BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10129
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 112 bits (279), Expect = 8e-26, Method: Composition-based stats.
Identities = 56/115 (48%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
+R + + +S +EV E R + K+ A+IT +AL K E +K+ + L G+
Sbjct: 10 LRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKAL-KQAESLKERELPLFGIP 68
Query: 60 VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
+A+KDN G TTCASK+LENF+APYDATV+E+LK++GA+IVGKTN+DEFAMG
Sbjct: 69 IAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMG 123
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 99.0 bits (245), Expect = 7e-22, Method: Composition-based stats.
Identities = 52/115 (45%), Positives = 75/115 (65%), Gaps = 4/115 (3%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEVSK-LNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
IR + + +S EV + L R++E+ L AF+++ NE L + E V D L G+
Sbjct: 6 IRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSL--NERLLEEAEAV-DPGLPLAGLV 62
Query: 60 VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
VA+KDN TRG+ TT S++LENF+ PY+AT V +LK GA+++GKTN+DEF MG
Sbjct: 63 VAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMG 117
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 5 INKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEI----VKDE-KTMLQGV 58
I I +V + IEE + +F+ + K A+ KA E+ KD+ L G+
Sbjct: 15 IKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGI 74
Query: 59 TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
+ IKDN T G+ TTCASKMLE F+ Y++TV+EKL + A+++GK NMDEFAMG
Sbjct: 75 PMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMG 130
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 61/86 (70%), Gaps = 8/86 (9%)
Query: 29 LNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYD 88
+ AFI+V +N ++ K K G+ VAIKDN T G+ TTCAS++LEN+ + +D
Sbjct: 40 VKAFISVRENVSVEK--------KGKFWGIPVAIKDNILTLGMRTTCASRILENYESVFD 91
Query: 89 ATVVEKLKQSGAIIVGKTNMDEFAMG 114
ATVV+K+K++G ++VGK N+DEFAMG
Sbjct: 92 ATVVKKMKEAGFVVVGKANLDEFAMG 117
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 12/96 (12%)
Query: 23 IEEVSKLN----AFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASK 78
+E + +L+ AFI+V +N ++ ++K G+ VAIKDN T G TTCAS+
Sbjct: 31 LETIKRLDPHVKAFISVRENVSV--------EKKGKFWGIPVAIKDNILTLGXRTTCASR 82
Query: 79 MLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
+LEN+ + +DATVV+K K++G ++VGK N+DEFA G
Sbjct: 83 ILENYESVFDATVVKKXKEAGFVVVGKANLDEFAXG 118
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 58.9 bits (141), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 11 SIREVTEKCLSRIEEVSKLNAFITV-TKNEALCKATEIVKDEKT--MLQGVTVAIKDNFC 67
+I +V + RI +I + + E L +A + T L GV A+KDN
Sbjct: 48 TIEQVVTEAYDRITRYGDKAVWIALRPREEVLAEARALDASPATGKPLYGVPFAVKDNID 107
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLV 116
G+P + A + DATVV +L+ +GAI++GKTN+D+FA GLV
Sbjct: 108 VAGLPCSAACPAF-TYEPDRDATVVARLRAAGAIVLGKTNLDQFATGLV 155
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 49.3 bits (116), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 17 EKCLSRIEEVSKLNAFITV----TKNEALCKATEIVKDE-KTMLQGVTVAIKDNFCTRGI 71
E+ L R + NA + + EAL E+ + + + L G+ + +KD F +G+
Sbjct: 22 EEALERAKAFQDRNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGM 81
Query: 72 PTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLG 123
PT +K + P +A V +L+++GA++ KTN E A+G+ W G
Sbjct: 82 PTRAGTKAPLPPL-PEEARAVRRLREAGALLFAKTNXHEIALGITGENPWTG 132
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%)
Query: 45 TEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVG 104
T I +L G VAIKDN G+P S+ +E F DATVV +L +GA + G
Sbjct: 78 TSIPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAG 137
Query: 105 K 105
K
Sbjct: 138 K 138
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%)
Query: 45 TEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVG 104
T I +L G VAIKDN G+P S+ +E F DATVV +L +GA + G
Sbjct: 78 TSIPPTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAG 137
Query: 105 K 105
K
Sbjct: 138 K 138
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 55 LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
L G+ + +KDN + T+ S L+ F P DA +V +L+ +GA+++GKTN+ E+A
Sbjct: 78 LHGIPLLLKDNINAAPMATSAGSLALQGF-RPDDAYLVRRLRDAGAVVLGKTNLSEWA 134
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20 LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
L R E +L+ + ++ A +A E V+ +K+ L+G+ V IKD
Sbjct: 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
T +PT S++ + DA VV LK++GA I+GKT FA
Sbjct: 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20 LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
L R E +L+ + ++ A +A E V+ +K+ L+G+ V IKD
Sbjct: 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
T +PT S++ + DA VV LK++GA I+GKT FA
Sbjct: 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20 LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
L R E +L+ + ++ A +A E V+ +K+ L+G+ V IKD
Sbjct: 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
T +PT S++ + DA VV LK++GA I+GKT FA
Sbjct: 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20 LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
L R E +L+ + ++ A +A E V+ +K+ L+G+ V IKD
Sbjct: 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
T +PT S++ + DA VV LK++GA I+GKT FA
Sbjct: 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20 LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
L R E +L+ + ++ A +A E V+ +K+ L+G+ V IKD
Sbjct: 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
T +PT S++ + DA VV LK++GA I+GKT FA
Sbjct: 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20 LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
L R E +L+ + ++ A +A E V+ +K+ L+G+ V IKD
Sbjct: 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
T +PT S++ + DA VV LK++GA I+GKT FA
Sbjct: 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 20 LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
L R E +L+ + ++ A +A E V+ +K+ L+G+ V IKD
Sbjct: 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIID 66
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
T +PT S++ + DA VV LK++GA I+GKT FA
Sbjct: 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 43.5 bits (101), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 20 LSRIEEVSKLNAFITVTKNEALCKATE-----IVKDEKTM-------LQGVTVAIKDNFC 67
L R E +L+ + ++ A +A E V+ +K+ L+G+ V I D
Sbjct: 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIADIID 66
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
T +PT S++ + DA VV LK++GA I+GKT FA
Sbjct: 67 TANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 54 MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDE 110
+L GV V++K+ F +G +T + E + D VV+ LK GA+ TN+ +
Sbjct: 104 LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 160
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 54 MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDE 110
+L GV V++K+ F +G +T + E + D VV+ LK GA+ TN+ +
Sbjct: 123 LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 179
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 54 MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDE 110
+L GV V++K+ F +G +T + E + D VV+ LK GA+ TN+ +
Sbjct: 141 LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 197
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 54 MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDE 110
+L GV V++K+ F +G +T + E + D VV+ LK GA+ TN+ +
Sbjct: 127 LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 183
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 54 MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDE 110
+L GV V++K+ F +G +T + E + D VV+ LK GA+ TN+ +
Sbjct: 103 LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 159
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 54 MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDE 110
+L GV V++K+ F +G +T + E + D VV+ LK GA+ TN+ +
Sbjct: 141 LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 197
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 54 MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDE 110
+L GV V++K+ F +G +T + E + D VV+ LK GA+ TN+ +
Sbjct: 97 LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQ 153
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 5 INKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIK 63
+ IS E+ E ++ ++ V+ ++NA I + E + +E+ GV +K
Sbjct: 17 VRSGEISRTELLEATIAHVQAVNPEINAVI-IPLFEKARRESELASGP---FAGVPYLLK 72
Query: 64 D-NFCTRG-IPTTCASKMLEN-FIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
D ++G I T+ M E+ + A +DA V++++ +G +++GKTN E
Sbjct: 73 DLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMG 124
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 5 INKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIK 63
+ IS E+ E ++ ++ V+ ++NA I + E + +E+ GV +K
Sbjct: 17 VRSGEISRTELLEATIAHVQAVNPEINAVI-IPLFEKARRESELASGP---FAGVPYLLK 72
Query: 64 D-NFCTRG-IPTTCASKMLEN-FIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
D ++G I T+ M E+ + A +DA V++++ +G +++GKTN E
Sbjct: 73 DLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMG 124
>pdb|3MLE|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|B Chain B, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|C Chain C, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|D Chain D, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|E Chain E, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3MLE|F Chain F, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Cocrystallized With Atp
pdb|3QXC|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Atp
pdb|3QXH|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Adp And
8-Aminocaprylic Acid
pdb|3QXJ|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Gtp
pdb|3QXS|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Anp
pdb|3QXX|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Gdp And
8-Aminocaprylic Acid
pdb|3QY0|A Chain A, Crystal Structure Of Dethiobiotin Synthetase (Biod) From
Helicobacter Pylori Complexed With Gdp
Length = 242
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 71 IPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWL 122
I T ++ L NF YD +VE I + NM +FA+ L ++L +
Sbjct: 116 IDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLI 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,403,419
Number of Sequences: 62578
Number of extensions: 109845
Number of successful extensions: 322
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 37
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)