RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10129
(135 letters)
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 183 bits (466), Expect = 5e-57
Identities = 69/115 (60%), Positives = 84/115 (73%), Gaps = 5/115 (4%)
Query: 5 INKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATE----IVKDEKTMLQGVT 59
+ IS E+T+ L RIEEV KLNAFITVT+ EAL +A + E L G+
Sbjct: 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGEAGPLAGIP 60
Query: 60 VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
+AIKDN CT+GI TTCASK+LEN++ PYDATVVEKLK +GA+I+GKTNMDEFAMG
Sbjct: 61 IAIKDNICTKGIRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMG 115
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 158 bits (401), Expect = 2e-47
Identities = 66/115 (57%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
+R + K ISI+EV E L RIE K+NAF+ VT +AL +A ++ K T L G+
Sbjct: 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIP 60
Query: 60 VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
+A+KDN T+GI TTCASK+LEN+I PYDATV+E+LKQ+GA+I+GKTNMDEFAMG
Sbjct: 61 IAVKDNISTKGIVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAMG 115
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 153 bits (389), Expect = 2e-45
Identities = 55/124 (44%), Positives = 74/124 (59%), Gaps = 8/124 (6%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTM----- 54
+ + +S E+ E L+RIE + LNAF+ V AL A D +
Sbjct: 12 LAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPL 71
Query: 55 --LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
L GV +A+KDN T G+PTT SK LE+++ PYDATVVE+L+ +GA+I+GKTNMDEFA
Sbjct: 72 GPLAGVPIAVKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFA 131
Query: 113 MGLV 116
MG
Sbjct: 132 MGSS 135
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 142 bits (361), Expect = 8e-42
Identities = 55/108 (50%), Positives = 70/108 (64%), Gaps = 5/108 (4%)
Query: 14 EVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEI----VKDEKTMLQGVTVAIKDNFCT 68
E+ E L R E KLNAF+TV EAL +A + EK L GV +++KDN
Sbjct: 1 ELVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEKGPLHGVPISLKDNIDV 60
Query: 69 RGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGLV 116
+G+PTT SK LE + PYDATVVE+L+ +GA+I+GKTNMDEFAMG
Sbjct: 61 KGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGST 108
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 104 bits (262), Expect = 2e-27
Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 2 RHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKT----MLQG 57
A+ +S E+ E L+R ++ LNAF TV AL A I +L G
Sbjct: 17 AAALRSGRLSCLELVEALLARAAALAPLNAFTTVDAEGALAAARRIDAQRAAGAALLLAG 76
Query: 58 VTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
V + IKDN T G+PTT + L F+ DA VV++L +GA+ +GK NM E A G
Sbjct: 77 VPIVIKDNINTAGMPTTAGTPALLGFVPATDAPVVQRLLDAGAVPLGKANMHELAFG 133
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 95.8 bits (239), Expect = 4e-24
Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKT-----M 54
I A+ +S R V + L+RI + +LNAF VT AL +A I
Sbjct: 12 IAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGP 71
Query: 55 LQGVTVAIKDNFCTRGIPTTCASKML-ENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
L GV A+K+ F G+ T SK+ + A DAT V +L+ +GA++VG NMDE+A
Sbjct: 72 LAGVPFAVKNLFDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAY 131
Query: 114 GLV 116
G
Sbjct: 132 GFT 134
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 94.5 bits (236), Expect = 1e-23
Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFIT-VTKNEALCKATEI-VKDEKTM-LQG 57
+R A ++ R V +RI V +I + + L +A + +D + L G
Sbjct: 12 LRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYG 71
Query: 58 VTVAIKDNFCTRGIPTTCASKMLENFIAP---Y----DATVVEKLKQSGAIIVGKTNMDE 110
V A+KDN G+PTT A P Y DATVV +L+ +GAI++GKTN+D+
Sbjct: 72 VPFAVKDNIDVAGLPTTAA--------CPAFAYTPERDATVVARLRAAGAIVIGKTNLDQ 123
Query: 111 FAMGLV-VR 118
FA GLV R
Sbjct: 124 FATGLVGTR 132
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 86.6 bits (215), Expect = 7e-21
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 4 AINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVK-----DEKTMLQG 57
A+ ++S RE E L+R++ V+ +NA + EAL +A + D+ L G
Sbjct: 16 AVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAG 75
Query: 58 VTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
V V +K N G TT ++ ++ IAP D+ VV+ L+++GA+I+G+TN F+
Sbjct: 76 VPVTVKVNVDQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSY 131
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 84.8 bits (210), Expect = 2e-20
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEVSK-LNAFITVTKNEALCKATEIVKD-----EKTM 54
I AI +S R V E L+RI + LNAF VT AL A I D
Sbjct: 5 IAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGP 64
Query: 55 LQGVTVAIKDNFCTRGIPTTCASKM-LENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
L GV A+K+ F G+ T +K+ + A DAT+V++L +GA++VG NMDEFA
Sbjct: 65 LAGVPFAVKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAY 124
Query: 114 GLV 116
G
Sbjct: 125 GFT 127
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 84.3 bits (209), Expect = 4e-20
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 4 AINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTM-------L 55
AI + +S EV L+ IE V+ +NA + + +AL A KD L
Sbjct: 20 AIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDAL-LAEAAEKDAALARGEYRGWL 78
Query: 56 QGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
G+ A KD T+GI TT S + + + DA VVE+++ +GAI +GKTN EF +G
Sbjct: 79 HGMPQAPKDLAPTKGIRTTLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLG 137
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 80.7 bits (199), Expect = 8e-19
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 10 ISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKAT----EIVKDEKTMLQGVTVAIKD 64
++ + E L RIE + S L A+ V + A +A + E+ L GV +AIKD
Sbjct: 23 LTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERLPLLGVPIAIKD 82
Query: 65 NFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
+ G TT S A DA VV +L+ +GA+I+GKTN+ E +
Sbjct: 83 DVDVAGEVTTYGSAG-HGPAATSDAEVVRRLRAAGAVIIGKTNVPELMI 130
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 80.8 bits (200), Expect = 8e-19
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 4 AINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATE----IVKDEKTMLQGV 58
A+ +S E+T+ ++RIE K+NA + + A A + E+ L G+
Sbjct: 20 ALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGI 79
Query: 59 TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNM 108
V +K++F G+PTT L +++ DA V +LK +GA+I+GKTN+
Sbjct: 80 PVTVKESFNVAGLPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILGKTNV 129
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 80.1 bits (198), Expect = 2e-18
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 55 LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
L GV A+KDN G+PTT A + DATVV L+ +GAI+VGKTN+D+FA G
Sbjct: 32 LYGVPFAVKDNIDVAGLPTTAACPAFA-YTPEEDATVVALLRAAGAIVVGKTNLDQFATG 90
Query: 115 LV 116
LV
Sbjct: 91 LV 92
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 74.7 bits (184), Expect = 1e-16
Identities = 32/78 (41%), Positives = 42/78 (53%)
Query: 37 KNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLK 96
KN A+ + ++ L IKDNF T PT +SK LENF Y+ATVV+KL
Sbjct: 19 KNNAVSYVFDEKNNKDGPLANCVFTIKDNFATSEGPTHASSKSLENFKPSYNATVVQKLI 78
Query: 97 QSGAIIVGKTNMDEFAMG 114
+GA V K + DE +G
Sbjct: 79 NAGAKPVAKVHCDELGLG 96
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 73.2 bits (180), Expect = 3e-16
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 10 ISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATE----IVKDEKTMLQGVTVAIKD 64
++ E+ + L RIE LNAF V AL +A E ++ L GV +A+KD
Sbjct: 32 VTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAVKD 91
Query: 65 NFCTRGIPTT--CASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
+ G+PT A E A D+ VV +L+ +GA+IVGKTN E
Sbjct: 92 DVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNTCEL 137
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 73.1 bits (180), Expect = 3e-16
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 14 EVTEKCLSRIEEVSK-LNAFITVTKNEALCKATEIVKDEKTM-------LQGVTVAIKDN 65
E T+ L RI+ +NAF V AL A +E+ L GV V+IKD
Sbjct: 25 EATQAVLDRIDRRDPAVNAFCLVDAEGALAAARA--SEERWRRGEPCGLLDGVPVSIKDI 82
Query: 66 FCTRGIPTTCASKMLENFIAPY--DATVVEKLKQSGAIIVGKTNMDEFA 112
F TRG PT S+ + P+ DA V +L+++GA+++GKT EF
Sbjct: 83 FLTRGWPTLRGSR-AIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFG 130
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 72.7 bits (179), Expect = 5e-16
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 55 LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
L G TVA+KDN G+P S LE F+ +DATVV +L +GA IVGK ++
Sbjct: 88 LAGKTVALKDNVAVAGVPMMNGSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLCF 146
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 72.4 bits (178), Expect = 6e-16
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 14 EVTEKCLSRIEEVSKLNAFITVTKNEALCKA---TEIVKDEKT--MLQGVTVAIKDNFCT 68
+V E+ L I + FI++T+ A+ +A + + ++ +L G+ +A KD F
Sbjct: 24 QVAEQALDAIASYADQAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDV 83
Query: 69 RGIPTTCASKMLENFI-APYDATVVEKLKQSGAIIVGKTNMDEFA 112
G TT S +L N A DA VV L ++G + +G+TNM EFA
Sbjct: 84 AGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFA 128
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 71.5 bits (176), Expect = 1e-15
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 11 SIREVTEKCLSRIEEVSKLNA--FITVTKNEALCKATEI-----VKDEKTMLQGVTVAIK 63
+ R + E L+RI + + A F V + A A + L G+ V++K
Sbjct: 21 TSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVK 80
Query: 64 DNFCTRGIPTTCASKMLE-NFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
D F G T S++L A DA V +L+++GA+++G+TNM EFA
Sbjct: 81 DLFDVAGQVTRAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFA 130
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 70.6 bits (173), Expect = 3e-15
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 8 NNISIREVTEKCLSRIEEVS----KLNAFITVTKNEALCKATEI---VKDEKTM--LQGV 58
++T L RI + +LNA I + + A A + K K L G+
Sbjct: 18 GAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGI 76
Query: 59 TVAIKDNF-CTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
V +KDN +PTT S L DA +V +L+ +GA+I+GK N+ E+A
Sbjct: 77 PVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWA 131
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 68.5 bits (167), Expect = 1e-14
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 8/122 (6%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEVSK----LNAFITVTKNEALCKATEIVKDE---KT 53
++ I +S +E+ L+RI++ + LNA IT + +A ++ K+ K+
Sbjct: 170 LQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNA-ITEINPTIIAEAEQLDKENTTNKS 228
Query: 54 MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
L G+ V +KDN T+ +PT+ + L++++ DAT+VE LK +GA+I+GKTNM E+A
Sbjct: 229 ALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAA 288
Query: 114 GL 115
G+
Sbjct: 289 GM 290
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 67.2 bits (164), Expect = 5e-14
Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEVSK----LNAFITVTKN---EALCKATEIVKDEKT 53
++ I+ +S E+T L RI+E + LN+ + N EA E +++K+
Sbjct: 76 LQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPNAMEEARKLDQERSRNKKS 135
Query: 54 MLQGVTVAIKDNFCT-RGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
L G+ V +KDN T + +PT+ + +L+++IA DAT+V++LK+ GA ++GK NM E+A
Sbjct: 136 NLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEWA 195
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 64.2 bits (157), Expect = 4e-13
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 14 EVTEKCLSRIEEVS-KLNAFITVTKNEAL--CKATEI--VKDE-KTMLQGVTVAIKDNFC 67
EVTE L+ I LNA A +A+ K E L GV V IK+N
Sbjct: 25 EVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIA 84
Query: 68 TRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
TRG+P + + A DA +L+++GA+I+ KT M ++ M
Sbjct: 85 TRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGM 130
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 62.5 bits (152), Expect = 2e-12
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 55 LQGVTVAIKDNFCTRGIPTTCASKMLENFI-APYDATVVEKLKQSGAIIVGKTNMDEFA 112
L G V+IKD F G PT S + + A DA +V++L+ +GA+I+GKT+M EFA
Sbjct: 46 LDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEFA 104
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 60.9 bits (148), Expect = 6e-12
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV------SKLNAFITVTKNEALCKATEIVKDEKTM 54
+R A+ + E+ + L+RI+ + LNA + V +AL +A D +
Sbjct: 12 LRAALESGRTTAVELVKAYLARIDAYDGPATGTALNA-VVVRNPDALKEAEA--SDARRA 68
Query: 55 -------LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTN 107
L G+ KD++ +G+ S ++ +A DA +E+L+ +GAI +GKTN
Sbjct: 69 RGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTN 128
Query: 108 MDEFAMG 114
M A G
Sbjct: 129 MPPMANG 135
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 59.8 bits (145), Expect = 1e-11
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 11/125 (8%)
Query: 1 IRHAINKNNISIREVTEKCLSRI----EEVSKLNAFITVTKNEALCKATEIVKDEKT--- 53
I+ A+ ++ +E+ L RI ++ K+N+ + + +A+ A + + K
Sbjct: 18 IQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINP-DAIFIAEALDHERKIKGV 76
Query: 54 --MLQGVTVAIKDNFCTRG-IPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDE 110
L G+ V +KDN T + T+ + LE I+ DA +V KL+++GA+I+GK NM E
Sbjct: 77 RGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANMTE 136
Query: 111 FAMGL 115
A +
Sbjct: 137 LANFM 141
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 56.4 bits (136), Expect = 2e-10
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 4 AINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTM-LQGVTVA 61
A+ + ++ E+ + + + ++++ LNA ++ EAL +A + +D GV +
Sbjct: 12 AVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQ--RDFSGKPFAGVPIF 69
Query: 62 IKD-NFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
+KD +G +T S++ +N+ A V++L+ G II+G++N EF
Sbjct: 70 LKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEF 120
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 56.5 bits (137), Expect = 2e-10
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 4 AINKNNISIREVTEKCLSRIEEVS-KLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAI 62
AI +S EV E ++R E V+ LNA + A +A + GV I
Sbjct: 23 AIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRA-ARPGSQGGFFSGVPTFI 81
Query: 63 KDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
KDN G+PT S A D+ + +G I +GKT + EF
Sbjct: 82 KDNVDVAGLPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEF 130
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 50.4 bits (121), Expect = 3e-08
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 55 LQGVTVAIKDNFCTRGIPTTCAS--KMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
L G+ A+KD F G T C + + E+ +A A VEKL +GA VGKT DE A
Sbjct: 26 LAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDELA 85
Query: 113 MGL 115
L
Sbjct: 86 FSL 88
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 33.3 bits (76), Expect = 0.022
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 55 LQGVTVAIKDNFCTRGIPTTCASK--MLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
L G+T A+KD F G T + + A A V + + GA VGKT MDE A
Sbjct: 27 LHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIMDEMA 86
>gnl|CDD|216606 pfam01616, Orbi_NS3, Orbivirus NS3. The function of this
Orbivirus non structural protein is uncertain. However
it may play a role on release of the virus from
infected cells.
Length = 194
Score = 28.9 bits (65), Expect = 0.62
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 44 ATEIVKDEKTMLQGVTVAIKDNFCTRGI 71
ATE K EK A++D+ TR I
Sbjct: 39 ATEAQKREKAAFGAAAEALRDDEPTRQI 66
>gnl|CDD|169981 PRK09577, PRK09577, multidrug efflux protein; Reviewed.
Length = 1032
Score = 28.3 bits (63), Expect = 1.4
Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Query: 79 MLENFIAPYDATVVEKLKQ-SGAII 102
M+E ++PYDAT V+ +KQ SGAI+
Sbjct: 419 MVEEGLSPYDAT-VKAMKQISGAIV 442
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 26.7 bits (59), Expect = 4.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 8 NNISIREVTEKCLSRIEEVSKLNAFI 33
N+ SIR + KCLS+ +++ K AF+
Sbjct: 382 NHTSIRHLFSKCLSQYDKLRKKQAFL 407
>gnl|CDD|218528 pfam05272, VirE, Virulence-associated protein E. This family
contains several bacterial virulence-associated protein
E like proteins. These proteins contain a P-loop motif.
Length = 198
Score = 25.8 bits (57), Expect = 7.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 77 SKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
++ +++F APY +Q + VG TN DEF
Sbjct: 120 TRTVDSFRAPYGRRAESFPRQC--VFVGTTNRDEF 152
>gnl|CDD|225358 COG2768, COG2768, Uncharacterized Fe-S center protein [General
function prediction only].
Length = 354
Score = 25.9 bits (57), Expect = 8.3
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 37 KNEALCKATEIVKDEKTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLK 96
L K + + + + VA+K +F RG + + +V+K+K
Sbjct: 18 LLSKLEKLFDEAGCVELVSKDDFVAVKVHFGERGNDDFISPVFVR--------AIVDKVK 69
Query: 97 QSGA 100
++G
Sbjct: 70 EAGG 73
>gnl|CDD|235055 PRK02625, rpoC1, DNA-directed RNA polymerase subunit gamma;
Provisional.
Length = 627
Score = 25.9 bits (57), Expect = 9.2
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 26/65 (40%)
Query: 2 RHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEI-VKDEKTMLQGVTV 60
R IN+NN L+R++E+ A EI V++EK MLQ
Sbjct: 278 RRVINRNNR---------LARLQEIL----------------APEIIVRNEKRMLQEAVD 312
Query: 61 AIKDN 65
A+ DN
Sbjct: 313 ALIDN 317
>gnl|CDD|226953 COG4587, COG4587, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 268
Score = 25.4 bits (56), Expect = 9.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 100 AIIVGKTNMDEFAMGLVVRILWLG 123
++VGK + + L+V+I WL
Sbjct: 223 MLLVGKYSGAQILKALLVQIGWLL 246
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.379
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,527,950
Number of extensions: 557752
Number of successful extensions: 598
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 49
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)