Query psy10129
Match_columns 135
No_of_seqs 198 out of 1185
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:36:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00132 gatA glutamyl-tRNA(G 100.0 3.9E-43 8.5E-48 286.9 14.4 133 1-133 1-134 (460)
2 PRK07042 amidase; Provisional 100.0 4.6E-43 1E-47 286.8 13.9 134 1-134 12-151 (464)
3 TIGR02715 amido_AtzE amidohydr 100.0 6.2E-43 1.4E-47 285.3 14.0 134 1-134 5-145 (452)
4 PRK09201 amidase; Provisional 100.0 7.3E-43 1.6E-47 285.8 13.7 133 1-133 12-151 (465)
5 PRK07487 amidase; Provisional 100.0 9.2E-43 2E-47 285.4 13.8 134 1-134 13-152 (469)
6 PRK06170 amidase; Provisional 100.0 1.4E-42 3E-47 285.6 14.2 133 1-133 17-154 (490)
7 PRK07869 amidase; Provisional 100.0 1.4E-42 2.9E-47 284.3 13.6 132 1-133 20-152 (468)
8 PRK06169 putative amidase; Pro 100.0 4.2E-42 9.1E-47 281.3 14.1 134 1-134 12-152 (466)
9 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 2.8E-42 6.1E-47 282.7 12.8 133 1-133 12-152 (475)
10 PRK06529 amidase; Provisional 100.0 4.1E-42 8.9E-47 282.4 13.4 132 1-133 9-142 (482)
11 PRK07486 amidase; Provisional 100.0 7.7E-42 1.7E-46 280.9 13.8 134 1-134 17-157 (484)
12 PRK12470 amidase; Provisional 100.0 1.2E-41 2.6E-46 278.5 14.1 132 1-133 14-150 (462)
13 PRK06102 hypothetical protein; 100.0 1.6E-41 3.5E-46 277.0 14.0 131 1-131 11-147 (452)
14 PRK00012 gatA aspartyl/glutamy 100.0 2E-41 4.4E-46 276.7 13.0 130 5-134 1-135 (459)
15 PRK07488 indole acetimide hydr 100.0 2.9E-41 6.4E-46 276.7 13.7 133 1-133 16-152 (472)
16 PRK07056 amidase; Provisional 100.0 4.6E-41 1E-45 274.5 13.9 130 1-130 11-148 (454)
17 PRK06061 amidase; Provisional 100.0 5.8E-41 1.3E-45 275.7 14.3 133 1-134 23-160 (483)
18 PRK08137 amidase; Provisional 100.0 4.1E-40 8.9E-45 271.4 12.7 133 1-134 11-158 (497)
19 PRK08186 allophanate hydrolase 100.0 6.7E-40 1.5E-44 275.0 13.5 132 1-133 12-146 (600)
20 PRK06828 amidase; Provisional 100.0 2.3E-39 4.9E-44 266.6 12.5 131 1-132 18-163 (491)
21 PRK11910 amidase; Provisional 100.0 3.9E-39 8.4E-44 269.2 13.8 132 1-133 170-313 (615)
22 PRK06707 amidase; Provisional 100.0 6.1E-39 1.3E-43 266.1 13.5 132 1-133 76-221 (536)
23 PF01425 Amidase: Amidase; In 100.0 1.9E-39 4.1E-44 259.3 9.7 120 14-133 1-126 (441)
24 PRK06565 amidase; Validated 100.0 1.2E-38 2.7E-43 264.3 13.3 131 1-133 12-153 (566)
25 PRK05962 amidase; Validated 100.0 3.1E-38 6.8E-43 255.9 11.7 118 17-134 2-126 (424)
26 PRK07235 amidase; Provisional 100.0 1.5E-36 3.3E-41 250.5 9.1 131 2-133 31-166 (502)
27 TIGR02713 allophanate_hyd allo 100.0 3.3E-33 7.1E-38 233.0 10.3 103 30-133 2-109 (561)
28 PRK07139 amidase; Provisional 100.0 5.7E-32 1.2E-36 220.3 9.7 110 15-134 7-116 (439)
29 KOG1211|consensus 100.0 1.2E-31 2.6E-36 218.7 10.1 130 5-134 27-162 (506)
30 PRK08310 amidase; Provisional 100.0 1.1E-30 2.5E-35 210.2 7.9 101 27-134 5-107 (395)
31 KOG1212|consensus 100.0 3.1E-30 6.8E-35 212.3 9.5 133 1-133 60-198 (560)
32 PLN02722 indole-3-acetamide am 100.0 1.6E-30 3.4E-35 210.9 7.3 101 27-133 5-107 (422)
33 COG0141 HisD Histidinol dehydr 69.6 12 0.00026 31.1 5.1 103 5-109 235-350 (425)
34 PRK13770 histidinol dehydrogen 62.4 8.7 0.00019 31.8 3.1 106 6-112 230-347 (416)
35 TIGR01698 PUNP purine nucleoti 60.7 11 0.00024 28.7 3.3 28 85-112 158-185 (237)
36 PRK00877 hisD bifunctional his 54.5 16 0.00035 30.4 3.4 105 6-111 240-356 (425)
37 cd06572 Histidinol_dh Histidin 52.6 16 0.00036 29.9 3.2 101 6-107 213-325 (390)
38 PLN02926 histidinol dehydrogen 52.5 17 0.00037 30.2 3.3 103 6-109 244-357 (431)
39 PRK12447 histidinol dehydrogen 51.9 17 0.00038 30.1 3.2 106 6-112 235-352 (426)
40 PF00815 Histidinol_dh: Histid 49.7 6.5 0.00014 32.5 0.4 103 6-111 227-342 (412)
41 TIGR00069 hisD histidinol dehy 48.8 24 0.00053 29.0 3.6 106 6-112 209-326 (393)
42 PRK09485 mmuM homocysteine met 47.6 66 0.0014 25.2 5.8 66 28-104 219-285 (304)
43 PRK07823 5'-methylthioadenosin 41.0 28 0.0006 27.0 2.7 26 87-112 162-187 (264)
44 COG0005 Pnp Purine nucleoside 39.6 30 0.00066 26.9 2.7 27 87-113 184-210 (262)
45 PF05240 APOBEC_C: APOBEC-like 39.4 15 0.00032 21.7 0.8 40 92-132 8-47 (55)
46 PRK07432 5'-methylthioadenosin 37.9 31 0.00067 27.2 2.6 26 87-112 170-195 (290)
47 PRK08931 5'-methylthioadenosin 35.0 38 0.00082 26.7 2.6 26 87-112 167-192 (289)
48 PRK08564 5'-methylthioadenosin 33.0 42 0.00091 26.0 2.6 26 87-112 171-197 (267)
49 PLN00105 malate/L-lactate dehy 30.6 88 0.0019 25.0 4.1 39 89-129 111-149 (330)
50 PRK00768 nadE NAD synthetase; 29.7 32 0.0007 26.7 1.5 33 97-129 150-182 (268)
51 PRK13769 histidinol dehydrogen 29.3 1.4E+02 0.003 24.5 5.0 90 10-103 207-299 (368)
52 COG0461 PyrE Orotate phosphori 28.7 42 0.00091 25.0 1.9 16 90-105 130-145 (201)
53 TIGR02606 antidote_CC2985 puta 28.2 92 0.002 18.9 3.1 25 2-26 15-40 (69)
54 PRK13260 2,3-diketo-L-gulonate 27.8 1.1E+02 0.0023 24.6 4.1 39 89-129 121-159 (332)
55 PRK10098 putative dehydrogenas 27.4 1.1E+02 0.0023 24.8 4.1 22 88-109 124-145 (350)
56 TIGR03175 AllD ureidoglycolate 24.9 1.3E+02 0.0028 24.3 4.1 40 88-129 120-159 (349)
57 PF14468 DUF4427: Protein of u 24.9 62 0.0013 22.4 2.0 44 60-106 21-64 (132)
58 PF09851 SHOCT: Short C-termin 24.3 84 0.0018 15.9 2.0 17 1-17 8-24 (31)
59 KOG3079|consensus 24.3 1.8E+02 0.0039 21.7 4.4 51 2-52 59-110 (195)
60 KOG1212|consensus 23.4 91 0.002 27.0 3.1 72 54-125 162-247 (560)
61 KOG1592|consensus 23.2 91 0.002 25.0 2.9 28 3-31 36-63 (326)
62 COG0171 NadE NAD synthase [Coe 23.2 48 0.001 25.8 1.3 33 96-128 134-166 (268)
63 PRK15025 ureidoglycolate dehyd 22.9 1.5E+02 0.0033 23.9 4.2 40 88-129 120-159 (349)
64 PF06591 Phage_T4_Ndd: T4-like 22.0 84 0.0018 22.3 2.2 24 92-115 6-29 (152)
65 PRK09562 mazG nucleoside triph 21.9 1.6E+02 0.0035 22.8 4.0 56 7-62 81-141 (262)
66 PRK00876 nadE NAD synthetase; 21.4 64 0.0014 25.8 1.8 33 97-129 187-219 (326)
67 PRK13980 NAD synthetase; Provi 21.3 1.4E+02 0.003 22.8 3.5 38 93-130 126-163 (265)
68 COG0761 lytB 4-Hydroxy-3-methy 21.3 99 0.0021 24.5 2.7 20 85-104 40-59 (294)
69 PF02540 NAD_synthase: NAD syn 21.3 38 0.00083 25.7 0.5 34 96-129 118-151 (242)
70 PLN02489 homocysteine S-methyl 20.6 3E+02 0.0064 22.0 5.4 17 88-104 298-314 (335)
71 PRK09136 5'-methylthioadenosin 20.3 78 0.0017 24.1 2.0 27 87-113 165-191 (245)
72 COG0646 MetH Methionine syntha 20.2 2.5E+02 0.0055 22.4 4.8 83 12-104 205-292 (311)
No 1
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=3.9e-43 Score=286.90 Aligned_cols=133 Identities=50% Similarity=0.711 Sum_probs=128.8
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM 79 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~ 79 (135)
|++++++|++||+||++++++||+++ +.+|||+++++|+|+++|+++|.+++.||+||||+|||+|+++|++||+||..
T Consensus 1 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~ 80 (460)
T TIGR00132 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKI 80 (460)
T ss_pred ChhHHhcCCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChh
Confidence 68899999999999999999999999 99999999999999999999998766799999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+.++++.+||++|++|+++|||++||||||||+++.+|.|++||+|+||||+.+
T Consensus 81 ~~~~~~~~dA~vV~~L~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~ 134 (460)
T TIGR00132 81 LENYIPPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDR 134 (460)
T ss_pred hccCCCCCchHHHHHHHHCCCEEEEEechhHHhcCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999865
No 2
>PRK07042 amidase; Provisional
Probab=100.00 E-value=4.6e-43 Score=286.84 Aligned_cols=134 Identities=27% Similarity=0.288 Sum_probs=127.5
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt 74 (135)
|++++++|++|++|+++++++||++. +.+|+|++++.|.|+++|+++|.++++ ||+||||+|||+|+++|++||
T Consensus 12 l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt 91 (464)
T PRK07042 12 LLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIATRGVPVP 91 (464)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcccccCCcccC
Confidence 46789999999999999999999999 999999999999999999999976543 999999999999999999999
Q ss_pred cccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
+||+.+.++++.+||++|++|+++|||++||||||||+|+.+|.|++||+|+||||+.+.
T Consensus 92 ~Gs~~~~~~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~ 151 (464)
T PRK07042 92 LGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQN 151 (464)
T ss_pred CCChhhcCCCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999998763
No 3
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=6.2e-43 Score=285.30 Aligned_cols=134 Identities=35% Similarity=0.474 Sum_probs=127.1
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt 74 (135)
|+++|++|++|++|+++++++||+++ +.+|+|+++++|+|+++|+++|.++++ ||+||||+|||+|+++|++||
T Consensus 5 l~~~l~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt 84 (452)
T TIGR02715 5 IAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTL 84 (452)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeC
Confidence 47899999999999999999999999 999999999999999999999976543 899999999999999999999
Q ss_pred cccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 75 CASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 75 ~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
+||+.+.++++ .+||++|+||+++|||++||||||||+|+.++.|++||+|+||||+.+.
T Consensus 85 ~Gs~~~~~~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~ 145 (452)
T TIGR02715 85 AGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRI 145 (452)
T ss_pred cCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999987 7999999999999999999999999999999999999999999998763
No 4
>PRK09201 amidase; Provisional
Probab=100.00 E-value=7.3e-43 Score=285.80 Aligned_cols=133 Identities=33% Similarity=0.449 Sum_probs=126.8
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt 74 (135)
|+++|++|++|++|+++++++||+++ +.+|||+++++|+|+++|+++|.++++ ||+||||+|||+|+++|++||
T Consensus 12 l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt 91 (465)
T PRK09201 12 IAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFDVAGLTTL 91 (465)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccccCCcccC
Confidence 46889999999999999999999999 999999999999999999999986543 999999999999999999999
Q ss_pred cccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 75 CASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 75 ~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+||+.+.++++ .+||++|++|+++|||++||||||||+++.++.|++||+|+||||+.+
T Consensus 92 ~Gs~~~~~~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~ 151 (465)
T PRK09201 92 AGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTR 151 (465)
T ss_pred cCChhhccCCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCC
Confidence 99999999988 699999999999999999999999999999999999999999999875
No 5
>PRK07487 amidase; Provisional
Probab=100.00 E-value=9.2e-43 Score=285.45 Aligned_cols=134 Identities=28% Similarity=0.400 Sum_probs=127.6
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt 74 (135)
|+++|++|++|++|+++++++||++. +.+|+|+++++|+|+++|+++|.+++. ||+||||+|||+|+++|++||
T Consensus 13 l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt 92 (469)
T PRK07487 13 LAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVNVDQAGFATT 92 (469)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEecccccCCCccC
Confidence 46789999999999999999999999 999999999999999999999976532 999999999999999999999
Q ss_pred cccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
+||+.+.++++.+||++|+||+++|||++||||||||+++.++.|++||+|+||||+.+.
T Consensus 93 ~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~ 152 (469)
T PRK07487 93 NGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLT 152 (469)
T ss_pred cchHHhcCCCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999998763
No 6
>PRK06170 amidase; Provisional
Probab=100.00 E-value=1.4e-42 Score=285.61 Aligned_cols=133 Identities=26% Similarity=0.320 Sum_probs=127.3
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTC 75 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~ 75 (135)
|++++++|++|++|+++++++||+++ +.+|+|+++++|+|+++|+++|.+++. ||+||||+|||+|+++|++||+
T Consensus 17 l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~gpL~GvPv~VKD~~~v~G~~tt~ 96 (490)
T PRK06170 17 LAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGIPVTVKESFNVAGLPTTW 96 (490)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCCCCCcCCceEEEecccccCCcccCC
Confidence 46889999999999999999999999 999999999999999999999986543 9999999999999999999999
Q ss_pred ccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 76 ASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 76 Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
||+.+.++++.+||++|+||+++|||++||||||||+++.+|.|++||+|+||||+.+
T Consensus 97 Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~ 154 (490)
T PRK06170 97 GFPDLRDYVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLAR 154 (490)
T ss_pred CChhhcCCCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999865
No 7
>PRK07869 amidase; Provisional
Probab=100.00 E-value=1.4e-42 Score=284.30 Aligned_cols=132 Identities=27% Similarity=0.279 Sum_probs=125.6
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM 79 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~ 79 (135)
|++++++|++|++|+++++++||+++ +.+|||+++++|+|+++|+++|.. ..||+||||+|||||+++|++||+||+.
T Consensus 20 l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~-~gpL~GvPi~vKD~~~v~G~~tt~Gs~~ 98 (468)
T PRK07869 20 LAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQ-GGFFSGVPTFIKDNVDVAGLPTMHGSDA 98 (468)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCC-CCCcCCCeEEEecCcccCCcccCcccHh
Confidence 46789999999999999999999999 999999999999999999998742 3499999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus 99 ~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~ 152 (468)
T PRK07869 99 WTPRPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDY 152 (468)
T ss_pred hcCCCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999875
No 8
>PRK06169 putative amidase; Provisional
Probab=100.00 E-value=4.2e-42 Score=281.33 Aligned_cols=134 Identities=31% Similarity=0.371 Sum_probs=126.0
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt 74 (135)
|+++|++|++|++|+++++++||++. +.+|+|+++++|+|+++|+++|++++. ||+||||+|||+|+++|++||
T Consensus 12 l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt 91 (466)
T PRK06169 12 LLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKDIFLTRGWPTL 91 (466)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecccccCCcccC
Confidence 46789999999999999999999999 999999999999999999999976532 899999999999999999999
Q ss_pred cccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 75 CASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 75 ~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
+||+.+.++.+ .+||++|++|+++|||++||||||||+|+.++.|++||+|+||||+.+.
T Consensus 92 ~Gs~~~~~~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~ 152 (466)
T PRK06169 92 RGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLT 152 (466)
T ss_pred ccChhhccCCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCC
Confidence 99999986766 7999999999999999999999999999999999999999999998763
No 9
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-42 Score=282.73 Aligned_cols=133 Identities=41% Similarity=0.589 Sum_probs=126.4
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHH--HHHhhhhhhCC-----CCCcceEeeeccccCCCcc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALC--KATEIVKDEKT-----MLQGVTVAIKDNFCTRGIP 72 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~--~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~ 72 (135)
|+++++++++|++|+++++++||++. +.+|+|+.+..|.++. +|+++|++.+. ||+||||+|||||+++|+|
T Consensus 12 l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKDn~~~~G~~ 91 (475)
T COG0154 12 LAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDNIDTAGLP 91 (475)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEeeccccCCCc
Confidence 46789999999999999999999999 9999999999998865 99999988753 8999999999999999999
Q ss_pred cccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 73 TTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 73 tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
||+||+.+.+++|.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||..+
T Consensus 92 Tt~gS~~l~~~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~ 152 (475)
T COG0154 92 TTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLER 152 (475)
T ss_pred cCccChhhccCCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999765
No 10
>PRK06529 amidase; Provisional
Probab=100.00 E-value=4.1e-42 Score=282.36 Aligned_cols=132 Identities=21% Similarity=0.273 Sum_probs=125.7
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeecc-ccCCCcccccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDN-FCTRGIPTTCASK 78 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~-~~v~G~~tt~Gs~ 78 (135)
|++++++|++|++|+++++++||++. +.+|+|+.+++|+|+++|+++|... .||+||||+|||| |+++|++||+||+
T Consensus 9 l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~-~PL~GvPi~vKD~~~~v~G~~tt~Gs~ 87 (482)
T PRK06529 9 MAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSG-KPFAGVPIFLKDLGQELKGQLSTSGSR 87 (482)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccC-CCcCCCeEEEecCCcccCCCccCcchH
Confidence 46789999999999999999999999 9999999999999999999988532 4999999999998 7999999999999
Q ss_pred cccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 79 MLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 79 ~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
.+.++++.+||++|+|||++|||++||||||||+++.+|.|++||+|+||||+.+
T Consensus 88 ~~~~~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~ 142 (482)
T PRK06529 88 LFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSR 142 (482)
T ss_pred HhcCCCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999875
No 11
>PRK07486 amidase; Provisional
Probab=100.00 E-value=7.7e-42 Score=280.88 Aligned_cols=134 Identities=31% Similarity=0.367 Sum_probs=125.7
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecCh-HHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTK-NEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~-~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~t 73 (135)
|++++++|++|++|+++++++||+++ +.+|+|++++. +.++++|+++|.++++ ||+||||+|||+|+++|++|
T Consensus 17 l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~t 96 (484)
T PRK07486 17 LSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPKDLAPTKGIRT 96 (484)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEEEecccccCCcCc
Confidence 46789999999999999999999999 99999999977 4469999999976533 99999999999999999999
Q ss_pred ccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
|+||+.+.++++.+||++|+||+++|||++||||||||+++.++.|++||+|+||||+.+.
T Consensus 97 t~Gs~~~~~~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~ 157 (484)
T PRK07486 97 TLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRS 157 (484)
T ss_pred ccccHhhCCCCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998763
No 12
>PRK12470 amidase; Provisional
Probab=100.00 E-value=1.2e-41 Score=278.47 Aligned_cols=132 Identities=29% Similarity=0.294 Sum_probs=124.9
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTC 75 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~ 75 (135)
|++++++|++|++|+++++++||++. +.+|+|+.+++|+|+++|+++|.++.. ||+||||+|||+|+++|++||+
T Consensus 14 l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~pL~GvPi~vKD~~~v~G~~tt~ 93 (462)
T PRK12470 14 QARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERLPLLGVPIAIKDDVDVAGEVTTY 93 (462)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCCCcCCCeEEEecCcccCCceeCC
Confidence 46789999999999999999999999 999999999999999999999976533 8999999999999999999999
Q ss_pred ccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 76 ASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 76 Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
||+.+ ++++.+||++|+||+++|||++||||||||+++.+|.|++||+|+||||+.+
T Consensus 94 Gs~~~-~~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~ 150 (462)
T PRK12470 94 GSAGH-GPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNR 150 (462)
T ss_pred CCccc-CCCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCC
Confidence 99985 5888999999999999999999999999999999999999999999999875
No 13
>PRK06102 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=277.04 Aligned_cols=131 Identities=27% Similarity=0.352 Sum_probs=123.4
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhhcCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTTC 75 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt~ 75 (135)
|+++|++|++||+|+++++++||+++..+|+|+.+++|.|+++|+++|.+++. ||+||||+|||+|+++|++||+
T Consensus 11 l~~~l~~g~~s~~ev~~~~l~ri~~~~~~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~ 90 (452)
T PRK06102 11 LAVLIQSGALDPVQVAEQALDAIASYADQAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVAGSVTTA 90 (452)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhhCCCCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCCccCc
Confidence 46889999999999999999999988338999999999999999999987542 9999999999999999999999
Q ss_pred ccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCc
Q psy10129 76 ASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLC 131 (135)
Q Consensus 76 Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~ 131 (135)
||+.+.++++ .+||++|+||+++|||++||||||||+++.+|.|++||+|+||||.
T Consensus 91 Gs~~~~~~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~ 147 (452)
T PRK06102 91 GSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRST 147 (452)
T ss_pred CChhhccCCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCC
Confidence 9999999887 7999999999999999999999999999999999999999999986
No 14
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=2e-41 Score=276.73 Aligned_cols=130 Identities=53% Similarity=0.726 Sum_probs=124.0
Q ss_pred HHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhC----CCCCcceEeeeccccCCCccccccccc
Q psy10129 5 INKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEK----TMLQGVTVAIKDNFCTRGIPTTCASKM 79 (135)
Q Consensus 5 l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~----~pL~GvP~~vKD~~~v~G~~tt~Gs~~ 79 (135)
|++|++|++|+++++++||++. +.+|+|+++++|+|+++|+++|.+++ .||+||||+|||+|+++|++||+||..
T Consensus 1 i~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~ 80 (459)
T PRK00012 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGEAGPLAGIPIAIKDNICTKGIRTTCASKI 80 (459)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCCCCccCCeEEEEecccccCCCccCccCHh
Confidence 5789999999999999999999 99999999999999999999997653 399999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
+.++++.+||++|+||+++|||++||||||||+++.++.|++||+|+||||+.+.
T Consensus 81 ~~~~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~ 135 (459)
T PRK00012 81 LENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERV 135 (459)
T ss_pred hccCCCCcchHHHHHHHHCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999998763
No 15
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=2.9e-41 Score=276.72 Aligned_cols=133 Identities=34% Similarity=0.452 Sum_probs=125.9
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhhcCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCcccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTCA 76 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~G 76 (135)
|++++++|++|++|+++++++||++.+.+|+|+.+++|+|+++|+++|.+++. +|+||||+|||+|+++|++||+|
T Consensus 16 l~~~l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gL~GvPi~vKD~~~v~G~~tt~G 95 (472)
T PRK07488 16 AAAALRSGRLSCLELVEALLARAAALAPLNAFTTVDAEGALAAARRIDAQRAAGAALLLAGVPIVIKDNINTAGMPTTAG 95 (472)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCcCCEEEEcCHHHHHHHHHHHHHHHhcCCCCCcCceEEEEEcccccCCCccCcC
Confidence 46889999999999999999999988569999999999999999999987543 39999999999999999999999
Q ss_pred cccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 77 SKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 77 s~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
|+.+.++++.+||++|+||+++|||++||||||||+|+.++.|++||+|+||||+.+
T Consensus 96 s~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~ 152 (472)
T PRK07488 96 TPALLGFVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPAR 152 (472)
T ss_pred ChhhccCCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999865
No 16
>PRK07056 amidase; Provisional
Probab=100.00 E-value=4.6e-41 Score=274.47 Aligned_cols=130 Identities=25% Similarity=0.335 Sum_probs=122.8
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-c-CcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-S-KLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~-~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~t 73 (135)
|++++++|++|++|+++++++||+++ + .+|+|+++++|.|+++|+++|.+.+. ||+||||+|||+|+++|++|
T Consensus 11 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~t 90 (454)
T PRK07056 11 LAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVAGQVT 90 (454)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccCCCcc
Confidence 46889999999999999999999998 6 49999999999999999999976533 99999999999999999999
Q ss_pred ccccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCC
Q psy10129 74 TCASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKL 130 (135)
Q Consensus 74 t~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~ 130 (135)
|+||..+.++++ .+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||
T Consensus 91 t~Gs~~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~ 148 (454)
T PRK07056 91 RAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWR 148 (454)
T ss_pred CCCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCC
Confidence 999999999988 699999999999999999999999999999999999999999993
No 17
>PRK06061 amidase; Provisional
Probab=100.00 E-value=5.8e-41 Score=275.68 Aligned_cols=133 Identities=29% Similarity=0.302 Sum_probs=122.9
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTC 75 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~ 75 (135)
|+++|++|++|++||++++++||++. +.+|+|+++++|+|+++|+++|+++++ ||+||||+|||+|+++|++||+
T Consensus 23 l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~pL~GvPv~vKD~~~v~G~~tt~ 102 (483)
T PRK06061 23 QAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAVKDDVDVAGVPTAF 102 (483)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEcccccCCceecC
Confidence 46889999999999999999999999 999999999999999999999987643 9999999999999999999999
Q ss_pred ccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 76 ASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 76 Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
||... ..++.+||++|++|+++|||++||||||||+|+.++.|++||+|+||||+.+.
T Consensus 103 Gs~~~-~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~ 160 (483)
T PRK06061 103 GTAGE-VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHT 160 (483)
T ss_pred CCccc-CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCC
Confidence 99842 23346999999999999999999999999999999999999999999998763
No 18
>PRK08137 amidase; Provisional
Probab=100.00 E-value=4.1e-40 Score=271.38 Aligned_cols=133 Identities=28% Similarity=0.342 Sum_probs=122.2
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh----cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCC-C
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV----SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTR-G 70 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~----~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~-G 70 (135)
|+++|++|++||+|+++++++||+++ +.+|+|+.++.+ |+++|+++|.+++. ||+||||+|||+|+++ |
T Consensus 11 l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~~G 89 (497)
T PRK08137 11 LQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLKDNIDAADP 89 (497)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeeecceeecCC
Confidence 46789999999999999999999975 579999999886 99999999976543 9999999999999999 9
Q ss_pred cccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCcccccccc-----ccCCCCCCcCCCCCCcccC
Q psy10129 71 IPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGL-----VVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 71 ~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~-----~~~n~~~G~~~NP~~~~~~ 134 (135)
++||+||..+.++++.+||++|++|+++|||++||||||||+++. ++.|++||+|+||||+.+.
T Consensus 90 ~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~ 158 (497)
T PRK08137 90 MPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRS 158 (497)
T ss_pred CCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999644 4589999999999998764
No 19
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00 E-value=6.7e-40 Score=274.98 Aligned_cols=132 Identities=32% Similarity=0.436 Sum_probs=123.4
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhhcCcCeEEecCh-HHHHHHHHhhhhhhCC--CCCcceEeeeccccCCCccccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTK-NEALCKATEIVKDEKT--MLQGVTVAIKDNFCTRGIPTTCAS 77 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~-~~a~~~A~~~d~~~~~--pL~GvP~~vKD~~~v~G~~tt~Gs 77 (135)
|++++++|++|++|+++++++||++.+.+|+|+.... ++++++|+++|.+... ||+||||+|||||+++|++||+||
T Consensus 12 l~~~~~~g~~t~~evv~a~l~ri~~~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pTTaGs 91 (600)
T PRK08186 12 LRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAAC 91 (600)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCcccCcCC
Confidence 4688999999999999999999998778999999987 6799999999976533 999999999999999999999999
Q ss_pred ccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 78 KMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 78 ~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+.+. +.|.+||++|+||+++|||++||||||||+++.++.|+.||+|+||||+.+
T Consensus 92 ~~~~-~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~ 146 (600)
T PRK08186 92 PAFA-YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEY 146 (600)
T ss_pred HhHc-CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCC
Confidence 9986 788999999999999999999999999999999999999999999999865
No 20
>PRK06828 amidase; Provisional
Probab=100.00 E-value=2.3e-39 Score=266.65 Aligned_cols=131 Identities=28% Similarity=0.363 Sum_probs=121.7
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-c---CcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCC-
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-S---KLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRG- 70 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~---~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G- 70 (135)
|++++++|++||+|+++++++||+++ + .+|+|+.++++ ++++|+++|.+++. ||+||||+|||+|+++|
T Consensus 18 l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~gg 96 (491)
T PRK06828 18 IQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIETNDS 96 (491)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEEecCC
Confidence 46789999999999999999999988 4 79999999988 89999999976542 99999999999999996
Q ss_pred cccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccc-----cccCCCCCCcCCCCCCcc
Q psy10129 71 IPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG-----LVVRILWLGLQSEFKLCL 132 (135)
Q Consensus 71 ~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~-----~~~~n~~~G~~~NP~~~~ 132 (135)
++||+||+.+.++++.+||++|++|+++|||++||||||||+++ .++.|++||+|+||||+.
T Consensus 97 ~~tt~Gs~~~~~~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~ 163 (491)
T PRK06828 97 MHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTG 163 (491)
T ss_pred CcCCcCcHHHcCCCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCc
Confidence 99999999999999999999999999999999999999999975 588999999999999984
No 21
>PRK11910 amidase; Provisional
Probab=100.00 E-value=3.9e-39 Score=269.19 Aligned_cols=132 Identities=31% Similarity=0.441 Sum_probs=122.4
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-c---CcCeEEecChHHHHHHHHhhhhhhCC---CCCcceEeeeccccCCCccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-S---KLNAFITVTKNEALCKATEIVKDEKT---MLQGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~---~lna~~~~~~~~a~~~A~~~d~~~~~---pL~GvP~~vKD~~~v~G~~t 73 (135)
|++++++|++|++|++++|++||+++ + .+|||++++++ |+++|+++|.++.. ||+||||+|||||+++|++|
T Consensus 170 L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~VKDni~t~G~pT 248 (615)
T PRK11910 170 LQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLLKDNIGTKELPT 248 (615)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEEEcCcccCCCcc
Confidence 46799999999999999999999998 6 79999999996 89999999976433 99999999999999999999
Q ss_pred ccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccc-----cccCCCCCCcCCCCCCccc
Q psy10129 74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG-----LVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~-----~~~~n~~~G~~~NP~~~~~ 133 (135)
|+||..+.++++.+||++|++||++|||++|||||+||+++ ..+.|++||+|+||||..+
T Consensus 249 TaGS~al~~~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r 313 (615)
T PRK11910 249 SAGTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNL 313 (615)
T ss_pred CcccHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCC
Confidence 99999999999999999999999999999999999999977 3467889999999999864
No 22
>PRK06707 amidase; Provisional
Probab=100.00 E-value=6.1e-39 Score=266.15 Aligned_cols=132 Identities=30% Similarity=0.405 Sum_probs=121.4
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-c---CcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccC-CCc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-S---KLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCT-RGI 71 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~---~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v-~G~ 71 (135)
|++++++|++|++|+++.|++||+++ + .+|+|++++++ |+++|+++|.++++ ||+||||+|||||++ +|+
T Consensus 76 l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD~i~~~~g~ 154 (536)
T PRK06707 76 LQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKDNVQTAKVM 154 (536)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEecccccCCCC
Confidence 46789999999999999999999988 4 59999999887 99999999976432 999999999999999 999
Q ss_pred ccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccc-----cccCCCCCCcCCCCCCccc
Q psy10129 72 PTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG-----LVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 72 ~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~-----~~~~n~~~G~~~NP~~~~~ 133 (135)
|||+||..+.++++.+||++|++|+++|||++|||||+||++. .++.|++||+|+||||+.+
T Consensus 155 ~TtaGs~~l~~~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~ 221 (536)
T PRK06707 155 PTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIK 221 (536)
T ss_pred ccCcccHhhccCCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCccc
Confidence 9999999999999999999999999999999999999999963 5778899999999999843
No 23
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=1.9e-39 Score=259.30 Aligned_cols=120 Identities=39% Similarity=0.520 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccccccccccCCCCCC
Q psy10129 14 EVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPY 87 (135)
Q Consensus 14 ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~ 87 (135)
||+++|++||+++ +.+||+++.+.++|+++|+++|+++++ ||+||||+|||+|+++|++||+||..+.+.++.+
T Consensus 1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~~~~~~ 80 (441)
T PF01425_consen 1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALADNPPTE 80 (441)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTTBBBSS
T ss_pred CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccCcCccc
Confidence 7999999999999 999999999999999999999988742 9999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
||++|++|+++|||++||||||||+++.++.|+.||+|+||||+.+
T Consensus 81 ~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~ 126 (441)
T PF01425_consen 81 DAPVVQRLRAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSR 126 (441)
T ss_dssp S-HHHHHHHHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTB
T ss_pred ccchhhheecccccceeeecccceeccccccccccccccCcccccc
Confidence 9999999999999999999999999999999999999999999875
No 24
>PRK06565 amidase; Validated
Probab=100.00 E-value=1.2e-38 Score=264.33 Aligned_cols=131 Identities=26% Similarity=0.357 Sum_probs=121.5
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-c-----CcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCC
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-S-----KLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTR 69 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~-----~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~ 69 (135)
|++++++|++|++|++++|++||+++ + .+|+++.++++ |+++|+++|.+++. ||+||||+|||+|+++
T Consensus 12 L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vKD~~~v~ 90 (566)
T PRK06565 12 LRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAKDSYLVK 90 (566)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEecccccC
Confidence 46889999999999999999999987 3 68999998877 99999999976533 8999999999999999
Q ss_pred CcccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 70 GIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 70 G~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
|++||+||..+.++++.+||++|++|+++|||++||||||||+++.++ |.+||+++||||..+
T Consensus 91 G~~TT~Gs~~l~~~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~ 153 (566)
T PRK06565 91 GLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAY 153 (566)
T ss_pred CCCcccccHhhcCCCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCccc
Confidence 999999999999999999999999999999999999999999999876 679999999999865
No 25
>PRK05962 amidase; Validated
Probab=100.00 E-value=3.1e-38 Score=255.95 Aligned_cols=118 Identities=28% Similarity=0.317 Sum_probs=111.4
Q ss_pred HHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccccccccccCCCC-CCcH
Q psy10129 17 EKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTTCASKMLENFIA-PYDA 89 (135)
Q Consensus 17 ~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~-~~da 89 (135)
+++++||+++ +.+|+|+++++|.|+++|+++|.+++. ||+||||+|||+|+++|+|||+||+.+.++++ .+||
T Consensus 2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~dA 81 (424)
T PRK05962 2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADA 81 (424)
T ss_pred HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhcCCCCcCCh
Confidence 6899999999 999999999999999999999987532 99999999999999999999999999999988 6899
Q ss_pred HHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 90 TVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 90 ~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
++|+||+++|||++||||||||+++.+|.|++||+|+||||+.+.
T Consensus 82 ~vV~rL~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~ 126 (424)
T PRK05962 82 LIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARI 126 (424)
T ss_pred HHHHHHHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999998763
No 26
>PRK07235 amidase; Provisional
Probab=100.00 E-value=1.5e-36 Score=250.51 Aligned_cols=131 Identities=24% Similarity=0.240 Sum_probs=122.5
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCcccccc
Q psy10129 2 RHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTCA 76 (135)
Q Consensus 2 ~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~G 76 (135)
+++++ +++++.|++++++++++.. +..+++.....|++...|+..+.+.+. ||+||||+|||||+++|+|||+|
T Consensus 31 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~G 109 (502)
T PRK07235 31 LSLMQ-ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNG 109 (502)
T ss_pred HHHHH-hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCcc
Confidence 45677 9999999999999999999 999999999999998888887766433 89999999999999999999999
Q ss_pred cccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 77 SKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 77 s~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
|+.+.+++|.+||++|+||+++|||++||||||||+|+.+++|++||+|+||||..+
T Consensus 110 s~~~~~~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~ 166 (502)
T PRK07235 110 SSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGY 166 (502)
T ss_pred ChhhcCCCCCCCHHHHHHHHHCCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999865
No 27
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00 E-value=3.3e-33 Score=233.04 Aligned_cols=103 Identities=36% Similarity=0.467 Sum_probs=95.5
Q ss_pred CeEEecC-hHHHHHHHHhhhhhhCC----CCCcceEeeeccccCCCcccccccccccCCCCCCcHHHHHHHHhCCCeEEe
Q psy10129 30 NAFITVT-KNEALCKATEIVKDEKT----MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVG 104 (135)
Q Consensus 30 na~~~~~-~~~a~~~A~~~d~~~~~----pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~g 104 (135)
|+|++.. .|+++++|+++|++.+. ||+||||+||||||++|++||+||+.+. ++|.+||++|+||+++|||++|
T Consensus 2 ~a~i~~~~~e~al~~A~~ld~~~~~~~~~PL~GvP~aVKD~idvaG~pTTaGs~~~~-~~p~~DA~vV~rLr~AGAIiiG 80 (561)
T TIGR02713 2 EAWISLLSEEDLLAQAAALDARDARPERLPLYGVPFAVKDNIDVAGLPTTAACPAFA-YTPEEDATVVALLRAAGAIVVG 80 (561)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEcccccCCCccCcCCHhHc-CCCCcCHHHHHHHHHCCCEEEE
Confidence 6888885 48899999999976532 9999999999999999999999999986 7889999999999999999999
Q ss_pred ecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 105 KTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 105 ktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
|||||||+++.++.|++||+|+||||+.+
T Consensus 81 KTN~~Efa~g~~g~n~~~G~t~NP~d~~~ 109 (561)
T TIGR02713 81 KTNLDQFATGLVGTRSPYGAVRNAFDPAY 109 (561)
T ss_pred EeCchHhhcCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999875
No 28
>PRK07139 amidase; Provisional
Probab=99.97 E-value=5.7e-32 Score=220.30 Aligned_cols=110 Identities=34% Similarity=0.373 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhhcCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCcccccccccccCCCCCCcHHHHHH
Q psy10129 15 VTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEK 94 (135)
Q Consensus 15 v~~~~l~ri~~~~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~vV~r 94 (135)
+.+.++++++. ..+|++++...+.. ....||+||||+|||+|+++|++||+||..+.++++.+||++|+|
T Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~~~~~~dA~vV~r 76 (439)
T PRK07139 7 NFQKALEELKN-DKNNAVSYVFDEKN---------NKDGPLANCVFTIKDNFATSEGPTHASSKSLENFKPSYNATVVQK 76 (439)
T ss_pred hHHHHHHHhhc-cccCeEEEEecccC---------CCCCCcCCcEEEEEcceecCCCccCcChHHHccCCCCCchHHHHH
Confidence 45555555544 57788888755432 123499999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 95 LKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 95 L~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
|+++|||++||||||||+++.++.|++||+|+||||+.+.
T Consensus 77 Lr~AGAIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~ 116 (439)
T PRK07139 77 LINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKL 116 (439)
T ss_pred HHHCCCEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCC
Confidence 9999999999999999999999999999999999998763
No 29
>KOG1211|consensus
Probab=99.97 E-value=1.2e-31 Score=218.74 Aligned_cols=130 Identities=45% Similarity=0.579 Sum_probs=117.8
Q ss_pred HHcCCCCHHHHHHHHHHHHHhhcCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCccc-ccccc
Q psy10129 5 INKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPT-TCASK 78 (135)
Q Consensus 5 l~~g~~s~~ev~~~~l~ri~~~~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~t-t~Gs~ 78 (135)
+.+|.+++.++++.+++++...+.+|.++....+.++.+|...+.+.+. ||+|+||+|||||+++|.+| ||+|.
T Consensus 27 l~~~~l~~~~~ie~~l~~~~~~~~~~~~i~~~~~~~~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~ 106 (506)
T KOG1211|consen 27 LSSGLLTSKRIIESYLERINKWKPLNAKITVINEEALKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASW 106 (506)
T ss_pred hcccccchHHHHHHHHHHHhhcccccceeeeccHHHHHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhh
Confidence 4689999999999999999999555555555556699999999876554 99999999999999999999 99999
Q ss_pred cccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 79 MLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 79 ~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
.+.++.++.||++|++|+++|||++|||||+||+||..++|.+||+|+|||++.++
T Consensus 107 ~l~~~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v 162 (506)
T KOG1211|consen 107 MLEHYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRV 162 (506)
T ss_pred hhccCCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCCccCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999998654
No 30
>PRK08310 amidase; Provisional
Probab=99.97 E-value=1.1e-30 Score=210.15 Aligned_cols=101 Identities=30% Similarity=0.317 Sum_probs=85.7
Q ss_pred cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccccc--CCCCCCcHHHHHHHHhCCCeEEe
Q psy10129 27 SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLE--NFIAPYDATVVEKLKQSGAIIVG 104 (135)
Q Consensus 27 ~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~--~~~~~~da~vV~rL~~aGai~~g 104 (135)
..+|+|+..... -.+.....||+||||+|||+|+++|++||+||+.+. +.++.+||++|+||+++|||++|
T Consensus 5 ~~~~a~~~~~~~-------~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~G 77 (395)
T PRK08310 5 DPFNAFIAKPDK-------PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVG 77 (395)
T ss_pred CccccccccCCC-------CCCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEE
Confidence 457888876321 001112239999999999999999999999999884 46778999999999999999999
Q ss_pred ecCccccccccccCCCCCCcCCCCCCcccC
Q psy10129 105 KTNMDEFAMGLVVRILWLGLQSEFKLCLSY 134 (135)
Q Consensus 105 ktn~~E~~~~~~~~n~~~G~~~NP~~~~~~ 134 (135)
|||||||+|+.+|+|++||+|+||||+.+.
T Consensus 78 KTn~~E~~~~~~~~n~~~G~t~NP~~~~~~ 107 (395)
T PRK08310 78 KTQTDELAFSLNGQNAHYGTPVNPAAPDRV 107 (395)
T ss_pred eccchHHhcCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999998753
No 31
>KOG1212|consensus
Probab=99.96 E-value=3.1e-30 Score=212.25 Aligned_cols=133 Identities=23% Similarity=0.174 Sum_probs=125.6
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhC-----CCCCcceEeeeccccCCCcccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEK-----TMLQGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~-----~pL~GvP~~vKD~~~v~G~~tt 74 (135)
|+++|++|++|++|++++|++|+..+ +.+||++++..|.++.+|+..|...+ .||+||||+|||++.++|+.+|
T Consensus 60 L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~~vkg~d~T 139 (560)
T KOG1212|consen 60 LAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESISVKGYDST 139 (560)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhheeecCcccc
Confidence 57899999999999999999999999 99999999999999988887776553 2999999999999999999999
Q ss_pred cccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
.|.....+.+++.|+.+|+.||++|||++.+||.||.+|+..+.|+.||+|.||||..+
T Consensus 140 ~G~~~~~~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~r 198 (560)
T KOG1212|consen 140 AGLLARTNQPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSR 198 (560)
T ss_pred chhhhccCCCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccC
Confidence 99999999999999999999999999999999999999999999999999999999754
No 32
>PLN02722 indole-3-acetamide amidohydrolase
Probab=99.96 E-value=1.6e-30 Score=210.93 Aligned_cols=101 Identities=25% Similarity=0.206 Sum_probs=85.0
Q ss_pred cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCcccccccccccC-C-CCCCcHHHHHHHHhCCCeEEe
Q psy10129 27 SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLEN-F-IAPYDATVVEKLKQSGAIIVG 104 (135)
Q Consensus 27 ~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~-~-~~~~da~vV~rL~~aGai~~g 104 (135)
..+|+|+..... .+.......||+||||+|||+|+++|++||+||+.+.+ + ++.+||++|+||+++|||++|
T Consensus 5 ~~~~a~~~~~~~------~~~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilG 78 (422)
T PLN02722 5 PDYGAFMEKFVL------SPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVG 78 (422)
T ss_pred CCCCcceeeccc------cCCCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEE
Confidence 457888877422 11111122399999999999999999999999998864 4 457899999999999999999
Q ss_pred ecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 105 KTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 105 ktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
|||||||+++.+|+|++||+++||||+.|
T Consensus 79 KTn~~Efa~~~~g~n~~~G~t~NP~~~~r 107 (422)
T PLN02722 79 KTIMDEMAYSINGENAHYGTPTNPIAPDR 107 (422)
T ss_pred EechhhHhhCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999865
No 33
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=69.61 E-value=12 Score=31.05 Aligned_cols=103 Identities=19% Similarity=0.256 Sum_probs=58.8
Q ss_pred HHcCCCCHHHHHHHHHHHHHhhcCcCe-EEecChHHHHHHHHhhhhhhCC---------CC--CcceEeeeccccCCCcc
Q psy10129 5 INKNNISIREVTEKCLSRIEEVSKLNA-FITVTKNEALCKATEIVKDEKT---------ML--QGVTVAIKDNFCTRGIP 72 (135)
Q Consensus 5 l~~g~~s~~ev~~~~l~ri~~~~~lna-~~~~~~~~a~~~A~~~d~~~~~---------pL--~GvP~~vKD~~~v~G~~ 72 (135)
|.++...|.-++..+|.++|.-+.--+ +++.+.+-+.+...++.+.+.. .| +|--|.+||+-..--+.
T Consensus 235 iAD~ta~p~~vA~DLLsQAEHd~~a~aiLvT~s~~la~~v~~~v~~~l~~l~~~ei~~~~l~~~g~iilv~~l~ea~~~~ 314 (425)
T COG0141 235 IADETANPDFVAADLLSQAEHDPDAQAILVTDSEELAEAVEAAVERQLETLPRAEIARKALENYGAIILVDDLDEAVEIS 314 (425)
T ss_pred EeCCCCCHHHHHHHHHHHhhcCCCceEEEEeCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHhCCeEEEECCHHHHHHHH
Confidence 345677888899999999987744434 4444544444433333333222 23 57777777753322222
Q ss_pred cccccccccCCCCCCc-HHHHHHHHhCCCeEEeecCcc
Q psy10129 73 TTCASKMLENFIAPYD-ATVVEKLKQSGAIIVGKTNMD 109 (135)
Q Consensus 73 tt~Gs~~~~~~~~~~d-a~vV~rL~~aGai~~gktn~~ 109 (135)
....---+. ...+| -.++.+++.+|+|++|.-...
T Consensus 315 N~~APEHLe--i~~~~p~~~l~~I~nAGsIFlG~~sPe 350 (425)
T COG0141 315 NEYAPEHLE--LQTENPRELLGKIRNAGSIFLGHYSPE 350 (425)
T ss_pred HhhChHhhh--hhhcCHHHHHHHhcccceeeecCCCCc
Confidence 222222111 11223 468899999999999985443
No 34
>PRK13770 histidinol dehydrogenase; Provisional
Probab=62.42 E-value=8.7 Score=31.78 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=62.5
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcCcC-eEEecChHHHHHHHHhhhhhhCC---------CC--CcceEeeeccccCCCccc
Q psy10129 6 NKNNISIREVTEKCLSRIEEVSKLN-AFITVTKNEALCKATEIVKDEKT---------ML--QGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 6 ~~g~~s~~ev~~~~l~ri~~~~~ln-a~~~~~~~~a~~~A~~~d~~~~~---------pL--~GvP~~vKD~~~v~G~~t 73 (135)
.++...|.-++...|.++|.-|.-- .+++.+.+-+.+..++++.+... .| +|.-+.++|+-+...+..
T Consensus 230 AD~~Anp~~iAaDLLaQAEHd~~a~~iLvT~s~~la~~V~~ev~~ql~~lpr~~i~~~al~~~g~ii~v~~~eeai~~~N 309 (416)
T PRK13770 230 IDETADLDAIVYDVFAQAEHDELARTYVISEDAQVLKDLESRIAKALPNVDRYDIVSKSIANQHYLIHASNFDEACHVMN 309 (416)
T ss_pred ecCCCCHHHHHHHHHHHhccCCCCcEEEEeCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHhCCEEEEECCHHHHHHHHH
Confidence 4566778899999999998774433 34555555444444444433221 12 476677777654444433
Q ss_pred ccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccc
Q psy10129 74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112 (135)
Q Consensus 74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~ 112 (135)
....--+.=.. .....++.+++.+|+|++|.-...-++
T Consensus 310 ~~APEHLel~~-~~~~~~l~~i~nAGaiFlG~~sp~a~G 347 (416)
T PRK13770 310 TIAPEHASIQT-VNPQPYIEKVKYVGALFIGHYSPEVIG 347 (416)
T ss_pred hhChHhheehh-CCHHHHHhhCCEeceeccCCCCchhhh
Confidence 33332222111 123468899999999999976654443
No 35
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=60.72 E-value=11 Score=28.74 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHhCCCeEEeecCccccc
Q psy10129 85 APYDATVVEKLKQSGAIIVGKTNMDEFA 112 (135)
Q Consensus 85 ~~~da~vV~rL~~aGai~~gktn~~E~~ 112 (135)
.-++..=++.+|..||.++|.|++||-.
T Consensus 158 ~fET~AEir~~r~~GaD~VGMS~vpEvi 185 (237)
T TIGR01698 158 HYETPAEIRMAGILGADLVGMSTVPETI 185 (237)
T ss_pred CcCCHHHHHHHHHcCCCEeccCchHHHH
Confidence 3457777899999999999999999964
No 36
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=54.53 E-value=16 Score=30.36 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=62.3
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcCc-CeEEecChHHHHHHHHhhhhhhCC---------CC--CcceEeeeccccCCCccc
Q psy10129 6 NKNNISIREVTEKCLSRIEEVSKL-NAFITVTKNEALCKATEIVKDEKT---------ML--QGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 6 ~~g~~s~~ev~~~~l~ri~~~~~l-na~~~~~~~~a~~~A~~~d~~~~~---------pL--~GvP~~vKD~~~v~G~~t 73 (135)
.++.-.|.-++...|.++|.-|.- -.+++.+.+-+.+..++++..... .| +|.-+.++|.-+...+..
T Consensus 240 AD~~Anp~~vAaDLLaQAEHd~~a~aiLvT~s~~la~~V~~~v~~ql~~l~r~~ia~~sl~~~g~iivv~~leeai~~~N 319 (425)
T PRK00877 240 ADETADPDFVAADLLSQAEHDPDAQSILVTTSEELAEAVAAEVERQLATLPRAEIARASLEGQGAIILVDDLEEAIELSN 319 (425)
T ss_pred eCCCCCHHHHHHHHHHHhccCCCCcEEEEECCHHHHHHHHHHHHHHHHhCChHHHHHHHHHhCCEEEEECCHHHHHHHHH
Confidence 456677889999999999877443 344555655555555555444322 12 466677777644433333
Q ss_pred ccccccccCCCCCCcHHHHHHHHhCCCeEEeecCcccc
Q psy10129 74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111 (135)
Q Consensus 74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~ 111 (135)
....--+.=.. ...-.++.+++.+|+|++|.-...-+
T Consensus 320 ~~APEHLel~~-~~p~~~l~~I~nAGaiFlG~~tp~a~ 356 (425)
T PRK00877 320 AYAPEHLEIQT-EDPRALLDRIRNAGAIFLGPYTPESL 356 (425)
T ss_pred hhChHheeehh-CCHHHHHhhcCccceeccCCCCchhh
Confidence 33333222111 12245789999999999998654333
No 37
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=52.63 E-value=16 Score=29.95 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=59.0
Q ss_pred HcCCCCHHHHHHHHHHHHHhhc-CcCeEEecChHHHHHHHHhhhhhhCC-----------CCCcceEeeeccccCCCccc
Q psy10129 6 NKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKT-----------MLQGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 6 ~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~a~~~A~~~d~~~~~-----------pL~GvP~~vKD~~~v~G~~t 73 (135)
.++.-.|.-+....+.++|.-+ ..-.+++.+.+.+.+..+++++.... -=+|.-+.++|.-+.-.+..
T Consensus 213 AD~~A~p~~vAaDLLaQAEH~~~a~aiLvT~s~~la~~V~~~v~~ql~~l~r~~~~~~~~~~~g~ii~~~~~~eai~~~N 292 (390)
T cd06572 213 ADETANPEFVAADLLSQAEHDPDSQAILVTTSEELAEAVEEEVERQLAELPRREIAAKSLLDYGAIILVDDLEEAIELAN 292 (390)
T ss_pred eCCCCCHHHHHHHHHhhhccCCCCeEEEEECCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhCCEEEEECCHHHHHHHHH
Confidence 4566778888999999988773 33445555555555544555443321 12466666776544333333
Q ss_pred ccccccccCCCCCCcHHHHHHHHhCCCeEEeecC
Q psy10129 74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTN 107 (135)
Q Consensus 74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn 107 (135)
....--+.=.. .....++.+++.+|+|++|.-.
T Consensus 293 ~~APEHLel~~-~~~~~~l~~i~nAGsiFlG~~t 325 (390)
T cd06572 293 EYAPEHLELQT-EDPEELLEKIRNAGSIFLGPYT 325 (390)
T ss_pred hhchhhheeHh-cCHHHHHhhCccceEEeecCCC
Confidence 33322221111 1223488999999999999864
No 38
>PLN02926 histidinol dehydrogenase
Probab=52.47 E-value=17 Score=30.22 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=61.1
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcCcC-eEEecChHHHHHHHHhhhhhhCC---------CC-CcceEeeeccccCCCcccc
Q psy10129 6 NKNNISIREVTEKCLSRIEEVSKLN-AFITVTKNEALCKATEIVKDEKT---------ML-QGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 6 ~~g~~s~~ev~~~~l~ri~~~~~ln-a~~~~~~~~a~~~A~~~d~~~~~---------pL-~GvP~~vKD~~~v~G~~tt 74 (135)
.++...|.-++...+.++|.-|.-- .+++.+.+-+.+.-++++...+. .| +|.-+.++|.-+...+...
T Consensus 244 AD~tA~p~~vAaDLLaQAEHdp~a~aiLvT~s~~la~~V~~~v~~ql~~l~r~~i~~~sl~~g~iivv~~l~ea~~~~N~ 323 (431)
T PLN02926 244 ADKTANPVHVAADLLSQAEHGPDSQVVLVAVGDVDLDAIEEEVEKQCQSLPRGEIASKALGHSFIVVARDMAEAISFSNL 323 (431)
T ss_pred eCCCCCHHHHHHHHHHHhccCCCCcEEEEECCHHHHHHHHHHHHHHHHhCChHHHHHHHHHCCEEEEECCHHHHHHHHHh
Confidence 4566778999999999998774433 34555555554444444443221 11 3666888876544444333
Q ss_pred cccccccCCCCCCcHHHHHHHHhCCCeEEeecCcc
Q psy10129 75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMD 109 (135)
Q Consensus 75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~ 109 (135)
...--+.=.. ...-.++.+++.+|+|++|.-...
T Consensus 324 ~APEHLei~~-~~~~~~l~~i~nAGaiFlG~~sp~ 357 (431)
T PLN02926 324 YAPEHLIVNV-EDAESWLDKIDNAGSVFLGRWTPE 357 (431)
T ss_pred hChHhheehh-cCHHHHHhhcCccceeccCCCCch
Confidence 3332222111 123468899999999999975443
No 39
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=51.88 E-value=17 Score=30.14 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=61.8
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcCcC-eEEecChHHHHHHHHhhhhhhCC---------CC--CcceEeeeccccCCCccc
Q psy10129 6 NKNNISIREVTEKCLSRIEEVSKLN-AFITVTKNEALCKATEIVKDEKT---------ML--QGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 6 ~~g~~s~~ev~~~~l~ri~~~~~ln-a~~~~~~~~a~~~A~~~d~~~~~---------pL--~GvP~~vKD~~~v~G~~t 73 (135)
.++...|+-++...|.++|.-|.-- .+++.+.+-+.+..++++..... .| +|.-+.++|+-+...+..
T Consensus 235 AD~~Anp~~vAaDLLaQAEHd~~a~~iLvT~s~~la~~V~~~v~~ql~~l~r~~i~~~sl~~~g~ii~v~~l~ea~~~~N 314 (426)
T PRK12447 235 ADDTADPELVATDLLGQAEHGPNSPAVLITTSRKLAEEVLAEIERLLAILPTADVASAAWRDYGEVILCDDLEEMVAEAD 314 (426)
T ss_pred eCCCCCHHHHHHHHHHHhccCCCCceEEEECCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCEEEEECCHHHHHHHHH
Confidence 4566778889999999998774433 34455555444444444433221 22 466677777654444443
Q ss_pred ccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccc
Q psy10129 74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112 (135)
Q Consensus 74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~ 112 (135)
....--+.=.. .....++.+++.+|+|++|.-...-++
T Consensus 315 ~~APEHLel~~-~~~~~~l~~i~nAGaiFlG~~sp~a~G 352 (426)
T PRK12447 315 RYASEHVQVMT-EDPDWFLENMTNYGALFLGERTNVAYG 352 (426)
T ss_pred hhChHheeehh-CCHHHHHhhcCccceeccCCCCchhhh
Confidence 44333222111 123468899999999999976544333
No 40
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=49.73 E-value=6.5 Score=32.47 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=53.6
Q ss_pred HcCCCCHHHHHHHHHHHHHhhc-CcCeEEecChHHHHHHHHhhhhhhCC-----------CCCcceEeeeccccCCCccc
Q psy10129 6 NKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKT-----------MLQGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 6 ~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~a~~~A~~~d~~~~~-----------pL~GvP~~vKD~~~v~G~~t 73 (135)
.++...|.-++...|.++|.-+ ..-.+++.+.+.+-+..++++.+... - +|.-+.++|.-....+..
T Consensus 227 AD~~A~p~~vAaDLLaQAEHd~~a~~vLvt~s~~la~~V~~~v~~~l~~l~r~~i~~~sl~-~g~ii~~~~l~ea~~~~N 305 (412)
T PF00815_consen 227 ADETANPEFVAADLLAQAEHDPDAQAVLVTTSEELAEAVEAEVERQLEELPRREIAEKSLE-NGAIIVVDSLEEAIELAN 305 (412)
T ss_dssp E-TTS-HHHHHHHHHHHHTT-TT-EEEEEES-HHHHHHHHHHHHHHHTT-TTHHHHHHHHT-T-EEEE-SSHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHhccCCCCceEEEECCHHHHHHHHHHHHHHHHhCCchHHHHHHHH-CCeEEEECCHHHHHHHHH
Confidence 4566788899999999998774 34445566666666555666554432 3 677677766543333322
Q ss_pred ccccccccCCCCCCc-HHHHHHHHhCCCeEEeecCcccc
Q psy10129 74 TCASKMLENFIAPYD-ATVVEKLKQSGAIIVGKTNMDEF 111 (135)
Q Consensus 74 t~Gs~~~~~~~~~~d-a~vV~rL~~aGai~~gktn~~E~ 111 (135)
....--+.= ...| -.++.+++.+|+|++|.-...-+
T Consensus 306 ~~APEHLel--~~~~~~~~~~~i~~AGaiFlG~~tp~a~ 342 (412)
T PF00815_consen 306 EYAPEHLEL--QVEDPEELLEKIRNAGAIFLGEYTPEAL 342 (412)
T ss_dssp HH--SEEEE--ESTTHHHHGGG--S-SEEEESTT--HHH
T ss_pred HhhHHHHHH--HHcCHHHHHHHhhccChhhcCCCCCHHH
Confidence 222221211 1123 35889999999999997554433
No 41
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=48.77 E-value=24 Score=28.99 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=61.9
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcCcC-eEEecChHHHHHHHHhhhhhhCC---------CC--CcceEeeeccccCCCccc
Q psy10129 6 NKNNISIREVTEKCLSRIEEVSKLN-AFITVTKNEALCKATEIVKDEKT---------ML--QGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 6 ~~g~~s~~ev~~~~l~ri~~~~~ln-a~~~~~~~~a~~~A~~~d~~~~~---------pL--~GvP~~vKD~~~v~G~~t 73 (135)
.++.-.|.-++...|.++|.-+.-- .+++.+.+-+.+.-++++..... .| +|.-+.++|.-+.-.+..
T Consensus 209 AD~~Anp~~iAaDLLaQAEHd~~a~~iLvT~s~~la~~V~~~v~~ql~~l~r~~i~~~al~~~g~ii~v~~l~ea~~~~N 288 (393)
T TIGR00069 209 ADETANPEFVAADLLSQAEHDPDAQAILVTTSEELAEAVQEEIERQLATLPRREIARKSLEDNGAIILVDDLEEAIEISN 288 (393)
T ss_pred eCCCCCHHHHHHHHHHHhccCCCCcEEEEECCHHHHHHHHHHHHHHHHhCChHHHHHHHHHhCCEEEEECCHHHHHHHHH
Confidence 4566678888999999988774433 34555555554444444443322 22 477688887644433333
Q ss_pred ccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccc
Q psy10129 74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112 (135)
Q Consensus 74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~ 112 (135)
....--+.=.. ...-.++.+++.+|+|++|.-...-++
T Consensus 289 ~~APEHLel~~-~~p~~~l~~I~nAGaiFlG~~tp~a~G 326 (393)
T TIGR00069 289 DYAPEHLELQT-KNPEELLPKIRNAGSIFLGPYTPEAAG 326 (393)
T ss_pred hhChHhheehh-CCHHHHHhhcCccceeccCCCCchhhh
Confidence 33332222111 122458899999999999986544343
No 42
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=47.63 E-value=66 Score=25.18 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=36.1
Q ss_pred CcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCcccccccccccCCCCC-CcHHHHHHHHhCCCeEEe
Q psy10129 28 KLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAP-YDATVVEKLKQSGAIIVG 104 (135)
Q Consensus 28 ~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~~-~da~vV~rL~~aGai~~g 104 (135)
.+||. .++......+.+. .....|+.++=| .|++-......+...... +-+..+++..+.|+.++|
T Consensus 219 GiNC~---~p~~~~~~l~~~~-----~~~~~pl~~~PN---aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiG 285 (304)
T PRK09485 219 GVNCT---APELVTAAIAALR-----AVTDKPLVVYPN---SGEVYDAVTKTWHGPADDASLGELAPEWYAAGARLIG 285 (304)
T ss_pred EecCC---CHHHHHHHHHHHH-----hccCCcEEEECC---CCCCCCCCCCcccCCCChHHHHHHHHHHHHcCCeEEe
Confidence 46774 4555444444442 222468888877 444432222222221111 345677888999999998
No 43
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=40.96 E-value=28 Score=27.01 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=22.0
Q ss_pred CcHHHHHHHHhCCCeEEeecCccccc
Q psy10129 87 YDATVVEKLKQSGAIIVGKTNMDEFA 112 (135)
Q Consensus 87 ~da~vV~rL~~aGai~~gktn~~E~~ 112 (135)
++..=++.|+..||.++|.|.+||.-
T Consensus 162 ET~AEir~~r~~GaDvVGMS~vPEvi 187 (264)
T PRK07823 162 STRAESRWFAAQGWSLVNMTGYPEAV 187 (264)
T ss_pred CCHHHHHHHHHcCCCEeccCccHHHH
Confidence 45556788899999999999999974
No 44
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=39.60 E-value=30 Score=26.88 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=22.2
Q ss_pred CcHHHHHHHHhCCCeEEeecCcccccc
Q psy10129 87 YDATVVEKLKQSGAIIVGKTNMDEFAM 113 (135)
Q Consensus 87 ~da~vV~rL~~aGai~~gktn~~E~~~ 113 (135)
++..=++.+|..||.++|.|++||-..
T Consensus 184 eT~AEirm~r~~GaDvVGMS~vPEv~l 210 (262)
T COG0005 184 ETPAEIRMFRSLGADVVGMSTVPEVIL 210 (262)
T ss_pred CCHHHHHHHHHhCCCcccCcCCcHHHH
Confidence 455567888999999999999999653
No 45
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=39.44 E-value=15 Score=21.66 Aligned_cols=40 Identities=23% Similarity=0.062 Sum_probs=22.9
Q ss_pred HHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCcc
Q psy10129 92 VEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCL 132 (135)
Q Consensus 92 V~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~ 132 (135)
..+|.++|| -+---+.+||.+-..++=.+-|..-.||+.+
T Consensus 8 Lr~L~~aG~-~v~iM~~~eF~~CW~nFV~~~~~~F~pW~~l 47 (55)
T PF05240_consen 8 LRRLCQAGA-QVSIMTYSEFQYCWENFVDNQGRPFQPWEKL 47 (55)
T ss_dssp HHHHHHTT--EEEE--HHHHHHHHHHCB--TT------TTH
T ss_pred HHHHHHCCC-eEEecCcHHHHHHHHHHhcCCCCCCCcchhh
Confidence 578889994 5566677999988887777778889999865
No 46
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=37.89 E-value=31 Score=27.15 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.8
Q ss_pred CcHHHHHHHHhCCCeEEeecCccccc
Q psy10129 87 YDATVVEKLKQSGAIIVGKTNMDEFA 112 (135)
Q Consensus 87 ~da~vV~rL~~aGai~~gktn~~E~~ 112 (135)
++..=++.++..||.++|.|.+||.-
T Consensus 170 ET~AEir~~r~~GaDvVGMS~vPEvi 195 (290)
T PRK07432 170 STKAESNLYRSWGATVIGMTNLPEAK 195 (290)
T ss_pred CcHHHHHHHHHcCCCEeccCchHHHH
Confidence 56677889999999999999999974
No 47
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=35.00 E-value=38 Score=26.65 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.2
Q ss_pred CcHHHHHHHHhCCCeEEeecCccccc
Q psy10129 87 YDATVVEKLKQSGAIIVGKTNMDEFA 112 (135)
Q Consensus 87 ~da~vV~rL~~aGai~~gktn~~E~~ 112 (135)
++..=++.++..||.++|.|.+||..
T Consensus 167 ET~AEir~~r~~GaDvVGMStvPEvi 192 (289)
T PRK08931 167 STLAESKLYRSWGCDVIGMTNMPEAK 192 (289)
T ss_pred CCHHHHHHHHHcCCCEeccCccHHHH
Confidence 45666788999999999999999974
No 48
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=33.03 E-value=42 Score=25.98 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=22.1
Q ss_pred CcHHHHHHHHhC-CCeEEeecCccccc
Q psy10129 87 YDATVVEKLKQS-GAIIVGKTNMDEFA 112 (135)
Q Consensus 87 ~da~vV~rL~~a-Gai~~gktn~~E~~ 112 (135)
++..=++.++.. ||.++|.|.+||..
T Consensus 171 ET~AEir~~r~~~GaD~VGMS~vpEvi 197 (267)
T PRK08564 171 STRAESRMWREVFKADIIGMTLVPEVN 197 (267)
T ss_pred CCHHHHHHHHHccCCCEeccCccHHHH
Confidence 466677888997 99999999999974
No 49
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=30.57 E-value=88 Score=25.03 Aligned_cols=39 Identities=23% Similarity=0.043 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 89 ATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 89 a~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
+..++++-++|.|-+.-||.+-...-.-+.-+.+|+ ||+
T Consensus 111 g~y~~~aa~~Gligi~~tN~~~~vaP~GG~~~~lGT--NPi 149 (330)
T PLN00105 111 GYYAEKVAQQGLIGLVFANSPEFVAPAGGIEPIFGT--NPI 149 (330)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCeeCCCCCCCCcccC--CCe
Confidence 467899999999999999987643222334444553 554
No 50
>PRK00768 nadE NAD synthetase; Reviewed
Probab=29.70 E-value=32 Score=26.72 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.6
Q ss_pred hCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 97 QSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 97 ~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
..|.+++|..|..|...|..|-....+.-.||.
T Consensus 150 ~~~~lvlgT~N~sE~~~Gy~TkyGD~~~d~~pi 182 (268)
T PRK00768 150 ATGGLVVGTDHAAEAVTGFFTKFGDGGADILPL 182 (268)
T ss_pred cCCCEEEcCCcccHHHhCceeccCCccccchhh
Confidence 569999999999999988776554444445553
No 51
>PRK13769 histidinol dehydrogenase; Provisional
Probab=29.28 E-value=1.4e+02 Score=24.49 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHhhcCcCe-EEecChHHHHHHHHhhhhhhCCCCCcc--eEeeeccccCCCcccccccccccCCCCC
Q psy10129 10 ISIREVTEKCLSRIEEVSKLNA-FITVTKNEALCKATEIVKDEKTMLQGV--TVAIKDNFCTRGIPTTCASKMLENFIAP 86 (135)
Q Consensus 10 ~s~~ev~~~~l~ri~~~~~lna-~~~~~~~~a~~~A~~~d~~~~~pL~Gv--P~~vKD~~~v~G~~tt~Gs~~~~~~~~~ 86 (135)
..|+-++...+.++|.-+.--+ +++.+.+-+.+.-++++.....+ .|- -+.++|.-+.-.+......--+.=..
T Consensus 207 a~p~~vAaDLLaQAEH~~~a~~iLvT~s~~la~~V~~~v~~~~~~~-~~~~~iivv~~leeai~~~N~~APEHLel~~-- 283 (368)
T PRK13769 207 VPPEVAVRGALAQLEHGPTSFAYLLSTDAELLKAAEEIYRRERTSS-MGPLEVRKVAGVEEAVRFIDEIAPEHLEVWG-- 283 (368)
T ss_pred CCHHHHHHHHHHHhhcCCCCcEEEEECCHHHHHHHHHHHHHHHHhc-CCCCeEEEECCHHHHHHHHHhhChHheEeeC--
Confidence 6788888899999887744333 34445444444334444332222 332 46666654443443344333332222
Q ss_pred CcHHHHHHHHhCCCeEE
Q psy10129 87 YDATVVEKLKQSGAIIV 103 (135)
Q Consensus 87 ~da~vV~rL~~aGai~~ 103 (135)
...++.+++.+|+|.+
T Consensus 284 -~~~~~~~i~nAGsiFl 299 (368)
T PRK13769 284 -RREVAYRVRNVGAVSV 299 (368)
T ss_pred -cHHHHhhCCccCChhc
Confidence 3358899999999999
No 52
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=28.71 E-value=42 Score=25.01 Aligned_cols=16 Identities=44% Similarity=0.704 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCeEEee
Q psy10129 90 TVVEKLKQSGAIIVGK 105 (135)
Q Consensus 90 ~vV~rL~~aGai~~gk 105 (135)
..|+.|+++|+.+.|-
T Consensus 130 eai~~l~~~G~~V~gv 145 (201)
T COG0461 130 EAVEALREAGAEVVGV 145 (201)
T ss_pred HHHHHHHHcCCeEEEE
Confidence 4689999999999874
No 53
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=28.16 E-value=92 Score=18.86 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=20.1
Q ss_pred HHHHHcCC-CCHHHHHHHHHHHHHhh
Q psy10129 2 RHAINKNN-ISIREVTEKCLSRIEEV 26 (135)
Q Consensus 2 ~~~l~~g~-~s~~ev~~~~l~ri~~~ 26 (135)
.+.+++|. -|..||+++.++..++.
T Consensus 15 ~~~V~sG~Y~s~SEVir~aLR~le~~ 40 (69)
T TIGR02606 15 RSQVQSGRYGSASEVVRAALRLLEER 40 (69)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHH
Confidence 46788898 45789999999988764
No 54
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=27.82 E-value=1.1e+02 Score=24.62 Aligned_cols=39 Identities=13% Similarity=-0.090 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 89 ATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 89 a~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
+..++++-++|.|-+.-||.+-...-.-+..+.+|+ ||+
T Consensus 121 g~y~~~aa~~G~igi~~tn~~~~vaP~Gg~~~~lGT--NPi 159 (332)
T PRK13260 121 GSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGT--NPL 159 (332)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCeeCCCCCCCCcccC--CCE
Confidence 457888999999999999987643322334445553 554
No 55
>PRK10098 putative dehydrogenase; Provisional
Probab=27.36 E-value=1.1e+02 Score=24.78 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=18.5
Q ss_pred cHHHHHHHHhCCCeEEeecCcc
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMD 109 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~ 109 (135)
=+..++++-++|.|-++-||.+
T Consensus 124 ~g~y~~~aa~~G~igi~~tN~~ 145 (350)
T PRK10098 124 IGHWAEQCAAAGLVSIHFVNVV 145 (350)
T ss_pred hHHHHHHHHHCCCEEEEEecCC
Confidence 4578899999999999999943
No 56
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=24.93 E-value=1.3e+02 Score=24.33 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=26.0
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
=+..++++-++|.|-+.-||.+-...-.-+..+.+|+ ||+
T Consensus 120 ~g~Y~~~aa~~G~Igi~~tNs~~~vaP~GG~~~~lGT--NPi 159 (349)
T TIGR03175 120 LSYFVRQAAEQGMVALSMCQSDPMVVPFGGTDIYFGT--NPI 159 (349)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCeeCCCCCCCCCcCC--CCE
Confidence 3567888889999999999987643222333444443 554
No 57
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=24.89 E-value=62 Score=22.38 Aligned_cols=44 Identities=23% Similarity=0.133 Sum_probs=28.6
Q ss_pred EeeeccccCCCcccccccccccCCCCCCcHHHHHHHHhCCCeEEeec
Q psy10129 60 VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKT 106 (135)
Q Consensus 60 ~~vKD~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gkt 106 (135)
++-||.+.-.+..-..|+..+ ++...+.+|+.|.++|-|.+-|.
T Consensus 21 ~S~~d~~~~~~~~e~G~~wvW---i~DN~~~~vRALl~~grV~v~~e 64 (132)
T PF14468_consen 21 YSKKDFLNDDYDREFGNAWVW---IHDNQSEVVRALLQAGRVKVNKE 64 (132)
T ss_pred hccchhhcccchhhcCceEEE---EecCcCHHHHHHHHcCceeeccC
Confidence 344555544444444444443 45667889999999999988653
No 58
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.29 E-value=84 Score=15.87 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.0
Q ss_pred CHHHHHcCCCCHHHHHH
Q psy10129 1 IRHAINKNNISIREVTE 17 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~ 17 (135)
|.+++.+|.+|.+|.-+
T Consensus 8 L~~l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 8 LKELYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHcCCCCHHHHHH
Confidence 45678899999888654
No 59
>KOG3079|consensus
Probab=24.26 E-value=1.8e+02 Score=21.67 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=35.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhC
Q psy10129 2 RHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEK 52 (135)
Q Consensus 2 ~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~ 52 (135)
.+.+++|++-|.|++...++..-.. ..-|.|+---+.+-.+|+........
T Consensus 59 ~~~i~~G~iVP~ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~ 110 (195)
T KOG3079|consen 59 KEIIKNGDLVPVEITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQ 110 (195)
T ss_pred HHHHHcCCcCcHHHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhc
Confidence 5678999999999999999987666 66564444333345566666665543
No 60
>KOG1212|consensus
Probab=23.44 E-value=91 Score=26.97 Aligned_cols=72 Identities=11% Similarity=0.010 Sum_probs=48.2
Q ss_pred CCCcceEeeecc----cc---CCCcccccccccccCCCCCCcHHHHHHHHhCCCeEEeecC-------ccccccccccCC
Q psy10129 54 MLQGVTVAIKDN----FC---TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTN-------MDEFAMGLVVRI 119 (135)
Q Consensus 54 pL~GvP~~vKD~----~~---v~G~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn-------~~E~~~~~~~~n 119 (135)
.+-+|||.+=.. +. ..++.-+...+.-..+.+.-+|.-...|..+|+.++|-++ +|-+..|..|..
T Consensus 162 ~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEaALigaggS~lGiGsDigGSiRiPa~f~Gl~GlK 241 (560)
T KOG1212|consen 162 KLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEAALLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLK 241 (560)
T ss_pred HcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHHHHHhCCcceeccccccCCceeechhhccccccC
Confidence 467777766543 22 2343333344455677888899999999999999999876 555556666666
Q ss_pred CCCCcC
Q psy10129 120 LWLGLQ 125 (135)
Q Consensus 120 ~~~G~~ 125 (135)
|..++.
T Consensus 242 PT~~r~ 247 (560)
T KOG1212|consen 242 PTPGRV 247 (560)
T ss_pred CCCCee
Confidence 655543
No 61
>KOG1592|consensus
Probab=23.22 E-value=91 Score=24.96 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.8
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhhcCcCe
Q psy10129 3 HAINKNNISIREVTEKCLSRIEEVSKLNA 31 (135)
Q Consensus 3 ~~l~~g~~s~~ev~~~~l~ri~~~~~lna 31 (135)
..+++|. |+.+.+++.+..+|..|..||
T Consensus 36 ~~l~~~~-sa~DaveaAi~~LEd~p~fNA 63 (326)
T KOG1592|consen 36 LALKSGF-SALDAVEAALRELEDDPKFNA 63 (326)
T ss_pred HHhhcCC-ccHHHHHHHHHHHhcCCccCC
Confidence 3577777 999999999999998887776
No 62
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=23.21 E-value=48 Score=25.81 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=25.8
Q ss_pred HhCCCeEEeecCccccccccccCCCCCCcCCCC
Q psy10129 96 KQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEF 128 (135)
Q Consensus 96 ~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP 128 (135)
.+.|.+++|+.|-.|+..|..|-.--.|.=.||
T Consensus 134 n~~~~lVlGTgn~sE~~~Gy~TkyGDg~~d~~P 166 (268)
T COG0171 134 NKLGGLVLGTGNKSELALGYFTKYGDGAVDINP 166 (268)
T ss_pred hhcCCEEEcCCcHHHHhcCceecccCcccChhh
Confidence 378999999999999999887765555555555
No 63
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=22.87 E-value=1.5e+02 Score=23.93 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=25.9
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
=+..++++-++|.|-++-||.+-..--.-+.-+.+|+ ||+
T Consensus 120 ~g~y~~~aa~~Gligi~~tns~~~vaP~Gg~~~~lGT--NPi 159 (349)
T PRK15025 120 ISYFVQQAARAGLIGLSMCQSDPMVVPFGGAEIYYGT--NPL 159 (349)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCeeCCCCCCCCCcCC--CCe
Confidence 3567888899999999999987543222233444443 554
No 64
>PF06591 Phage_T4_Ndd: T4-like phage nuclear disruption protein (Ndd); InterPro: IPR009514 This family consists of several nuclear disruption (Ndd) proteins from T4-like phages. Early in a Bacteriophage T4 infection, the phage ndd gene causes the rapid destruction of the structure of the Escherichia coli nucleoid. The targets of Ndd action may be the chromosomal sequences that determine the structure of the nucleoid [].
Probab=22.01 E-value=84 Score=22.34 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.4
Q ss_pred HHHHHhCCCeEEeecCcccccccc
Q psy10129 92 VEKLKQSGAIIVGKTNMDEFAMGL 115 (135)
Q Consensus 92 V~rL~~aGai~~gktn~~E~~~~~ 115 (135)
++.|..+||..||....-||..+.
T Consensus 6 ~~di~~agaq~ig~~~~G~f~~~~ 29 (152)
T PF06591_consen 6 RKDILSAGAQRIGTFKNGEFFVGS 29 (152)
T ss_pred hhhHhhcCCEEEEEEeCcEEEcCC
Confidence 678999999999999999995544
No 65
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=21.89 E-value=1.6e+02 Score=22.76 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=33.9
Q ss_pred cCCCCHHHHHHHHHHHHHhh-cCcCeEE-ecChHHH---HHHHHhhhhhhCCCCCcceEee
Q psy10129 7 KNNISIREVTEKCLSRIEEV-SKLNAFI-TVTKNEA---LCKATEIVKDEKTMLQGVTVAI 62 (135)
Q Consensus 7 ~g~~s~~ev~~~~l~ri~~~-~~lna~~-~~~~~~a---~~~A~~~d~~~~~pL~GvP~~v 62 (135)
.|.+++.++++...++..+. |.+-.-. ..+.++. ..+++.......+.|.|||-++
T Consensus 81 ~~~~d~e~vl~~~~~K~~~R~p~vf~~~~~~s~~e~~~~We~~K~~ek~~~s~l~~ip~~l 141 (262)
T PRK09562 81 QGAFDFADVVEAISDKLIRRHPHVFGDVEAESSEEVLANWEQIKAEERAESSVLDGIPRGL 141 (262)
T ss_pred cCCCCHHHHHHHHHHHHhhhchhhccCCCCCCHHHHHHHHHHHHHHHHhccCchhcCcccC
Confidence 67899999999999988776 7553322 2233322 2344443332224788888554
No 66
>PRK00876 nadE NAD synthetase; Reviewed
Probab=21.41 E-value=64 Score=25.79 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=23.6
Q ss_pred hCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 97 QSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 97 ~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
..|.+++|.+|-.|+..|..|-.---+.-.+|.
T Consensus 187 ~~~~lVlgT~NksE~~~Gy~TkyGD~~~d~~Pi 219 (326)
T PRK00876 187 RLNYAVAGTPNRLEYDQGFFVKNGDGAADLKPI 219 (326)
T ss_pred hcCCEEEcCCchhhHhhCCeeeecCccccchhc
Confidence 569999999999999988775443333344443
No 67
>PRK13980 NAD synthetase; Provisional
Probab=21.33 E-value=1.4e+02 Score=22.81 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=26.9
Q ss_pred HHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCC
Q psy10129 93 EKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKL 130 (135)
Q Consensus 93 ~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~ 130 (135)
..-++.|.+++|..|-.|...|..|.....+...+|..
T Consensus 126 ~~A~~~g~lvlgTgn~sE~~~G~~t~~gD~~~~l~Pl~ 163 (265)
T PRK13980 126 DYANRENRLVLGTGNKSELLLGYFTKYGDGAVDLNPIG 163 (265)
T ss_pred HHHhhcCCEEEcCCCHhHHHhCCccCCCCcccCcccCC
Confidence 33357899999999999998876654444444566653
No 68
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=21.29 E-value=99 Score=24.49 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=16.8
Q ss_pred CCCcHHHHHHHHhCCCeEEe
Q psy10129 85 APYDATVVEKLKQSGAIIVG 104 (135)
Q Consensus 85 ~~~da~vV~rL~~aGai~~g 104 (135)
--++..+|++|++.|++++-
T Consensus 40 IVHN~~Vv~~L~~~g~~fve 59 (294)
T COG0761 40 IVHNRYVVDRLREKGAIFVE 59 (294)
T ss_pred cccCHHHHHHHHHcCCEecc
Confidence 34677899999999998885
No 69
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=21.28 E-value=38 Score=25.69 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=22.9
Q ss_pred HhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 96 KQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 96 ~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
...|.+++|..|..|+..|..|.....+.-.+|.
T Consensus 118 ~~~~~lVlgT~N~sE~~~Gy~T~~GD~~~d~~Pi 151 (242)
T PF02540_consen 118 NKYNYLVLGTGNKSELLLGYFTKYGDGAGDIAPI 151 (242)
T ss_dssp HHHTEEEBE--CHHHHHHTCSHTTTTTSSSBETT
T ss_pred cccceEEecCCcHHHhhcCcccccCcccccceee
Confidence 4569999999999999988776544444444554
No 70
>PLN02489 homocysteine S-methyltransferase
Probab=20.64 E-value=3e+02 Score=21.96 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.4
Q ss_pred cHHHHHHHHhCCCeEEe
Q psy10129 88 DATVVEKLKQSGAIIVG 104 (135)
Q Consensus 88 da~vV~rL~~aGai~~g 104 (135)
-+..+.+.++.|+.+||
T Consensus 298 ~~~~~~~~~~~Ga~iIG 314 (335)
T PLN02489 298 FVSYVNKWRDAGASLIG 314 (335)
T ss_pred HHHHHHHHHHCCCcEEe
Confidence 45678888999999998
No 71
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=20.27 E-value=78 Score=24.14 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.5
Q ss_pred CcHHHHHHHHhCCCeEEeecCcccccc
Q psy10129 87 YDATVVEKLKQSGAIIVGKTNMDEFAM 113 (135)
Q Consensus 87 ~da~vV~rL~~aGai~~gktn~~E~~~ 113 (135)
++..=++.|++.||..+|.+..||.-+
T Consensus 165 eT~AE~r~lr~~Gad~VgMs~~pEa~~ 191 (245)
T PRK09136 165 ETAAEIARLERDGCDLVGMTGMPEAAL 191 (245)
T ss_pred CCHHHHHHHHHcCCCEEcCcHHHHHHH
Confidence 677788999999999999999998654
No 72
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=20.20 E-value=2.5e+02 Score=22.41 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhh-c---CcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCcccccccccccCCCCCC
Q psy10129 12 IREVTEKCLSRIEEV-S---KLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPY 87 (135)
Q Consensus 12 ~~ev~~~~l~ri~~~-~---~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~~~ 87 (135)
.-+-.++++..++.. + .+||= .-++.-+..-+++. -....+++++=| +|+|.-.|....-+-.|.+
T Consensus 205 ~Gq~~~a~~~~l~~~~~~~vGlNCa--~Gp~~m~~~l~~ls-----~~~~~~vs~~PN---AGLP~~~g~~~~Y~~~p~~ 274 (311)
T COG0646 205 SGQTIEAFLNSLEHLGPDAVGLNCA--LGPDEMRPHLRELS-----RIADAFVSVYPN---AGLPNAFGERAVYDLTPEY 274 (311)
T ss_pred CCCcHHHHHHHhhccCCcEEeeccc--cCHHHHHHHHHHHH-----hccCceEEEeCC---CCCCcccCCccccCCCHHH
Confidence 334455666666655 3 34542 33333332222222 355666777655 7888888888766777778
Q ss_pred cHHHHHHHHhCC-CeEEe
Q psy10129 88 DATVVEKLKQSG-AIIVG 104 (135)
Q Consensus 88 da~vV~rL~~aG-ai~~g 104 (135)
-+..++.+.+.| +-++|
T Consensus 275 ~a~~~~~f~~~g~vnIvG 292 (311)
T COG0646 275 MAEALAEFAEEGGVNIVG 292 (311)
T ss_pred HHHHHHHHHHhCCceeec
Confidence 888999888888 77777
Done!