BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1013
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YMK|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain In The Apo Form
pdb|1YS0|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Disulfide
Form
Length = 175
Score = 177 bits (448), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 118/166 (71%), Gaps = 5/166 (3%)
Query: 9 LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
+ LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1 MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69 GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
GHI+ A+N+ ++S + + + DKR +LIFHCE+S+ERGP + R++R D
Sbjct: 60 GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
RA N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162
>pdb|1QB0|A Chain A, Human Cdc25b Catalytic Domain
pdb|1CWS|A Chain A, Human Cdc25b Catalytic Domain With Tungstate
pdb|1CWR|A Chain A, Human Cdc25b Catalytic Domain Without Ion In Catalytic
Site
Length = 211
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 5/165 (3%)
Query: 10 NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+GG
Sbjct: 22 ELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGG 80
Query: 70 HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
HI+ A+N+ ++S + + + DKR +LIFHCE+S+ERGP + R++R DR
Sbjct: 81 HIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERDR 137
Query: 130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
A N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K
Sbjct: 138 AVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 182
>pdb|1CWT|A Chain A, Human Cdc25b Catalytic Domain With Methyl Mercury
Length = 178
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 5/165 (3%)
Query: 10 NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+GG
Sbjct: 4 ELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGG 62
Query: 70 HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
HI+ A+N+ ++S + + + DKR +LIFHCE+S+ERGP + R++R DR
Sbjct: 63 HIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERDR 119
Query: 130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
A N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K
Sbjct: 120 AVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 164
>pdb|3OP3|A Chain A, Crystal Structure Of Cell Division Cycle 25c Protein
Isoform A From Homo Sapiens
Length = 216
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 120/175 (68%), Gaps = 5/175 (2%)
Query: 10 NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
+LIGDFSK LP V GKH DLK ++P+T+A L+ G+F +++K+ +IDCRYPYEY GG
Sbjct: 35 HLIGDFSKVCALPTV-SGKHQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGG 93
Query: 70 HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
HIQGALN+Y++E L F++ + KR +++FHCE+S+ERGP + R LR EDR
Sbjct: 94 HIQGALNLYSQEELFNFFLKKPIVPLDT---QKRIIIVFHCEFSSERGPRMCRCLREEDR 150
Query: 130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYLRSEDRA 183
+ N YP L YPE+Y+L GGY+ F+ ++ +LCE Y PM +K+ LR ++
Sbjct: 151 SLNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKTELLRCRSQS 205
>pdb|2IFD|A Chain A, Crystal Structure Of A Remote Binding Site Mutant, R492l,
Of Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 5/166 (3%)
Query: 9 LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
+ LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1 MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69 GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
GHI+ A+N+ ++S + + + DKR +LIFHCE+S+ERGP + R++R D
Sbjct: 60 GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
A N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K
Sbjct: 117 LAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162
>pdb|2A2K|A Chain A, Crystal Structure Of An Active Site Mutant, C473s, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 173 bits (438), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 5/166 (3%)
Query: 9 LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
+ LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1 MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69 GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
GHI+ A+N+ ++S + + + DKR +LIFH E+S+ERGP + R++R D
Sbjct: 60 GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHSEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
RA N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162
>pdb|1YM9|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfinic
Form
pdb|1YMD|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfonic
Form
pdb|1YML|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfenic
Form
Length = 175
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 5/166 (3%)
Query: 9 LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
+ LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1 MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69 GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
GHI+ A+N+ ++S + + + DKR +LIFH E+S+ERGP + R++R D
Sbjct: 60 GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHXEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
RA N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162
>pdb|2IFV|A Chain A, Crystal Structure Of An Active Site Mutant, C473d, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 117/166 (70%), Gaps = 5/166 (3%)
Query: 9 LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
+ LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1 MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69 GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
GHI+ A+N+ ++S + + + DKR +LIFH E+S+ERGP + R++R D
Sbjct: 60 GHIKTAVNLPLERDAESFLLKSPI---APCSLDKRVILIFHDEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
RA N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 162
>pdb|2UZQ|A Chain A, Protein Phosphatase, New Crystal Form
pdb|2UZQ|B Chain B, Protein Phosphatase, New Crystal Form
pdb|2UZQ|C Chain C, Protein Phosphatase, New Crystal Form
pdb|2UZQ|D Chain D, Protein Phosphatase, New Crystal Form
pdb|2UZQ|E Chain E, Protein Phosphatase, New Crystal Form
pdb|2UZQ|F Chain F, Protein Phosphatase, New Crystal Form
Length = 203
Score = 170 bits (430), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 114/161 (70%), Gaps = 5/161 (3%)
Query: 14 DFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQG 73
D+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+GGHI+
Sbjct: 18 DYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKT 76
Query: 74 ALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNA 133
A+N+ ++S + + + DKR +LIFHCE+S+ERGP + R++R DRA N
Sbjct: 77 AVNLPLERDAESFLLKSPI---APCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVND 133
Query: 134 YPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K
Sbjct: 134 YPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFK 174
>pdb|1C25|A Chain A, Human Cdc25a Catalytic Domain
Length = 161
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 114/165 (69%), Gaps = 6/165 (3%)
Query: 11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
LIGDFSK ++ V GKH DLK ISP+ +A ++ G+F +++ +++IIDCRYPYEY+GGH
Sbjct: 2 LIGDFSKGYLFHTVA-GKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGH 60
Query: 71 IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
I+GA+N++ E V++F+ K ++ KR +++FHCE+S+ERGP + RY+R DR
Sbjct: 61 IKGAVNLHMEEE-VEDFLLKKPIVPTDG---KRVIVVFHCEFSSERGPRMCRYVRERDRL 116
Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKS 174
N YP L YPE+Y+L GGYK+F+ + Q CE Y PM +K
Sbjct: 117 GNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFKE 161
>pdb|3F4A|A Chain A, Structure Of Ygr203w, A Yeast Protein Tyrosine Phosphatase
Of The Rhodanese Family
pdb|3F4A|B Chain B, Structure Of Ygr203w, A Yeast Protein Tyrosine Phosphatase
Of The Rhodanese Family
Length = 169
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 31 DLKNISPDTLARLIR-GEFNDVVDKYLIIDCRYPYEYKGGHIQGALN-IYTREHLVKEFI 88
++K + P L R + G + + + ++D R +Y GGHI+ + Y+R E++
Sbjct: 29 NVKYLDPTELHRWXQEGHTTTLREPFQVVDVR-GSDYXGGHIKDGWHYAYSRLKQDPEYL 87
Query: 89 ESKVHAQSNATCDKRRVL--IFHCEYSAERGPTLSR-YLRSEDRAHNAYPTLDYPEMYLL 145
H D R L IFHC S +RGP+ + LRS D A L +++L
Sbjct: 88 RELKHRLLEKQADGRGALNVIFHCXLSQQRGPSAAXLLLRSLDTAE-----LSRCRLWVL 142
Query: 146 NGGYKQFYAQHQD--LCEGGYLP 166
GG+ ++ + + D GYLP
Sbjct: 143 RGGFSRWQSVYGDDESVTAGYLP 165
>pdb|3FS5|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ygr203w, A
Homolog Of Single-Domain Rhodanese And Cdc25 Phosphatase
Catalytic Domain
Length = 152
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 31 DLKNISPDTLARLIR-GEFNDVVDKYLIIDCRYPYEYKGGHIQGALN-IYTREHLVKEFI 88
++K + P L R ++ G + + + ++D R +Y GGHI+ + Y+R E++
Sbjct: 8 NVKYLDPTELHRWMQEGHTTTLREPFQVVDVR-GSDYMGGHIKDGWHYAYSRLKQDPEYL 66
Query: 89 ESKVHAQSNATCDKRRVL--IFHCEYSAERGPTLSR-YLRSEDRAHNAYPTLDYPEMYLL 145
H D R L IFH S +RGP+ + LRS D A L +++L
Sbjct: 67 RELKHRLLEKQADGRGALNVIFHXMLSQQRGPSAAMLLLRSLDTAE-----LSRCRLWVL 121
Query: 146 NGGYKQFYAQHQD--LCEGGYLP 166
GG+ ++ + + D GYLP
Sbjct: 122 RGGFSRWQSVYGDDESVTAGYLP 144
>pdb|2J6P|A Chain A, Structure Of As-Sb Reductase From Leishmania Major
pdb|2J6P|B Chain B, Structure Of As-Sb Reductase From Leishmania Major
pdb|2J6P|C Chain C, Structure Of As-Sb Reductase From Leishmania Major
pdb|2J6P|D Chain D, Structure Of As-Sb Reductase From Leishmania Major
pdb|2J6P|E Chain E, Structure Of As-Sb Reductase From Leishmania Major
pdb|2J6P|F Chain F, Structure Of As-Sb Reductase From Leishmania Major
Length = 152
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 29/134 (21%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTR-------EHLVKEF 87
I P+ L L+ D + K +IDCR + G I ++N+ T E L K
Sbjct: 7 IKPEELVELLDNP--DSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKLAKTL 63
Query: 88 IESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDY--PEMYLL 145
E +K+ + +FHC S R P + +R A L Y P +Y+L
Sbjct: 64 FE-----------EKKELAVFHCAQSLVRAP------KGANRFALAQKKLGYVLPAVYVL 106
Query: 146 NGGYKQFYAQHQDL 159
GG++ FY + D+
Sbjct: 107 RGGWEAFYHMYGDV 120
>pdb|3TG1|B Chain B, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 158
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 56 LIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES-KVHAQSNATCDK-----RRVLIFH 109
+IIDCR EY HIQGA++I + + + ++ K+ +C + +R+
Sbjct: 36 VIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKE 95
Query: 110 CEYSAERGPTLSRYLRSEDRAHNAYPTL--DYPEMYLLNGGYKQFYAQHQDLCEGG 163
E SR + S+ H +L + E +L GG F H++LC+
Sbjct: 96 IIVYDENTNEPSRVMPSQP-LHIVLESLKREGKEPLVLKGGLSSFKQNHENLCDNS 150
>pdb|2OUC|A Chain A, Crystal Structure Of The Map Kinase Binding Domain Of Mkp5
pdb|2OUC|B Chain B, Crystal Structure Of The Map Kinase Binding Domain Of Mkp5
Length = 142
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 56 LIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES-KVHAQSNATCDK-----RRVLIFH 109
+IIDCR EY HIQGA++I + + + ++ K+ +C + +R+
Sbjct: 26 VIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKE 85
Query: 110 CEYSAERGPTLSRYLRSEDRAHNAYPTL--DYPEMYLLNGGYKQFYAQHQDLCEGG 163
E SR + S+ H +L + E +L GG F H++LC+
Sbjct: 86 IIVYDENTNEPSRVMPSQP-LHIVLESLKREGKEPLVLKGGLSSFKQNHENLCDNS 140
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 58 IDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERG 117
ID R P +Y+ H+QGA+NI +E VKE I + A DK + +C + G
Sbjct: 5 IDVRVPEQYQQEHVQGAINIPLKE--VKERI-------ATAVPDKNDTVKVYCNAGRQSG 55
>pdb|2VSW|A Chain A, The Structure Of The Rhodanese Domain Of The Human Dual
Specificity Phosphatase 16
pdb|2VSW|B Chain B, The Structure Of The Rhodanese Domain Of The Human Dual
Specificity Phosphatase 16
Length = 153
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 27/126 (21%)
Query: 53 DKYLIIDCRYPYEYKGGHIQGALNIYTR----------EHLVKEFIESKVHAQSNATCDK 102
+K L+ID R EY HI A+NI + L+ E I+ + + C +
Sbjct: 20 EKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQ 79
Query: 103 RRVLIFHCEYSAERGPTLSR------YLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH 156
+ V+ + S++ +LS L +++ N+ ++LL GG+ +F
Sbjct: 80 KVVVY---DQSSQDVASLSSDCFLTVLLGKLEKSFNS--------VHLLAGGFAEFSRCF 128
Query: 157 QDLCEG 162
LCEG
Sbjct: 129 PGLCEG 134
>pdb|3TG3|A Chain A, Crystal Structure Of The Mapk Binding Domain Of Mkp7
pdb|3TG3|B Chain B, Crystal Structure Of The Mapk Binding Domain Of Mkp7
pdb|3TG3|C Chain C, Crystal Structure Of The Mapk Binding Domain Of Mkp7
pdb|3TG3|D Chain D, Crystal Structure Of The Mapk Binding Domain Of Mkp7
Length = 142
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 53 DKYLIIDCRYPYEYKGGHIQGALNIYTR----------EHLVKEFIESKVHAQSNATCDK 102
+K L+ID R EY HI A+NI + L+ E I+ + + C +
Sbjct: 20 EKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQ 79
Query: 103 RRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTL-------DYPEMYLLNGGYKQFYAQ 155
+ V+ + S++ +LS + + T+ + ++LL GG+ +F
Sbjct: 80 KVVVY---DQSSQDVASLSS---------DCFLTVLLGKLEKSFNSVHLLAGGFAEFSRC 127
Query: 156 HQDLCEG 162
LCEG
Sbjct: 128 FPGLCEG 134
>pdb|1T3K|A Chain A, Nmr Structure Of A Cdc25-Like Dual-Specificity Tyrosine
Phosphatase Of Arabidopsis Thaliana
Length = 152
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 25/151 (16%)
Query: 23 LVPDGKHHDL-KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTRE 81
LVP G H + ++IS T +L+ + IID R GHI G+L
Sbjct: 14 LVPRGSHMAMARSISYITSTQLLPLHRRPNI---AIIDVRDEERNYDGHIAGSL------ 64
Query: 82 HLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYL------RSEDRAHNAYP 135
H + K+ DK L+FH S RGPT +R L + ED
Sbjct: 65 HYASGSFDDKISHLVQNVKDKD-TLVFHSALSQVRGPTCARRLVNYLDEKKEDTG----- 118
Query: 136 TLDYPEMYLLNGGYKQFYAQHQDLCEGGYLP 166
+ +L G+ + A + +C +P
Sbjct: 119 ---IKNIMILERGFNGWEASGKPVCRCAEVP 146
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 25 PDGKHHDLKNISPDTLARLIRG--------EFNDVVDKYLIIDCRYPYEYKGGHIQGALN 76
P G D+ N + + +I+G + +++ + L++D R P E + G ++GA+N
Sbjct: 449 PYGSAKDVINQAAFVASNIIKGDATPIHFDQIDNLSEDQLLLDVRNPGELQNGGLEGAVN 508
Query: 77 IYTRE 81
I E
Sbjct: 509 IPVDE 513
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 25 PDGKHHDLKNISPDTLARLIRG--------EFNDVVDKYLIIDCRYPYEYKGGHIQGALN 76
P G D+ N + + +I+G + +++ + L++D R P E + G ++GA+N
Sbjct: 449 PYGSAKDVINQAAFVASNIIKGDATPIHFDQIDNLSEDQLLLDVRNPGELQNGGLEGAVN 508
Query: 77 IYTRE 81
I E
Sbjct: 509 IPVDE 513
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 25 PDGKHHDLKNISPDTLARLIRG--------EFNDVVDKYLIIDCRYPYEYKGGHIQGALN 76
P G D+ N + + +I+G + +++ + L++D R P E + G ++GA+N
Sbjct: 449 PYGSAKDVINQAAFVASNIIKGDATPIHFDQIDNLSEDQLLLDVRNPGELQNGGLEGAVN 508
Query: 77 IYTRE 81
I E
Sbjct: 509 IPVDE 513
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 206 YAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANKSLSK 251
++ QDL EG + A +++ + + + S DY AN+SLSK
Sbjct: 309 FSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDYAANRSLSK 354
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 206 YAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANKSLSK 251
++ QDL EG + A +++ + + + S DY AN+SLSK
Sbjct: 309 FSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDYAANRSLSK 354
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 206 YAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANKSLSK 251
++ QDL EG + A +++ + + + S DY AN+SLSK
Sbjct: 309 FSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDYAANRSLSK 354
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 206 YAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANKSLSK 251
++ QDL EG + A +++ + + + S DY AN+SLSK
Sbjct: 309 FSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDYAANRSLSK 354
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 206 YAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANKSLSK 251
++ QDL EG + A +++ + + + S DY AN+SLSK
Sbjct: 345 FSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDYAANRSLSK 390
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 206 YAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCDYKANKSLSK 251
++ QDL EG + A +++ + + + S DY AN+SLSK
Sbjct: 345 FSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDYAANRSLSK 390
>pdb|2E52|A Chain A, Crystal Structural Analysis Of Hindiii Restriction
Endonuclease In Complex With Cognate Dna At 2.0 Angstrom
Resolution
pdb|2E52|C Chain C, Crystal Structural Analysis Of Hindiii Restriction
Endonuclease In Complex With Cognate Dna At 2.0 Angstrom
Resolution
pdb|2E52|B Chain B, Crystal Structural Analysis Of Hindiii Restriction
Endonuclease In Complex With Cognate Dna At 2.0 Angstrom
Resolution
pdb|2E52|D Chain D, Crystal Structural Analysis Of Hindiii Restriction
Endonuclease In Complex With Cognate Dna At 2.0 Angstrom
Resolution
Length = 300
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 4 LADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYP 63
++D + N + DF+K F+ DL I DTL +L++ E N + ++ LI
Sbjct: 205 VSDAENNFMRDFNKYFM----------DLFKIDKDTLNQLLQKEINFIEERSLI-----E 249
Query: 64 YEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCD 101
EY I N +TRE ++ ++ + T D
Sbjct: 250 KEYWKKQINIIKN-FTREEAIEALLKDINMSSKIETID 286
>pdb|3A4K|A Chain A, Crystal Structural Analysis Of Hindiii Restriction
Endonuclease In Complex With Cognate Dna And Divalent
Cations At 2.17 Angstrom Resolution
pdb|3A4K|C Chain C, Crystal Structural Analysis Of Hindiii Restriction
Endonuclease In Complex With Cognate Dna And Divalent
Cations At 2.17 Angstrom Resolution
pdb|3A4K|B Chain B, Crystal Structural Analysis Of Hindiii Restriction
Endonuclease In Complex With Cognate Dna And Divalent
Cations At 2.17 Angstrom Resolution
pdb|3A4K|D Chain D, Crystal Structural Analysis Of Hindiii Restriction
Endonuclease In Complex With Cognate Dna And Divalent
Cations At 2.17 Angstrom Resolution
Length = 301
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 4 LADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYP 63
++D + N + DF+K F+ DL I DTL +L++ E N + ++ LI
Sbjct: 206 VSDAENNFMRDFNKYFM----------DLFKIDKDTLNQLLQKEINFIEERSLI-----E 250
Query: 64 YEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCD 101
EY I N +TRE ++ ++ + T D
Sbjct: 251 KEYWKKQINIIKN-FTREEAIEALLKDINMSSKIETID 287
>pdb|4DQ2|A Chain A, Structure Of Staphylococcus Aureus Biotin Protein Ligase
In Complex With Biotinol-5'-Amp
Length = 328
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEM--------------YLLNGGYKQFY 153
H + +R L R L+ ++ +N + TL + E+ L KQF
Sbjct: 232 LHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYIAASNIWNRTLLFTENDKQFK 291
Query: 154 AQHQDLCEGGYLPMADPGYKSRYLRSED 181
Q DL GYL + D +S L S D
Sbjct: 292 GQAIDLDYDGYLIVRDEAGESHRLISAD 319
>pdb|3RIR|A Chain A, Crystal Strucrture Of Biotin Protein Ligase From S. Aureus
pdb|3RKW|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKX|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKY|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
Length = 323
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEM--------------YLLNGGYKQFY 153
H + +R L R L+ ++ +N + TL + E+ L KQF
Sbjct: 233 LHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTENDKQFK 292
Query: 154 AQHQDLCEGGYLPMADPGYKSRYLRSED 181
Q DL GYL + D +S L S D
Sbjct: 293 GQAIDLDYDGYLIVRDEAGESHRLISAD 320
>pdb|3V7R|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor
pdb|3V8J|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase
pdb|3V8K|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotin
pdb|3V8L|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotinyl-5'-Amp
Length = 329
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEM--------------YLLNGGYKQFY 153
H + +R L R L+ ++ +N + TL + E+ L KQF
Sbjct: 239 LHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYIAASNIWNRTLLFTENDKQFK 298
Query: 154 AQHQDLCEGGYLPMADPGYKSRYLRSED 181
Q DL GYL + D +S L S D
Sbjct: 299 GQAIDLDYDGYLIVRDEAGESHRLISAD 326
>pdb|3V7C|A Chain A, Cystal Structure Of Sabpl In Complex With Inhibitor
pdb|3V7S|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor 0364
Length = 329
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEM--------------YLLNGGYKQFY 153
H + +R L R L+ ++ +N + TL + E+ L KQF
Sbjct: 233 LHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYIAASNIWNRTLLFTENDKQFK 292
Query: 154 AQHQDLCEGGYLPMADPGYKSRYLRSED 181
Q DL GYL + D +S L S D
Sbjct: 293 GQAIDLDYDGYLIVRDEAGESHRLISAD 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,961,136
Number of Sequences: 62578
Number of extensions: 404656
Number of successful extensions: 759
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 49
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)