RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10125
(312 letters)
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 70.3 bits (172), Expect = 5e-16
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 45 LCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRR 104
L + K D+E FS YG I V GF FV++ + R+A AV G DGR I G+
Sbjct: 23 LNTLVVKKSDVEAIFSKYGKIVGCSV---HKGFAFVQYVNERNARAAVAGEDGRMIAGQV 79
Query: 105 VRVEMSNPQKMRGRSNGRSG 124
+ + ++ K+ RS SG
Sbjct: 80 LDINLAAEPKVN-RSGPSSG 98
Score = 25.2 bits (55), Expect = 4.2
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGRSG 199
I G+ + + ++ K+ RS SG
Sbjct: 74 MIAGQVLDINLAAEPKVN-RSGPSSG 98
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 69.3 bits (169), Expect = 2e-15
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPP--GFGFVEFEDRRDAEDAVRGFDGREINGRRVRVE 108
T E++ D F YGPI+ + V P G +V +ED DA++A G + R + V
Sbjct: 20 TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVL 79
Query: 109 MSNPQKMRGRSNGR 122
N + + + +
Sbjct: 80 YYNANRAFQKMDTK 93
Score = 25.7 bits (56), Expect = 3.4
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGR 197
+ R + V N + + + +
Sbjct: 70 NVCNRYLVVLYYNANRAFQKMDTK 93
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 64.6 bits (157), Expect = 5e-14
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN------PPGFGFVEFEDRRDAEDAVRGF-DGRE 99
+ + +I + FS +G +K V + + GFGFV+F ++DA+ A
Sbjct: 17 PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 76
Query: 100 INGRRVRVEMSNPQK 114
+ GRR+ +E ++ +
Sbjct: 77 LYGRRLVLEWADSEV 91
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 64.2 bits (156), Expect = 6e-14
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREIN 101
T+ + + FS GPI ++ V R+ G+ +V F+ DAE A+ + I
Sbjct: 9 HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 68
Query: 102 GRRVRVEMSN 111
G+ VR+ S
Sbjct: 69 GKPVRIMWSQ 78
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 63.0 bits (153), Expect = 2e-13
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 52 KEDIEDAFSYYGPIKNVWVARNPP-GFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
+ED+ S +G I+ + + P G V F D +A+ ++ DGR GR++ +
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
Query: 111 NP 112
+
Sbjct: 93 DG 94
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 62.3 bits (151), Expect = 2e-13
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNP----PGFGFVEFEDRRDAEDAVRGFDGREING 102
+ DI++ F+ +G +K V + G V FE + DA A++ ++G ++G
Sbjct: 9 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 68
Query: 103 RRVRVEMSN 111
R + +++
Sbjct: 69 RPMNIQLVT 77
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 59.3 bits (143), Expect = 3e-12
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 47 STSSTKEDIEDAFSYYGPI--------KNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGR 98
+ S+T+E ++ FS G I KN GFGFVE++ A+ A++ G
Sbjct: 7 NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 66
Query: 99 EINGRRVRVEMSNPQK 114
++G ++ V +S
Sbjct: 67 TVDGHKLEVRISERAT 82
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 59.6 bits (144), Expect = 3e-12
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPP-----GFGFVEFEDRRDAEDAVRGFDGREIN 101
S +T+E I + FS G IK + + + GF FVE+ R DAE+A+R +G ++
Sbjct: 16 SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 75
Query: 102 GRRVRVEMSNPQKMRGRSNGR 122
R +R + G GR
Sbjct: 76 DRIIRTDWD-----AGFKEGR 91
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 59.2 bits (143), Expect = 4e-12
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
T + + FS +G I + V + FV F A A+ +G I G V+
Sbjct: 31 TDQLMRQTFSPFGQIMEIRVFPEKG-YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 89
Query: 111 NPQ 113
Sbjct: 90 KES 92
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 57.4 bits (138), Expect = 2e-11
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAV 92
V+YV + + + + AF +G I ++ + + GF FVEFE DA A+
Sbjct: 7 VLYVGGL--AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
Query: 93 RGFDGREINGRRVRVEMSNPQKMR 116
+ E+ GR +RV ++ P +++
Sbjct: 65 DNMNESELFGRTIRVNLAKPMRIK 88
Score = 26.2 bits (57), Expect = 1.9
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 174 KINGRRVRVEMSNPQKMR 191
++ GR +RV ++ P +++
Sbjct: 71 ELFGRTIRVNLAKPMRIK 88
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 57.7 bits (139), Expect = 2e-11
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPG----FGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
+E + YG ++ + V N +V+F DAE AV + R NG+ +
Sbjct: 40 FEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99
Query: 107 VEMS 110
E+S
Sbjct: 100 AELS 103
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 56.9 bits (137), Expect = 2e-11
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
T ++ F GPI + R+ G+ FV+F D++ A++ +G + +R+
Sbjct: 15 TDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 74
Query: 106 RVEMSNP 112
+V + P
Sbjct: 75 KVSYARP 81
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 57.0 bits (137), Expect = 2e-11
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
S + T++++++ F I+ V G ++EF+ DAE + G EI+GR V
Sbjct: 25 SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84
Query: 107 VEMSNPQK 114
+ + +
Sbjct: 85 LYYTGEKG 92
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 56.7 bits (136), Expect = 3e-11
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 51 TKEDIEDAFSYYGPIKNVWV------ARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRR 104
++ + D FS +G I N G+ F+ F ++ A+ +G+ + R
Sbjct: 11 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 70
Query: 105 VRVEMSNPQKMRG 117
+ V + + +G
Sbjct: 71 ITVSYAFKKDSKG 83
Score = 25.1 bits (54), Expect = 3.8
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 173 CKINGRRVRVEMSNPQKMRG 192
+ R + V + + +G
Sbjct: 64 QYLCNRPITVSYAFKKDSKG 83
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 56.5 bits (136), Expect = 3e-11
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
T+E++ F YG V++ GFGF+ E R AE A D + G+++RV +
Sbjct: 21 TEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 79
Query: 111 NP 112
Sbjct: 80 CH 81
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 56.6 bits (136), Expect = 4e-11
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
+ T++++ + FS YG + +V++ + F FV F D + A+ + I G V
Sbjct: 14 TGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVH 71
Query: 107 VEMSNPQKMRGRSNGRSGG 125
+ + P+ G S G
Sbjct: 72 ISNAEPKHNSNS--GPSSG 88
Score = 25.0 bits (54), Expect = 5.3
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGRSGG 200
I G V + + P+ G S G
Sbjct: 64 IIKGISVHISNAEPKHNSNS--GPSSG 88
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 56.5 bits (136), Expect = 4e-11
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREING--R 103
T + ++ F YG I + R+ P G FV + R +A++A+ + G +
Sbjct: 19 TDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 78
Query: 104 RVRVE 108
+ V
Sbjct: 79 PLSVR 83
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 55.8 bits (134), Expect = 9e-11
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 51 TKEDIEDAFSYYGPI-KNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREI--NGRRVRV 107
T + + FS +G + K + +N +++ D A+ A DG+ I +R+
Sbjct: 20 TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 79
Query: 108 EMSNPQKMRGRSNGRSGGD 126
+ S + + N D
Sbjct: 80 DFSKLTSLNVKYNNDKSRD 98
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 55.5 bits (133), Expect = 1e-10
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREIN 101
S +S++ED+E FS YGP+ + + P GF FV F A A DG+
Sbjct: 17 SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76
Query: 102 GRRVRVEMSNPQKMRGRSNGRSG 124
GR + V S +K +S SG
Sbjct: 77 GRMLHVLPSTIKKEASQSGPSSG 99
Score = 28.1 bits (62), Expect = 0.53
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGRSG 199
GR + V S +K +S SG
Sbjct: 74 VFQGRMLHVLPSTIKKEASQSGPSSG 99
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 54.7 bits (131), Expect = 1e-10
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPG---FGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107
+ + D FS +G I + V + G +GFV FE + AE A+ +G +N R+V V
Sbjct: 21 DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 80
Query: 108 EMSNPQKMR 116
+K R
Sbjct: 81 GRFKSRKER 89
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 54.7 bits (131), Expect = 2e-10
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNP---PGFGFVEFEDRRDAEDAVRGFDGREINGR 103
S T+ I FS GP K+ + + FVEF + RDA A+ +GR+I G+
Sbjct: 17 SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGK 76
Query: 104 RVRVEMSNPQKMR 116
V+V + +
Sbjct: 77 EVKVNWATTPSSQ 89
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.6 bits (131), Expect = 2e-10
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPP-------GFGFVEFEDRRDAEDAVRGFDGREINGR 103
ED+ D S YG +K++ + R G FVEF D + A++G GR+ R
Sbjct: 27 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 86
Query: 104 RVRVEMSNPQK 114
V + +P
Sbjct: 87 VVVTKYCDPDS 97
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.9 bits (129), Expect = 4e-10
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 51 TKEDIEDAFSYYGP-----IKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
++ + + F GP + V G+GFVEF DA+ A++ D ++ G+ +
Sbjct: 22 SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 81
Query: 106 RVEMSNPQK 114
RV ++
Sbjct: 82 RVNKASAHN 90
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 53.1 bits (127), Expect = 5e-10
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
T + AFS +G I ++ + P FV +E A+ AV +G ++ +++V ++
Sbjct: 16 TPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 74
Query: 111 NPQKM 115
Q M
Sbjct: 75 RKQPM 79
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 53.4 bits (128), Expect = 5e-10
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNP-----PGFGFVEFEDRRDAEDAVRGFDGREIN 101
+T++D+++ FS +G + V V ++ GFGFV F + + I+
Sbjct: 17 PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRH--MID 74
Query: 102 GRRVRVEMSNPQKMR 116
GR ++ N ++ +
Sbjct: 75 GRWCDCKLPNSKQSQ 89
Score = 24.5 bits (53), Expect = 8.0
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 171 ELCKINGRRVRVEMSNPQKMR 191
+ I+GR ++ N ++ +
Sbjct: 69 QRHMIDGRWCDCKLPNSKQSQ 89
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 53.2 bits (127), Expect = 5e-10
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNP-----PGFGFVEFEDRRDAEDAVRGFDGREIN 101
+ T+E+ F G I++ + R+ G+GFV + D +DAE A+ +G +
Sbjct: 11 PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ 70
Query: 102 GRRVRVEMSNP 112
+ ++V + P
Sbjct: 71 TKTIKVSYARP 81
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 53.1 bits (127), Expect = 6e-10
Identities = 11/73 (15%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPP-----GFGFVEFEDRRDAEDAVRGFDGREIN 101
+ +++ + +GP+K + ++ G+ F E+ D + A+ G +G ++
Sbjct: 10 PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 69
Query: 102 GRRVRVEMSNPQK 114
+++ V+ ++
Sbjct: 70 DKKLLVQRASVGA 82
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 52.8 bits (126), Expect = 6e-10
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREIN 101
S +T+ D+ + FS YGPI +V + + GF FV FE+ DA++A +G E++
Sbjct: 18 SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 77
Query: 102 GRRVRV 107
GRR+RV
Sbjct: 78 GRRIRV 83
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 54.1 bits (129), Expect = 9e-10
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGF-----GFVEFEDRRDAEDAVRGFDGREINGRRV 105
+ + F YGPI++V + + GFV+F+ A+ A+ G +G I +R+
Sbjct: 55 DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114
Query: 106 RVEMSNPQKMRGRSNGRSGGDRGY 129
+V ++ R G G GY
Sbjct: 115 KVALAASGHQRPGIAGAVGDGNGY 138
Score = 32.2 bits (72), Expect = 0.031
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGRSGGDRGY 204
I +R++V ++ R G G GY
Sbjct: 108 NILNKRLKVALAASGHQRPGIAGAVGDGNGY 138
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 52.3 bits (125), Expect = 1e-09
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG 97
++YV + S+++E IE F+ P V + + FV F +R DA +A++ +G
Sbjct: 10 ILYVRNL--MLSTSEEMIEKEFNNIKPGAVERV-KKIRDYAFVHFSNREDAVEAMKALNG 66
Query: 98 REINGRRVRVEMSNPQK 114
+ ++G + V ++ P
Sbjct: 67 KVLDGSPIEVTLAKPVD 83
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 52.4 bits (125), Expect = 1e-09
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN---PPGFGFVEFEDRRDAEDAVRGFDGREINGR 103
D+ F +G I +V + N GFGFV FE+ DA+ A G + GR
Sbjct: 20 PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR 79
Query: 104 RVRVEMSNPQKMRGRSN 120
++ V + R +N
Sbjct: 80 KIEVNNATA---RVMTN 93
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 52.8 bits (126), Expect = 1e-09
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG 97
V+ VS L T + + F YG ++ V + N V+ D A+ A+ +G
Sbjct: 4 VLLVSN-LNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 62
Query: 98 REINGRRVRVEMSNPQKMRGRSNGRSGGD--RGYRGS 132
+++G+ +R+ +S Q ++ G+ + Y S
Sbjct: 63 HKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS 99
Score = 25.1 bits (54), Expect = 5.2
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGRSGGD--RGYRGS 207
K++G+ +R+ +S Q ++ G+ + Y S
Sbjct: 64 KLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS 99
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 51.5 bits (123), Expect = 2e-09
Identities = 9/68 (13%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPP-----GFGFVEFEDRRDAEDAVRGFDGREIN 101
S + +E I + F +G ++++ + + GF F+ F++ + + +
Sbjct: 8 SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG 66
Query: 102 GRRVRVEM 109
+ +++
Sbjct: 67 LSKCEIKV 74
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 51.6 bits (123), Expect = 2e-09
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
+ D+++ F +G I +++A++ GF F+ F R DA A+ G G + +
Sbjct: 21 RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 80
Query: 106 RVEMSNP 112
VE + P
Sbjct: 81 NVEWAKP 87
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 51.2 bits (122), Expect = 3e-09
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNP--PGFGFVEFEDRRDAEDAVRGFDGREINGRR 104
+DIED F YG I+++ + P F FVEFED RDAEDAV G DG + +G R
Sbjct: 23 PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 82
Query: 105 VRVEMSNPQKMRG 117
+RVE + G
Sbjct: 83 LRVEFPRSGRGTG 95
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 51.2 bits (122), Expect = 4e-09
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREIN 101
+ D+ED FS G +++V + + G +VEF + + G G+ +
Sbjct: 27 AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-LAIGLTGQRLL 85
Query: 102 GRRVRVEMSNPQKMR 116
G + V+ S +K R
Sbjct: 86 GVPIIVQASQAEKNR 100
Score = 24.6 bits (53), Expect = 7.3
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 174 KINGRRVRVEMSNPQKMR 191
++ G + V+ S +K R
Sbjct: 83 RLLGVPIIVQASQAEKNR 100
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 50.8 bits (121), Expect = 4e-09
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 47 STSSTKEDIEDAFSYYGP-------IKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGR- 98
+E+I + + + GF FVE+E R A A R
Sbjct: 10 PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR 69
Query: 99 -EINGRRVRVEMSNPQK 114
++ G ++ V+ + P+
Sbjct: 70 IQLWGHQIAVDWAEPEI 86
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 50.4 bits (120), Expect = 4e-09
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 51 TKEDIEDAFSYYGPIKNVW-----VARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
T++++E FS YG I V G GF+ F+ R +AE+A++G +G++ +G
Sbjct: 19 TQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 78
Query: 106 RVEMS 110
+ +
Sbjct: 79 PITVK 83
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 50.0 bits (119), Expect = 6e-09
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPP-----GFGFVEFEDRRDAEDAVRGFDGREIN 101
S +T+E + + F +G +K V R+P GFGFV F D+ + + E++
Sbjct: 9 SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELD 67
Query: 102 GRRVRVEM 109
+ + ++
Sbjct: 68 SKTIDPKV 75
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 50.1 bits (119), Expect = 7e-09
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 36 MLVIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF 95
M +Y+ + S + T +D+ F V G+ FV++ D+ A A+
Sbjct: 1 MNKLYIGNL--SPAVTADDLRQLFGDRKLPLAGQVLLKS-GYAFVDYPDQNWAIRAIETL 57
Query: 96 DGR-EINGRRVRVEMSNPQKMR 116
G+ E++G+ + V+ S +K+R
Sbjct: 58 SGKVELHGKIMEVDYSVSKKLR 79
Score = 23.9 bits (51), Expect = 9.8
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 133 VRARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSGRPEL---CKINGRRVRVEMSNPQK 189
+R G+ D + L +++G+ + V+ S +K
Sbjct: 18 LRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 77
Query: 190 MR 191
+R
Sbjct: 78 LR 79
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 50.4 bits (120), Expect = 7e-09
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPP-----GFGFVEFEDRRDAEDAVRGFDGREIN 101
S +T+E + + + +G + + V R+P GFGFV F + + A+ I+
Sbjct: 29 SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSID 87
Query: 102 GRRVRVEMSNPQKMRG 117
GR V + + ++ G
Sbjct: 88 GRVVEPKRAVAREESG 103
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 49.0 bits (116), Expect = 1e-08
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
T+ +I D + + F +++ + DA V +G +I G +
Sbjct: 14 TQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL 73
Query: 106 RVEMSNP 112
++SNP
Sbjct: 74 VTKVSNP 80
Score = 24.4 bits (52), Expect = 7.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 173 CKINGRRVRVEMSNP 187
KI G + ++SNP
Sbjct: 66 LKIEGYTLVTKVSNP 80
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 49.4 bits (117), Expect = 2e-08
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
T+ E F Y + F + A DA E G+ +++ +
Sbjct: 23 TRAKFESLFRTYDKDTTFQY-FKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81
Query: 111 NPQKMR 116
+
Sbjct: 82 QTLHIG 87
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 48.9 bits (116), Expect = 2e-08
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 52 KEDIEDAFSYYGPIKN--VWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEM 109
K+ + FS +G I + V + G FV F++ A +A+R G + +R++
Sbjct: 21 KKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 80
Query: 110 SNPQ 113
+
Sbjct: 81 AKTD 84
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 48.1 bits (114), Expect = 3e-08
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNP-----PGFGFVEFEDRRDAEDAVRGFDGREIN 101
S +TK+D++D FS +G + + + +P GFGFV F++ + + ++N
Sbjct: 8 SWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLN 66
Query: 102 GRRVRVE 108
G+ + +
Sbjct: 67 GKVIDPK 73
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 48.6 bits (115), Expect = 3e-08
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAV 92
+++V+ + + +++I++ F YG IKN+ + + G+ VE+E + A A
Sbjct: 9 ILFVTSI--HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 66
Query: 93 RGFDGREINGRRVRVEMSNPQ 113
+G EI G+ ++V+ +
Sbjct: 67 EALNGAEIMGQTIQVDWCFVK 87
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 48.6 bits (115), Expect = 3e-08
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 51 TKEDIEDAFSYYG-----PIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
T+E ++D FS G + P G+GF E++D+ A A+R +GRE +GR +
Sbjct: 21 TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80
Query: 106 RVEMSNPQKMRGRSNGRSGG 125
RV+ + +K + G
Sbjct: 81 RVDNAASEKNKEELKSLGTG 100
Score = 25.9 bits (56), Expect = 3.1
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGRSGG 200
+ +GR +RV+ + +K + G
Sbjct: 74 EFSGRALRVDNAASEKNKEELKSLGTG 100
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 48.6 bits (115), Expect = 3e-08
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 51 TKEDIEDAFSYYGPIKNVWVAR-------------NPPGFGFVEFEDRRDAEDAVRGFDG 97
T +D+ D F G +K P G V +ED A+ AV FDG
Sbjct: 21 TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 80
Query: 98 REINGRRVRVEMSNPQKMR 116
++ G +++V ++ +
Sbjct: 81 KDFQGSKLKVSLARKKPPM 99
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 48.2 bits (114), Expect = 5e-08
Identities = 7/75 (9%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGR 98
+ V+ ++ + G + + + + F + +++ A +G+
Sbjct: 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGK 79
Query: 99 EI---NGRRVRVEMS 110
E+ G+++ + ++
Sbjct: 80 EVVDDLGQKITLYLN 94
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 47.4 bits (112), Expect = 7e-08
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF-- 95
V+++ + + + +G I N + N F+E DA+ AV +
Sbjct: 10 VVHIM-DFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTT 67
Query: 96 DGREINGRRVRVEMSNPQK 114
+ G+ VRV +S K
Sbjct: 68 TPALVFGKPVRVHLSQKYK 86
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 45.8 bits (108), Expect = 3e-07
Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
+D+ F +G + + V + FGFV +++ A+ A++ +G +I +R+
Sbjct: 31 GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 90
Query: 106 RVEMSNPQKMR 116
+V++ +
Sbjct: 91 KVQLKRSKNDS 101
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 44.6 bits (105), Expect = 5e-07
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPG-----FGFVEFEDRRDAEDAVRGFDGREIN 101
S +T E + F +G + + V R+P FGFV + + + A+ +++
Sbjct: 15 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD 73
Query: 102 GRRVRVE 108
GR V +
Sbjct: 74 GRVVEPK 80
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 44.3 bits (104), Expect = 6e-07
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREIN 101
S ++T ED++ F +G + + + + GFGFV FE E EIN
Sbjct: 8 SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66
Query: 102 GRRVRVEM 109
+ V +
Sbjct: 67 NKMVECKK 74
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 45.2 bits (106), Expect = 6e-07
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFD- 96
V++V + S + D+ +A +G I V + VEFE+ A++ V
Sbjct: 17 VVHVRGL--CESVVEADLVEALEKFGTICYVMM-MPFKRQALVEFENIDSAKECVTFAAD 73
Query: 97 -GREINGRRVRVEMSNPQKM-RGRSNGRSGG 125
I G++ S +++ R ++G S G
Sbjct: 74 VPVYIAGQQAFFNYSTSKRITRPGNSGPSSG 104
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 44.3 bits (104), Expect = 8e-07
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
S +++ D Y FV + A++A++ F G+ +
Sbjct: 14 PQDSNCQEVHDLLKDYDLKYCYV--DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71
Query: 107 VEMSNPQKMRGRSNGRSGG 125
V++ + +G S G
Sbjct: 72 VQLQPTDAL--LCSGPSSG 88
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.4 bits (104), Expect = 9e-07
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPP-----GFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
++ +E FS YG I V V ++ GFGFV FE+ DA+DA+ +G+ ++GR++
Sbjct: 18 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77
Query: 106 RVEMSNPQK 114
RV+ +
Sbjct: 78 RVDQAGKSS 86
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 44.0 bits (103), Expect = 1e-06
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREIN 101
+T + F +G I+ V + G+GFV DR AE A + + I+
Sbjct: 19 PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 77
Query: 102 GRRVRVEMSNP-QKMRGRSNGRSGG 125
GR+ V ++ K R G + G
Sbjct: 78 GRKANVNLAYLGAKPRSLQTGFAIG 102
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 43.2 bits (101), Expect = 2e-06
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKN-VWVARNPPGFGFVEFEDRRDAEDAVRGFD 96
+++S + S ++ED++ FS G + + ++ +A A+
Sbjct: 12 TLHLSNI--PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLH 69
Query: 97 GREI-NGRRVRVEMSNPQ 113
++ +RV S
Sbjct: 70 NHDLGENHHLRVSFSKST 87
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 41.7 bits (97), Expect = 4e-06
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPP-----GFGFVEFEDRRDAEDAVR 93
+Y+ + +T +D+ YG I + + G+GFV+F+ A+ AV
Sbjct: 1 LYIRGL--QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 58
Query: 94 GFDGREINGRRVR 106
+ + +
Sbjct: 59 ALKASGVQAQMAK 71
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 41.7 bits (97), Expect = 8e-06
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREINGRRV 105
T+ D+ F+ + K + G F+ F ++ A A+ +G ++ G+ +
Sbjct: 31 TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 90
Query: 106 RVEMSNPQKMR 116
+E +K R
Sbjct: 91 VIEFGKNKKQR 101
Score = 24.4 bits (52), Expect = 9.9
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 174 KINGRRVRVEMSNPQKMR 191
K+ G+ + +E +K R
Sbjct: 84 KLYGKILVIEFGKNKKQR 101
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 40.7 bits (95), Expect = 1e-05
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 50 STKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGR-RVRVE 108
++ I F+ YG I ++ + + ++ + A A+ DGR + V+
Sbjct: 15 ASASYILLQFAQYGNILKHVMSNTG-NWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 72
Query: 109 MSNPQ 113
+
Sbjct: 73 PCIDK 77
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 41.2 bits (96), Expect = 1e-05
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREING--RRVRVE 108
+ + F +G I+ + F ++++E A+ A G + G RR+RV+
Sbjct: 30 SLAALAREFDRFGSIRTIDH-VKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88
Query: 109 MSNPQKMRG 117
+ G
Sbjct: 89 FAKSGPSSG 97
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 40.8 bits (95), Expect = 1e-05
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVAR-----NPPGFGFVEFEDRRDAEDAV 92
+I V + + + ++I D F Y I + P G V FE R +A AV
Sbjct: 11 IIKVQNM--PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 68
Query: 93 RGFDGREINGRRVRVEM 109
+ R I R+V++ +
Sbjct: 69 IDLNDRPIGSRKVKLVL 85
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.0 bits (95), Expect = 1e-05
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 40 YVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRG 94
+V + +KE+I FS + N G FV+F + AE A++
Sbjct: 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK- 75
Query: 95 FDGREINGRRVRVEMSNPQKMRGRSNGRSG 124
I R + + S+ ++R S SG
Sbjct: 76 KHKERIGHRYIEIFKSSRAEVR-TSGPSSG 104
Score = 24.8 bits (53), Expect = 6.8
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGRSG 199
+I R + + S+ ++R S SG
Sbjct: 80 RIGHRYIEIFKSSRAEVR-TSGPSSG 104
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 40.5 bits (94), Expect = 2e-05
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPP----------GFGFVEFEDRRDAEDAVRGFDGREI 100
T+E + D F+ + + A P F F+EF + A+ FDG
Sbjct: 14 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIF 72
Query: 101 NGRRVRVEMSNPQK 114
G+ +++ + +
Sbjct: 73 QGQSLKIRRPHDYQ 86
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 40.9 bits (95), Expect = 2e-05
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 47 STSSTKEDIEDAFSYYGP----IKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREING 102
S ++++E+ +G + G GF E E + F+G+ I
Sbjct: 27 PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 86
Query: 103 RRVRVEMSNPQKMR 116
+ P +
Sbjct: 87 PPGVSAPTEPLLCK 100
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 40.6 bits (94), Expect = 2e-05
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRG------F 95
S S +E + + +G +K V V + G F +F + A+ +
Sbjct: 17 SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEG 76
Query: 96 DGREINGRRVRVEMSNPQK 114
G +++GR+++V+++ +
Sbjct: 77 GGLKLDGRQLKVDLAVTRD 95
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 40.1 bits (93), Expect = 2e-05
Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPG------FGFVEFEDRRDAEDAV 92
I + L + + + ++F +G I+ + + F+ FE++ AE A+
Sbjct: 7 IMIR-NLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 65
Query: 93 RGFDGREINGRRVRVEMSNPQ 113
+ + + R + V +++ +
Sbjct: 66 Q-MNRSLLGNREISVSLADKK 85
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 39.7 bits (92), Expect = 3e-05
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPG-----FGFVEFEDRRDAEDAVRGFDGREIN 101
+ + + D F YG I+ + + + F FV F+D D+ D + +N
Sbjct: 11 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH-DSVDKIVIQKYHTVN 69
Query: 102 GRRVRVEMS 110
G V +
Sbjct: 70 GHNCEVRKA 78
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.1 bits (93), Expect = 3e-05
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPG-----FGFVEFEDRRDAEDAVRGFDGREIN 101
T+E I++ F FG+ EFED A+ + +
Sbjct: 24 PYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS-LNEESLG 82
Query: 102 GRRVRVEMSNPQKMRGRSNGRSG 124
+R+RV++++ + + S SG
Sbjct: 83 NKRIRVDVADQAQDK-DSGPSSG 104
Score = 25.8 bits (56), Expect = 2.9
Identities = 6/26 (23%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGRSG 199
+ +R+RV++++ + + S SG
Sbjct: 80 SLGNKRIRVDVADQAQDK-DSGPSSG 104
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.4 bits (91), Expect = 4e-05
Identities = 10/81 (12%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGF-- 95
V+++ + T+ ++ +G + N+ + F+E A V +
Sbjct: 10 VLHIRKL--PGEVTETEVIALGLPFGKVTNILM-LKGKNQAFLELATEEAAITMVNYYSA 66
Query: 96 DGREINGRRVRVEMSNPQKMR 116
+ + + ++ SN ++++
Sbjct: 67 VTPHLRNQPIYIQYSNHKELK 87
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 39.4 bits (91), Expect = 6e-05
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARN-----PPGFGFVEFEDRRDAEDAVRGFDGREIN 101
S TK D+ +N G V+F++ DA + R +++N
Sbjct: 17 PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-LHRKKLN 75
Query: 102 GRRVRVEMSNPQKMRG-RSNGRSGGDRG 128
GR V + + MR N + G G
Sbjct: 76 GREAFVHVVTLEDMREIEKNPPAQGKSG 103
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 38.6 bits (89), Expect = 7e-05
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPG----FGFVEFEDRRDAEDAVRGFDGREING 102
T +T +DI++ G + N+ + R FV F+ A+ V G++
Sbjct: 15 PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE 73
Query: 103 RRVRVEMSN 111
+ + +
Sbjct: 74 TDLLILFKD 82
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 39.0 bits (90), Expect = 7e-05
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
S + +D++D G + G G VE+ + D E A+R D +
Sbjct: 24 PPSGSWQDLKDHMREAGDVCYAD--VQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGE 81
Query: 107 VEMSNPQKMRGRSNGR 122
R
Sbjct: 82 TSYIRVYPERSSGPSS 97
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 38.3 bits (88), Expect = 8e-05
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPP---GFGFVEFEDRRDAEDAVRGFDGREINGRRVRV 107
+ + F + GPI +V VA + F +EF A A+ + + + V
Sbjct: 13 NQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 71
Query: 108 EM 109
Sbjct: 72 SH 73
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 36.8 bits (84), Expect = 3e-04
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVR 106
S + +D++D G + G G VEF + D AVR D +
Sbjct: 9 PPSGSWQDLKDHMREAGDVCYAD--VYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 66
Query: 107 VEMSNPQKMRGRSNGRS 123
+ RS
Sbjct: 67 TAYIRVKVDGPRSPSYG 83
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 36.6 bits (84), Expect = 5e-04
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWV---ARNPPGFGFVEFEDRRDAEDAVRGFDGREINGR 103
+T+ DI + FS P++ G VEF DA A+ D + R
Sbjct: 24 PYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82
Query: 104 RVRVEMSNPQKMRGRSNGRSG 124
V + +++ S SG
Sbjct: 83 YVELFLNSTAGTS-GSGPSSG 102
Score = 25.1 bits (54), Expect = 5.3
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 174 KINGRRVRVEMSNPQKMRGRSNGRSG 199
+ R V + +++ S SG
Sbjct: 78 NMQHRYVELFLNSTAGTS-GSGPSSG 102
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 34.8 bits (79), Expect = 0.002
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 38 VIYVS-IVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPP--------GFGFVEFEDRRDA 88
+++V + + F +G I V + + +V + DA
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 89 EDAVRGFDGREINGRRVRV 107
A++ + ++GR ++
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 34.5 bits (78), Expect = 0.002
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 39 IYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPG----FGFVEFEDRRDAEDAVRG 94
+++ + + + +++ A S ++ V G FG+V+FE D E A+
Sbjct: 16 LFIGNLNPNK--SVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE- 72
Query: 95 FDGREINGRRVRVEMSNP 112
G ++ G +++E
Sbjct: 73 LTGLKVFGNEIKLEKPKG 90
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency
virus type 1, different isolates [TaxId: 11676]}
Length = 42
Score = 32.9 bits (75), Expect = 0.002
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 218 DDKCYECGGRGHYARDCRSRRSGGG 242
+ KC+ CG GH AR+CR+ R G
Sbjct: 1 NVKCFNCGKEGHTARNCRAPRKKGC 25
Score = 32.5 bits (74), Expect = 0.003
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 143 DDKCYECGGRGHYARDCRSRRSGG 166
+ KC+ CG GH AR+CR+ R G
Sbjct: 1 NVKCFNCGKEGHTARNCRAPRKKG 24
Score = 28.7 bits (64), Expect = 0.090
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 134 RARGRPFNPDDKCYECGGRGHYARDCRSR 162
AR C++CG GH +DC R
Sbjct: 13 TARNCRAPRKKGCWKCGKEGHQMKDCTER 41
Score = 28.7 bits (64), Expect = 0.090
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 209 RARGRPFNPDDKCYECGGRGHYARDCRSR 237
AR C++CG GH +DC R
Sbjct: 13 TARNCRAPRKKGCWKCGKEGHQMKDCTER 41
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 34.2 bits (77), Expect = 0.004
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 38 VIYVSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDG 97
VI + + +I++ FS +G + V + VEF + +A A R
Sbjct: 12 VILAKNL--PAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAY 68
Query: 98 REINGRRVRVEMSNPQKMRGRSNGR 122
+ + + +E + +
Sbjct: 69 SKFHHVPLYLEWAPIGVFGAAPQKK 93
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 34.1 bits (77), Expect = 0.005
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 41 VSIVLCSTSSTKEDIEDAFSYYGPIKNVWVARNPP-----GFGFVEFEDRRDAEDAVRGF 95
V + + + + D F +++ P G GFVEF + D + A+
Sbjct: 21 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-R 79
Query: 96 DGREINGRRVRVEMSNPQKMR 116
+ + R ++V + M
Sbjct: 80 HKQYMGNRFIQVHPITKKGML 100
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 35.0 bits (79), Expect = 0.005
Identities = 22/173 (12%), Positives = 41/173 (23%), Gaps = 28/173 (16%)
Query: 47 STSSTKEDIEDAFSYYGPIKNVWVA-----RNPPGFGFVEFEDRRDAEDAVRGFDGREIN 101
S +T E + F +G + + V + GFGFV + + + A+ +
Sbjct: 15 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 74
Query: 102 GRRVRVEMSNPQKMRGRSNGRSGGDRGYRGSVRARGRPFNPDDKCYECGGRG-----HYA 156
R S + V G
Sbjct: 75 RVV----EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 130
Query: 157 RDCRSRRSGGSGRPELCK--------------INGRRVRVEMSNPQKMRGRSN 195
D S + G +NG V + ++ ++
Sbjct: 131 TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS 183
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine
leukemia virus, MoMLV [TaxId: 11801]}
Length = 40
Score = 30.7 bits (69), Expect = 0.017
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 135 ARGRPFNPDDKCYECGGRGHYARDCRSRRSGGSG 168
R R D+C C +GH+A+DC + G G
Sbjct: 2 ERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRG 35
Score = 30.4 bits (68), Expect = 0.019
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 210 ARGRPFNPDDKCYECGGRGHYARDCRSRRSGGGGRR 245
R R D+C C +GH+A+DC + G G R
Sbjct: 2 ERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPR 37
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency
virus type 2 [TaxId: 11709]}
Length = 29
Score = 29.8 bits (67), Expect = 0.028
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 145 KCYECGGRGHYARDCRSRRSGG 166
+C+ CG GH AR CR+ R G
Sbjct: 8 RCWNCGKEGHSARQCRAPRRQG 29
Score = 29.8 bits (67), Expect = 0.028
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 220 KCYECGGRGHYARDCRSRRSGG 241
+C+ CG GH AR CR+ R G
Sbjct: 8 RCWNCGKEGHSARQCRAPRRQG 29
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 29.9 bits (66), Expect = 0.084
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 51 TKEDIEDAFSYYGPIKNVWVARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMS 110
T +++ D S Y G FV + AE A+ F + R + V++
Sbjct: 11 TNQEVHDLLSDY--ELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQ 68
Query: 111 NPQKM 115
+
Sbjct: 69 PTDAL 73
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse
mammary tumor virus [TaxId: 11757]}
Length = 31
Score = 25.9 bits (57), Expect = 0.75
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 142 PDDKCYECGGRGHYARDCRSR 162
P C C H+ +C+S+
Sbjct: 1 PPGLCPRCKKGYHWKSECKSK 21
Score = 25.9 bits (57), Expect = 0.75
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 217 PDDKCYECGGRGHYARDCRSR 237
P C C H+ +C+S+
Sbjct: 1 PPGLCPRCKKGYHWKSECKSK 21
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse
mammary tumor virus [TaxId: 11757]}
Length = 26
Score = 25.4 bits (55), Expect = 0.88
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 146 CYECGGRGHYARDCR 160
C+ CG GH RDC+
Sbjct: 5 CFSCGKTGHIKRDCK 19
Score = 25.4 bits (55), Expect = 0.88
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 221 CYECGGRGHYARDCR 235
C+ CG GH RDC+
Sbjct: 5 CFSCGKTGHIKRDCK 19
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 27.8 bits (61), Expect = 2.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 82 FEDRRDAEDAVRGFDGR 98
F DR D E A RG R
Sbjct: 24 FADRADFERADRGLIRR 40
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 25.4 bits (56), Expect = 2.6
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 70 VARNPPGFGFVEFEDRRDAEDAVRGFDGREINGRRVRVEMSNPQKMRGRSNGR 122
V GFGF+E + ++ + ++G R+ + + + R +
Sbjct: 23 VKATEKGFGFLEVDAQKSYFIPPPQM-KKVMHGDRIIAVIHSE---KERESAE 71
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey
virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Length = 32
Score = 24.4 bits (53), Expect = 2.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 146 CYECGGRGHYARDCRSR 162
C C H+A +C+S+
Sbjct: 5 CPRCKRGKHWANECKSK 21
Score = 24.4 bits (53), Expect = 2.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 221 CYECGGRGHYARDCRSR 237
C C H+A +C+S+
Sbjct: 5 CPRCKRGKHWANECKSK 21
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein
DnaJ {Escherichia coli [TaxId: 562]}
Length = 79
Score = 24.3 bits (52), Expect = 7.2
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 122 RSGGDRGYRGSVRARGRPFNPDDKCYECGGRG 153
R G + +GR D C +C G G
Sbjct: 43 RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHG 74
Score = 24.3 bits (52), Expect = 7.2
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 197 RSGGDRGYRGSVRARGRPFNPDDKCYECGGRG 228
R G + +GR D C +C G G
Sbjct: 43 RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHG 74
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), insert domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 24.3 bits (52), Expect = 7.7
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 17/83 (20%)
Query: 146 CYECGGRGHYARDCRSRRSGGSGRPELCKINGRRVRVEMSNPQKMRGRSNGRSGGDRGYR 205
C EC GRG + G + C G + P R ++ G
Sbjct: 5 CKECEGRGG--------KKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDI 56
Query: 206 GSVRARGRPFNPDDKCYECGGRG 228
+P D+C C G+
Sbjct: 57 ---------IDPKDRCKSCNGKK 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.439
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,271,227
Number of extensions: 63615
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 128
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)