Query psy10129
Match_columns 135
No_of_seqs 198 out of 1185
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:37:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 3.3E-44 1.1E-48 293.8 13.7 133 1-133 11-149 (485)
2 2dc0_A Probable amidase; struc 100.0 2.2E-43 7.5E-48 285.6 14.2 130 1-133 6-142 (434)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.6E-43 5.4E-48 289.4 12.9 132 1-133 10-142 (478)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 3.2E-43 1.1E-47 287.1 10.1 130 1-133 6-136 (471)
5 3a2q_A 6-aminohexanoate-cyclic 100.0 1.3E-42 4.6E-47 284.7 11.4 129 1-133 13-145 (493)
6 1m22_A Peptide amidase, PAM; e 100.0 9.2E-42 3.1E-46 280.4 12.1 131 1-133 16-160 (503)
7 3ppm_A Fatty-acid amide hydrol 100.0 2.6E-40 8.8E-45 275.1 10.7 130 1-133 76-206 (573)
8 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 2.3E-40 7.9E-45 270.4 5.3 123 3-133 14-137 (476)
9 1o9p_A Malonamidase E2; malona 100.0 3.4E-38 1.2E-42 253.9 9.1 119 1-133 7-126 (414)
10 3a1k_A Amidase; AS family enzy 100.0 6.4E-37 2.2E-41 252.6 -1.6 131 2-133 19-166 (521)
11 3shg_B VBHA; ampylation, adeny 65.7 5.6 0.00019 23.1 2.7 24 2-25 36-59 (61)
12 4gic_A HDH, histidinol dehydro 39.4 4 0.00014 32.7 -1.1 105 6-111 249-365 (423)
13 1kae_A HDH, histidinol dehydro 37.5 10 0.00036 30.4 1.0 102 6-109 243-356 (434)
14 2vve_A Spike protein P1; viral 27.7 20 0.00068 25.1 1.0 13 54-66 123-135 (254)
15 4f4h_A Glutamine dependent NAD 27.0 22 0.00077 29.1 1.4 33 96-128 404-436 (565)
16 2b5b_A Defensin; antibiotic; N 27.0 38 0.0013 16.8 1.7 14 122-135 15-28 (36)
17 1nxu_A Hypothetical oxidoreduc 26.0 84 0.0029 24.0 4.4 40 88-129 120-159 (333)
18 1vbi_A Type 2 malate/lactate d 24.7 92 0.0032 23.9 4.4 40 88-129 119-158 (344)
19 1wtj_A Ureidoglycolate dehydro 24.5 99 0.0034 23.7 4.5 40 88-129 130-169 (343)
20 1xrh_A Ureidoglycolate dehydro 23.7 1E+02 0.0034 23.8 4.4 40 88-129 122-161 (351)
21 1tcv_A Purine-nucleoside phosp 23.5 56 0.0019 24.4 2.9 26 88-113 204-229 (287)
22 1z2i_A Malate dehydrogenase; s 23.4 97 0.0033 23.9 4.3 36 88-123 129-164 (358)
23 2hl0_A Threonyl-tRNA synthetas 22.8 93 0.0032 21.0 3.6 65 11-75 52-134 (143)
24 2w0c_L Protein 2; virus, membe 22.7 28 0.00095 25.2 1.0 13 54-66 204-216 (335)
25 1vsq_C Mannose-specific phosph 22.4 1.9E+02 0.0064 19.6 5.4 50 56-108 98-149 (165)
26 4h8a_A Ureidoglycolate dehydro 22.0 1.1E+02 0.0037 23.5 4.3 40 88-129 122-161 (339)
27 2x06_A L-sulfolactate dehydrog 21.5 90 0.0031 24.0 3.8 41 87-129 119-159 (344)
28 3q4g_A NH(3)-dependent NAD(+) 21.5 31 0.0011 25.7 1.1 33 97-129 161-193 (279)
29 3uoe_A Dehydrogenase; structur 21.5 1.1E+02 0.0039 23.6 4.3 37 88-124 143-179 (357)
30 1v9n_A Malate dehydrogenase; r 21.3 1.1E+02 0.0036 23.7 4.2 36 88-123 131-166 (360)
31 1ble_A Fructose permease; phos 21.2 1.7E+02 0.0058 19.8 4.8 50 56-108 96-147 (163)
32 1rfm_A L-sulfolactate dehydrog 20.6 97 0.0033 23.8 3.8 40 88-129 120-159 (344)
33 3eye_A PTS system N-acetylgala 20.3 2.1E+02 0.0073 19.5 5.7 52 56-110 100-153 (168)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=3.3e-44 Score=293.79 Aligned_cols=133 Identities=36% Similarity=0.538 Sum_probs=127.6
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhh-C----CCCCcceEeeeccccCCCcccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDE-K----TMLQGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~-~----~pL~GvP~~vKD~~~v~G~~tt 74 (135)
|+++|++|++|++||++++++||++. +.+|||+++++|+|+++|+++|.++ + .||+||||+|||||+++|++||
T Consensus 11 l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~gpL~GvPi~vKD~~~v~G~~tt 90 (485)
T 3ip4_A 11 LLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETT 90 (485)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCBTTBCCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCCCCcCCCEEEEEcCcccCCCccC
Confidence 46899999999999999999999999 9999999999999999999999876 3 3999999999999999999999
Q ss_pred cccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 75 CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 75 ~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+||+.+.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus 91 ~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~ 149 (485)
T 3ip4_A 91 CASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKA 149 (485)
T ss_dssp TTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTB
T ss_pred CCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999875
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-43 Score=285.61 Aligned_cols=130 Identities=24% Similarity=0.386 Sum_probs=123.6
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCC-----CCCcceEeeeccccCCCcccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKT-----MLQGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~-----pL~GvP~~vKD~~~v~G~~tt 74 (135)
|+++|++|++|++|+++++++||++. + +|+|+++++|+|+++|+++|.++++ ||+||||+|||+|+++|++||
T Consensus 6 l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt 84 (434)
T 2dc0_A 6 AKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTR 84 (434)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccC
Confidence 47899999999999999999999999 9 9999999999999999999986542 999999999999999999999
Q ss_pred cccccccCCCC-CCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 75 CASKMLENFIA-PYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 75 ~Gs~~~~~~~~-~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+||+.+ +++ .+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus 85 ~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~ 142 (434)
T 2dc0_A 85 AGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSR 142 (434)
T ss_dssp TTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTB
T ss_pred CCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCC
Confidence 999999 667 899999999999999999999999999999999999999999999865
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.6e-43 Score=289.41 Aligned_cols=132 Identities=41% Similarity=0.583 Sum_probs=127.1
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM 79 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~ 79 (135)
|+++|++|++|++||++++++||++. +.+|||+++++|+|+++|+++|.+ ..||+||||+|||+|+++|++||+||+.
T Consensus 10 l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~-~gpL~GvPi~vKD~~~~~G~~tt~Gs~~ 88 (478)
T 3h0l_A 10 LRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER-ELPLFGIPIAVKDNILVEGEKTTCASKI 88 (478)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT-TSTTTTCEEEEETTBCCTTSBCCTTCGG
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh-cCCcCCceEEEEcCccCCCCCcCCcCHh
Confidence 46899999999999999999999999 999999999999999999999876 4599999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus 89 ~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~ 142 (478)
T 3h0l_A 89 LENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLER 142 (478)
T ss_dssp GTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTB
T ss_pred hcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999875
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=3.2e-43 Score=287.14 Aligned_cols=130 Identities=37% Similarity=0.537 Sum_probs=125.4
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM 79 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~ 79 (135)
|+++|++|++|++||++++++||++. +.+|||++++ |+|+++|+++|.++ ||+||||+|||+|+++|++||+||+.
T Consensus 6 l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~--pL~GvPi~vKD~~~~~G~~tt~Gs~~ 82 (471)
T 3kfu_E 6 IRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGL--PLAGLVVAVKDNIATRGLRTTAGSRL 82 (471)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSC--TTTTCEEEEETTBCCTTSCCCTTCST
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccC--CcCCCeEEEECCcccCCccccccCHh
Confidence 46899999999999999999999999 9999999999 99999999998765 99999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus 83 ~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~ 136 (471)
T 3kfu_E 83 LENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDR 136 (471)
T ss_dssp TTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTB
T ss_pred HcCCCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCc
Confidence 999999999999999999999999999999999999999999999999999875
No 5
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=1.3e-42 Score=284.69 Aligned_cols=129 Identities=21% Similarity=0.225 Sum_probs=124.3
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccc-cCCCcccccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNF-CTRGIPTTCASK 78 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~-~v~G~~tt~Gs~ 78 (135)
|+++|++|++|++||++++++||++. +.+|||+++++|+|+++|++ | ..||+||||+||||| +++|++||+||+
T Consensus 13 l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d---~gpL~GvPi~vKD~~~~v~G~~Tt~Gs~ 88 (493)
T 3a2q_A 13 QAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A---SGPFAGVPYLLKDLTVVSQGDINTSSIK 88 (493)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C---CSTTTTCEEEEESSSSCCTTSBCCTTCH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c---CCCcCCcEEEEecCCcCcCCCcccccCh
Confidence 47899999999999999999999999 99999999999999999998 7 459999999999999 999999999999
Q ss_pred ccc--CCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 79 MLE--NFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 79 ~~~--~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
.+. ++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus 89 ~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~ 145 (493)
T 3a2q_A 89 GMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGR 145 (493)
T ss_dssp HHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTB
T ss_pred hhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCC
Confidence 999 9999999999999999999999999999999999999999999999999875
No 6
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=9.2e-42 Score=280.35 Aligned_cols=131 Identities=25% Similarity=0.378 Sum_probs=123.2
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh----cCcCeEEecChHHHHHHHHhhhhhhC-----CCCCcceEeeeccccCCCc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV----SKLNAFITVTKNEALCKATEIVKDEK-----TMLQGVTVAIKDNFCTRGI 71 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~----~~lna~~~~~~~~a~~~A~~~d~~~~-----~pL~GvP~~vKD~~~v~G~ 71 (135)
|+++|++|++|++||++++++||++. +.+|||+++++| |+++|+++|.+++ .||+||||+|||||+++|+
T Consensus 16 l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~ 94 (503)
T 1m22_A 16 LQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLLKDNINAAPM 94 (503)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCCTTS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeEeecccccCCC
Confidence 47899999999999999999999986 479999999998 9999999997653 2999999999999999999
Q ss_pred ccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCcccccc-----ccccCCCCCCcCCCCCCccc
Q psy10129 72 PTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM-----GLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 72 ~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~-----~~~~~n~~~G~~~NP~~~~~ 133 (135)
+||+||+.+.++++ +||++|+||+++|||++||||||||++ +.+|+|++||+|+||||+.+
T Consensus 95 ~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~ 160 (503)
T 1m22_A 95 ATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISH 160 (503)
T ss_dssp CCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTB
T ss_pred CcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999 999999999999999999999999998 78899999999999999875
No 7
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.6e-40 Score=275.10 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=121.2
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM 79 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~ 79 (135)
|+++|++|++|++||+++|++||++. +.+||++++.+| ++++|++.+.. .||+||||+|||||+++|++||+||..
T Consensus 76 l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~-a~~~a~~~~~~--gpL~GvPi~vKD~~~~~G~~tt~Gs~~ 152 (573)
T 3ppm_A 76 LVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-CETQLSQAPRQ--GLLYGVPVSLKECFSYKGHDSTLGLSL 152 (573)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-HHHHHHHCCTT--CTTTTCEEEEETTBCCBTCCCCTTCGG
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHH-HHHHHHhhhhc--CCcCCCeEEEEcccCCCCCCcCCcChh
Confidence 46789999999999999999999999 999999999876 56677666542 599999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+.++++.+||++|++|+++|||++||||||||+|+.+|.|+.||+|+||||+.+
T Consensus 153 ~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~ 206 (573)
T 3ppm_A 153 NEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSK 206 (573)
T ss_dssp GTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTB
T ss_pred hcCCCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999865
No 8
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=2.3e-40 Score=270.45 Aligned_cols=123 Identities=36% Similarity=0.501 Sum_probs=115.9
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccccc
Q psy10129 3 HAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLE 81 (135)
Q Consensus 3 ~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~~~ 81 (135)
++|++|++|++|+++++++||++. +.+|+|+++++|+|+ |+ ..||+||||+|||||+++|++||+||+.+.
T Consensus 14 ~li~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~--~gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~ 85 (476)
T 2gi3_A 14 ECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK--KGKFWGIPVAIKDNILTLGMRTTCASRILE 85 (476)
T ss_dssp HHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC--CSTTTTCEEEEETTBCCSSSCCCTTCGGGT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc--cCCcCCceEEEEcCccCCCCccCccChhhc
Confidence 348999999999999999999999 999999999988777 22 159999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 82 NFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 82 ~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus 86 ~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~ 137 (476)
T 2gi3_A 86 NYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLER 137 (476)
T ss_dssp TCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTB
T ss_pred CCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999865
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=3.4e-38 Score=253.94 Aligned_cols=119 Identities=27% Similarity=0.342 Sum_probs=110.0
Q ss_pred CHHHHHcCCCCHHHHHHHHHHHHHhh-cCcCeEEecChHHHHHHHHhhhhhhCCCCCcceEeeeccccCCCccccccccc
Q psy10129 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKM 79 (135)
Q Consensus 1 l~~~l~~g~~s~~ev~~~~l~ri~~~-~~lna~~~~~~~~a~~~A~~~d~~~~~pL~GvP~~vKD~~~v~G~~tt~Gs~~ 79 (135)
|+++|++|++|++|+++++++||++. +.+|||+++++|+| + ....||+||||+|||+|+++|++||+||+.
T Consensus 7 l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-------~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~ 78 (414)
T 1o9p_A 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-------QASGPLRGIAVGIKDIIDTANMPTEMGSEI 78 (414)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-------CSSSTTTTCEEEEETTBCCSSSCCCTTSGG
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-------ccCCCcCCCEEEEEcccccCCcccCcCCHh
Confidence 47899999999999999999999999 99999999998876 2 223499999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 80 LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 80 ~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
+.++++.+||++|+||+++|||++||||||||++ .|+ |+|+||||+.+
T Consensus 79 ~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~ 126 (414)
T 1o9p_A 79 YRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGH 126 (414)
T ss_dssp GTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTB
T ss_pred hccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCC
Confidence 9999999999999999999999999999999998 455 99999999875
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=6.4e-37 Score=252.56 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=112.2
Q ss_pred HHHHHcCCCCH-HHHHHHHHHHHHhh-cCcCeEE-ecChHHHHHHHHhhhh----------hh----CCCCCcceEeeec
Q psy10129 2 RHAINKNNISI-REVTEKCLSRIEEV-SKLNAFI-TVTKNEALCKATEIVK----------DE----KTMLQGVTVAIKD 64 (135)
Q Consensus 2 ~~~l~~g~~s~-~ev~~~~l~ri~~~-~~lna~~-~~~~~~a~~~A~~~d~----------~~----~~pL~GvP~~vKD 64 (135)
...|.+++++. +|+++.++++++++ +.+|+++ .+..+++ .++...|+ +. ..||+||||+|||
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPi~vKD 97 (521)
T 3a1k_A 19 GITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKD 97 (521)
T ss_dssp TCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTTCEEEEET
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCCCEEEEEc
Confidence 34567889999 99999999999988 6665665 5555444 44444443 11 1299999999999
Q ss_pred cccCCCcccccccccccCCCCCCcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCCCccc
Q psy10129 65 NFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFKLCLS 133 (135)
Q Consensus 65 ~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~~~~~ 133 (135)
||+++|++||+||+.+.++++.+||++|+||+++|||++||||||||+|+.+|+|++||+|+||||+.+
T Consensus 98 ~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~ 166 (521)
T 3a1k_A 98 NVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQR 166 (521)
T ss_dssp TBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEE
T ss_pred CcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999865
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=65.71 E-value=5.6 Score=23.06 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHh
Q psy10129 2 RHAINKNNISIREVTEKCLSRIEE 25 (135)
Q Consensus 2 ~~~l~~g~~s~~ev~~~~l~ri~~ 25 (135)
.+..-.|++|+.++.+.+.+|+.+
T Consensus 36 ~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 36 MERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Confidence 356678999999999999999874
No 12
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=39.45 E-value=4 Score=32.68 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=58.5
Q ss_pred HcCCCCHHHHHHHHHHHHHhhc-CcCeEEecChHHHHHHHHhhhhhhCC---------CC--CcceEeeeccccCCCccc
Q psy10129 6 NKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKT---------ML--QGVTVAIKDNFCTRGIPT 73 (135)
Q Consensus 6 ~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~a~~~A~~~d~~~~~---------pL--~GvP~~vKD~~~v~G~~t 73 (135)
.++.-.|.-++...+.++|.-+ ..-.+++.+.+-+.+...+++.+... .| +|.-|.++|.-+.-.+..
T Consensus 249 AD~~a~p~~vAaDLlsQAEHd~~a~~iLvT~s~~la~~V~~~i~~~l~~l~r~~i~~~sl~~~g~ii~v~~~~ea~~~~N 328 (423)
T 4gic_A 249 SDGRTDPDWIAMDLFSQAEHDEDAQAILISPDAAHLEAVQASIERLLPGMERAEVIRTSLERRGGMILVDDLEQAAAVAN 328 (423)
T ss_dssp ECSCSCHHHHHHHHHHHHTTCTTCEEEEEESCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHCEEEECSSHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHhhccCCCCeEEEEeCcHHHHHHHHHHHHHHHhhCccHHHHHHHHhcCceEEEEeehHHHHHHHH
Confidence 3556778999999999998774 34445566666555555555544332 23 577777777533333333
Q ss_pred ccccccccCCCCCCcHHHHHHHHhCCCeEEeecCcccc
Q psy10129 74 TCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111 (135)
Q Consensus 74 t~Gs~~~~~~~~~~da~vV~rL~~aGai~~gktn~~E~ 111 (135)
....--+.=... ....++.+++.+|+|++|.-...-+
T Consensus 329 ~~APEHLel~~~-~~~~~l~~i~nAGaIFlG~~tp~~~ 365 (423)
T 4gic_A 329 RIAPEHLELSVE-SPEVLVESIRNAGAIFMGRYTAEAL 365 (423)
T ss_dssp HHCCSEEEEESS-CHHHHGGGCCCCSEEEEC-------
T ss_pred hhChHHhhhhhC-CHHHHHhhCcEeceeecCCCCchhh
Confidence 333222221111 2245789999999999997654433
No 13
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=37.53 E-value=10 Score=30.35 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=56.6
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcCc-CeEEecChHHHHHHHHhhhhhhCC---------CC-CcceEeeeccccCCCcccc
Q psy10129 6 NKNNISIREVTEKCLSRIEEVSKL-NAFITVTKNEALCKATEIVKDEKT---------ML-QGVTVAIKDNFCTRGIPTT 74 (135)
Q Consensus 6 ~~g~~s~~ev~~~~l~ri~~~~~l-na~~~~~~~~a~~~A~~~d~~~~~---------pL-~GvP~~vKD~~~v~G~~tt 74 (135)
.++.-.|.-++...|.++|.-+.- -.+++.+.+-+.+..++++..... .| +-.-|.++|.-+.-.+...
T Consensus 243 AD~tAnp~~vAaDLLsQAEHd~~a~aiLvT~s~~la~~V~~ev~~ql~~lpr~~ia~~sl~~~~ii~v~~l~ea~~~~N~ 322 (434)
T 1kae_A 243 ADSGATPDFVASDLLSQAEHGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQ 322 (434)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCTTCEEEEEESCHHHHHHHHHHHHHHHTTCTTHHHHHHHHTTCEEEECSSHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHhccCCCCcEEEEECCHHHHHHHHHHHHHHHHhCChHHHHHHHHHcCeEEEECCHHHHHHHHHH
Confidence 355677888999999999876433 344555666555555555554332 11 1123444443222222222
Q ss_pred cccccccCCCCCCc-HHHHHHHHhCCCeEEeecCcc
Q psy10129 75 CASKMLENFIAPYD-ATVVEKLKQSGAIIVGKTNMD 109 (135)
Q Consensus 75 ~Gs~~~~~~~~~~d-a~vV~rL~~aGai~~gktn~~ 109 (135)
...--+.=. ..| -.++.+++.+|+|++|.-...
T Consensus 323 ~APEHLel~--~~dp~~~l~~I~nAGaIFlG~~tpe 356 (434)
T 1kae_A 323 YGPEHLIIQ--TRNARELVDSITSAGSVFLGDWSPE 356 (434)
T ss_dssp HCCSEEEEE--STTHHHHGGGCCSCSEEEESTTCCH
T ss_pred hhhHhhhhh--hcCHHHHHhhcCcccchhcCCCCch
Confidence 222212111 123 357899999999999975543
No 14
>2vve_A Spike protein P1; viral stem-receptor binding domain, viral protein; 1.77A {Pseudoalteromonas phage PM2} PDB: 2vvd_A
Probab=27.74 E-value=20 Score=25.08 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=11.0
Q ss_pred CCCcceEeeeccc
Q psy10129 54 MLQGVTVAIKDNF 66 (135)
Q Consensus 54 pL~GvP~~vKD~~ 66 (135)
-|+||||++|.-+
T Consensus 123 eldgvpfslkarv 135 (254)
T 2vve_A 123 ELDGVPFSLKARV 135 (254)
T ss_dssp GGTTCCEEEEEEE
T ss_pred ccCCCcceeeeee
Confidence 3899999999864
No 15
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=27.02 E-value=22 Score=29.12 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=24.6
Q ss_pred HhCCCeEEeecCccccccccccCCCCCCcCCCC
Q psy10129 96 KQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEF 128 (135)
Q Consensus 96 ~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP 128 (135)
.+.|++++|+.|..|++.|..|-+-..+--.||
T Consensus 404 n~~g~lvlgTgn~sE~a~Gy~T~~Gd~~~~~~p 436 (565)
T 4f4h_A 404 NKFGSIVLTTGNKSEMAVGYCTLYGDMAGGFAV 436 (565)
T ss_dssp HHHCCEEEECCCHHHHHHTCSCTTTTTCSSEET
T ss_pred hhcCCcccCCCchhhHhhccccccCCcccCchh
Confidence 366999999999999999988765444333343
No 16
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=27.02 E-value=38 Score=16.80 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=11.0
Q ss_pred CCcCCCCCCcccCC
Q psy10129 122 LGLQSEFKLCLSYL 135 (135)
Q Consensus 122 ~G~~~NP~~~~~~~ 135 (135)
+-++.-|||+..|+
T Consensus 15 herptlpyncgkyi 28 (36)
T 2b5b_A 15 HERPTLPYNCGKYI 28 (36)
T ss_dssp SCCSSCSSSBCCSS
T ss_pred cCCCCcCccCCceE
Confidence 45667899999985
No 17
>1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural genomics, PSI, protein structure initiative; 1.80A {Escherichia coli} SCOP: c.122.1.1 PDB: 1s20_A*
Probab=26.01 E-value=84 Score=24.02 Aligned_cols=40 Identities=13% Similarity=-0.087 Sum_probs=26.0
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
=+..+.++-++|.|-+.-||.+-...-.-+..+.+|+ ||+
T Consensus 120 ~g~y~~~aa~~Gligi~~tns~~~vaP~Gg~~~~lGT--NPi 159 (333)
T 1nxu_A 120 GGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGT--NPL 159 (333)
T ss_dssp THHHHHHHHHTTCEEEEEECCSSCBCCTTBSSCCBCC--CCE
T ss_pred cHHHHHHHHHCCCEEEEEeCCCCeeCCCCCCCCcccC--CCe
Confidence 4568889999999999999985443222234444553 553
No 18
>1vbi_A Type 2 malate/lactate dehydrogenase; malate dehydrogenase, NAD(P) binding protein, thermus thermo HB8, structural genomics; HET: NAD; 1.80A {Thermus thermophilus} PDB: 1x0a_A
Probab=24.67 E-value=92 Score=23.90 Aligned_cols=40 Identities=23% Similarity=0.087 Sum_probs=26.0
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
=+..+.++-++|.|-+.-||.+-...-.-+..+.+|+ ||+
T Consensus 119 ~g~y~~~aa~~Gligi~~tns~~~vaP~Gg~~~~lGT--NPi 158 (344)
T 1vbi_A 119 AGLYAEKLAREGFVAWVTTNAEPDVVPFGGREKALGT--NPL 158 (344)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSCCBCCTTCSSCCBCC--CCE
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCeeCCCCCCCCccCC--CCe
Confidence 3567888889999999999975443222334455554 554
No 19
>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme, oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB: 2cwf_A* 2cwh_A*
Probab=24.48 E-value=99 Score=23.74 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=26.1
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
=+..+.++-++|.|-+.-||.+-...-.-+..+.+|+ ||+
T Consensus 130 ~g~y~~~aa~~Gligi~~tNs~~~vaP~Gg~~~~lGT--NPi 169 (343)
T 1wtj_A 130 LWPDVEPFAEQGLVALSMVNSMTCVVPHGARQPLFGT--NPI 169 (343)
T ss_dssp SHHHHHHHHHTTCEEEEECCCCSCBCCTTCSSCCBCC--CCE
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCeeCCCCCCCCcccC--CCE
Confidence 4567888889999999999875443222334445554 554
No 20
>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI; 2.25A {Escherichia coli} SCOP: c.122.1.1
Probab=23.72 E-value=1e+02 Score=23.79 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=26.2
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
=+..+.++-++|.|-+.-||.+-...-.-+..+.+|+ ||+
T Consensus 122 ~g~y~~~aa~~Gligi~~tNs~~~vaP~Gg~~~~lGT--NPi 161 (351)
T 1xrh_A 122 ISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGT--NPL 161 (351)
T ss_dssp THHHHHHHHHTTSEEEEEECCCCCBCCTTBSSCCSCC--CCE
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCeeCCCCCCCCcccC--CCe
Confidence 4568889999999999999985443222334445553 554
No 21
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A*
Probab=23.45 E-value=56 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=21.7
Q ss_pred cHHHHHHHHhCCCeEEeecCcccccc
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAM 113 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~ 113 (135)
+..-++.++..||..+|.+.+||...
T Consensus 204 T~aE~~~~r~~Gad~VgMe~~~ea~v 229 (287)
T 1tcv_A 204 TPAECTMLLNMGCDVVGMSTIPEVVI 229 (287)
T ss_dssp CHHHHHHHHHTTCSEEESSSHHHHHH
T ss_pred CHHHHHHHHHcCCcEEcccHHHHHHH
Confidence 33458899999999999999999763
No 22
>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens}
Probab=23.42 E-value=97 Score=23.93 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=23.7
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLG 123 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G 123 (135)
=+..+.++-++|.|-+.-||.+-...-.-+..+.+|
T Consensus 129 ~g~y~~~aa~~Gligi~~tNs~~~vaP~Gg~~~~lG 164 (358)
T 1z2i_A 129 AGAYALEAARQGYIGLAFCNSDSFVRLHDGAMRFHG 164 (358)
T ss_dssp THHHHHHHHHTTSEEEEEECCSCCBCCTTBSSCCBC
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCeeCCCCCCCCccC
Confidence 456888899999999999997544322223334444
No 23
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=22.80 E-value=93 Score=20.99 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHhh-cC---cCeEEec---------ChHHHHHHHHhhhhhhCC---CCCcceEe-eecc-ccCCCcc
Q psy10129 11 SIREVTEKCLSRIEEV-SK---LNAFITV---------TKNEALCKATEIVKDEKT---MLQGVTVA-IKDN-FCTRGIP 72 (135)
Q Consensus 11 s~~ev~~~~l~ri~~~-~~---lna~~~~---------~~~~a~~~A~~~d~~~~~---pL~GvP~~-vKD~-~~v~G~~ 72 (135)
++..+++...+.|..+ .. -+.+++. .++.|.+..+.+..++.. ...-.||+ -|.- +.++|+|
T Consensus 52 ~~~~vv~~av~eI~~~a~kv~~~~ivlYPyAHLSs~La~P~~A~~iL~~le~~L~~~g~eV~raPFGwyK~F~i~ckGHP 131 (143)
T 2hl0_A 52 NPEEVSLKAIEEISKVAEQVKAENVFVYPFAHLSSELAKPSVAMDILNRVYQGLKERGFNVGKAPFGYYKAFKISCKGHP 131 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGCSSBCCHHHHHHHHHHHHHHHHHTTCEEEECCSSEEEEEEEEECCCT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCccCChHHHHHHHHHHHHHHHhCCCeEEEeCCccceeEEEEecCcc
Confidence 5678888888888776 32 2334442 467787777777665543 34555666 6775 8889998
Q ss_pred ccc
Q psy10129 73 TTC 75 (135)
Q Consensus 73 tt~ 75 (135)
-.-
T Consensus 132 LsE 134 (143)
T 2hl0_A 132 LAE 134 (143)
T ss_dssp TSE
T ss_pred HHH
Confidence 653
No 24
>2w0c_L Protein 2; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=22.69 E-value=28 Score=25.23 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=11.0
Q ss_pred CCCcceEeeeccc
Q psy10129 54 MLQGVTVAIKDNF 66 (135)
Q Consensus 54 pL~GvP~~vKD~~ 66 (135)
-|+||||++|.-+
T Consensus 204 eldgvpfslkarv 216 (335)
T 2w0c_L 204 ELDGVPFSLKARV 216 (335)
T ss_dssp GGTTCCEEEEEEE
T ss_pred ccCCCcceeeeee
Confidence 3899999999854
No 25
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=22.42 E-value=1.9e+02 Score=19.64 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=36.4
Q ss_pred CcceEeeeccccCCCcccccccccccCCCC--CCcHHHHHHHHhCCCeEEeecCc
Q psy10129 56 QGVTVAIKDNFCTRGIPTTCASKMLENFIA--PYDATVVEKLKQSGAIIVGKTNM 108 (135)
Q Consensus 56 ~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~--~~da~vV~rL~~aGai~~gktn~ 108 (135)
.|+| +|. +.+-|+...-|...+...+. .+|-...+.|.+.|.-+.-+..-
T Consensus 98 ~Gv~--i~~-iNvG~m~~~~gk~~i~~~v~v~~ed~~~lk~L~~~Gv~v~~q~vP 149 (165)
T 1vsq_C 98 GGVK--ITS-VNVGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNARGIELEVRKVS 149 (165)
T ss_dssp TTCC--CSE-EEEEECCCCTTSEECSSSCEECHHHHHHHHHHHHTTCEEEECSST
T ss_pred cCCC--CCE-EEECCCcCCCCCeEEeccEeeCHHHHHHHHHHHHCCCEEEEEECC
Confidence 5777 443 67777777777776655544 57888999999999988776653
No 26
>4h8a_A Ureidoglycolate dehydrogenase; rossmann fold, oxidoreductase; HET: NAI; 1.64A {Escherichia coli} PDB: 4fju_A* 4fjs_A* 1xrh_A
Probab=22.00 E-value=1.1e+02 Score=23.45 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=26.5
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
=+..++++-++|.|-+.-||.+-...-.-+..+.+|+ ||+
T Consensus 122 ~g~y~~~aa~~Gligi~~tNs~p~vaP~Gg~~~~lGT--NPi 161 (339)
T 4h8a_A 122 ISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGT--NPL 161 (339)
T ss_dssp THHHHHHHHHTTSEEEEEECCCSCBCCTTBSSCCBCC--CCE
T ss_pred hHHHHHHHHHCCCEEEEEeCCCCeeCCCCCCCCCcCC--CCe
Confidence 4578889999999999999876543322334445553 553
No 27
>2x06_A L-sulfolactate dehydrogenase; oxidoreductase, hyperthermostable, coenzyme M, methanogens, coenzyme M biosynthesis; HET: NAD; 2.50A {Methanocaldococcus jannaschii}
Probab=21.51 E-value=90 Score=24.00 Aligned_cols=41 Identities=15% Similarity=-0.058 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 87 YDATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 87 ~da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
.=+..+.++-++|.|-++-||.+-...-.-+..+.+|+ ||+
T Consensus 119 ~~g~y~~~aa~~Gligi~~tn~~p~vaP~Gg~~~~~GT--NPi 159 (344)
T 2x06_A 119 IAGYYSELAMNQDMIGITITNTEPAMAPFGGKEKILGT--NPI 159 (344)
T ss_dssp CTHHHHHHHHTTTSEEEEEECCSSCBCCTTBCSCCBCC--CEE
T ss_pred chHHHHHHHHhcCcEEEEecCCCceeeccCCcCcccCC--CCe
Confidence 35678888899999999999987543323334445553 554
No 28
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=21.48 E-value=31 Score=25.72 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=25.3
Q ss_pred hCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 97 QSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 97 ~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
..|++++|..|..|...|..|.....+.-.+|.
T Consensus 161 ~~g~lVlgTgn~sE~~~Gy~TkyGD~~~di~Pl 193 (279)
T 3q4g_A 161 YVGGLVLGTDHSAENITGFYTKFGDGACDLAPL 193 (279)
T ss_dssp HHTEEEBCCCCHHHHHHTCSCTTTTTCCSBCTT
T ss_pred HCCCEEecCccHHhhhccchhhcCCcccceeec
Confidence 569999999999999988766555445556665
No 29
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.31A {Sinorhizobium meliloti}
Probab=21.47 E-value=1.1e+02 Score=23.58 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=25.2
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCc
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGL 124 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~ 124 (135)
=+..++++-++|.|-+.-||.+-...-.-+..+.+|+
T Consensus 143 ~g~y~~~aa~~Gligi~~tns~p~vaP~GG~~~~lGT 179 (357)
T 3uoe_A 143 LAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGT 179 (357)
T ss_dssp THHHHHHHHHTTCEEEEEECCSSCBCCTTBCSCCBCC
T ss_pred hHHHHHHHHHCCCEEEEEcCCCCeeCCCCCCCCCcCC
Confidence 4678889999999999999976553323334444553
No 30
>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiati structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii}
Probab=21.27 E-value=1.1e+02 Score=23.73 Aligned_cols=36 Identities=17% Similarity=-0.012 Sum_probs=23.5
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLG 123 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G 123 (135)
=+..+.++-++|.|-+.-||.+-...-.-+..+.+|
T Consensus 131 ~g~y~~~aa~~Gligi~~tNs~p~vaP~Gg~~~~lG 166 (360)
T 1v9n_A 131 AGYYALMAAEEGMIGISMTNSRPLVAPTGGIERILG 166 (360)
T ss_dssp THHHHHHHHTTTSEEEEEECCSSCBCCTTCCSCCBC
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCeeCCCCCCCCccc
Confidence 456788888999999999998544322223334444
No 31
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=21.22 E-value=1.7e+02 Score=19.84 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=36.4
Q ss_pred CcceEeeeccccCCCcccccccccccCCCC--CCcHHHHHHHHhCCCeEEeecCc
Q psy10129 56 QGVTVAIKDNFCTRGIPTTCASKMLENFIA--PYDATVVEKLKQSGAIIVGKTNM 108 (135)
Q Consensus 56 ~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~--~~da~vV~rL~~aGai~~gktn~ 108 (135)
.|+| +|. +.+-|+...-|...+...+. ++|-...+.|.+.|.-+.-+..-
T Consensus 96 ~Gv~--i~~-iNvG~m~~~~gk~~i~~~v~v~~ed~~~l~~L~~~Gv~v~~q~vP 147 (163)
T 1ble_A 96 AGVP--IKT-VNVGGMRFENHRRQITKSVSVTEQDIKAFETLSDKGVKLELRQLP 147 (163)
T ss_dssp TTCC--CCE-EEEEEBCCCTTSEECSSSBEECHHHHHHHHHHHHTTCEEEECSST
T ss_pred cCCC--CCE-EEECCCCCCCCCeEEeccEeeCHHHHHHHHHHHHCCCEEEEEECC
Confidence 5777 554 67777777777776655544 57888999999999988776653
No 32
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M, hyperthermostable, Pro-S hydrogen transfer; HET: NAD; 2.50A {Methanocaldococcus jannaschii} PDB: 2x06_A*
Probab=20.56 E-value=97 Score=23.80 Aligned_cols=40 Identities=15% Similarity=-0.054 Sum_probs=27.1
Q ss_pred cHHHHHHHHhCCCeEEeecCccccccccccCCCCCCcCCCCC
Q psy10129 88 DATVVEKLKQSGAIIVGKTNMDEFAMGLVVRILWLGLQSEFK 129 (135)
Q Consensus 88 da~vV~rL~~aGai~~gktn~~E~~~~~~~~n~~~G~~~NP~ 129 (135)
=+..++++-++|.|-+.-||.+-...-.-+..+.+|+ ||+
T Consensus 120 ~g~y~~~aa~~Gligi~~tNs~p~vaP~Gg~~~~lGT--NPi 159 (344)
T 1rfm_A 120 AGYYSELAMNQDMIGITITNTEPAMAPFGGKEKILGT--NPI 159 (344)
T ss_dssp THHHHHHHHTTTSEEEEEECCSSCBCCTTBCSCCBCC--CEE
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCeeCCCCCCCCCcCC--CCe
Confidence 4578889999999999999987553333344455554 553
No 33
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=20.32 E-value=2.1e+02 Score=19.50 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=37.7
Q ss_pred CcceEeeeccccCCCcccccccccccCCCC--CCcHHHHHHHHhCCCeEEeecCccc
Q psy10129 56 QGVTVAIKDNFCTRGIPTTCASKMLENFIA--PYDATVVEKLKQSGAIIVGKTNMDE 110 (135)
Q Consensus 56 ~GvP~~vKD~~~v~G~~tt~Gs~~~~~~~~--~~da~vV~rL~~aGai~~gktn~~E 110 (135)
.|+|| +.+.+-|+...-|.+.+...+. ++|-...+.|.+.|.-+.-+..-.+
T Consensus 100 ~Gv~i---~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~lk~L~~~Gv~v~~q~vP~d 153 (168)
T 3eye_A 100 GGIDL---KDVNVGNMHFSEGKKQISSKVYVDDQDLTDLRFIKQRGVNVFIQDVPGD 153 (168)
T ss_dssp TTCCC---CEEEECCBCCCTTCEEEETTEEECHHHHHHHHHHHHTTCEEEECSSTTS
T ss_pred cCCCC---CEEEECCCcCCCCCEEEeccEeeCHHHHHHHHHHHHCCCEEEEEECcCC
Confidence 45554 3577778888788777655544 6788899999999998887766443
Done!