RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10129
(135 letters)
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 183 bits (468), Expect = 2e-57
Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 4/116 (3%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTM-LQGV 58
+R + + +S +EV E R + K+ A+IT +AL +A + E+ + L G+
Sbjct: 10 LRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESL--KERELPLFGI 67
Query: 59 TVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
+A+KDN G TTCASK+LENF+APYDATV+E+LK++GA+IVGKTN+DEFAMG
Sbjct: 68 PIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMG 123
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 182 bits (465), Expect = 6e-57
Identities = 49/115 (42%), Positives = 74/115 (64%), Gaps = 4/115 (3%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
IR + + +S EV + L R++E+ L AF+++ + L +A + D L G+
Sbjct: 6 IRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNE-RLLEEAEAV--DPGLPLAGLV 62
Query: 60 VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
VA+KDN TRG+ TT S++LENF+ PY+AT V +LK GA+++GKTN+DEF MG
Sbjct: 63 VAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMG 117
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 181 bits (463), Expect = 2e-56
Identities = 49/122 (40%), Positives = 69/122 (56%), Gaps = 10/122 (8%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEK------- 52
+ I I +V + IEE + +F+ + K A+ KA E+ DE
Sbjct: 11 LLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQEL--DELQAKDQMD 68
Query: 53 TMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
L G+ + IKDN T G+ TTCASKMLE F+ Y++TV+EKL + A+++GK NMDEFA
Sbjct: 69 GKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFA 128
Query: 113 MG 114
MG
Sbjct: 129 MG 130
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 179 bits (456), Expect = 1e-55
Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 9/115 (7%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
I + + ++ + L I+ + + AFI+V +N ++ K + G+
Sbjct: 12 IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKGK--------FWGIP 63
Query: 60 VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
VAIKDN T G+ TTCAS++LEN+ + +DATVV+K+K++G ++VGK N+DEFAMG
Sbjct: 64 VAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMG 118
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 176 bits (449), Expect = 6e-55
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKDEKTM------ 54
+ + + + E+ L R + NA + + A +A + E+
Sbjct: 6 AKRLLETGRTTPLALLEEALERAKAFQDRNALAYLDEEAARKEALAL--TEELRRGQVRG 63
Query: 55 -LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
L G+ + +KD F +G+PT +K + P +A V +L+++GA++ KTNM E A+
Sbjct: 64 PLHGLPLTVKDLFPVKGMPTRAGTKAPLPPL-PEEARAVRRLREAGALLFAKTNMHEIAL 122
Query: 114 G 114
G
Sbjct: 123 G 123
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 169 bits (431), Expect = 2e-52
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
++ I +S + + IE +++AF+ K+ L+G+
Sbjct: 7 LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARA--------QASGPLRGIA 58
Query: 60 VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
V IKD T +PT S++ + DA VV LK++GA I+GKT FA
Sbjct: 59 VGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR 113
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 164 bits (418), Expect = 7e-50
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV----SKLNAFITVTKNEALCKATEI-----VKDE 51
++ + + +T+ L RI + +L A I + +AL +A E
Sbjct: 16 LQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAAERDRERRDGRL 74
Query: 52 KTMLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
+ L G+ + +KDN + T+ S L+ F P DA +V +L+ +GA+++GKTN+ E+
Sbjct: 75 RGPLHGIPLLLKDNINAAPMATSAGSLALQGFR-PDDAYLVRRLRDAGAVVLGKTNLSEW 133
Query: 112 AMG 114
A
Sbjct: 134 ANF 136
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 157 bits (398), Expect = 8e-47
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 12/117 (10%)
Query: 10 ISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKA-----------TEIVKDEKTMLQG 57
++ + ++++ + T ++ A+ A T I +L G
Sbjct: 31 PALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPLSAWYVTTSIPPTSDGVLTG 90
Query: 58 VTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
VAIKDN G+P S+ +E F DATVV +L +GA + GK ++
Sbjct: 91 RRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFS 147
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 132 bits (334), Expect = 1e-37
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 ISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVTVAIKDNF-C 67
IS E+ E ++ ++ V ++NA I +A ++ + GV +KD
Sbjct: 22 ISRTELLEATIAHVQAVNPEINAVIIPLFEKARRES----ELASGPFAGVPYLLKDLTVV 77
Query: 68 TRGIPTTCASKMLEN--FIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
++G T + K ++ + A +DA V++++ +G +++GKTN E
Sbjct: 78 SQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQ 126
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 112 bits (281), Expect = 5e-30
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
+ + +S V L + EV N + + + + +L GV
Sbjct: 76 LVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQA---PRQGLLYGVP 132
Query: 60 VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMGL 115
V++K+ F +G +T + E + D VV+ LK GA+ TN+ +
Sbjct: 133 VSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSY 188
>4fd5_A Arylalkylamine N-acetyltransferase 2; GNAT; 1.64A {Aedes aegypti}
PDB: 4fd6_A
Length = 222
Score = 27.0 bits (59), Expect = 1.6
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 6 NKNNISIREVTEKCLSRIEEVSKL--NAFITVTKNEALCKATEIVKDE 51
NNI ++ ++V + F +E L KA + +
Sbjct: 5 KLNNIRFETISS---KYYDDVIEHLRQTFF---ADEPLNKAVNLTRPG 46
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes
aegypti}
Length = 217
Score = 26.3 bits (57), Expect = 3.1
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 5 INKNNISIREVTEKCLSRIEEVSKL--NAFITVTKNEALCKATEIVKDE 51
+ +I +R +E+V ++ + E + + K
Sbjct: 2 VAPESIVLRVARL---DELEQVREILHRIYY---PEEGITISYVHGKSH 44
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 26.2 bits (58), Expect = 4.1
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 73 TTCASKMLENFIAPYDATVVEKLKQSGA-IIVGKTNMD 109
TT A + + + G VGK MD
Sbjct: 158 TTTACYFATIHTDSSLL-LADITDKFGQRAFVGKVCMD 194
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 25.8 bits (57), Expect = 5.2
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 73 TTCASKMLENFIAPYDATVVEKLKQSGA-IIVGKTNMD 109
TT + + + E+ + +I G T +D
Sbjct: 132 TTTCQAFTSSSPVATEE-LFEEASRRNMRVIAGLTGID 168
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn
protein, structural proteomics in europe, spine,
structur genomics; 1.75A {Mycobacterium tuberculosis}
PDB: 2a5v_A
Length = 215
Score = 25.1 bits (55), Expect = 8.4
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 1 IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKD 50
+R + + S+ LSR++E + + TV L + + +
Sbjct: 135 VRDVVERVAPSVLLGRRDGLSRVDEFEQRHVHETV---AILMARSSAISE 181
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.379
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,940,257
Number of extensions: 105343
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 17
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)