RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10129
         (135 letters)



>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
           hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 537

 Score =  110 bits (276), Expect = 4e-30
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           +   +    +S   V    L +  EV    N   +   +     +       + +L GV 
Sbjct: 46  LVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQ---APRQGLLYGVP 102

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAM 113
           V++K+ F  +G  +T    + E   +  D  VV+ LK  GA+    TN+ +  +
Sbjct: 103 VSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSML 156


>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
           subunit A {Thermotoga maritima [TaxId: 2336]}
          Length = 475

 Score =  109 bits (274), Expect = 6e-30
 Identities = 44/115 (38%), Positives = 72/115 (62%), Gaps = 9/115 (7%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           I   +  +     ++ +  L  I+ +   + AFI+V +N ++        ++K    G+ 
Sbjct: 11  IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV--------EKKGKFWGIP 62

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           VAIKDN  T G+ TTCAS++LEN+ + +DATVV+K+K++G ++VGK N+DEFAMG
Sbjct: 63  VAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMG 117


>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
           subunit A {Staphylococcus aureus [TaxId: 1280]}
          Length = 485

 Score = 91.0 bits (225), Expect = 4e-23
 Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 10/121 (8%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTM----- 54
           +   I    I   +V +     IEE    + +F+ + K  A+ KA E+  DE        
Sbjct: 11  LLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQEL--DELQAKDQMD 68

Query: 55  --LQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFA 112
             L G+ + IKDN  T G+ TTCASKMLE F+  Y++TV+EKL +  A+++GK NMDEFA
Sbjct: 69  GKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFA 128

Query: 113 M 113
           M
Sbjct: 129 M 129


>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
           [TaxId: 375]}
          Length = 412

 Score = 89.8 bits (221), Expect = 1e-22
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV-SKLNAFITVTKNEALCKATEIVKDEKTMLQGVT 59
           ++  I    +S      +  + IE    +++AF+   K+                L+G+ 
Sbjct: 7   LQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR--------AQASGPLRGIA 58

Query: 60  VAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEFAMG 114
           V IKD   T  +PT   S++   +    DA VV  LK++GA I+GKT    FA  
Sbjct: 59  VGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR 113


>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
           maltophilia [TaxId: 40324]}
          Length = 490

 Score = 89.0 bits (219), Expect = 3e-22
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 11/122 (9%)

Query: 1   IRHAINKNNISIREVTEKCLSRIEEV----SKLNAFITVTKNEALCKATEIVKDEKT--- 53
           ++  +    +    +T+  L RI  +     +L A I +   +AL +A E  ++ +    
Sbjct: 12  LQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAAERDRERRDGRL 70

Query: 54  --MLQGVTVAIKDNFCTRGIPTTCASKMLENFIAPYDATVVEKLKQSGAIIVGKTNMDEF 111
              L G+ + +KDN     + T+  S  L     P DA +V +L+ +GA+++GKTN+ E+
Sbjct: 71  RGPLHGIPLLLKDNINAAPMATSAGSLAL-QGFRPDDAYLVRRLRDAGAVVLGKTNLSEW 129

Query: 112 AM 113
           A 
Sbjct: 130 AN 131


>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein
          1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 69

 Score = 23.5 bits (51), Expect = 3.6
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 1  IRHAINKNNISIREVTEKCLSRIEEVSKLNAFITVTKNEALCKATEIVKD 50
          +   I KN      +T K    I   +    + T     +     E ++ 
Sbjct: 12 VPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRK 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,570
Number of extensions: 19345
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 7
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)