0.294 Sum_probs=74.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeC--CeEEEEEecCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREIN--GRRVRVEMSNP 112 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~--g~~i~V~~a~~ 112 (312)
....++|||+|||+.+|+++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.|++..+. ++.|+|+++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 345689999999999999999999999999999999866 899999999999999999999999999 99999999998
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
++.
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 30
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-15 Score=116.76 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=73.9
Q ss_pred CCceEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeeC--CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIE----DAFSYYGPIKNVWVARN--PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~----~~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
...++|||+|||+.+|+++|+ ++|++||.|..+.|+.+ .++||||+|.+.++|++|+..||+..+.|+.|+|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999999999999999 99999999999999865 389999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
+++...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987664
No 31
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=7.3e-16 Score=122.35 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=72.5
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEe-eCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYG-PIKNVWVA-RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G-~I~~v~i~-~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
+....+|||+|||+++|+++|+++|++|| .|..+.|. .+++|||||+|.+.++|++||+.||+..|.|+.|+|++++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 44568999999999999999999999999 89999886 45799999999999999999999999999999999999876
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
.+.
T Consensus 105 ~p~ 107 (111)
T 2jvr_A 105 PPP 107 (111)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=9.4e-16 Score=119.32 Aligned_cols=78 Identities=29% Similarity=0.274 Sum_probs=71.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCce--eCCeEEEEEecCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGRE--INGRRVRVEMSNPQ 113 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~--i~g~~i~V~~a~~~ 113 (312)
..+.+|||+|||+.+|+++|+++|++||.|.++.+++ .+|||||+|.+.++|.+|+..|++.. +.|+.|.|++++.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 4567999999999999999999999999999999875 48999999999999999999998764 78999999999875
Q ss_pred C
Q psy10125 114 K 114 (312)
Q Consensus 114 ~ 114 (312)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.5e-16 Score=119.73 Aligned_cols=81 Identities=31% Similarity=0.521 Sum_probs=74.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..|.++.|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999864 5899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 887654
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-15 Score=116.65 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=73.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
..++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.++.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4578999999999999999999999999999998853 35899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy10125 109 MSNPQKMR 116 (312)
Q Consensus 109 ~a~~~~~~ 116 (312)
+++++...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99887654
No 35
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=8.2e-16 Score=116.37 Aligned_cols=75 Identities=9% Similarity=0.132 Sum_probs=70.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
..+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|++|++.||+..+.++.|+|+++.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3467899999999999999999999999999999876 69999999999999999999999999999999999884
No 36
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.2e-16 Score=119.78 Aligned_cols=81 Identities=32% Similarity=0.626 Sum_probs=74.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.++.|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45689999999999999999999999999999999864 5799999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
++....
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 876654
No 37
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=114.83 Aligned_cols=78 Identities=29% Similarity=0.453 Sum_probs=72.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
..++|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999999999998653 5899999999999999999999999999999999999
Q ss_pred CCCC
Q psy10125 111 NPQK 114 (312)
Q Consensus 111 ~~~~ 114 (312)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7754
No 38
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.5e-16 Score=121.69 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=71.6
Q ss_pred CCceEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCC--ceeCCeEEEEEecCC
Q psy10125 36 MLVIYVSIVLCST-SSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG--REINGRRVRVEMSNP 112 (312)
Q Consensus 36 ~~~~~l~V~nLp~-~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g--~~i~g~~i~V~~a~~ 112 (312)
..+.+|||+|||+ .+|++||+++|++||.|..+.|+++ ++||||+|.+.++|++|++.|++ ..|.|+.|.|++++.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3568999999999 9999999999999999999999865 79999999999999999998875 469999999999987
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
...
T Consensus 92 ~~~ 94 (102)
T 1x4d_A 92 YKR 94 (102)
T ss_dssp CTT
T ss_pred CCC
Confidence 553
No 39
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=115.68 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=73.0
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.++ ++||||+|.+.++|++|+..|++..+.++.|+|+++++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456799999999999999999999999999999998 6699999999999999999999999999999999998875
Q ss_pred CC
Q psy10125 115 MR 116 (312)
Q Consensus 115 ~~ 116 (312)
..
T Consensus 83 ~~ 84 (90)
T 2dnp_A 83 KK 84 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 40
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=115.82 Aligned_cols=78 Identities=24% Similarity=0.447 Sum_probs=72.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYY--GPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~--G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
....+|||+|||+.+|+++|+++|++| |.|..+.+. ++||||+|.+.++|++|+..|++..|.++.|+|++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 456899999999999999999999999 999988876 789999999999999999999999999999999999886
Q ss_pred CCC
Q psy10125 114 KMR 116 (312)
Q Consensus 114 ~~~ 116 (312)
...
T Consensus 90 ~~~ 92 (99)
T 2cpd_A 90 DKD 92 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9e-16 Score=119.82 Aligned_cols=82 Identities=23% Similarity=0.449 Sum_probs=75.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC------CCcEEEEEeCCHHHHHHHHHhC-CCceeCCeEEEE
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN------PPGFGFVEFEDRRDAEDAVRGF-DGREINGRRVRV 107 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~------~kG~afV~f~~~~~A~~Ai~~l-~g~~i~g~~i~V 107 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..| ++..|.++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345689999999999999999999999999999999765 4899999999999999999999 999999999999
Q ss_pred EecCCCCCC
Q psy10125 108 EMSNPQKMR 116 (312)
Q Consensus 108 ~~a~~~~~~ 116 (312)
++++++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999987654
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.3e-16 Score=119.74 Aligned_cols=82 Identities=26% Similarity=0.416 Sum_probs=75.5
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
....++|||+|||+.+|+++|+++|++||.|..+.|+.+ +++||||+|.+.++|++|+..|++..|.++.|.|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 345689999999999999999999999999999999864 57999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy10125 112 PQKMR 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=8.6e-16 Score=121.80 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=74.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.++.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45679999999999999999999999999999999865 3689999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
+++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 887654
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=118.40 Aligned_cols=81 Identities=28% Similarity=0.411 Sum_probs=74.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..+.++.|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345679999999999999999999999999999999875 3699999999999999999999999999999999999
Q ss_pred CCCCC
Q psy10125 111 NPQKM 115 (312)
Q Consensus 111 ~~~~~ 115 (312)
++++.
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88765
No 45
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=6e-16 Score=119.82 Aligned_cols=78 Identities=59% Similarity=0.997 Sum_probs=73.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKMR 116 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~~ 116 (312)
++|||+|||+++|+++|+++|++||.|..+.++.+++|||||+|.+.++|++|+..|++..+.|+.|+|++++++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 489999999999999999999999999999998778999999999999999999999999999999999999887643
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=1.2e-15 Score=114.05 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=70.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999998764 5899999999999999999999999999999999987
Q ss_pred C
Q psy10125 111 N 111 (312)
Q Consensus 111 ~ 111 (312)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=5.5e-16 Score=119.62 Aligned_cols=77 Identities=18% Similarity=0.366 Sum_probs=69.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCC--eeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCc----eeCCeE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGP--IKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGR----EINGRR 104 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~--I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~----~i~g~~ 104 (312)
....||||+|||+++|+++|+++|++||. +.+|.++++ ++|||||+|.+.++|++|++.||+. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34679999999999999999999999995 568888764 6899999999999999999999885 589999
Q ss_pred EEEEecCC
Q psy10125 105 VRVEMSNP 112 (312)
Q Consensus 105 i~V~~a~~ 112 (312)
|.|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 48
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-15 Score=117.09 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=72.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhC--CCceeCCeEEEEEecCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF--DGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l--~g~~i~g~~i~V~~a~~~ 113 (312)
..+.+|||+|||+.+|+++|+++|++||.|..+.|+.+ +|||||+|.+.++|++|+..| ++..+.|+.|.|++++.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 34679999999999999999999999999999988865 899999999999999999976 467899999999999987
Q ss_pred CCC
Q psy10125 114 KMR 116 (312)
Q Consensus 114 ~~~ 116 (312)
...
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 654
No 49
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.5e-16 Score=121.12 Aligned_cols=84 Identities=18% Similarity=0.315 Sum_probs=76.1
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEEeeC--------CCcEEEEEeCCHHHHHHHHHhCCCceeC
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIE---DAFSYYGPIKNVWVARN--------PPGFGFVEFEDRRDAEDAVRGFDGREIN 101 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~---~~F~~~G~I~~v~i~~~--------~kG~afV~f~~~~~A~~Ai~~l~g~~i~ 101 (312)
.+.....+|||+|||+.+|+++|+ ++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.||+..|.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 355567899999999999999999 99999999999999864 3489999999999999999999999999
Q ss_pred CeEEEEEecCCCCCC
Q psy10125 102 GRRVRVEMSNPQKMR 116 (312)
Q Consensus 102 g~~i~V~~a~~~~~~ 116 (312)
|+.|+|+++.++...
T Consensus 90 gr~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 90 GRTLKASLGTTKYCS 104 (111)
T ss_dssp TEEEEEESCCCCSCS
T ss_pred CEEEEEEeccccccc
Confidence 999999999987743
No 50
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.2e-16 Score=118.52 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=71.9
Q ss_pred CCCceEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 35 YMLVIYVSIVLCST-SSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 35 ~~~~~~l~V~nLp~-~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
....++|||+|||+ .+|+++|+++|++||.|..+.|. +|||||+|.+.++|++|+..|++..+.|+.|+|++++++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 44578999999998 99999999999999999999996 899999999999999999999999999999999999876
Q ss_pred CCC
Q psy10125 114 KMR 116 (312)
Q Consensus 114 ~~~ 116 (312)
...
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
No 51
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=5.1e-15 Score=117.21 Aligned_cols=82 Identities=29% Similarity=0.469 Sum_probs=75.4
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..|.++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999875 379999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy10125 110 SNPQKMR 116 (312)
Q Consensus 110 a~~~~~~ 116 (312)
++++...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9887654
No 52
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=120.42 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=75.1
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCcee
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIK--------NVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI 100 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~--------~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i 100 (312)
......+|||+|||+.+|+++|+++|++||.|. .+.|+.+ ++|||||+|.+.++|++|+..|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345568999999999999999999999999998 5888764 479999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCC
Q psy10125 101 NGRRVRVEMSNPQKMR 116 (312)
Q Consensus 101 ~g~~i~V~~a~~~~~~ 116 (312)
.++.|+|++++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999887654
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=118.18 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=75.2
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCC------CceeCCe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFD------GREINGR 103 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~------g~~i~g~ 103 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|+ +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 345679999999999999999999999999999999864 58999999999999999999999 9999999
Q ss_pred EEEEEecCCCCCC
Q psy10125 104 RVRVEMSNPQKMR 116 (312)
Q Consensus 104 ~i~V~~a~~~~~~ 116 (312)
.|+|+++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999887654
No 54
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=3.9e-15 Score=144.66 Aligned_cols=83 Identities=29% Similarity=0.591 Sum_probs=75.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+.+|+++|+.+|++||.|+.|.|+.+ ++|||||+|.+.++|++||..||++.|.|+.|.|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999864 5899999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy10125 111 NPQKMRGR 118 (312)
Q Consensus 111 ~~~~~~~~ 118 (312)
.++...+.
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 88665433
No 55
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=120.64 Aligned_cols=78 Identities=23% Similarity=0.377 Sum_probs=72.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
.++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++||.. ++..|.|+.|+|+++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 479999999999999999999999999999999865 579999999999999999987 99999999999999988
Q ss_pred CCCC
Q psy10125 113 QKMR 116 (312)
Q Consensus 113 ~~~~ 116 (312)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7654
No 56
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=3.3e-15 Score=116.08 Aligned_cols=79 Identities=23% Similarity=0.401 Sum_probs=72.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+++|+++|+++|++|| |..+.|+.+ ++|||||+|.+.++|++|+ .|++..|.++.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4468999999999999999999999996 999999865 3789999999999999999 89999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887654
No 57
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.62 E-value=1.6e-15 Score=119.39 Aligned_cols=77 Identities=31% Similarity=0.485 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 36 MLVIYVSIVLCSTS-STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 36 ~~~~~l~V~nLp~~-~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
...++|||+|||+. +|+++|+++|++||.|..+.|. ++||||+|.+.++|++|+..|++..|.++.|+|+++++..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH---KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE---TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 34579999999999 9999999999999999999984 8999999999999999999999999999999999998654
Q ss_pred C
Q psy10125 115 M 115 (312)
Q Consensus 115 ~ 115 (312)
.
T Consensus 102 ~ 102 (110)
T 1wf1_A 102 P 102 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 58
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.6e-15 Score=116.07 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=72.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....+|||+|||+.+|+++|+++|++|| |..+.|+.+ ++|||||+|.+.++|++|| .|++..|.++.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3458999999999999999999999999 999999854 3789999999999999999 9999999999999999
Q ss_pred cCCCCCC
Q psy10125 110 SNPQKMR 116 (312)
Q Consensus 110 a~~~~~~ 116 (312)
+.++...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 59
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=3.4e-15 Score=115.19 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=72.1
Q ss_pred hcCCCceEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 33 ARYMLVIYVSIVLCST-SSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~-~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
......++|||+|||+ .+|+++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|++..+.|+.|+|++++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 3455678999999998 99999999999999999999985 8999999999999999999999999999999999987
Q ss_pred CCC
Q psy10125 112 PQK 114 (312)
Q Consensus 112 ~~~ 114 (312)
++.
T Consensus 94 ~~~ 96 (97)
T 2xnq_A 94 SNA 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=114.27 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=71.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....++|||+|||+.+|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|++..|.++.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 345679999999999999999999999999999999864 579999999999999999999999999999999998
Q ss_pred cC
Q psy10125 110 SN 111 (312)
Q Consensus 110 a~ 111 (312)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 61
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=3.2e-15 Score=114.68 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=72.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
+++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 468999999999999999999999999999999865 489999999999999999999999999999999999988
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 62
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-15 Score=116.11 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=74.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.+.++ ++||||+|.+.++|++|++.|++..|.++.|+|++++++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 445679999999999999999999999999999999855 8999999999999999999999999999999999998866
Q ss_pred CC
Q psy10125 115 MR 116 (312)
Q Consensus 115 ~~ 116 (312)
..
T Consensus 91 ~~ 92 (99)
T 2cpj_A 91 SL 92 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 63
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=2.4e-15 Score=117.33 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=74.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCcee---CCeEEEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI---NGRRVRV 107 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i---~g~~i~V 107 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..+ .++.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 45689999999999999999999999999999999864 579999999999999999999999887 8899999
Q ss_pred EecCCCCCC
Q psy10125 108 EMSNPQKMR 116 (312)
Q Consensus 108 ~~a~~~~~~ 116 (312)
+++.++...
T Consensus 91 ~~a~~~~~~ 99 (106)
T 2dgp_A 91 KPADSESRG 99 (106)
T ss_dssp EECCCCSCC
T ss_pred EECCccccc
Confidence 999887654
No 64
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=120.97 Aligned_cols=80 Identities=14% Similarity=0.266 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCC--ceeCCeEEEEEecCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG--REINGRRVRVEMSNPQ 113 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g--~~i~g~~i~V~~a~~~ 113 (312)
....+|||+|||+++|+++|+++|++||.|..+.|+.+ +|||||+|.+.++|++|++.+++ ..|.|+.|+|++++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 34679999999999999999999999999999999876 89999999999999999998874 6899999999999887
Q ss_pred CCC
Q psy10125 114 KMR 116 (312)
Q Consensus 114 ~~~ 116 (312)
...
T Consensus 108 ~~~ 110 (119)
T 2ad9_A 108 ELK 110 (119)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 65
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=3.1e-15 Score=117.85 Aligned_cols=80 Identities=21% Similarity=0.386 Sum_probs=73.2
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
......++|||+|||+.+|+++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|++..+.|+.|.|+++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 344567899999999999999999999999999999998 89999999999999999999999999999999999988
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
++.
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 664
No 66
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-15 Score=114.77 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCC-ceeCCeEEEEEecCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGP-IKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG-REINGRRVRVEMSNPQ 113 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~-I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g-~~i~g~~i~V~~a~~~ 113 (312)
...++|||+|||+++|+++|+++|++||. |..+.+. +++||||+|.+.++|++|+..|++ ..+.++.|+|++++++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 34579999999999999999999999999 6655554 489999999999999999999999 9999999999999887
Q ss_pred CCC
Q psy10125 114 KMR 116 (312)
Q Consensus 114 ~~~ 116 (312)
..+
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 67
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=117.25 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=74.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCce-eCCeEEEEEe
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSY-YGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGRE-INGRRVRVEM 109 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~-~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~-i~g~~i~V~~ 109 (312)
....+|||+|||+++|+++|+++|++ ||.|..+.|+.+ ++|||||+|.+.++|++|+..|++.. |.++.|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 44678999999999999999999999 999999999875 57999999999999999999999999 9999999999
Q ss_pred cCCCCCC
Q psy10125 110 SNPQKMR 116 (312)
Q Consensus 110 a~~~~~~ 116 (312)
+.++...
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 9876654
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=114.15 Aligned_cols=78 Identities=33% Similarity=0.527 Sum_probs=71.8
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
+....+|||+|||+.+|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.++.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345678999999999999999999999999999999864 468999999999999999999999999999999999
Q ss_pred cCC
Q psy10125 110 SNP 112 (312)
Q Consensus 110 a~~ 112 (312)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 69
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.3e-15 Score=121.30 Aligned_cols=77 Identities=26% Similarity=0.342 Sum_probs=67.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeE-----EEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRR-----VRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~-----i~V~~a~ 111 (312)
...+|||+|||+++|+++|+++|++||.|..+.|+.+ |||||+|.+.++|++||+.||+..|.|+. |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3578999999999999999999999999999999865 99999999999999999999999999988 7777776
Q ss_pred CCCC
Q psy10125 112 PQKM 115 (312)
Q Consensus 112 ~~~~ 115 (312)
++..
T Consensus 93 ~~~~ 96 (115)
T 3beg_B 93 PRSP 96 (115)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 70
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.1e-15 Score=115.71 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
....++|||+|||+++|+++|+++|++||.|..+.+. .++|||||+|.+.++|++|+..|++..+.|+.|+|++++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 3446899999999999999999999999999999988 45899999999999999999999999999999999998763
No 71
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=3.3e-15 Score=117.38 Aligned_cols=82 Identities=23% Similarity=0.426 Sum_probs=74.9
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
......+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.|+.|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3455689999999999999999999999999999999765 47999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy10125 109 MSNPQKM 115 (312)
Q Consensus 109 ~a~~~~~ 115 (312)
++.+++.
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987654
No 72
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.8e-15 Score=116.81 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=71.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCC--ceeCCeEEEEEecCCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG--REINGRRVRVEMSNPQK 114 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g--~~i~g~~i~V~~a~~~~ 114 (312)
.+.+|||+|||+.+|+++|+++|++||.|..+.|+.+ +|||||+|.+.++|.+|+..|++ ..|.|+.|.|++++.+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 4579999999999999999999999999999998764 89999999999999999998865 45899999999998766
Q ss_pred CC
Q psy10125 115 MR 116 (312)
Q Consensus 115 ~~ 116 (312)
..
T Consensus 93 ~~ 94 (104)
T 1wex_A 93 IT 94 (104)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=117.32 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=74.1
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999865 369999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
+.+++.
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 74
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=5.6e-15 Score=111.35 Aligned_cols=76 Identities=21% Similarity=0.441 Sum_probs=70.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+|||+|||+++|+++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|+ .|++..+.|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999865 4899999999999999999 8999999999999999887
Q ss_pred CC
Q psy10125 113 QK 114 (312)
Q Consensus 113 ~~ 114 (312)
..
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=3.1e-15 Score=113.60 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=73.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..+.++.|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34679999999999999999999999999999999864 479999999999999999999999999999999999987
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 76
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=117.88 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=74.2
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
......+|||+|||..+|+++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|+..|++..+.|+.|+|+++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3345689999999999999999999999999999999865 5899999999999999999999999999999999999
Q ss_pred CCCC
Q psy10125 111 NPQK 114 (312)
Q Consensus 111 ~~~~ 114 (312)
+++.
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8753
No 77
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.8e-15 Score=113.81 Aligned_cols=79 Identities=29% Similarity=0.437 Sum_probs=70.1
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....++|||+|||+.+|+++|+++|++||.| .++.+ ++|||||+|.+.++|++|+..|++..|.++.|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3456899999999999999999999999987 33332 6899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
+++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 887653
No 78
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=116.33 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++||.. ++..|.++.|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345689999999999999999999999999999999875 368999999999999999998 99999999999999
Q ss_pred cCCCCCC
Q psy10125 110 SNPQKMR 116 (312)
Q Consensus 110 a~~~~~~ 116 (312)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9887654
No 79
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.59 E-value=6.3e-16 Score=117.42 Aligned_cols=77 Identities=23% Similarity=0.263 Sum_probs=66.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYG--PIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G--~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
.+|||+|||+++|+++|+++|++|| .|..+.++.+ ++|||||+|.+.++|++|++.||+..+.|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999875 47999999999999999999999999999999999998
Q ss_pred CCCC
Q psy10125 112 PQKM 115 (312)
Q Consensus 112 ~~~~ 115 (312)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 80
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=110.87 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=69.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhC-CCceeCCeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF-DGREINGRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l-~g~~i~g~~i~V~~a~ 111 (312)
....+|||+|||+.+|+++|+++|++||.|..+.++.+ +|||||+|.+.++|++|+..| ++..+.|+.|+|++++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 44579999999999999999999999999999999864 899999999999999999988 9999999999999874
No 81
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=5.4e-15 Score=112.89 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=71.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..+.++.|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 45689999999999999999999999999999999875 37899999999999999999999999999999999876
Q ss_pred C
Q psy10125 112 P 112 (312)
Q Consensus 112 ~ 112 (312)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 82
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=114.62 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeE----E
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIK-NVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRR----V 105 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~-~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~----i 105 (312)
...++|||+|||+++|+++|+++|++||.|. .+.|+.+ ++|||||+|.+.++|++|++.|++..+.++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999865 4699999999999999999999999999999 9
Q ss_pred EEEecCCCCC
Q psy10125 106 RVEMSNPQKM 115 (312)
Q Consensus 106 ~V~~a~~~~~ 115 (312)
+|+++++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999887553
No 83
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=114.72 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=73.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...++|||+|||+.+|+++|+++|++||.|..+.|+.+ +++||||+|.+.++|++|+..|++..|.++.|.|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 34679999999999999999999999999999999875 47899999999999999999999999999999999997
Q ss_pred CCCCC
Q psy10125 112 PQKMR 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
.....
T Consensus 93 ~~~~~ 97 (114)
T 2do0_A 93 RALPK 97 (114)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 65443
No 84
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=6.1e-15 Score=112.09 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=64.0
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
....++|||+|||+++|+++|+++|++||.|.++.|+.+++|||||+|.+.++|+++. . ..+.+.++.|.|.++.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~-~-~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLC-G-EDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHT-T-CEEEETTEEEEEEECC---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHc-C-CCcccCCEEEEEEEcCCCC
Confidence 3456899999999999999999999999999999999889999999999999998432 1 1345679999999988765
Q ss_pred C
Q psy10125 115 M 115 (312)
Q Consensus 115 ~ 115 (312)
.
T Consensus 86 ~ 86 (89)
T 3d2w_A 86 N 86 (89)
T ss_dssp -
T ss_pred c
Confidence 3
No 85
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=8.2e-15 Score=114.42 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=71.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.|+.|+|+++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 345689999999999999999999999999999999865 4789999999999999999999999999999999997
Q ss_pred C
Q psy10125 111 N 111 (312)
Q Consensus 111 ~ 111 (312)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 86
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=110.42 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=72.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
....+|||+|||+.+|+++|+++|++| .|..+.|+.+ ++|||||+|.+.++|++|+. |++..|.++.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456899999999999999999999999 9999999875 47899999999999999999 99999999999999998
Q ss_pred CCCC
Q psy10125 112 PQKM 115 (312)
Q Consensus 112 ~~~~ 115 (312)
+++.
T Consensus 86 ~~~~ 89 (91)
T 2dgw_A 86 SGPS 89 (91)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8754
No 87
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=113.81 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee-CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR-NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~-~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
.....+|||+|||+.+|+++|+++|++||.|. +.++. .++|||||+|.+.++|++|+..|++..|.|+.|+|++++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34568999999999999999999999999996 55543 47899999999999999999999999999999999999876
Q ss_pred CC
Q psy10125 114 KM 115 (312)
Q Consensus 114 ~~ 115 (312)
+.
T Consensus 95 ~~ 96 (97)
T 2e5j_A 95 RD 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 88
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=6e-15 Score=117.33 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=70.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..|.++.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999999864 489999999999999999999999999999999998
Q ss_pred cC
Q psy10125 110 SN 111 (312)
Q Consensus 110 a~ 111 (312)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 89
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=119.91 Aligned_cols=81 Identities=26% Similarity=0.243 Sum_probs=72.2
Q ss_pred CCCceEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCC--CceeCCeEEEEEecC
Q psy10125 35 YMLVIYVSIVLCSTS-STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFD--GREINGRRVRVEMSN 111 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~-~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~--g~~i~g~~i~V~~a~ 111 (312)
...+++|||+|||++ +|+++|+++|++||.|..+.|++ .+|||||+|.+.++|++|+..|+ ...|.|+.|+|++++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 445789999999998 99999999999999999999975 48999999999999999999875 456999999999998
Q ss_pred CCCCC
Q psy10125 112 PQKMR 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
.+...
T Consensus 101 ~~~~~ 105 (112)
T 1x4f_A 101 KYKKL 105 (112)
T ss_dssp SCSSS
T ss_pred ccccc
Confidence 76543
No 90
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=6.8e-15 Score=118.04 Aligned_cols=79 Identities=25% Similarity=0.416 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+ .|++..|.|+.|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34679999999999999999999999999999999764 4899999999999999999 89999999999999999
Q ss_pred CCCCC
Q psy10125 111 NPQKM 115 (312)
Q Consensus 111 ~~~~~ 115 (312)
++...
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 87654
No 91
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=3.8e-15 Score=121.15 Aligned_cols=82 Identities=33% Similarity=0.532 Sum_probs=75.1
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
.+....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.|+.|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455789999999999999999999999999999999864 58999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy10125 109 MSNPQKM 115 (312)
Q Consensus 109 ~a~~~~~ 115 (312)
++.++++
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9987653
No 92
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.8e-15 Score=111.39 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=68.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKMR 116 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~~ 116 (312)
..++|||+|||+++|+++|+++|++||.|..+.|+.+++|||||+|.+.++|++++.. .+.+.++.|.|.++.++...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 4689999999999999999999999999999999988899999999999999865432 45669999999999877654
No 93
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.57 E-value=4.3e-15 Score=123.30 Aligned_cols=80 Identities=56% Similarity=0.930 Sum_probs=75.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
....++|||+|||+.+|+++|+++|++||.|..+.|+.+++|||||+|.+.++|..|+..|++..|.|+.|+|+++++++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 34568999999999999999999999999999999998889999999999999999999999999999999999998764
No 94
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.57 E-value=5.1e-15 Score=114.17 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=71.3
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCcee
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN--------VWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREI 100 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~--------v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i 100 (312)
.+...++|||+|||+++|+++|+++|++||.|.. +.++.+ ++|||||+|.+.++|++|++.|++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3455689999999999999999999999999999 888865 378999999999999999999999999
Q ss_pred CCeEEEEEecC
Q psy10125 101 NGRRVRVEMSN 111 (312)
Q Consensus 101 ~g~~i~V~~a~ 111 (312)
.|+.|+|++++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 95
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.2e-14 Score=109.30 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=72.0
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
....++|||+|| .+|+++|+++|++||.|..+.|. .++|||||+|.+.++|++|+..|++..|.++.|+|+++++++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 345689999996 89999999999999999999886 568999999999999999999999999999999999998876
Q ss_pred CC
Q psy10125 115 MR 116 (312)
Q Consensus 115 ~~ 116 (312)
..
T Consensus 89 ~~ 90 (97)
T 1x5p_A 89 ML 90 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 96
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=1.6e-14 Score=113.79 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=70.5
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
......+|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..++ ..|.|+.|.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEE
Confidence 3345689999999999999999999999999999999865 47999999999999999998775 99999999999
Q ss_pred ecCCCCC
Q psy10125 109 MSNPQKM 115 (312)
Q Consensus 109 ~a~~~~~ 115 (312)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987664
No 97
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=1.5e-14 Score=117.75 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=74.5
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcE-EEEEeCCHHHHHHHHHhCCCceeCC--eEEEEEe
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGF-GFVEFEDRRDAEDAVRGFDGREING--RRVRVEM 109 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~-afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~ 109 (312)
..+.....|||+||++.+|+++|+++|++||.|.+|.+..+.++| |||+|.+.++|+.|++.||+..|.+ ..|+|++
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 344556789999999999999999999999999999988777888 9999999999999999999999988 8999999
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
+++...
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 987653
No 98
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=6.1e-15 Score=116.07 Aligned_cols=79 Identities=20% Similarity=0.383 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..|.|+.|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44689999999999999999999999999999999864 4789999999999999999999999999999999999
Q ss_pred CCCC
Q psy10125 111 NPQK 114 (312)
Q Consensus 111 ~~~~ 114 (312)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 99
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.8e-15 Score=115.06 Aligned_cols=75 Identities=21% Similarity=0.214 Sum_probs=69.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
...+|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+. +++..+.|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4578999999999999999999999999999999865 68999999999999999998 899999999999998764
No 100
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9e-15 Score=115.67 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=72.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEee-CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPI----KNVWVAR-NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I----~~v~i~~-~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+.+|+++|+++|++||.| ..+.+.. .++|||||+|.+.++|++|+..|++..|.++.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 346899999999999999999999999998 5555553 36899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
+++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 987654
No 101
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.6e-15 Score=113.57 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=70.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+.+|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|++..|.++.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34589999999999999999999999999976655542 4799999999999999999999999999999999998
Q ss_pred CCCC
Q psy10125 111 NPQK 114 (312)
Q Consensus 111 ~~~~ 114 (312)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7543
No 102
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.8e-15 Score=113.55 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=69.5
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
.....++|||+|||+.+|+++|+++|+.|+ .+.++.+ ++|||||+|.+.++|++||..|++..|.++.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345568999999999999999999999885 4444443 46999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy10125 109 MSNPQKMR 116 (312)
Q Consensus 109 ~a~~~~~~ 116 (312)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99987654
No 103
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-15 Score=118.00 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=71.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|| .|++..|.|+.|+|++++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999853 5799999999999999999 999999999999999998
Q ss_pred CCCC
Q psy10125 112 PQKM 115 (312)
Q Consensus 112 ~~~~ 115 (312)
++..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7553
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=114.06 Aligned_cols=81 Identities=22% Similarity=0.250 Sum_probs=73.1
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEe-e-----CCCcEEEEEeCCHHHHHHHHHhCC--CceeCCeEE
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGP-IKNVWVA-R-----NPPGFGFVEFEDRRDAEDAVRGFD--GREINGRRV 105 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~-I~~v~i~-~-----~~kG~afV~f~~~~~A~~Ai~~l~--g~~i~g~~i 105 (312)
....++|||+|||+.+|+++|+++|++||. |..+.++ . .++|||||+|.+.++|++|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345689999999999999999999999998 9999887 3 368999999999999999999996 589999999
Q ss_pred EEEecCCCCC
Q psy10125 106 RVEMSNPQKM 115 (312)
Q Consensus 106 ~V~~a~~~~~ 115 (312)
+|+++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987664
No 105
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3e-14 Score=110.53 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=71.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+.. +..|.|+.|.|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEec
Confidence 44678999999999999999999999999999999875 368999999999999999984 67999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 887654
No 106
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=2.3e-15 Score=116.80 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=71.8
Q ss_pred CceEEEEcCCCC------CCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCC-eE
Q psy10125 37 LVIYVSIVLCST------SSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREING-RR 104 (312)
Q Consensus 37 ~~~~l~V~nLp~------~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g-~~ 104 (312)
..++|||+|||. .+++++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 9999999999999999999999854 57999999999999999999999999999 99
Q ss_pred EEEEecCCCC
Q psy10125 105 VRVEMSNPQK 114 (312)
Q Consensus 105 i~V~~a~~~~ 114 (312)
|+|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999987643
No 107
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.2e-15 Score=114.59 Aligned_cols=79 Identities=23% Similarity=0.204 Sum_probs=70.1
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.+....+|||+|||+++|++||+++|++||. ..+.|+.+ ++|||||+|.+.++|++|| .+++..|.++.|+|..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 4456689999999999999999999999995 48888765 5789999999999999999 5799999999999998
Q ss_pred cCCCC
Q psy10125 110 SNPQK 114 (312)
Q Consensus 110 a~~~~ 114 (312)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87655
No 108
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=8.1e-15 Score=115.94 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=71.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
..++|||+|||+.+|+++|+++|++||.|..+.|.. .++||||+|.+.++|++|+..||+..|.++.|.|+++....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 457999999999999999999999999999998874 58999999999999999999999999999999999997643
No 109
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=3e-16 Score=124.72 Aligned_cols=81 Identities=23% Similarity=0.289 Sum_probs=73.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN--------VWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREING 102 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~--------v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g 102 (312)
....+|||+|||+.+|+++|+++|++||.|.. +.|+.+ ++|||||+|.+.++|++|+..|++..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34578999999999999999999999999988 777654 57999999999999999999999999999
Q ss_pred eEEEEEecCCCCCC
Q psy10125 103 RRVRVEMSNPQKMR 116 (312)
Q Consensus 103 ~~i~V~~a~~~~~~ 116 (312)
+.|+|++++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987754
No 110
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=122.14 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=70.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYG--PIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G--~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
...+|||+|||+++|+++|+++|++|| .|..+.|+.+ ++|||||+|.+.++|++||..|++..|.|+.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 9999999865 479999999999999999999999999999999999
Q ss_pred cCCC
Q psy10125 110 SNPQ 113 (312)
Q Consensus 110 a~~~ 113 (312)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 111
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.2e-15 Score=114.06 Aligned_cols=78 Identities=32% Similarity=0.586 Sum_probs=72.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
.++|||+|||+.+|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|+++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 468999999999999999999999999999999865 379999999999999999999999999999999999988
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
+..
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 664
No 112
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=2.6e-14 Score=114.82 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=75.3
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.....++|||+|||+.+|+++|+++|++||.|..+.|..+ ++|||||+|.+.++|++|+..|++..|.|+.|+|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3355689999999999999999999999999999999865 589999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987654
No 113
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=4.6e-15 Score=114.92 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=69.4
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
.....++|||+|||+++|+++|+++|++|| |..+.|+.+ ++|||||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345568999999999999999999999999 999999765 4899999999999999999 89999999999999
Q ss_pred EecCCCC
Q psy10125 108 EMSNPQK 114 (312)
Q Consensus 108 ~~a~~~~ 114 (312)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998754
No 114
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=1.2e-14 Score=111.29 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEee--CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIE----DAFSYYGPIKNVWVAR--NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~----~~F~~~G~I~~v~i~~--~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
...++|||+|||+.+|+++|+ ++|++||.|..+.+.. .++|||||+|.+.++|++|+..|++..+.|+.|+|++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999 9999999999998874 2589999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
+++...
T Consensus 86 a~~~~~ 91 (97)
T 1nu4_A 86 AKTDSD 91 (97)
T ss_dssp CSSCCT
T ss_pred ccCCCc
Confidence 987653
No 115
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.7e-14 Score=108.35 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=67.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKMR 116 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~~ 116 (312)
...+|||+|||+++|+++|+++|++||.|..|.+......||||+|.+.++|++|+. |++..|.|+.|.|+++.++...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 457999999999999999999999999999872222211299999999999999999 9999999999999988766543
No 116
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=2.8e-14 Score=107.21 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=67.6
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++ +++..|.|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999999865 37999999999999999996 578889999999987
Q ss_pred c
Q psy10125 110 S 110 (312)
Q Consensus 110 a 110 (312)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 117
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=1.4e-14 Score=114.61 Aligned_cols=79 Identities=28% Similarity=0.401 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC--CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN--PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..+.|+.|.|+++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 44679999999999999999999999999999999864 5799999999999999999999999999999999999864
Q ss_pred C
Q psy10125 114 K 114 (312)
Q Consensus 114 ~ 114 (312)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 118
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.54 E-value=2.6e-14 Score=119.27 Aligned_cols=81 Identities=30% Similarity=0.583 Sum_probs=74.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.|+.|.|+++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44689999999999999999999999999999999864 6899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
++....
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 886543
No 119
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=5.2e-15 Score=131.87 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=70.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYG--PIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G--~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
..++|||+||++++|+++|+++|++|| .|..|.|+++ ++|||||+|.+.++|++||+.|++..|.++.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999999875 579999999999999999999999999999999999
Q ss_pred cCC
Q psy10125 110 SNP 112 (312)
Q Consensus 110 a~~ 112 (312)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 865
No 120
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=5.6e-15 Score=112.81 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=68.1
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...+|||+|||+.+|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|++..|.++.|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3589999999999999999999999999987766642 47999999999999999999999999999999999876
Q ss_pred C
Q psy10125 112 P 112 (312)
Q Consensus 112 ~ 112 (312)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=117.18 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=72.0
Q ss_pred CCceEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEee--CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIE----DAFSYYGPIKNVWVAR--NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~----~~F~~~G~I~~v~i~~--~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....+|||+|||+.+++++|+ ++|++||.|..|.+.. .++|||||+|.+.++|..|+..||+..|.|+.|+|++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346799999999999999876 6899999999998865 3689999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
++.+..
T Consensus 107 a~~~~~ 112 (127)
T 2a3j_A 107 SETPQS 112 (127)
T ss_dssp CCCCCH
T ss_pred ccCcch
Confidence 987653
No 122
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-14 Score=116.02 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=70.7
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
......+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..|.|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999764 58999999999999999999999999999999998
Q ss_pred ec
Q psy10125 109 MS 110 (312)
Q Consensus 109 ~a 110 (312)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 123
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=112.52 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=71.7
Q ss_pred CceEEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCe-EEE
Q psy10125 37 LVIYVSIVLCSTSS------TKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGR-RVR 106 (312)
Q Consensus 37 ~~~~l~V~nLp~~~------teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~-~i~ 106 (312)
..++|||+|||+.+ |+++|+++|++||.|..+.|+.. ++|||||+|.+.++|++|+..|++..|.|+ .|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 35799999999999 78999999999999999998742 589999999999999999999999999998 999
Q ss_pred EEecCCCCC
Q psy10125 107 VEMSNPQKM 115 (312)
Q Consensus 107 V~~a~~~~~ 115 (312)
|+++....+
T Consensus 94 V~~a~~~~k 102 (105)
T 2nlw_A 94 VNLFTDFDK 102 (105)
T ss_dssp EECSCCCCC
T ss_pred EEEcchHhh
Confidence 999876543
No 124
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=2e-14 Score=121.33 Aligned_cols=81 Identities=22% Similarity=0.431 Sum_probs=73.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+.+|+++|+.+|++||.|..|.|+.+ ++|||||+|.+.++|++||..|++..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44678999999999999999999999999999999875 4799999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
.++...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876653
No 125
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=9e-15 Score=106.83 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=65.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 40 YVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 40 ~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
+|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999998764 47999999999999999997 9999999999999874
No 126
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=110.96 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=70.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKM 115 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 115 (312)
....+|||+|||+.+|+++|+++|++||.|..+.....++|||||+|.+.++|++|+..|++..|.|+.|+|+++.++..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 34679999999999999999999999999877722122589999999999999999999999999999999999987664
No 127
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.5e-14 Score=113.90 Aligned_cols=78 Identities=6% Similarity=0.190 Sum_probs=70.5
Q ss_pred ceEEEE--cCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCcee-----CCeEEEEEec
Q psy10125 38 VIYVSI--VLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREI-----NGRRVRVEMS 110 (312)
Q Consensus 38 ~~~l~V--~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i-----~g~~i~V~~a 110 (312)
..+||| +||++.+|+++|+++|++||.|..+.|.. .+|||||+|.+.++|++|++.||+..+ .++.|.|.++
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 568999 77999999999999999999999998875 489999999999999999999999998 6889999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
+..+-.
T Consensus 104 ~~~p~~ 109 (114)
T 2cq2_A 104 EKVQWS 109 (114)
T ss_dssp SCCCCS
T ss_pred ccCccc
Confidence 876543
No 128
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.8e-14 Score=108.83 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=70.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
...+|||+|||+.+|+++|+++|++| .|..+.+. .++|||||+|.+.++|++|+..|++..+.|+.|+|+++....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45789999999999999999999999 99999886 568999999999999999999999999999999999987644
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.4e-15 Score=110.64 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=67.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
..++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..||+..+.++.|+|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4579999999999999999999999999999999865 4899999999999999999999999999998876654
No 130
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=108.18 Aligned_cols=69 Identities=26% Similarity=0.421 Sum_probs=63.7
Q ss_pred eEEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCe-EEEE
Q psy10125 39 IYVSIVLCSTSS------TKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGR-RVRV 107 (312)
Q Consensus 39 ~~l~V~nLp~~~------teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~-~i~V 107 (312)
++|||+|||+.+ |+++|+++|++||.|..+.|... ++|||||+|.+.++|++|+..||+..+.|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 78999999999999999998742 689999999999999999999999999998 8766
No 131
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.52 E-value=1e-14 Score=119.40 Aligned_cols=81 Identities=30% Similarity=0.583 Sum_probs=74.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
...++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..|++..|.++.|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34678999999999999999999999999999999754 5899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
++....
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876653
No 132
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1e-14 Score=106.91 Aligned_cols=71 Identities=24% Similarity=0.440 Sum_probs=66.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
++|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+..++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999865 47999999999999999999999 9999999999876
No 133
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=5.2e-14 Score=113.72 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=70.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcE-EEEEeCCHHHHHHHHHhCCCceeCC--eEEEEEecCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGF-GFVEFEDRRDAEDAVRGFDGREING--RRVRVEMSNP 112 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~-afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~a~~ 112 (312)
.....|||+||++.+|+++|+++|++||.|.+|.|... .|| |||+|.+.++|..|++.||+..|.+ ..|+|+++++
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 34457899999999999999999999999999998765 596 9999999999999999999999987 5899999987
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
+..
T Consensus 102 ~~l 104 (124)
T 2e5i_A 102 TRL 104 (124)
T ss_dssp SCC
T ss_pred Ccc
Confidence 653
No 134
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=4.4e-14 Score=119.25 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCcEEEEEeCCHHHHHHHHHhCCCceeCC--eEEEEEecC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-PPGFGFVEFEDRRDAEDAVRGFDGREING--RRVRVEMSN 111 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-~kG~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~a~ 111 (312)
+....+|||+||++.+|+++|+++|++||.|.+|.|..+ +++||||+|.+.++|++|++.|++..|.+ +.|+|++++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 445578999999999999999999999999999998754 57899999999999999999999999965 999999999
Q ss_pred CCCC
Q psy10125 112 PQKM 115 (312)
Q Consensus 112 ~~~~ 115 (312)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8653
No 135
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.3e-14 Score=109.72 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=70.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN-VWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~-v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+++|+++|+++|++||.|.. +.|+.+ ++|||||+|.+.++|++||.. ++..|.++.|.|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 44689999999999999999999999999987 777654 589999999999999999987 999999999999988
Q ss_pred CCCCC
Q psy10125 111 NPQKM 115 (312)
Q Consensus 111 ~~~~~ 115 (312)
..+..
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76543
No 136
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=4.7e-14 Score=123.47 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=73.3
Q ss_pred CceEEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 37 LVIYVSIVLCS-TSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 37 ~~~~l~V~nLp-~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
...+|||+||| +.+|+++|+++|++||.|.+++|+.+.+|||||+|.+.++|++||+.||+..+.|+.|+|.+++...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 45799999999 8999999999999999999999998889999999999999999999999999999999999987543
No 137
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=6.6e-15 Score=111.36 Aligned_cols=76 Identities=32% Similarity=0.563 Sum_probs=67.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
++|||+|||+++|+++|+++|++||.|..+.+..+ ++|||||+|.+.+ |++|+..|++..+.|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999854 5899999999999 99999999999999999999999876
Q ss_pred CC
Q psy10125 114 KM 115 (312)
Q Consensus 114 ~~ 115 (312)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 138
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.8e-14 Score=112.39 Aligned_cols=79 Identities=22% Similarity=0.202 Sum_probs=71.5
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPI-KNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I-~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.....+|||+|||+++|+++|+++|++||.| ..|.|+.+ ++|||||+|.+.++|++||.. ++..|.++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456899999999999999999999999999 78888764 689999999999999999986 99999999999999
Q ss_pred cCCCC
Q psy10125 110 SNPQK 114 (312)
Q Consensus 110 a~~~~ 114 (312)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 139
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=2.8e-14 Score=114.06 Aligned_cols=78 Identities=22% Similarity=0.162 Sum_probs=70.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGP---IKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~---I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
.....+|||+|||+++|+++|+++|++||. |..|.|+.+ ++|||||+|.+.++|++||+ +++..|.++.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345689999999999999999999999999 888988865 57899999999999999998 9999999999999
Q ss_pred EecCCC
Q psy10125 108 EMSNPQ 113 (312)
Q Consensus 108 ~~a~~~ 113 (312)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=9.9e-15 Score=118.62 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=72.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeE--EEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCc----eeCCeE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN--VWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGR----EINGRR 104 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~--v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~----~i~g~~ 104 (312)
...++|||+|||+++|+++|+++|++||.|.. |.|+++ ++|||||+|.+. +|.+|+..|++. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44679999999999999999999999999966 888865 589999999999 999999999999 999999
Q ss_pred EEEEecCCCCCC
Q psy10125 105 VRVEMSNPQKMR 116 (312)
Q Consensus 105 i~V~~a~~~~~~ 116 (312)
|+|+++++..+.
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 141
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=6.9e-15 Score=121.29 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=69.9
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
......+|||+|||+++|+++|+++|++|| |..|.|+.+ ++|||||+|.+.++|++|| .+++..|.++.|+|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 344567999999999999999999999999 778888764 6899999999999999999 7899999999999998
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 877654
No 142
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=9.8e-15 Score=112.90 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=68.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee-----CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR-----NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~-----~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+++|+++|+++|++||.|.. .++. .++|||||+|.+.++|++|++ |++..|.++.|+|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34679999999999999999999999998866 3322 368999999999999999998 9999999999999999
Q ss_pred CCCCC
Q psy10125 111 NPQKM 115 (312)
Q Consensus 111 ~~~~~ 115 (312)
+++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 143
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=9.4e-14 Score=104.08 Aligned_cols=71 Identities=23% Similarity=0.401 Sum_probs=66.1
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEE
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYY----G-------PIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~----G-------~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i 105 (312)
...+|||+|||+++|+++|+++|++| | .|..+.+..+ +|||||+|.+.++|++|+ .|++..+.|+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 45799999999999999999999999 8 8999988765 899999999999999999 999999999999
Q ss_pred EEEe
Q psy10125 106 RVEM 109 (312)
Q Consensus 106 ~V~~ 109 (312)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9873
No 144
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.6e-14 Score=110.96 Aligned_cols=78 Identities=19% Similarity=0.355 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCcee--------CCe
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREI--------NGR 103 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i--------~g~ 103 (312)
...++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+..||+..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45689999999999999999999999999999999875 478999999999999999999999999 577
Q ss_pred EEEEEecCCC
Q psy10125 104 RVRVEMSNPQ 113 (312)
Q Consensus 104 ~i~V~~a~~~ 113 (312)
.|.|.++.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 7999998854
No 145
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=3.8e-14 Score=116.42 Aligned_cols=78 Identities=21% Similarity=0.140 Sum_probs=70.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGP---IKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~---I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
.....+|||+|||+++|+++|+++|++||. |..|.|+.+ ++|||||+|.+.++|++||+ +++..|.++.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345689999999999999999999999999 888988865 57899999999999999998 9999999999999
Q ss_pred EecCCC
Q psy10125 108 EMSNPQ 113 (312)
Q Consensus 108 ~~a~~~ 113 (312)
..+.++
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 988643
No 146
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=108.60 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=67.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
..+|||+|||+++|++||+++|++| .|..|.|+.+ ++|||||+|.+.++|++|| .+++..|+++.|.|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4689999999999999999999999 8999999864 6899999999999999999 69999999999999887653
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.2e-14 Score=107.25 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEE-EeeC-CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVW-VARN-PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~-i~~~-~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
....+|||+|||+.+|+++|+++|++||.|..++ |+.+ ..+.|||+|.+.++|++|+..|++..|.|+.|+|+++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3457899999999999999999999999999994 6655 3566999999999999999999999999999999999876
Q ss_pred C
Q psy10125 114 K 114 (312)
Q Consensus 114 ~ 114 (312)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 148
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=1.2e-13 Score=111.10 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=72.3
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+...++|||+|| .+|+++|+++|++||.|..+.|. .++|||||+|.+.++|++|+..|++..|.|+.|+|+++++
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 34456789999996 69999999999999999999887 5689999999999999999999999999999999999988
Q ss_pred CCCC
Q psy10125 113 QKMR 116 (312)
Q Consensus 113 ~~~~ 116 (312)
+...
T Consensus 111 ~~~~ 114 (121)
T 2bz2_A 111 QPML 114 (121)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 7643
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=9.3e-14 Score=114.28 Aligned_cols=80 Identities=13% Similarity=0.246 Sum_probs=70.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEee--CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKN--------VWVAR--NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~--------v~i~~--~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i 105 (312)
...++|||+|||+.+|+++|+.+|++||.|.. +.+.. .++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 45689999999999999999999999999865 33332 368999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q psy10125 106 RVEMSNPQKM 115 (312)
Q Consensus 106 ~V~~a~~~~~ 115 (312)
.|+++++...
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987554
No 150
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.47 E-value=3.2e-14 Score=103.75 Aligned_cols=70 Identities=13% Similarity=0.323 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 40 YVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 40 ~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
+|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+.. ++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999998754 589999999999999999974 889999999998864
No 151
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.46 E-value=1.6e-13 Score=117.51 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...++|||+|||+.+|+++|+++|++||.|..|.|..+ ++|||||+|.+.++|++|++.|++..|.++.|+|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34689999999999999999999999999999999864 58999999999999999999999999999999999997
Q ss_pred CCC
Q psy10125 112 PQK 114 (312)
Q Consensus 112 ~~~ 114 (312)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 152
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.5e-14 Score=114.22 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=67.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee-C----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR-N----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~-~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+++|+++|+++|++||.|..+.++. + ++|||||+|.+.++|++||. |++..|.++.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4568999999999999999999999999997633332 2 57999999999999999998 9999999999999998
Q ss_pred CCC
Q psy10125 111 NPQ 113 (312)
Q Consensus 111 ~~~ 113 (312)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 153
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=103.99 Aligned_cols=73 Identities=11% Similarity=0.216 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCCCCHHH----HHHHhhcC-CCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKED----IEDAFSYY-GPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teed----L~~~F~~~-G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
.+.|||+|||+.+++++ |+++|++| |+|.+| . .|+|||.|.+.++|++|++.|++..+.|+.|+|++++.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 34599999999999988 55899999 599887 2 49999999999999999999999999999999999998
Q ss_pred CCC
Q psy10125 113 QKM 115 (312)
Q Consensus 113 ~~~ 115 (312)
+..
T Consensus 84 ~sd 86 (96)
T 2diu_A 84 NRE 86 (96)
T ss_dssp SCC
T ss_pred Ccc
Confidence 764
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.44 E-value=6.2e-14 Score=109.88 Aligned_cols=77 Identities=22% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGP---IKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~---I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
....+|||+|||+++|+++|+++|+.||. |..+.|+.+ ++|||||+|.+.++|++||. +++..|.++.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45689999999999999999999999988 888988864 68999999999999999998 99999999999999
Q ss_pred ecCCC
Q psy10125 109 MSNPQ 113 (312)
Q Consensus 109 ~a~~~ 113 (312)
++.++
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 88754
No 155
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=3.9e-13 Score=108.61 Aligned_cols=77 Identities=23% Similarity=0.441 Sum_probs=51.8
Q ss_pred ccccCCCCCCCCcCCCCCCCCCCCCCccccccCcc-cccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCC-Ccccc
Q psy10125 145 KCYECGGRGHYARDCRSRRSGGSGRPELCKINGRR-VRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNP-DDKCY 222 (312)
Q Consensus 145 ~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~-gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~-~~~C~ 222 (312)
.||+|++.||++++||+. .|++||+. ||++++||.. ..+..++..|| .+++|+... ...||
T Consensus 6 ~C~~C~~~GH~~~~Cp~~---------~C~~Cg~~~gH~~~~C~~~-------~~C~~Cg~~GH-~~~~C~~~~~~~~C~ 68 (124)
T 2lli_A 6 KCNNCSQRGHLKKDCPHI---------ICSYCGATDDHYSRHCPKA-------IQCSKCDEVGH-YRSQCPHKWKKVQCT 68 (124)
T ss_dssp CCSSCSSSSCCTTTTTSC---------CCTTTCCTTTCCTTTGGGS-------SCSSSSSCSSS-STTTSCCCCCCCSSS
T ss_pred cccCCCCCCcCcccCcCC---------cCcCCCCcCCccCcccCCc-------ccccccCCCCC-ccccCcCcccCccCC
Confidence 488888888888888763 47777776 7777777753 34556655544 555666542 35677
Q ss_pred ccCCcCccccCCCCCC
Q psy10125 223 ECGGRGHYARDCRSRR 238 (312)
Q Consensus 223 ~Cg~~GH~ar~Cp~~~ 238 (312)
+|++.||+|+|||+..
T Consensus 69 ~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 69 LCKSKKHSKERCPSIW 84 (124)
T ss_dssp SSCSSCCCTTTCCCST
T ss_pred CCCcCCcchhhCCCcc
Confidence 7777777777777653
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.44 E-value=2.2e-13 Score=119.28 Aligned_cols=77 Identities=31% Similarity=0.434 Sum_probs=72.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
..+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.||+..|.|+.|.|++++++.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 468999999999999999999999999999999865 57999999999999999999999999999999999998754
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.43 E-value=4.5e-13 Score=117.34 Aligned_cols=78 Identities=26% Similarity=0.376 Sum_probs=71.6
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
..++|||+|||+++|+++|+++|++||.|.+|.|+++ ++|||||+|.+.++|++|+..+++..+.++.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 3579999999999999999999999999999999875 47999999999999999999999999999999999887
Q ss_pred CCC
Q psy10125 112 PQK 114 (312)
Q Consensus 112 ~~~ 114 (312)
...
T Consensus 94 ~~~ 96 (213)
T 4f02_A 94 RDP 96 (213)
T ss_dssp CCT
T ss_pred ccc
Confidence 644
No 158
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=5.7e-13 Score=110.60 Aligned_cols=77 Identities=23% Similarity=0.494 Sum_probs=71.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
+++|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.++.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 478999999999999999999999999999999875 359999999999999999999999999999999999876
Q ss_pred CC
Q psy10125 113 QK 114 (312)
Q Consensus 113 ~~ 114 (312)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.42 E-value=1.9e-13 Score=105.75 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=69.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..++|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+. ++..+.|+.|.|..+.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4579999999999999999999999999999999875 47999999999999999997 89999999999998876
Q ss_pred CC
Q psy10125 113 QK 114 (312)
Q Consensus 113 ~~ 114 (312)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.42 E-value=6.5e-13 Score=110.67 Aligned_cols=77 Identities=21% Similarity=0.458 Sum_probs=71.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
.++|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.++.|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 578999999999999999999999999999998764 469999999999999999999999999999999999886
Q ss_pred CC
Q psy10125 113 QK 114 (312)
Q Consensus 113 ~~ 114 (312)
..
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 161
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=110.23 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPI----KNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I----~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
....+|||+|||+++|+++|+++|++||.| ..|.|+.+ ++|||||+|.+.++|++||.. ++..|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 57888764 579999999999999999985 899999999999
Q ss_pred EecCC
Q psy10125 108 EMSNP 112 (312)
Q Consensus 108 ~~a~~ 112 (312)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88764
No 162
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=8.7e-13 Score=109.37 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=71.7
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.....+|||+|||+.+|+++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 345679999999999999999999999999999999865 478999999999999999999999999999999999
Q ss_pred cCC
Q psy10125 110 SNP 112 (312)
Q Consensus 110 a~~ 112 (312)
++.
T Consensus 164 a~~ 166 (166)
T 3md3_A 164 AAK 166 (166)
T ss_dssp SCC
T ss_pred cCC
Confidence 863
No 163
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.41 E-value=3.9e-13 Score=108.94 Aligned_cols=77 Identities=25% Similarity=0.209 Sum_probs=67.6
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCee--EEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIK--NVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~--~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
.+....+|||+|||+++|+++|+++|++| .|. .|.|+.+ ++|||||+|.+.++|++||.. ++..|.++.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34556899999999999999999999999 677 8888764 689999999999999999975 679999999999
Q ss_pred EecCC
Q psy10125 108 EMSNP 112 (312)
Q Consensus 108 ~~a~~ 112 (312)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=9.1e-13 Score=112.83 Aligned_cols=80 Identities=15% Similarity=0.346 Sum_probs=74.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-----CcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNP-----PGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~-----kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||+.+|+++|+++|++||.|..+.+..+. +|||||+|.+.++|.+|+..|++..|.|+.|.|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999998763 799999999999999999999999999999999999
Q ss_pred CCCCC
Q psy10125 111 NPQKM 115 (312)
Q Consensus 111 ~~~~~ 115 (312)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88664
No 165
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.4e-13 Score=103.06 Aligned_cols=64 Identities=27% Similarity=0.551 Sum_probs=43.0
Q ss_pred CCccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCCCcccc
Q psy10125 143 DDKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCY 222 (312)
Q Consensus 143 ~~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~~~~C~ 222 (312)
...||+|++.||++++||+.. .||+|+..+|++++|+.+. ....||
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~--------rcY~c~~~gh~~~~c~~p~--------------------------~~~~CY 50 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIW--------RAYILVDDNEKAKPKVLPF--------------------------HTIYCY 50 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGT--------CCCCBC---------------------------------------CCCBCS
T ss_pred cCCCCCCCCCCCccccCCCcc--------cccccccCCcccccccCCC--------------------------CCCeec
Confidence 356999999999999999864 4999999999998887531 246799
Q ss_pred ccCCcCccccCCCCCCCC
Q psy10125 223 ECGGRGHYARDCRSRRSG 240 (312)
Q Consensus 223 ~Cg~~GH~ar~Cp~~~~~ 240 (312)
+||+.|||++|||+++..
T Consensus 51 nCG~~GH~~rdC~~~r~s 68 (83)
T 3nyb_B 51 NCGGKGHFGDDCKEKRSS 68 (83)
T ss_dssp SSSCBSSCGGGCSSCCSC
T ss_pred ccCCCCcCcccCCccccC
Confidence 999999999999997743
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.40 E-value=9.8e-13 Score=114.19 Aligned_cols=81 Identities=25% Similarity=0.463 Sum_probs=74.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
....+|||+|||..+|+++|+++|++||.|..+.|..+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45679999999999999999999999999999999875 3799999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10125 111 NPQKMR 116 (312)
Q Consensus 111 ~~~~~~ 116 (312)
.+.+..
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 887643
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.40 E-value=1.1e-12 Score=112.24 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=68.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
...+|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 3579999999999999999999999999999999865 479999999999999999976 7899999999999998
Q ss_pred CCCCC
Q psy10125 112 PQKMR 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 87654
No 168
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=6e-13 Score=107.42 Aligned_cols=75 Identities=21% Similarity=0.261 Sum_probs=66.2
Q ss_pred ceEEEEcCC----CCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCC----HHH----HHHHHH--hCCCc
Q psy10125 38 VIYVSIVLC----STSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFED----RRD----AEDAVR--GFDGR 98 (312)
Q Consensus 38 ~~~l~V~nL----p~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~----~~~----A~~Ai~--~l~g~ 98 (312)
.++|||+|| |+.+++++|+.+|++||+|.++.++.| ++||+||+|.+ +++ |.+|+. .+++.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 999999999999999999999999987 58999999996 333 788888 78999
Q ss_pred eeCCeEEEEEecCC
Q psy10125 99 EINGRRVRVEMSNP 112 (312)
Q Consensus 99 ~i~g~~i~V~~a~~ 112 (312)
.|+|+.|+|++.+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998654
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=9.5e-13 Score=109.15 Aligned_cols=76 Identities=20% Similarity=0.362 Sum_probs=70.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
.+|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.++.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999865 47899999999999999999999999999999999987654
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=9e-13 Score=116.66 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=74.9
Q ss_pred CCCceEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCC
Q psy10125 35 YMLVIYVSIVLCST-SSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 35 ~~~~~~l~V~nLp~-~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 113 (312)
.....+|||+|||+ .+|+++|+++|++||.|..+.|+.+.+|||||+|.+.++|++|++.|++..+.++.|.|+++...
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 34568999999999 99999999999999999999999888999999999999999999999999999999999998865
Q ss_pred C
Q psy10125 114 K 114 (312)
Q Consensus 114 ~ 114 (312)
.
T Consensus 111 ~ 111 (229)
T 2adc_A 111 N 111 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 171
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=7.5e-13 Score=110.32 Aligned_cols=75 Identities=16% Similarity=0.344 Sum_probs=70.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+|||+|||+.+|+++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 579999999999999999999999999999998764 57999999999999999997 899999999999999987
Q ss_pred C
Q psy10125 113 Q 113 (312)
Q Consensus 113 ~ 113 (312)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.37 E-value=1.9e-12 Score=110.60 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=70.4
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
+...++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+.. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345689999999999999999999999999999999875 478999999999999999975 88999999999999
Q ss_pred cCCCCC
Q psy10125 110 SNPQKM 115 (312)
Q Consensus 110 a~~~~~ 115 (312)
+.+...
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 876543
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.2e-12 Score=109.48 Aligned_cols=73 Identities=16% Similarity=0.419 Sum_probs=69.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-----CcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEec
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNP-----PGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~-----kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 110 (312)
..+|||+|||+.+|+++|+++|++||.|..+.+..+. +|||||+|.+.++|.+|+..|++..+.|+.|.|+++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 5789999999999999999999999999999998763 799999999999999999999999999999999986
No 174
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.37 E-value=6.8e-13 Score=114.16 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=73.6
Q ss_pred CceEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 37 LVIYVSIVLCST-SSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 37 ~~~~l~V~nLp~-~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
.+++|||+|||+ .+|+++|+++|++||.|..+.++.+.+|||||+|.+.++|++|+..|++..+.|+.|.|.++....
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 357999999999 999999999999999999999998889999999999999999999999999999999999988754
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.37 E-value=2e-12 Score=117.42 Aligned_cols=76 Identities=14% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeC-CeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREIN-GRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~a~ 111 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+.+|||||+|.+.++|.+|+..|++..|. |+.|+|++++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 346889999999999999999999999999999999877799999999999999999999999999 9999999986
No 176
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=6e-13 Score=119.09 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCCceEEEEcCCCCCC---------CHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCcee-----
Q psy10125 35 YMLVIYVSIVLCSTSS---------TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREI----- 100 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~---------teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i----- 100 (312)
....++|||+||+..+ |+++|+.+|++||.|..|.|+. ++|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 3457899999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred -------CCeEEEEEecCCCCC
Q psy10125 101 -------NGRRVRVEMSNPQKM 115 (312)
Q Consensus 101 -------~g~~i~V~~a~~~~~ 115 (312)
.++.|.|.++...+.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTGGGGGGSCCCEEEECC----
T ss_pred ccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=1.4e-12 Score=109.78 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=69.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQK 114 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 114 (312)
...+|||+|||+.+|+++|+++|++||.|..+.....++|||||+|.+.++|.+|+..|++..|.|+.|.|+++.+++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 457999999999999999999999999987771112378999999999999999999999999999999999998753
No 178
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=102.59 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=62.4
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee--------CCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR--------NPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~--------~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 107 (312)
...++|||+|||+++|+++|+++|++||.|. +.++. .++|||||+|.+.++|++||+.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3467899999999999999999999999999 66654 248999999999999999999883 477777777
Q ss_pred EecCC
Q psy10125 108 EMSNP 112 (312)
Q Consensus 108 ~~a~~ 112 (312)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65443
No 179
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=6.7e-12 Score=99.05 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=71.7
Q ss_pred hcCCCceEEEEcCCCCCCC-----------HHHHHHHhhcCCCeeEEEEee-CCCcEEEEEeCCHHHHHHHHHhCCCcee
Q psy10125 33 ARYMLVIYVSIVLCSTSST-----------KEDIEDAFSYYGPIKNVWVAR-NPPGFGFVEFEDRRDAEDAVRGFDGREI 100 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~t-----------eedL~~~F~~~G~I~~v~i~~-~~kG~afV~f~~~~~A~~Ai~~l~g~~i 100 (312)
.++..+.+|+|.||..... +++|+++|++||.|..+.|.. .++|||||+|.+.++|++|+..||+..+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3556688999999954332 589999999999999997642 3689999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCC
Q psy10125 101 NGRRVRVEMSNPQKMR 116 (312)
Q Consensus 101 ~g~~i~V~~a~~~~~~ 116 (312)
.++.|+|+++.++...
T Consensus 90 ~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 90 GGRQITAQAWDGTTDY 105 (112)
T ss_dssp TTEECEEEECCSCCCS
T ss_pred CCcEEEEEEeCCCCCc
Confidence 9999999999876543
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.35 E-value=1.6e-12 Score=112.78 Aligned_cols=81 Identities=23% Similarity=0.373 Sum_probs=71.9
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
.....++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|++.|++..|.++.|.|.
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 3345679999999999999999999999999999999764 58999999999999999999999999999999998
Q ss_pred ecCCCC
Q psy10125 109 MSNPQK 114 (312)
Q Consensus 109 ~a~~~~ 114 (312)
++....
T Consensus 104 ~~~~~~ 109 (216)
T 2qfj_A 104 RPSNIG 109 (216)
T ss_dssp CCSCCG
T ss_pred cCCCcc
Confidence 776543
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=3.6e-12 Score=115.69 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=72.2
Q ss_pred CCceEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEeeC--CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIE----DAFSYYGPIKNVWVARN--PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~----~~F~~~G~I~~v~i~~~--~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
....+|||+|||+++|+++|+ ++|++||.|..|.+.+. ++|||||+|.+.++|++|++.|++..|.++.|+|++
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 446899999999999999976 89999999999998753 689999999999999999999999999999999999
Q ss_pred cCCCC
Q psy10125 110 SNPQK 114 (312)
Q Consensus 110 a~~~~ 114 (312)
++...
T Consensus 87 a~~~~ 91 (282)
T 3pgw_A 87 AKTDS 91 (282)
T ss_pred eccCc
Confidence 97654
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.32 E-value=2.2e-12 Score=110.92 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=72.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeC-CeEEEEEecCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYG-PIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREIN-GRRVRVEMSNPQ 113 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G-~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~a~~~ 113 (312)
...+|||+|||+.+|+++|+++|++|| .|..+.++.+.+|+|||+|.+.++|.+|+..|++..+. ++.|+|.+++++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 368999999999999999999999999 99999997777999999999999999999999999999 999999998764
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.32 E-value=1e-11 Score=97.30 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=68.0
Q ss_pred CCceEEEEcCCCC-----CCCHHHHHHHhhcCCCeeEEEEeeC------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeE
Q psy10125 36 MLVIYVSIVLCST-----SSTKEDIEDAFSYYGPIKNVWVARN------PPGFGFVEFEDRRDAEDAVRGFDGREINGRR 104 (312)
Q Consensus 36 ~~~~~l~V~nLp~-----~~teedL~~~F~~~G~I~~v~i~~~------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 104 (312)
..+.+|+|.||.. ..++++|+++|++||.|.++.|+.+ ++||+||+|.+.++|.+|+..||+..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999963 2478999999999999999999863 4899999999999999999999999999999
Q ss_pred EEEEecCC
Q psy10125 105 VRVEMSNP 112 (312)
Q Consensus 105 i~V~~a~~ 112 (312)
|.|+++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.32 E-value=4e-12 Score=112.45 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=72.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeC-CeEEEEEecCCC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYG-PIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREIN-GRRVRVEMSNPQ 113 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G-~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~a~~~ 113 (312)
...+|||+|||+.+|+++|+++|++|| .|..+.++.+.+|||||+|.+.++|.+|+..|++..+. ++.|+|.+++++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 368999999999999999999999999 99999997667999999999999999999999999999 999999998864
No 185
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=95.63 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=40.1
Q ss_pred CCCCCcCCCCCCCCC----CCCCccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCCCccccccCCc
Q psy10125 152 RGHYARDCRSRRSGG----SGRPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGR 227 (312)
Q Consensus 152 ~Gh~a~~Cp~~~~~~----~g~~~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~~~~C~~Cg~~ 227 (312)
.||+++||++..... ......||+||+.||++++|+... ....||+|+++
T Consensus 2 ~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~~--------------------------~~~~C~~Cg~~ 55 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPP--------------------------QPKKCHFCQSI 55 (74)
T ss_dssp ----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSCC--------------------------CCCCCTTTCCT
T ss_pred CccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCCC--------------------------CCCccCCcCCc
Confidence 589999999875442 234468999999999999998632 12569999999
Q ss_pred CccccCCCCCCC
Q psy10125 228 GHYARDCRSRRS 239 (312)
Q Consensus 228 GH~ar~Cp~~~~ 239 (312)
||+|+|||+...
T Consensus 56 GH~ar~Cp~~~~ 67 (74)
T 2li8_A 56 SHMVASCPLKAQ 67 (74)
T ss_dssp TSCGGGCTTGGG
T ss_pred CCccCcCcCCcC
Confidence 999999998653
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.31 E-value=6.3e-12 Score=108.93 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=67.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+|||+|||+.+|+++|+++|++||.|..|.|.++ ++|||||+|.+.++|++|+..++ ..+.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 478999999999999999999999999999999864 57999999999999999997664 589999999998765
No 187
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=4.2e-12 Score=106.28 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=68.7
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeC---CeEEEEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREIN---GRRVRVE 108 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~---g~~i~V~ 108 (312)
....+|||+|||+.+|+++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|+..||+..+. ++.|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 35679999999999999999999999999999999875 4789999999999999999999998776 3899999
Q ss_pred ecC
Q psy10125 109 MSN 111 (312)
Q Consensus 109 ~a~ 111 (312)
++.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 188
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.31 E-value=5.6e-12 Score=104.91 Aligned_cols=75 Identities=19% Similarity=0.401 Sum_probs=68.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-----CcEEEEEeCCHHHHHHHHHhCCCceeCC--eEEEEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNP-----PGFGFVEFEDRRDAEDAVRGFDGREING--RRVRVE 108 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~-----kG~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~ 108 (312)
....+|||+|||..+|+++|+++|++||.|..+.+..+. +|||||+|.+.++|.+|+..|++..+.| +.|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 346799999999999999999999999999999998753 6899999999999999999999999987 899998
Q ss_pred ec
Q psy10125 109 MS 110 (312)
Q Consensus 109 ~a 110 (312)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.30 E-value=6.8e-12 Score=113.22 Aligned_cols=78 Identities=29% Similarity=0.478 Sum_probs=72.3
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
.....++|||+|||+++|+++|+++|++||.|..+.|.++ +|||||+|.+.++|..|+..+++..|.++.|.|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 3455689999999999999999999999999999999754 89999999999999999999999999999999999875
No 190
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.29 E-value=1.2e-11 Score=103.46 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=67.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEE
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYY----G-------PIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~----G-------~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i 105 (312)
...+|||+|||+++|+++|+++|++| | .|..+.+.. ++|||||+|.++++|++|+ .+++..+.|+.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-TTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-CCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 46799999999999999999999999 6 777777764 4899999999999999999 899999999999
Q ss_pred EEEecCCC
Q psy10125 106 RVEMSNPQ 113 (312)
Q Consensus 106 ~V~~a~~~ 113 (312)
.|.++...
T Consensus 81 ~v~~~~~~ 88 (172)
T 2g4b_A 81 KIRRPHDY 88 (172)
T ss_dssp EEECCSSC
T ss_pred eecCCccc
Confidence 99986654
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.29 E-value=7.6e-12 Score=104.14 Aligned_cols=75 Identities=19% Similarity=0.428 Sum_probs=67.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
.+++|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4579999999999999999999999999999999865 579999999999999999985 568999999988876
Q ss_pred CC
Q psy10125 112 PQ 113 (312)
Q Consensus 112 ~~ 113 (312)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 192
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.28 E-value=8.1e-12 Score=103.57 Aligned_cols=74 Identities=26% Similarity=0.524 Sum_probs=67.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeE--EEEEe
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRR--VRVEM 109 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~--i~V~~ 109 (312)
...+|||+|||+.+|+++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|+..|++..+.|+. |.|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4578999999999999999999999999999999875 3799999999999999999999999999975 77776
Q ss_pred c
Q psy10125 110 S 110 (312)
Q Consensus 110 a 110 (312)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.28 E-value=6.2e-12 Score=105.20 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=67.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-------CCcEEEEEeCCHHHHHHHHHhCCCceeC---CeEEE
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-------PPGFGFVEFEDRRDAEDAVRGFDGREIN---GRRVR 106 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-------~kG~afV~f~~~~~A~~Ai~~l~g~~i~---g~~i~ 106 (312)
+.++|||+|||+++|+++|+++|++||.|..+.|+++ ++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3579999999999999999999999999999999854 4689999999999999999999997775 56677
Q ss_pred EEecCCCC
Q psy10125 107 VEMSNPQK 114 (312)
Q Consensus 107 V~~a~~~~ 114 (312)
+..+....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 77665443
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.26 E-value=2e-11 Score=104.44 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=67.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEE
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYY----G-------PIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~----G-------~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i 105 (312)
.+.+|||+|||+++|+++|+++|++| | .|..+.+. .++|||||+|.+.++|++|+ .|++..|.|+.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 35799999999999999999999999 5 66666665 35899999999999999999 899999999999
Q ss_pred EEEecCCCC
Q psy10125 106 RVEMSNPQK 114 (312)
Q Consensus 106 ~V~~a~~~~ 114 (312)
.|.++....
T Consensus 81 ~v~~~~~~~ 89 (198)
T 2yh0_A 81 KIRRPHDYQ 89 (198)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999887654
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.25 E-value=2e-11 Score=111.34 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=72.1
Q ss_pred CCceEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeeC------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 36 MLVIYVSIVLCSTS-STKEDIEDAFSYYGPIKNVWVARN------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 36 ~~~~~l~V~nLp~~-~teedL~~~F~~~G~I~~v~i~~~------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
....+|||+|||+. +|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|.+|+ .|++..|.|+.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45689999999999 999999999999999999999754 4799999999999999999 999999999999999
Q ss_pred ecCCCC
Q psy10125 109 MSNPQK 114 (312)
Q Consensus 109 ~a~~~~ 114 (312)
++.+++
T Consensus 287 ~a~~k~ 292 (292)
T 2ghp_A 287 LADKKP 292 (292)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998764
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.24 E-value=2.3e-11 Score=110.48 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=74.5
Q ss_pred cCCCceEEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 34 RYMLVIYVSIVLCSTSS-TKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~-teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
......+|||+|||+.+ |+++|+++|++||.|..+.|..+ ++|+|||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 33456899999999995 99999999999999999998875 57899999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy10125 109 MSNPQKM 115 (312)
Q Consensus 109 ~a~~~~~ 115 (312)
++.++..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987654
No 197
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.4e-11 Score=92.87 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCCCCCC
Q psy10125 48 TSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKMR 116 (312)
Q Consensus 48 ~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~~~ 116 (312)
..+|+++|+++|++||.|..|.|+..++|||||+|.+.++|+.|+..+++ +.++.|+|+++++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 56899999999999999999999877899999999999999999988544 67899999999877643
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.22 E-value=8.6e-12 Score=104.87 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=68.0
Q ss_pred cCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe----eCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 34 RYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVA----RNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 34 ~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~----~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
......+|||+|||+++|+++|+++|++||.+..+.+. ..++|||||+|.+.++|++|+ .|++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 34567899999999999999999999999876442111 237899999999999999999 5999999999999999
Q ss_pred cCCCC
Q psy10125 110 SNPQK 114 (312)
Q Consensus 110 a~~~~ 114 (312)
+.+..
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 88754
No 199
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.21 E-value=7.9e-13 Score=109.88 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=18.3
Q ss_pred ccccccCCcCccccCCCCCCCC
Q psy10125 219 DKCYECGGRGHYARDCRSRRSG 240 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~~~~~ 240 (312)
..||+|++.||+++|||+....
T Consensus 120 ~~C~~Cg~~GH~~r~Cp~~~~~ 141 (148)
T 3ts2_A 120 KKCHFCQSINHMVASCPLKAQQ 141 (148)
T ss_dssp CCCTTTCCSSCCGGGCTTTTC-
T ss_pred CcccccCCcCCEeccCcCCCCC
Confidence 4599999999999999986543
No 200
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.21 E-value=4.7e-11 Score=108.37 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=69.3
Q ss_pred CCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 35 YMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 35 ~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
...+++|||+|||+++|+++|+++|++|| |..+.+. .++|||||+|.+.++|++|+..|++..+.++.|.|+++..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 94 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD-KYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT 94 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe-cCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC
Confidence 34568999999999999999999999999 9888884 5689999999999999999999999999999999998654
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.20 E-value=4.7e-11 Score=108.83 Aligned_cols=79 Identities=20% Similarity=0.171 Sum_probs=68.4
Q ss_pred hcCCCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
.+....++|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++|+ .+++..+.++.|.|.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEE
Confidence 45566789999999999999999999999999999999875 5799999999999999999 4999999999999998
Q ss_pred cCC
Q psy10125 110 SNP 112 (312)
Q Consensus 110 a~~ 112 (312)
+..
T Consensus 115 ~~~ 117 (292)
T 2ghp_A 115 LTE 117 (292)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.18 E-value=3e-11 Score=105.52 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=64.3
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCe--eEEEEeeC---CCcEEEEEeCCHHHHHHHHHhCCCceeCCe----EEEE
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPI--KNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGR----RVRV 107 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I--~~v~i~~~---~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~----~i~V 107 (312)
...+|||+|||+++|+++|+++|++||.| ..+.+..+ ++|+|||+|.+.++|.+||..||+..|.+. .+.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 35689999999999999999999999999 88888764 469999999999999999999999999876 3555
Q ss_pred Ee
Q psy10125 108 EM 109 (312)
Q Consensus 108 ~~ 109 (312)
.+
T Consensus 202 k~ 203 (205)
T 3tyt_A 202 KL 203 (205)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.14 E-value=1.2e-10 Score=91.16 Aligned_cols=76 Identities=28% Similarity=0.413 Sum_probs=65.0
Q ss_pred CceEEEEcCC--CCCC--------CHHHHHHHhhcCCCeeEEEEeeC-------CCcEEEEEeCCHHHHHHHHHhCCCce
Q psy10125 37 LVIYVSIVLC--STSS--------TKEDIEDAFSYYGPIKNVWVARN-------PPGFGFVEFEDRRDAEDAVRGFDGRE 99 (312)
Q Consensus 37 ~~~~l~V~nL--p~~~--------teedL~~~F~~~G~I~~v~i~~~-------~kG~afV~f~~~~~A~~Ai~~l~g~~ 99 (312)
.+..|.|.|+ +..+ .++||+++|++||.|.++.|+++ ++|++||+|.+.++|.+|+..||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567888887 3333 24689999999999999999864 47999999999999999999999999
Q ss_pred eCCeEEEEEecCC
Q psy10125 100 INGRRVRVEMSNP 112 (312)
Q Consensus 100 i~g~~i~V~~a~~ 112 (312)
+.|+.|+|+++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.14 E-value=1e-10 Score=109.91 Aligned_cols=76 Identities=8% Similarity=0.247 Sum_probs=65.3
Q ss_pred CCCceEEEEcC--CCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeC---Ce--EEEE
Q psy10125 35 YMLVIYVSIVL--CSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREIN---GR--RVRV 107 (312)
Q Consensus 35 ~~~~~~l~V~n--Lp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~---g~--~i~V 107 (312)
...+.+|||+| |+..+|+++|+++|++||+|..|.+.. .+|||||+|.+.++|++|++.||+..+. |+ .|.|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 34567999999 588999999999999999999987764 6899999999999999999999998883 34 4677
Q ss_pred EecC
Q psy10125 108 EMSN 111 (312)
Q Consensus 108 ~~a~ 111 (312)
.+..
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 7764
No 205
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.13 E-value=2e-11 Score=95.41 Aligned_cols=68 Identities=25% Similarity=0.424 Sum_probs=60.0
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEE
Q psy10125 43 IVLCSTSSTKEDIEDAF------------SYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106 (312)
Q Consensus 43 V~nLp~~~teedL~~~F------------~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 106 (312)
+.+|++.+|+++|+++| ++||.|.++.|+++ ++|||||+|.+.++|++|+..||+..+.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777887777666 99999999999865 489999999999999999999999999999999
Q ss_pred EEec
Q psy10125 107 VEMS 110 (312)
Q Consensus 107 V~~a 110 (312)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 206
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.08 E-value=2.7e-10 Score=91.09 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=65.6
Q ss_pred CceEEEEcCCCC--C---CCHHHHHHHhhcCCCeeEEEEeeC---------CCcEEEEEeCCHHHHHHHHHhCCCceeCC
Q psy10125 37 LVIYVSIVLCST--S---STKEDIEDAFSYYGPIKNVWVARN---------PPGFGFVEFEDRRDAEDAVRGFDGREING 102 (312)
Q Consensus 37 ~~~~l~V~nLp~--~---~teedL~~~F~~~G~I~~v~i~~~---------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g 102 (312)
.+..|+|.|+-. + -.++||++.|++||.|.+|.|+.+ ++|++||+|.+.++|.+|+..||+..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999832 1 236899999999999999999864 24899999999999999999999999999
Q ss_pred eEEEEEecCC
Q psy10125 103 RRVRVEMSNP 112 (312)
Q Consensus 103 ~~i~V~~a~~ 112 (312)
+.|.|+++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 207
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.06 E-value=2.6e-10 Score=102.73 Aligned_cols=80 Identities=29% Similarity=0.348 Sum_probs=69.9
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC----CCcEEEEEeCCHHHHHHHHHhC-CCceeC---CeEEEE
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN----PPGFGFVEFEDRRDAEDAVRGF-DGREIN---GRRVRV 107 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~----~kG~afV~f~~~~~A~~Ai~~l-~g~~i~---g~~i~V 107 (312)
....+|||+|||+.+|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|.+|+..| ++..+. ++.|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 34679999999999999999999999999999999865 5799999999999999999999 445554 899999
Q ss_pred EecCCCCC
Q psy10125 108 EMSNPQKM 115 (312)
Q Consensus 108 ~~a~~~~~ 115 (312)
.++.+...
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99887543
No 208
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=99.05 E-value=8.6e-11 Score=75.32 Aligned_cols=18 Identities=28% Similarity=0.951 Sum_probs=16.5
Q ss_pred ccccccCCcCccccCCCC
Q psy10125 219 DKCYECGGRGHYARDCRS 236 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~ 236 (312)
..||+|+++||+|++||+
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 469999999999999995
No 209
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=99.05 E-value=1.4e-10 Score=81.85 Aligned_cols=26 Identities=38% Similarity=0.925 Sum_probs=19.0
Q ss_pred CccccccCCcCccccCCCCCCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRRSGGGG 243 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~~~~~~ 243 (312)
...||+|+++||+|+|||+.....+.
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~~~g~ 55 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRDGNQGQ 55 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC-----
T ss_pred CCeeCCCCCCCCCcCCCcCCCcCCCC
Confidence 35699999999999999998766444
No 210
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=3e-10 Score=80.60 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=19.2
Q ss_pred ccccccCCcCccccCCCCCCCCC
Q psy10125 219 DKCYECGGRGHYARDCRSRRSGG 241 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~~~~~~ 241 (312)
..||+|+++||+|+|||+....+
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~~~~~ 52 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLKAQQG 52 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGGGCSC
T ss_pred CccCCcCCcCCccCcCCCccccC
Confidence 45999999999999999876443
No 211
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.04 E-value=8.7e-10 Score=87.53 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=64.5
Q ss_pred CCceEEEEcCCCCCC----------CHHHHHHHhhcCCCeeEEEEeeC-CCcEEEEEeCCHHHHHHHHHhCCCceeCCeE
Q psy10125 36 MLVIYVSIVLCSTSS----------TKEDIEDAFSYYGPIKNVWVARN-PPGFGFVEFEDRRDAEDAVRGFDGREINGRR 104 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~----------teedL~~~F~~~G~I~~v~i~~~-~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 104 (312)
..+..|.|.|+=... .++||++.|++||.|.++.|.++ ++|++||+|.+.++|.+|+..||+..++|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345667787773211 23578999999999999999766 5899999999999999999999999999999
Q ss_pred EEEEecCC
Q psy10125 105 VRVEMSNP 112 (312)
Q Consensus 105 i~V~~a~~ 112 (312)
|.|+++..
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 99999864
No 212
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=99.02 E-value=2.4e-10 Score=77.01 Aligned_cols=20 Identities=35% Similarity=1.017 Sum_probs=17.8
Q ss_pred ccccccCCcCccccCCCCCC
Q psy10125 219 DKCYECGGRGHYARDCRSRR 238 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~~~ 238 (312)
..||+||++||+|++||+..
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSSC
T ss_pred CeeCcCCCcCCccCCCcCCC
Confidence 45999999999999999865
No 213
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.97 E-value=2.6e-10 Score=80.12 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=20.4
Q ss_pred CccccccCCcCccccCCCCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRRSGG 241 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~~~~ 241 (312)
...||+|+++||+|+|||+.....
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~~~ 53 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKTDNQ 53 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTTSSS
T ss_pred CcceeECCCCCCccCcCCCccccC
Confidence 457999999999999999987543
No 214
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.96 E-value=2.8e-10 Score=72.05 Aligned_cols=18 Identities=39% Similarity=1.219 Sum_probs=16.4
Q ss_pred ccccccCCcCccccCCCC
Q psy10125 219 DKCYECGGRGHYARDCRS 236 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~ 236 (312)
..||+|+++||+|++||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 359999999999999985
No 215
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.92 E-value=6.2e-10 Score=76.80 Aligned_cols=20 Identities=40% Similarity=1.147 Sum_probs=17.9
Q ss_pred ccccccCCcCccccCCCCCC
Q psy10125 219 DKCYECGGRGHYARDCRSRR 238 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~~~ 238 (312)
..||+|+++||+|+|||+..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSSC
T ss_pred CEeCCCCCcCCccCCCcCcC
Confidence 46999999999999999865
No 216
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=7.4e-09 Score=82.84 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=66.9
Q ss_pred CCceEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCC-HHHHHHHHHhC--CCceeCCeEEEEEecC
Q psy10125 36 MLVIYVSIVLCSTS-STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFED-RRDAEDAVRGF--DGREINGRRVRVEMSN 111 (312)
Q Consensus 36 ~~~~~l~V~nLp~~-~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~-~~~A~~Ai~~l--~g~~i~g~~i~V~~a~ 111 (312)
....-|||+||++. +++++|+++|++||+|..|++..+. -.|||.|.+ +.+|..|+..+ ++..|.+..+++++..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 44578999999999 9999999999999999999998763 379999999 79999999998 4688899888888775
Q ss_pred C
Q psy10125 112 P 112 (312)
Q Consensus 112 ~ 112 (312)
.
T Consensus 95 G 95 (121)
T 1owx_A 95 G 95 (121)
T ss_dssp H
T ss_pred C
Confidence 3
No 217
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=7.8e-09 Score=78.16 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=62.1
Q ss_pred CceEEEEcCCCC----CCCH----HHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEE
Q psy10125 37 LVIYVSIVLCST----SSTK----EDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108 (312)
Q Consensus 37 ~~~~l~V~nLp~----~~te----edL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 108 (312)
...||+|.-++. +.-. .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|+. |++..+.|+.|+|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 346777776652 2323 578999999999999999854 59999999999999997 99999999999999
Q ss_pred ecCCCCC
Q psy10125 109 MSNPQKM 115 (312)
Q Consensus 109 ~a~~~~~ 115 (312)
++.+...
T Consensus 82 lkt~dW~ 88 (91)
T 2dnr_A 82 LKSPSGP 88 (91)
T ss_dssp ECCCSSC
T ss_pred eCCCCcc
Confidence 9987653
No 218
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=2e-08 Score=80.78 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=50.3
Q ss_pred ccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCCCccccccCCcCccccCCCCCC
Q psy10125 171 ELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSRR 238 (312)
Q Consensus 171 ~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~~~~C~~Cg~~GH~ar~Cp~~~ 238 (312)
..|++|++.||++++||.. .++.+|..++|.+++|+.. ..||+|++.||++++||+..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~~--------~C~~Cg~~~gH~~~~C~~~--~~C~~Cg~~GH~~~~C~~~~ 62 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPHI--------ICSYCGATDDHYSRHCPKA--IQCSKCDEVGHYRSQCPHKW 62 (124)
T ss_dssp SCCSSCSSSSCCTTTTTSC--------CCTTTCCTTTCCTTTGGGS--SCSSSSSCSSSSTTTSCCCC
T ss_pred CcccCCCCCCcCcccCcCC--------cCcCCCCcCCccCcccCCc--ccccccCCCCCccccCcCcc
Confidence 5699999999999999973 5888888866788899863 67999999999999999863
No 219
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=8.9e-08 Score=72.78 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=60.9
Q ss_pred CCceEEEEcCCCCC------CCH---HHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEE
Q psy10125 36 MLVIYVSIVLCSTS------STK---EDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106 (312)
Q Consensus 36 ~~~~~l~V~nLp~~------~te---edL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 106 (312)
+...||+|.-+++. ..+ .+|.+.|++||.|..+++..+ -+||+|.+.++|.+||. |++..+.|+.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 44578999887643 221 468899999999999999955 49999999999999998 999999999999
Q ss_pred EEecCC
Q psy10125 107 VEMSNP 112 (312)
Q Consensus 107 V~~a~~ 112 (312)
|++..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998653
No 220
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.60 E-value=4.7e-08 Score=62.48 Aligned_cols=26 Identities=35% Similarity=0.857 Sum_probs=22.1
Q ss_pred CCccccccCCcCccccCCCCCCCCCC
Q psy10125 217 PDDKCYECGGRGHYARDCRSRRSGGG 242 (312)
Q Consensus 217 ~~~~C~~Cg~~GH~ar~Cp~~~~~~~ 242 (312)
....||+||+.||||+|||++.....
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~~~~~r 34 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKKPRGPR 34 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSCCCTT
T ss_pred CCCeeeECCCCCcchhhCcCCcccCC
Confidence 35779999999999999999886543
No 221
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.58 E-value=5.6e-08 Score=68.34 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=37.9
Q ss_pred CccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcccC
Q psy10125 144 DKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMR 191 (312)
Q Consensus 144 ~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~~ 191 (312)
..||+|++.||++++||...... .....|++||+.||++++||....
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~-~~~~~C~~Cg~~GH~ar~C~~~~~ 51 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSG-NSRERCQLCNGMGHNAKQCRKRDG 51 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSS-CCCSBCTTTCCBSSCGGGCCCCC-
T ss_pred CcccccCCCCeehhhCcCCcCCC-CCCCeeCCCCCCCCCcCCCcCCCc
Confidence 45999999999999999864322 223579999999999999998653
No 222
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.53 E-value=6.3e-08 Score=61.79 Aligned_cols=38 Identities=37% Similarity=0.700 Sum_probs=33.5
Q ss_pred ccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCc
Q psy10125 145 KCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQ 188 (312)
Q Consensus 145 ~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~ 188 (312)
.||+|++.||++++||... ...|++||+.||++++||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~------~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPR------QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCC------CSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCCC------CCccccCCCCCCccCcCcC
Confidence 4999999999999999752 2579999999999999984
No 223
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.50 E-value=4e-08 Score=57.04 Aligned_cols=21 Identities=38% Similarity=1.066 Sum_probs=17.7
Q ss_pred ccccccCCcCccccCCCCCCC
Q psy10125 219 DKCYECGGRGHYARDCRSRRS 239 (312)
Q Consensus 219 ~~C~~Cg~~GH~ar~Cp~~~~ 239 (312)
..||+||++||+|+|||++..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~~ 23 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEXX 23 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC--
T ss_pred CeeEeCCCCCcccccCCCccc
Confidence 569999999999999998753
No 224
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.47 E-value=1.1e-07 Score=59.99 Aligned_cols=36 Identities=25% Similarity=0.629 Sum_probs=32.6
Q ss_pred ccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCc
Q psy10125 145 KCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQ 188 (312)
Q Consensus 145 ~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~ 188 (312)
.||+|++.||++++||.. ..|++|++.||++++||.
T Consensus 2 ~C~~Cg~~GH~~~~C~~~--------~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP--------KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB--------TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc--------CeEccCCCcCCccCcCcC
Confidence 499999999999999975 469999999999999984
No 225
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.44 E-value=7.3e-08 Score=67.45 Aligned_cols=46 Identities=26% Similarity=0.640 Sum_probs=18.8
Q ss_pred ccccCCCCCCCCcCCCCCCCCCC--CCCccccccCcccccccCCCccc
Q psy10125 145 KCYECGGRGHYARDCRSRRSGGS--GRPELCKINGRRVRVEMSNPQKM 190 (312)
Q Consensus 145 ~c~~Cg~~Gh~a~~Cp~~~~~~~--g~~~~c~~cG~~gh~~~~cp~~~ 190 (312)
.||+|++.||++++||....... .....|++||+.||++++||...
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp --------------------------CCCSCSSCSSCSSCSTTCCCTT
T ss_pred ccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCcc
Confidence 49999999999999998643211 13467999999999999999764
No 226
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.43 E-value=1.7e-07 Score=64.33 Aligned_cols=29 Identities=38% Similarity=0.888 Sum_probs=23.4
Q ss_pred CCccccccCCcCccccCCCCCCCCCCCCC
Q psy10125 217 PDDKCYECGGRGHYARDCRSRRSGGGGRR 245 (312)
Q Consensus 217 ~~~~C~~Cg~~GH~ar~Cp~~~~~~~~~~ 245 (312)
....||+||+.||||+|||.........+
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~~~~~~~~~ 50 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKKPRGPRGPR 50 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTCCCSSCSCC
T ss_pred CCCcceeCCCCCcccccCcCCccccCCCC
Confidence 45679999999999999999877644433
No 227
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.42 E-value=2.5e-07 Score=62.03 Aligned_cols=40 Identities=35% Similarity=0.754 Sum_probs=35.0
Q ss_pred CccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcc
Q psy10125 144 DKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQK 189 (312)
Q Consensus 144 ~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~ 189 (312)
..||+|++.||++++|+... ...|++||+.||++++||..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~~------~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAPR------RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCSS------CCSCSSSCCSSCCGGGCCSS
T ss_pred CeeeecCCCCcChhhCcCCC------CCeeCcCCCcCCccCCCcCC
Confidence 45999999999999999863 24699999999999999964
No 228
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.41 E-value=3.5e-07 Score=66.69 Aligned_cols=43 Identities=33% Similarity=0.731 Sum_probs=36.6
Q ss_pred CCccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCccc
Q psy10125 143 DDKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKM 190 (312)
Q Consensus 143 ~~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~~ 190 (312)
...||+|++.||++++|+.... ...|++||+.||++++||...
T Consensus 24 ~~~C~~Cg~~GH~a~~C~~~~~-----~~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 24 GDRCYNCGGLDHHAKECKLPPQ-----PKKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp TSCCTTTCCSSSCTTTCSSCCC-----CCCCTTTCCTTSCGGGCTTGG
T ss_pred CCcccccCCcCcCcccCCCCCC-----CCccCCcCCcCCccCcCcCCc
Confidence 3569999999999999997532 257999999999999999764
No 229
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.34 E-value=3.6e-07 Score=62.71 Aligned_cols=40 Identities=30% Similarity=0.676 Sum_probs=35.1
Q ss_pred CccccCCCCCCCCcCCCCCCCCCCCCCccccccCcccccccCCCcc
Q psy10125 144 DKCYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQK 189 (312)
Q Consensus 144 ~~c~~Cg~~Gh~a~~Cp~~~~~~~g~~~~c~~cG~~gh~~~~cp~~ 189 (312)
..||+|++.||++++|+... ...|++||+.||++++||..
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~~------~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAPR------KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSCS------CCBCTTTCCBSSCGGGCSSS
T ss_pred cceeeeCCCCcChhhcCCCC------CCEeCCCCCcCCccCCCcCc
Confidence 45999999999999999753 24799999999999999975
No 230
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.28 E-value=3.7e-07 Score=54.28 Aligned_cols=22 Identities=45% Similarity=1.052 Sum_probs=19.2
Q ss_pred CccccccCCcCccccCCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRRS 239 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~~ 239 (312)
...|||||++||+|++|+.+..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~prk 27 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAPRR 27 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSSSS
T ss_pred CCEEEECCccccCHhHCccccc
Confidence 4579999999999999998753
No 231
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.26 E-value=1.1e-06 Score=76.86 Aligned_cols=63 Identities=21% Similarity=0.379 Sum_probs=56.5
Q ss_pred CCHHHHHHHhhcCCCeeEEEEeeC---------CCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 50 STKEDIEDAFSYYGPIKNVWVARN---------PPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 50 ~teedL~~~F~~~G~I~~v~i~~~---------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
-.+++|.+.|++||.|..+.|..+ ++|++||+|.+.++|++|+..|++..+.|+.|.|+++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 456789999999999999998732 469999999999999999999999999999999998753
No 232
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=2e-05 Score=61.27 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEe
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYY-----GPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~-----G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 109 (312)
..+|-+-+||..+++..|+.++..+ |.+..+.+..+ -+-|+|+|.+...|.+|.-+|++.+|.++.|++--
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4678999999999999999999999 99999988866 56699999999999999989999999999998753
No 233
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.92 E-value=7.8e-06 Score=60.80 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=22.2
Q ss_pred ccccccCcccccccCCCcccCCCCCCCCCCCCCCCCCccCCCCCCCCCccccccCCcCccccCCCCC
Q psy10125 171 ELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRGHYARDCRSR 237 (312)
Q Consensus 171 ~~c~~cG~~gh~~~~cp~~~~g~~~g~~g~~~G~~g~~~~~~~~~~~~~~C~~Cg~~GH~ar~Cp~~ 237 (312)
..|++|++.||.+++||.. ..||+|++.||++++|+.+
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~-----------------------------~rcY~c~~~gh~~~~c~~p 43 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI-----------------------------WRAYILVDDNEKAKPKVLP 43 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG-----------------------------TCCCCBC------------
T ss_pred CCCCCCCCCCCccccCCCc-----------------------------ccccccccCCcccccccCC
Confidence 4699999999999999963 2499999999999999875
No 234
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=4.1e-06 Score=57.24 Aligned_cols=22 Identities=32% Similarity=1.013 Sum_probs=18.7
Q ss_pred CccccccCCcCccccCCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRRS 239 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~~ 239 (312)
...||+||++|||+++||...+
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~~~ 28 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTNGD 28 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGGGC
T ss_pred CCccccCCCcCcccccCCCCCC
Confidence 4679999999999999995443
No 235
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.38 E-value=0.00022 Score=45.34 Aligned_cols=25 Identities=36% Similarity=0.886 Sum_probs=20.2
Q ss_pred CCCCccccCCCCCCCCcCCCCCCCC
Q psy10125 141 NPDDKCYECGGRGHYARDCRSRRSG 165 (312)
Q Consensus 141 ~~~~~c~~Cg~~Gh~a~~Cp~~~~~ 165 (312)
.....||+|++.|||+++||....+
T Consensus 8 ~~~~~C~~Cgk~GH~ardCP~~~~~ 32 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKKPRG 32 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSSCCC
T ss_pred CCCCeeeECCCCCcchhhCcCCccc
Confidence 3456799999999999999986543
No 236
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.26 E-value=0.00015 Score=50.92 Aligned_cols=21 Identities=43% Similarity=1.145 Sum_probs=18.3
Q ss_pred CccccccCCcCccccCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRR 238 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~ 238 (312)
...||+|++.||+|++||.+.
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~~ 27 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLPP 27 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSCC
T ss_pred CCcccccCCCCcChhhCCCCC
Confidence 356999999999999999753
No 237
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.11 E-value=0.00024 Score=40.81 Aligned_cols=20 Identities=40% Similarity=1.109 Sum_probs=15.2
Q ss_pred CccccCCCCCCCCcCCCCCC
Q psy10125 144 DKCYECGGRGHYARDCRSRR 163 (312)
Q Consensus 144 ~~c~~Cg~~Gh~a~~Cp~~~ 163 (312)
..||+||+.||++++||+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 34888888888888888653
No 238
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.06 E-value=0.00071 Score=46.23 Aligned_cols=27 Identities=33% Similarity=0.794 Sum_probs=21.6
Q ss_pred CCCCCCccccCCCCCCCCcCCCCCCCC
Q psy10125 139 PFNPDDKCYECGGRGHYARDCRSRRSG 165 (312)
Q Consensus 139 ~~~~~~~c~~Cg~~Gh~a~~Cp~~~~~ 165 (312)
.......||+|++.|||+++||.....
T Consensus 19 ~~~~~~~C~~Cge~GH~ardCp~~~~~ 45 (56)
T 1u6p_A 19 SQLDRDQCAYCKEKGHWAKDCPKKPRG 45 (56)
T ss_dssp TTCCTTBCSSSCCBSSCGGGCTTCCCS
T ss_pred CCCCCCcceeCCCCCcccccCcCCccc
Confidence 344567799999999999999986543
No 239
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.04 E-value=0.0021 Score=49.45 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCCC-C----HHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSS-T----KEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~-t----eedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
.++|+|.||+.++ + .+.++++|.+|+++......+. -.-..|.|.++++|.+|-..|++..+.|+.++|-++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999998765 2 2567899999999988776643 33568999999999999999999999999999999885
Q ss_pred CC
Q psy10125 113 QK 114 (312)
Q Consensus 113 ~~ 114 (312)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 240
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.0071 Score=46.36 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYY-----GPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNP 112 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~-----G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 112 (312)
..+|.|.|||+.+.++.|+-+|++- |.|..++... .-|+|+|.+...|+..++. ..+.|.+..|.|.-..+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 4689999999999999999999872 5677777652 7899999999999999863 36788888888876554
Q ss_pred CC
Q psy10125 113 QK 114 (312)
Q Consensus 113 ~~ 114 (312)
+.
T Consensus 84 ~~ 85 (104)
T 2dhx_A 84 RA 85 (104)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 241
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.67 E-value=0.00089 Score=55.10 Aligned_cols=22 Identities=41% Similarity=1.096 Sum_probs=18.8
Q ss_pred CccccccCCcCccccCCCCCCC
Q psy10125 218 DDKCYECGGRGHYARDCRSRRS 239 (312)
Q Consensus 218 ~~~C~~Cg~~GH~ar~Cp~~~~ 239 (312)
...||||++.||+|++||.+..
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~~ 118 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPPQ 118 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCCC
T ss_pred CCcccEeCCccchhhhCCCCCC
Confidence 3569999999999999998543
No 242
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.65 E-value=0.013 Score=43.97 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=57.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeC-------CCcEEEEEeCCHHHHHHHHHhCCCceeCC-----eEEE
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-------PPGFGFVEFEDRRDAEDAVRGFDGREING-----RRVR 106 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~-------~kG~afV~f~~~~~A~~Ai~~l~g~~i~g-----~~i~ 106 (312)
++|.|.+||+++|++++.+.++....+.....+.. .-.-|+|.|.+.+++..-...+++..+.+ ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 68999999999999999999999877655544321 24689999999999999999999877642 2345
Q ss_pred EEecCC
Q psy10125 107 VEMSNP 112 (312)
Q Consensus 107 V~~a~~ 112 (312)
|++|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666643
No 243
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.62 E-value=0.0064 Score=46.13 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=45.6
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF 95 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l 95 (312)
....-++| .+|.++...||.++|+.||.|. |.++- --.|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid--DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID--DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE--TTEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc--CCeEEEEecCHHHHHHHHHhc
Confidence 34566777 9999999999999999999764 44443 358999999999999998765
No 244
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=96.29 E-value=0.0024 Score=37.47 Aligned_cols=20 Identities=50% Similarity=1.208 Sum_probs=15.2
Q ss_pred CccccCCCCCCCCcCCCCCC
Q psy10125 144 DKCYECGGRGHYARDCRSRR 163 (312)
Q Consensus 144 ~~c~~Cg~~Gh~a~~Cp~~~ 163 (312)
..||+|++.||++++|+...
T Consensus 7 ~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSSS
T ss_pred CEEEECCccccCHhHCcccc
Confidence 35888888888888887653
No 245
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.07 E-value=0.0092 Score=45.38 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=44.0
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCC
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFD 96 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~ 96 (312)
.-++| .+|.++...||.++|+.||.| .|.++-+ -.|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--CeEEEEecCHHHHHHHHHhcc
Confidence 44566 999999999999999999955 4444433 589999999999999998653
No 246
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.96 E-value=0.0042 Score=42.20 Aligned_cols=20 Identities=35% Similarity=1.104 Sum_probs=16.7
Q ss_pred CccccCCCCCCCCcCCCCCC
Q psy10125 144 DKCYECGGRGHYARDCRSRR 163 (312)
Q Consensus 144 ~~c~~Cg~~Gh~a~~Cp~~~ 163 (312)
..||+|++.|||+++||...
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGGG
T ss_pred CccccCCCcCcccccCCCCC
Confidence 45999999999999999543
No 247
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.84 E-value=0.045 Score=43.08 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=55.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCC-eEEEEEe
Q psy10125 37 LVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREING-RRVRVEM 109 (312)
Q Consensus 37 ~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g-~~i~V~~ 109 (312)
..+-|-|-++|+.. ...|...|++||.|.+.... ....+-.|.|.++.+|++||. .|+..|.+ ..|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 35678899999885 56677899999999887763 235689999999999999995 69999975 5565554
No 248
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.01 E-value=0.061 Score=40.75 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=53.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEee-------CCCcEEEEEeCCHHHHHHHHHhCCCceeCC-----eEE
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR-------NPPGFGFVEFEDRRDAEDAVRGFDGREING-----RRV 105 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~-------~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g-----~~i 105 (312)
+.+|.|..||+.+||+++.+.++..=.+.....+. ..-.-|||.|.+.++...-.+.+++..+.+ ...
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 46899999999999999888777654432111111 123578999999999999999999977643 235
Q ss_pred EEEecC
Q psy10125 106 RVEMSN 111 (312)
Q Consensus 106 ~V~~a~ 111 (312)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 567664
No 249
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.24 E-value=0.023 Score=55.02 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=43.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHH
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVR 93 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~ 93 (312)
..+|+|. .+..+++.+|.+.|++||.|.++.+..+..-||.|+|.+.+++++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 4789997 799999999999999999999998887766799999999999987764
No 250
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.74 E-value=0.068 Score=42.68 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=53.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEee--------------C----CCcEEEEEeCCHHHHHHHHHhCCCce
Q psy10125 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKN-VWVAR--------------N----PPGFGFVEFEDRRDAEDAVRGFDGRE 99 (312)
Q Consensus 39 ~~l~V~nLp~~~teedL~~~F~~~G~I~~-v~i~~--------------~----~kG~afV~f~~~~~A~~Ai~~l~g~~ 99 (312)
+.|-|-++|++.+.. +-+.|++||.|.+ +.+.. - ......|.|+++.+|.+||. .|+..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 567888998776654 5678999999966 21110 0 14577999999999999995 69999
Q ss_pred eCCeEEEEEecC
Q psy10125 100 INGRRVRVEMSN 111 (312)
Q Consensus 100 i~g~~i~V~~a~ 111 (312)
|.|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988777654
No 251
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=87.83 E-value=0.28 Score=39.43 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHhCCCc
Q psy10125 74 PPGFGFVEFEDRRDAEDAVRGFDGR 98 (312)
Q Consensus 74 ~kG~afV~f~~~~~A~~Ai~~l~g~ 98 (312)
++||+||+|.+.++|++|+..+++.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhccc
Confidence 6899999999999999999887653
No 252
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=87.29 E-value=0.17 Score=40.58 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=35.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHhC-CCceeCCeEEEEEecCCC
Q psy10125 74 PPGFGFVEFEDRRDAEDAVRGF-DGREINGRRVRVEMSNPQ 113 (312)
Q Consensus 74 ~kG~afV~f~~~~~A~~Ai~~l-~g~~i~g~~i~V~~a~~~ 113 (312)
.+|+++|+|.+.++|++|++.+ ++..++| .|.+.++..+
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 5899999999999999999999 9999999 9999987654
No 253
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.34 E-value=4.8 Score=39.14 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=44.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFD 96 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~ 96 (312)
...++|+ +|..+...+|.+.|+.||.+ .|.++. .-.|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid--dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS--SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc--CCeEEEEECCHHHHHHHHHHHH
Confidence 4566665 89999999999999999964 444432 4579999999999999998774
No 254
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.16 E-value=12 Score=25.96 Aligned_cols=68 Identities=9% Similarity=0.158 Sum_probs=43.3
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhcCCCe-----eEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCCceeCCeEEEEEecC
Q psy10125 40 YVSIV-LCSTSSTKEDIEDAFSYYGPI-----KNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSN 111 (312)
Q Consensus 40 ~l~V~-nLp~~~teedL~~~F~~~G~I-----~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 111 (312)
+|||. +-...++..+|..++..-+.+ -.+++. ..|.||+..... +..++..|+...+.++.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~---d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM---DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC---SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe---CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 45663 224557778888888866554 455555 568999988654 667788888999999999888764
No 255
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=58.57 E-value=3.7 Score=23.00 Aligned_cols=19 Identities=32% Similarity=0.728 Sum_probs=16.5
Q ss_pred cccccCCcCccccCCCCCC
Q psy10125 220 KCYECGGRGHYARDCRSRR 238 (312)
Q Consensus 220 ~C~~Cg~~GH~ar~Cp~~~ 238 (312)
-|-.|..=||++.+|++..
T Consensus 5 YCe~CE~FGH~t~~C~d~e 23 (26)
T 2hqh_E 5 YCEICEMFGHWATNCNDDE 23 (26)
T ss_dssp EETTTTEESSCGGGCCTTC
T ss_pred cchHHHHhCcccccCCccc
Confidence 3999999999999997654
No 256
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=53.08 E-value=3 Score=31.52 Aligned_cols=22 Identities=27% Similarity=0.105 Sum_probs=0.0
Q ss_pred hcCCCceEEEEcCCCCCCCHHH
Q psy10125 33 ARYMLVIYVSIVLCSTSSTKED 54 (312)
Q Consensus 33 ~~~~~~~~l~V~nLp~~~teed 54 (312)
.+....++|||+|||+++|++.
T Consensus 92 ~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 92 ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ----------------------
T ss_pred cccCCCCceEeCCCCCCccccc
Confidence 3445567899999999999864
No 257
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=51.43 E-value=70 Score=23.53 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhC
Q psy10125 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF 95 (312)
Q Consensus 36 ~~~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l 95 (312)
....-|-|-|+|..+-..++.-+....|---.++.+ -|.|.|.|.+.++...|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHH
Confidence 345667888999999999998888888866666666 688999999999999999766
No 258
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=38.10 E-value=12 Score=23.43 Aligned_cols=19 Identities=32% Similarity=0.728 Sum_probs=16.9
Q ss_pred cccccCCcCccccCCCCCC
Q psy10125 220 KCYECGGRGHYARDCRSRR 238 (312)
Q Consensus 220 ~C~~Cg~~GH~ar~Cp~~~ 238 (312)
-|-.|.-=||++.+|++..
T Consensus 22 YCd~CEvFGH~t~~Cndde 40 (42)
T 2pzo_E 22 YCEICEMFGHWATNCNDDE 40 (42)
T ss_dssp EETTTTEESSCGGGCCTTC
T ss_pred ccccccccCcccccCCccc
Confidence 4999999999999998754
No 259
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=33.07 E-value=15 Score=34.37 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=17.9
Q ss_pred ccccccccccccccCcccccccCc
Q psy10125 255 APCQTGIEYIISKYSAVSHAEVAP 278 (312)
Q Consensus 255 ~~~~~g~~f~~~~~~~~~~~~~~~ 278 (312)
+.+.+|||| ++|++|+| +|+.
T Consensus 28 ~~~~~~~~~--~~~~~~~~-~~~~ 48 (434)
T 2db3_A 28 SGIASGIHF--SKYNNIPV-KVTG 48 (434)
T ss_dssp CCCCCCTTG--GGGGGSCE-EEES
T ss_pred cCcccccCh--hhhcCcee-EecC
Confidence 678999999 99999998 6653
No 260
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=31.39 E-value=1e+02 Score=20.27 Aligned_cols=56 Identities=18% Similarity=-0.007 Sum_probs=41.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhC
Q psy10125 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF 95 (312)
Q Consensus 38 ~~~l~V~nLp~~~teedL~~~F~~~G~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l 95 (312)
..++.|.++.-..=...|+..+.+ -.|..+.+... .+-+.|.|.+.+....+|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-CCEEEEEECCHHHHHHHHHHc
Confidence 457889998877778889999999 88877776532 456778887666666777654
No 261
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.37 E-value=2.3e+02 Score=20.26 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=32.4
Q ss_pred CHHHHHHHhhc----CC-CeeEEEEeeCCCcEEEEEeCCHHHHHHHHHhCCC
Q psy10125 51 TKEDIEDAFSY----YG-PIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG 97 (312)
Q Consensus 51 teedL~~~F~~----~G-~I~~v~i~~~~kG~afV~f~~~~~A~~Ai~~l~g 97 (312)
.|..++..+.+ .+ .|..+.+...-.||-||++...++...++....+
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 45555554442 23 3556666555789999999999998888877765
Done!