Query psy1013
Match_columns 258
No_of_seqs 298 out of 2050
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 18:37:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3772|consensus 100.0 4.1E-40 8.8E-45 293.4 12.0 170 16-242 140-311 (325)
2 COG5105 MIH1 Mitotic inducer, 100.0 7.1E-30 1.5E-34 225.1 11.6 166 22-246 231-401 (427)
3 cd01530 Cdc25 Cdc25 phosphatas 99.9 2.2E-22 4.9E-27 158.8 11.9 117 32-153 1-120 (121)
4 cd01533 4RHOD_Repeat_2 Member 99.8 7E-21 1.5E-25 147.0 11.1 103 28-155 5-108 (109)
5 cd01518 RHOD_YceA Member of th 99.8 6.2E-21 1.3E-25 145.3 9.3 99 33-153 2-100 (101)
6 cd01534 4RHOD_Repeat_3 Member 99.8 4.8E-20 1.1E-24 138.9 9.5 94 35-153 1-94 (95)
7 cd01523 RHOD_Lact_B Member of 99.8 9.9E-20 2.1E-24 138.3 9.7 99 35-153 1-99 (100)
8 PRK00162 glpE thiosulfate sulf 99.8 3.2E-19 6.9E-24 137.5 10.9 100 30-157 2-101 (108)
9 cd01520 RHOD_YbbB Member of th 99.8 2.7E-19 5.8E-24 142.4 10.7 101 35-154 1-126 (128)
10 cd01525 RHOD_Kc Member of the 99.8 1.9E-19 4.2E-24 137.5 7.3 102 35-153 1-104 (105)
11 cd01526 RHOD_ThiF Member of th 99.8 7.5E-19 1.6E-23 138.5 10.6 106 31-155 6-114 (122)
12 PF00581 Rhodanese: Rhodanese- 99.8 7.5E-19 1.6E-23 134.7 9.9 101 36-155 1-113 (113)
13 cd01528 RHOD_2 Member of the R 99.8 9.6E-19 2.1E-23 133.1 10.0 97 35-154 2-98 (101)
14 cd01519 RHOD_HSP67B2 Member of 99.8 7.4E-19 1.6E-23 134.4 9.2 100 36-153 2-105 (106)
15 cd01531 Acr2p Eukaryotic arsen 99.8 9.7E-19 2.1E-23 135.9 9.8 112 32-155 1-112 (113)
16 cd01527 RHOD_YgaP Member of th 99.8 9.5E-19 2.1E-23 132.5 8.9 95 32-155 1-95 (99)
17 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 1.5E-18 3.3E-23 134.9 10.1 110 32-153 1-112 (113)
18 cd01524 RHOD_Pyr_redox Member 99.8 1.6E-18 3.5E-23 129.2 9.3 89 35-153 1-89 (90)
19 cd01444 GlpE_ST GlpE sulfurtra 99.8 1.8E-18 3.9E-23 129.8 9.6 93 34-153 1-95 (96)
20 cd01447 Polysulfide_ST Polysul 99.8 1.4E-18 3.1E-23 131.9 8.4 100 35-154 1-101 (103)
21 cd01522 RHOD_1 Member of the R 99.8 1.1E-18 2.4E-23 136.8 6.9 99 35-155 1-105 (117)
22 cd01449 TST_Repeat_2 Thiosulfa 99.7 3.1E-18 6.8E-23 133.5 7.6 98 35-153 1-117 (118)
23 cd01448 TST_Repeat_1 Thiosulfa 99.7 9.5E-18 2.1E-22 131.7 10.3 104 34-154 1-120 (122)
24 cd01446 DSP_MapKP N-terminal r 99.7 1.5E-17 3.2E-22 132.7 10.5 115 34-160 1-132 (132)
25 smart00450 RHOD Rhodanese Homo 99.7 7.7E-18 1.7E-22 125.4 8.0 92 53-156 3-98 (100)
26 cd01521 RHOD_PspE2 Member of t 99.7 2.1E-17 4.5E-22 127.9 10.5 98 33-155 8-106 (110)
27 cd01529 4RHOD_Repeats Member o 99.7 6.1E-18 1.3E-22 127.5 7.2 85 53-153 11-95 (96)
28 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 4.3E-17 9.4E-22 135.0 12.1 109 28-155 31-158 (162)
29 PLN02160 thiosulfate sulfurtra 99.7 1.6E-17 3.4E-22 133.8 8.6 105 28-156 10-123 (136)
30 PRK09629 bifunctional thiosulf 99.7 2.2E-17 4.7E-22 161.9 11.2 150 33-203 9-171 (610)
31 PRK01415 hypothetical protein; 99.7 3.5E-17 7.7E-22 143.5 11.1 105 31-157 110-214 (247)
32 cd01445 TST_Repeats Thiosulfat 99.7 1.5E-17 3.2E-22 134.2 7.8 104 35-153 1-137 (138)
33 cd01532 4RHOD_Repeat_1 Member 99.7 2.3E-17 5E-22 123.7 8.3 82 53-154 9-92 (92)
34 cd00158 RHOD Rhodanese Homolog 99.7 2.3E-17 4.9E-22 121.1 7.9 81 53-153 9-89 (89)
35 KOG1530|consensus 99.7 2.1E-17 4.6E-22 129.4 7.7 105 29-155 19-130 (136)
36 PRK11493 sseA 3-mercaptopyruva 99.7 3.8E-17 8.3E-22 146.5 10.3 154 33-206 5-180 (281)
37 PLN02723 3-mercaptopyruvate su 99.7 9.3E-17 2E-21 146.6 11.5 152 33-204 22-215 (320)
38 PRK00142 putative rhodanese-re 99.7 1.2E-16 2.5E-21 145.4 11.7 107 29-157 108-214 (314)
39 cd01535 4RHOD_Repeat_4 Member 99.7 1.8E-16 3.9E-21 129.0 9.5 94 40-160 2-95 (145)
40 PRK05320 rhodanese superfamily 99.7 4.4E-16 9.6E-21 137.9 11.9 110 31-156 108-217 (257)
41 COG2897 SseA Rhodanese-related 99.7 2.3E-16 5E-21 140.9 9.0 162 30-206 8-183 (285)
42 TIGR02981 phageshock_pspE phag 99.7 5.7E-16 1.2E-20 118.6 8.8 81 53-154 17-97 (101)
43 PRK08762 molybdopterin biosynt 99.6 7.9E-16 1.7E-20 143.4 10.5 97 32-155 2-98 (376)
44 PRK10287 thiosulfate:cyanide s 99.6 8E-16 1.7E-20 118.3 7.9 81 53-154 19-99 (104)
45 PRK07878 molybdopterin biosynt 99.6 2E-15 4.4E-20 141.3 10.5 99 31-155 285-384 (392)
46 PRK11784 tRNA 2-selenouridine 99.6 9.2E-15 2E-19 134.5 10.8 102 36-156 4-130 (345)
47 COG0607 PspE Rhodanese-related 99.6 7.8E-15 1.7E-19 112.3 8.4 83 53-155 19-102 (110)
48 PRK07411 hypothetical protein; 99.6 1.2E-14 2.5E-19 136.1 10.3 104 30-155 279-382 (390)
49 PLN02723 3-mercaptopyruvate su 99.6 6.7E-15 1.5E-19 134.4 8.5 101 34-155 191-310 (320)
50 TIGR03167 tRNA_sel_U_synt tRNA 99.5 1.2E-14 2.7E-19 131.8 8.6 91 54-156 2-116 (311)
51 PRK05597 molybdopterin biosynt 99.5 1.9E-14 4E-19 133.2 8.3 96 31-154 259-354 (355)
52 PRK09629 bifunctional thiosulf 99.5 4.6E-14 1E-18 138.6 9.5 102 33-155 147-264 (610)
53 COG2897 SseA Rhodanese-related 99.5 9.4E-14 2E-18 124.2 10.1 106 30-155 153-275 (285)
54 PRK11493 sseA 3-mercaptopyruva 99.5 6.1E-14 1.3E-18 125.7 7.2 100 35-154 155-271 (281)
55 PRK05600 thiamine biosynthesis 99.4 3E-13 6.5E-18 125.7 7.3 93 33-150 271-369 (370)
56 COG1054 Predicted sulfurtransf 99.3 1.2E-11 2.6E-16 109.7 7.8 102 32-155 112-213 (308)
57 KOG1529|consensus 99.1 3.9E-10 8.4E-15 99.7 10.0 155 33-205 5-184 (286)
58 PRK01269 tRNA s(4)U8 sulfurtra 99.0 1.2E-09 2.5E-14 105.2 7.6 72 53-146 406-481 (482)
59 KOG2017|consensus 98.8 1.4E-08 3.1E-13 91.9 6.8 104 32-155 316-419 (427)
60 COG5105 MIH1 Mitotic inducer, 98.4 6.4E-08 1.4E-12 86.7 1.5 22 158-182 309-330 (427)
61 KOG1529|consensus 98.4 1.1E-06 2.5E-11 77.9 7.6 114 33-159 150-280 (286)
62 KOG3772|consensus 98.4 8.5E-08 1.8E-12 86.5 0.4 78 158-246 227-308 (325)
63 KOG1717|consensus 98.0 2.7E-06 5.9E-11 74.7 2.5 114 34-161 5-130 (343)
64 COG2603 Predicted ATPase [Gene 96.8 0.0025 5.5E-08 57.0 5.6 90 53-154 14-128 (334)
65 KOG1093|consensus 95.4 0.0029 6.2E-08 61.3 -0.9 100 29-151 618-717 (725)
66 KOG3636|consensus 93.3 0.3 6.6E-06 46.4 7.2 29 54-83 326-354 (669)
67 cd01446 DSP_MapKP N-terminal r 90.6 0.17 3.6E-06 39.8 2.0 23 191-213 110-132 (132)
68 PF04273 DUF442: Putative phos 90.6 1.3 2.9E-05 34.1 7.0 26 34-65 14-39 (110)
69 TIGR01244 conserved hypothetic 88.2 0.97 2.1E-05 36.0 4.8 28 33-66 13-40 (135)
70 PRK00142 putative rhodanese-re 88.0 0.14 3E-06 46.9 -0.3 41 35-83 16-56 (314)
71 TIGR03167 tRNA_sel_U_synt tRNA 84.1 3.4 7.4E-05 37.8 6.7 37 32-74 135-175 (311)
72 cd01530 Cdc25 Cdc25 phosphatas 76.4 1.7 3.7E-05 33.8 1.8 22 186-207 100-121 (121)
73 PLN02727 NAD kinase 60.1 37 0.00081 35.6 7.8 107 9-130 236-369 (986)
74 PF07879 PHB_acc_N: PHB/PHA ac 56.4 14 0.0003 25.8 2.8 28 32-64 17-44 (64)
75 PF13350 Y_phosphatase3: Tyros 46.1 40 0.00087 27.2 4.7 34 29-68 24-57 (164)
76 PF09992 DUF2233: Predicted pe 45.7 35 0.00075 27.7 4.2 39 104-152 102-143 (170)
77 PRK07688 thiamine/molybdopteri 45.4 27 0.00059 32.2 3.9 47 31-78 275-322 (339)
78 PRK11784 tRNA 2-selenouridine 41.6 97 0.0021 28.7 6.9 36 35-77 152-187 (345)
79 COG0123 AcuC Deacetylases, inc 41.3 51 0.0011 30.6 5.0 46 101-152 238-296 (340)
80 PTZ00063 histone deacetylase; 40.7 42 0.0009 32.3 4.4 68 74-151 220-302 (436)
81 smart00195 DSPc Dual specifici 40.2 72 0.0016 24.6 5.1 18 103-120 78-95 (138)
82 TIGR01848 PHA_reg_PhaR polyhyd 37.5 38 0.00082 26.0 2.9 29 32-65 17-45 (107)
83 PTZ00346 histone deacetylase; 37.1 57 0.0012 31.3 4.7 41 101-151 267-320 (429)
84 cd00127 DSPc Dual specificity 29.9 77 0.0017 24.2 3.8 17 104-120 82-98 (139)
85 COG4822 CbiK Cobalamin biosynt 27.4 1.7E+02 0.0036 25.7 5.5 42 98-145 132-173 (265)
86 smart00226 LMWPc Low molecular 26.1 64 0.0014 25.2 2.7 37 106-152 1-37 (140)
87 KOG1342|consensus 20.9 1.7E+02 0.0038 27.7 4.7 40 74-115 222-265 (425)
88 PF00850 Hist_deacetyl: Histon 20.1 60 0.0013 29.4 1.6 12 140-151 285-296 (311)
No 1
>KOG3772|consensus
Probab=100.00 E-value=4.1e-40 Score=293.36 Aligned_cols=170 Identities=52% Similarity=1.054 Sum_probs=137.0
Q ss_pred ccccccccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhh
Q psy1013 16 SKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQ 95 (258)
Q Consensus 16 s~~~~lp~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~ 95 (258)
++.+.||++ +++++.+++||+++|+.+|++.+.+....++|||||+|+||.+|||+||+||+..+.+...+....
T Consensus 140 s~~y~Lptv-~~k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~---- 214 (325)
T KOG3772|consen 140 SKAYLLPTV-DGKSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKD---- 214 (325)
T ss_pred ccceecccc-CcccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhcccc----
Confidence 889999999 679999999999999999999888777779999999999999999999999999443333333211
Q ss_pred ccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc--cCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCc
Q psy1013 96 SNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYK 173 (258)
Q Consensus 96 ~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n--~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ 173 (258)
......+..++||||++|+.|||+||+.|++.||.+| +||.|.|+++|||+|||++|+..++++|+
T Consensus 215 ~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~~LCe------------ 282 (325)
T KOG3772|consen 215 GVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYPNLCE------------ 282 (325)
T ss_pred ccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcccccC------------
Confidence 1112246788999999999999999999998876554 55555555555555555555554444444
Q ss_pred ccccccccccccCCCCCCCCceeeechhhHHHHhhhccCCCCCcccCCCcccHHHHHHHHhhccccccc
Q psy1013 174 SRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFRSKSKTWSCD 242 (258)
Q Consensus 174 ak~~re~dr~~n~~p~l~ype~~~ld~g~~~~~~~~~~~c~~~y~~m~~~~~~~~~~~~~~~~~~~~~~ 242 (258)
|.+|+||.|++|..+++.|+.++++|++.
T Consensus 283 ----------------------------------------P~~Yv~M~h~~~~~~~k~~~~~~~~~~~~ 311 (325)
T KOG3772|consen 283 ----------------------------------------PQSYVPMHHEAFKDELKRFRTKSRSWSGE 311 (325)
T ss_pred ----------------------------------------ccceecccchhHHHHHhhhcccccccccc
Confidence 99999999999999999999999999999
No 2
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=99.96 E-value=7.1e-30 Score=225.13 Aligned_cols=166 Identities=40% Similarity=0.757 Sum_probs=130.0
Q ss_pred ccccCCCCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCC
Q psy1013 22 PLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCD 101 (258)
Q Consensus 22 p~~~~~~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~ 101 (258)
|+...++...++.||+++|.++|++.+.+...+++|||||-++||.+|||-.||||.....+...|... +..
T Consensus 231 ~~~~~~k~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~~~F~hk--------plT 302 (427)
T COG5105 231 PTLGPGKSDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLGLLFRHK--------PLT 302 (427)
T ss_pred ccCCCCcccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHHHHHHhc--------ccc
Confidence 444345667899999999999999988877778999999999999999999999999966665555531 224
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCccccccccc
Q psy1013 102 KRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSED 181 (258)
Q Consensus 102 ~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ak~~re~d 181 (258)
.+..+||||++|+.|+|.+|..||.+||..|.
T Consensus 303 hp~aLifHCEfSshRaP~LA~HlRN~DR~~N~------------------------------------------------ 334 (427)
T COG5105 303 HPRALIFHCEFSSHRAPRLAQHLRNMDRMKNP------------------------------------------------ 334 (427)
T ss_pred CceeEEEEeecccccchhHHHHHhhhhhhcCc------------------------------------------------
Confidence 57789999999999999999999999876551
Q ss_pred ccccCCCCCCCCceeeechhhHHHHhhhccCC-CCCcccCCCccc----HHHHHHHHhhccccccccccc
Q psy1013 182 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC-EGGYLPMADPGY----KSDFQTFRSKSKTWSCDYKAN 246 (258)
Q Consensus 182 r~~n~~p~l~ype~~~ld~g~~~~~~~~~~~c-~~~y~~m~~~~~----~~~~~~~~~~~~~~~~~~~~~ 246 (258)
+.||.|.|||||||+||||.||+.|+++| |.+||+|.+..+ .+++.+||..+|-++...+..
T Consensus 335 ---dhYP~L~yPevyIl~GGYk~fy~n~p~lCdP~~YV~Mn~ae~~~~c~~~mdkfrrn~kffaTKn~sF 401 (427)
T COG5105 335 ---DHYPLLTYPEVYILEGGYKKFYSNYPDLCDPKGYVTMNNAELDYRCLYKMDKFRRNKKFFATKNNSF 401 (427)
T ss_pred ---ccCcccccceEEEecCcHHHHhhcCccccCcccccccccHHHHHHHHHHHHHHhhhchhhhcccccc
Confidence 13555555666666666777777777777 999999999765 356678988877666555544
No 3
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.88 E-value=2.2e-22 Score=158.83 Aligned_cols=117 Identities=58% Similarity=1.127 Sum_probs=91.6
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCch-hhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTRE-HLVKEFIESKVHAQSNATCDKRRVLIFHC 110 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~-~l~~~~~~~~~~~~~~~~~~~~~~vV~yc 110 (258)
+..||++++.+++++..+...++++|||||++.||..||||||+|+|. . .+...+.. . ......++...|||||
T Consensus 1 ~~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~-~~~l~~~~~~-~---~~~~~~~~~~~vv~yC 75 (121)
T cd01530 1 LKRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLST-KDELEEFFLD-K---PGVASKKKRRVLIFHC 75 (121)
T ss_pred CCccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCc-HHHHHHHHHH-h---hcccccCCCCEEEEEC
Confidence 357999999999976311011468999999999999999999999999 4 34333221 1 0001124667799999
Q ss_pred CCCCCcHHHHHHHHHHhHHhcc--cCCCCCCCCeEEecchHHHHH
Q psy1013 111 EYSAERGPTLSRYLRSEDRAHN--AYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 111 ~~s~~rs~~~a~~L~~~~r~~n--~yp~lGy~~V~iL~GG~~~w~ 153 (258)
..++.||+.+|+.|+..+|..+ .||.+||++|++|+|||.+|+
T Consensus 76 ~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 76 EFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred CCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 8799999999999999988877 789999999999999999995
No 4
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.85 E-value=7e-21 Score=147.01 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=83.8
Q ss_pred CCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEE
Q psy1013 28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLI 107 (258)
Q Consensus 28 ~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV 107 (258)
....++.|+++++.++++.+ .+.+|||+|++.||..||||||+|+|+ .++... +. . ...++...||
T Consensus 5 ~~~~~~~i~~~~l~~~~~~~-----~~~~liDvR~~~e~~~ghIpgainip~-~~l~~~-~~-----~--l~~~~~~~iv 70 (109)
T cd01533 5 AVRHTPSVSADELAALQARG-----APLVVLDGRRFDEYRKMTIPGSVSCPG-AELVLR-VG-----E--LAPDPRTPIV 70 (109)
T ss_pred ccccCCcCCHHHHHHHHhcC-----CCcEEEeCCCHHHHhcCcCCCceeCCH-HHHHHH-HH-----h--cCCCCCCeEE
Confidence 34556789999999999864 468999999999999999999999999 655432 21 1 1223344588
Q ss_pred EecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCC-eEEecchHHHHHHh
Q psy1013 108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPE-MYLLNGGYKQFYAQ 155 (258)
Q Consensus 108 ~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~-V~iL~GG~~~w~~~ 155 (258)
+||. ++.||..+++.|+.. ||++ |++|+||+.+|...
T Consensus 71 v~C~-~G~rs~~a~~~L~~~----------G~~~~v~~l~gG~~~W~~~ 108 (109)
T cd01533 71 VNCA-GRTRSIIGAQSLINA----------GLPNPVAALRNGTQGWTLA 108 (109)
T ss_pred EECC-CCchHHHHHHHHHHC----------CCCcceeEecCCHHHHHhc
Confidence 9999 889999999999999 9988 99999999999863
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.84 E-value=6.2e-21 Score=145.25 Aligned_cols=99 Identities=23% Similarity=0.425 Sum_probs=79.0
Q ss_pred CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCC
Q psy1013 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEY 112 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~ 112 (258)
+.||++++.+++++ ++++|||||++.||..||||||+|+|. +.+... .. .+.... ..++...||+||.
T Consensus 2 ~~is~~~l~~~~~~------~~~~iiDvR~~~e~~~ghi~gA~~ip~-~~~~~~-~~-~~~~~~--~~~~~~~ivvyC~- 69 (101)
T cd01518 2 TYLSPAEWNELLED------PEVVLLDVRNDYEYDIGHFKGAVNPDV-DTFREF-PF-WLDENL--DLLKGKKVLMYCT- 69 (101)
T ss_pred CcCCHHHHHHHHcC------CCEEEEEcCChhhhhcCEeccccCCCc-ccHhHh-HH-HHHhhh--hhcCCCEEEEECC-
Confidence 36899999999975 679999999999999999999999999 554321 11 111001 1134455899999
Q ss_pred CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013 113 SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 113 s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~ 153 (258)
+|.|+..+++.|+.. ||.+|++|+||+.+|.
T Consensus 70 ~G~rs~~a~~~L~~~----------G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 70 GGIRCEKASAYLKER----------GFKNVYQLKGGILKYL 100 (101)
T ss_pred CchhHHHHHHHHHHh----------CCcceeeechhHHHHh
Confidence 899999999999998 9999999999999996
No 6
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.82 E-value=4.8e-20 Score=138.87 Aligned_cols=94 Identities=22% Similarity=0.317 Sum_probs=75.8
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCC
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSA 114 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~ 114 (258)
||+++|.+++..+ .++++|||+|++.||..||||||+|+|. ..+...... ....+...||+||. +|
T Consensus 1 is~~~l~~~~~~~----~~~~~liDvR~~~e~~~ghipga~~ip~-~~l~~~~~~--------~~~~~~~~iv~~c~-~G 66 (95)
T cd01534 1 IGAAELARWAAEG----DRTVYRFDVRTPEEYEAGHLPGFRHTPG-GQLVQETDH--------FAPVRGARIVLADD-DG 66 (95)
T ss_pred CCHHHHHHHHHcC----CCCeEEEECCCHHHHHhCCCCCcEeCCH-HHHHHHHHH--------hcccCCCeEEEECC-CC
Confidence 6899999999863 0268899999999999999999999999 655432111 11123345899999 89
Q ss_pred CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013 115 ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 115 ~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~ 153 (258)
.|+..++..|+.. ||+ |++|+||+.+|.
T Consensus 67 ~rs~~aa~~L~~~----------G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 67 VRADMTASWLAQM----------GWE-VYVLEGGLAAAL 94 (95)
T ss_pred ChHHHHHHHHHHc----------CCE-EEEecCcHHHhc
Confidence 9999999999888 998 999999999996
No 7
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.81 E-value=9.9e-20 Score=138.25 Aligned_cols=99 Identities=18% Similarity=0.289 Sum_probs=77.4
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCC
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSA 114 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~ 114 (258)
||+++|.++++++ ++.+|||||++.||+.||||||+|+|. ..+...++..........+ +...||+||. +|
T Consensus 1 is~~el~~~l~~~-----~~~~liDvR~~~e~~~ghi~ga~~ip~-~~~~~~~~~~~~~~~~~~~--~~~~ivv~C~-~G 71 (100)
T cd01523 1 LDPEDLYARLLAG-----QPLFILDVRNESDYERWKIDGENNTPY-FDPYFDFLEIEEDILDQLP--DDQEVTVICA-KE 71 (100)
T ss_pred CCHHHHHHHHHcC-----CCcEEEEeCCHHHHhhcccCCCccccc-ccchHHHHHhhHHHHhhCC--CCCeEEEEcC-CC
Confidence 6899999999875 578999999999999999999999999 5554433110000001122 3345888999 88
Q ss_pred CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013 115 ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 115 ~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~ 153 (258)
.||..++..|+.. ||. |++|+||+.+|.
T Consensus 72 ~rs~~aa~~L~~~----------G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 72 GSSQFVAELLAER----------GYD-VDYLAGGMKAWS 99 (100)
T ss_pred CcHHHHHHHHHHc----------Cce-eEEeCCcHHhhc
Confidence 9999999999999 998 999999999995
No 8
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.80 E-value=3.2e-19 Score=137.48 Aligned_cols=100 Identities=18% Similarity=0.431 Sum_probs=81.9
Q ss_pred CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013 30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH 109 (258)
Q Consensus 30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y 109 (258)
..++.|++++|.+++++ ++.+|||+|++.||..||||||+|+|. ..+.. ++.. ...+ ..+|+|
T Consensus 2 ~~~~~is~~el~~~l~~------~~~~ivDvR~~~e~~~ghi~gA~~ip~-~~l~~-~~~~-------~~~~--~~ivv~ 64 (108)
T PRK00162 2 DQFECINVEQAHQKLQE------GGAVLVDIRDPQSFAMGHAPGAFHLTN-DSLGA-FMRQ-------ADFD--TPVMVM 64 (108)
T ss_pred CCccccCHHHHHHHHHc------CCCEEEEcCCHHHHhcCCCCCCeECCH-HHHHH-HHHh-------cCCC--CCEEEE
Confidence 35788999999999976 568899999999999999999999998 55433 2221 2233 347788
Q ss_pred cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcc
Q psy1013 110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQ 157 (258)
Q Consensus 110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~ 157 (258)
|. ++.++..++..|+.. ||++|++|+||+.+|...+.
T Consensus 65 c~-~g~~s~~a~~~L~~~----------G~~~v~~l~GG~~~w~~~~~ 101 (108)
T PRK00162 65 CY-HGNSSQGAAQYLLQQ----------GFDVVYSIDGGFEAWRRTFP 101 (108)
T ss_pred eC-CCCCHHHHHHHHHHC----------CchheEEecCCHHHHHhcCC
Confidence 98 788999999999999 99999999999999988543
No 9
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.80 E-value=2.7e-19 Score=142.37 Aligned_cols=101 Identities=27% Similarity=0.429 Sum_probs=75.4
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHH---------------------hhHHH
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI---------------------ESKVH 93 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~---------------------~~~~~ 93 (258)
||++|+.+++++ +.+|||||++.||..||||||+|+|+ ........ ...+.
T Consensus 1 ~s~~el~~~l~~-------~~~iiDvR~~~e~~~ghIpgAinip~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (128)
T cd01520 1 ITAEDLLALRKA-------DGPLIDVRSPKEFFEGHLPGAINLPL-LDDEERALVGTLYKQQGREAAIELGLELVSGKLK 72 (128)
T ss_pred CCHHHHHHHHhc-------CCEEEECCCHHHhccCcCCCcEEccC-CChhHHHHhhhheeccCHHHHHHHHHHHHhhhHH
Confidence 789999999873 47899999999999999999999999 43321100 00000
Q ss_pred ---hhcc-ccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013 94 ---AQSN-ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 94 ---~~~~-~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
.... ..-++...||+||..++.||.++++.|+.+ || +|++|+||+.+|..
T Consensus 73 ~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~----------G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 73 RILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESL----------GI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHc----------CC-ceeEeCCcHHHHHh
Confidence 0000 112344558999986789999999999999 99 69999999999975
No 10
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.79 E-value=1.9e-19 Score=137.49 Aligned_cols=102 Identities=21% Similarity=0.356 Sum_probs=76.3
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHH--HHhhHHHhhccccCCCceEEEEecCC
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE--FIESKVHAQSNATCDKRRVLIFHCEY 112 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~--~~~~~~~~~~~~~~~~~~~vV~yc~~ 112 (258)
||++||.+++..+ .++++|||||++.||..||||||+|+|. +.+... ..... .........+...||+||.
T Consensus 1 is~~~l~~~l~~~----~~~~~liDvR~~~e~~~ghIpgA~~ip~-~~~~~~~~~~~~~-~~~~~~~~~~~~~vv~~c~- 73 (105)
T cd01525 1 ISVYDVIRLLDNS----PAKLAAVDIRSSPDFRRGHIEGSINIPF-SSVFLKEGELEQL-PTVPRLENYKGKIIVIVSH- 73 (105)
T ss_pred CCHHHHHHHHhCC----CCCeEEEECCCHHHHhCCccCCCEeCCH-HHhcccccccccc-cchHHHHhhcCCeEEEEeC-
Confidence 7899999999862 1378999999999999999999999998 544211 00000 0000001122455889998
Q ss_pred CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013 113 SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 113 s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~ 153 (258)
++.++..+++.|+.. ||++|++|+||+.+|+
T Consensus 74 ~g~~s~~~a~~L~~~----------G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 74 SHKHAALFAAFLVKC----------GVPRVCILDGGINALK 104 (105)
T ss_pred CCccHHHHHHHHHHc----------CCCCEEEEeCcHHHhc
Confidence 788999999999999 9999999999999995
No 11
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.79 E-value=7.5e-19 Score=138.54 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=81.8
Q ss_pred CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHh--hHHHhhccccCCCceEEEE
Q psy1013 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIE--SKVHAQSNATCDKRRVLIF 108 (258)
Q Consensus 31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~--~~~~~~~~~~~~~~~~vV~ 108 (258)
....|++++|.++++.+ .+.+|||+|++.||+.||||||+|+|. ..+...... ......... ++...||+
T Consensus 6 ~~~~is~~el~~~~~~~-----~~~~ivDvR~~~e~~~~hIpgai~ip~-~~~~~~~~~~~~~~~~~~~~--~~~~~ivv 77 (122)
T cd01526 6 PEERVSVKDYKNILQAG-----KKHVLLDVRPKVHFEICRLPEAINIPL-SELLSKAAELKSLQELPLDN--DKDSPIYV 77 (122)
T ss_pred cccccCHHHHHHHHhCC-----CCeEEEEcCCHHHhhcccCCCCeEccH-HHHhhhhhhhhhhhhccccc--CCCCcEEE
Confidence 34679999999999764 578999999999999999999999999 655432110 000001111 33445889
Q ss_pred ecCCCCCcHHHHHHHHHHhHHhcccCCCCCC-CCeEEecchHHHHHHh
Q psy1013 109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDY-PEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy-~~V~iL~GG~~~w~~~ 155 (258)
||. ++.|+..+++.|+.. || .+|++|+||+.+|..+
T Consensus 78 ~C~-~G~rs~~aa~~L~~~----------G~~~~v~~l~GG~~~W~~~ 114 (122)
T cd01526 78 VCR-RGNDSQTAVRKLKEL----------GLERFVRDIIGGLKAWADK 114 (122)
T ss_pred ECC-CCCcHHHHHHHHHHc----------CCccceeeecchHHHHHHH
Confidence 999 788999999999999 99 7999999999999874
No 12
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.79 E-value=7.5e-19 Score=134.69 Aligned_cols=101 Identities=30% Similarity=0.589 Sum_probs=73.9
Q ss_pred CHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhh-------hHHHHhhHHHhhccccCCCceEEEE
Q psy1013 36 SPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHL-------VKEFIESKVHAQSNATCDKRRVLIF 108 (258)
Q Consensus 36 s~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l-------~~~~~~~~~~~~~~~~~~~~~~vV~ 108 (258)
||+||.+++.+ ++++|||||++.+|..||||||+|+|. ..+ .......... ......++...|||
T Consensus 1 s~~el~~~l~~------~~~~liD~R~~~~~~~~hI~ga~~i~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iv~ 72 (113)
T PF00581_consen 1 SPEELKEMLEN------ESVLLIDVRSPEEYERGHIPGAVNIPF-PSLDPDEPSLSEDKLDEFLK-ELGKKIDKDKDIVF 72 (113)
T ss_dssp -HHHHHHHHTT------TTEEEEEESSHHHHHHSBETTEEEEEG-GGGSSSSSBCHHHHHHHHHH-HHTHGSTTTSEEEE
T ss_pred CHHHHHhhhhC------CCeEEEEeCCHHHHHcCCCCCCccccc-cccccccccccccccccccc-ccccccccccccee
Confidence 68999999944 789999999999999999999999999 332 1111111111 11122244456799
Q ss_pred ecCCCCCcHHHHHHH-----HHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 109 HCEYSAERGPTLSRY-----LRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 109 yc~~s~~rs~~~a~~-----L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
||. ++.++..++.. |..+ ||++|++|+|||.+|.++
T Consensus 73 yc~-~~~~~~~~~~~~~~~~l~~~----------g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 73 YCS-SGWRSGSAAAARVAWILKKL----------GFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp EES-SSCHHHHHHHHHHHHHHHHT----------TTSSEEEETTHHHHHHHH
T ss_pred eee-cccccchhHHHHHHHHHHHc----------CCCCEEEecChHHHHhcC
Confidence 996 78888777666 7777 999999999999999863
No 13
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.78 E-value=9.6e-19 Score=133.14 Aligned_cols=97 Identities=20% Similarity=0.363 Sum_probs=78.1
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCC
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSA 114 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~ 114 (258)
|++++|.+++..+ ..+.+|||+|++.||..+|||||+|+|+ ..+.. .... +.. .++...||+||. ++
T Consensus 2 i~~~~l~~~~~~~----~~~~~iiDvR~~~e~~~~hI~ga~~ip~-~~~~~-~~~~-----~~~-~~~~~~vv~~c~-~g 68 (101)
T cd01528 2 ISVAELAEWLADE----REEPVLIDVREPEELEIAFLPGFLHLPM-SEIPE-RSKE-----LDS-DNPDKDIVVLCH-HG 68 (101)
T ss_pred CCHHHHHHHHhcC----CCCCEEEECCCHHHHhcCcCCCCEecCH-HHHHH-HHHH-----hcc-cCCCCeEEEEeC-CC
Confidence 7899999999862 0258899999999999999999999999 55543 2221 111 133456899999 78
Q ss_pred CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013 115 ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 115 ~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
.|+..++..|+.. ||++|++|+||+.+|..
T Consensus 69 ~rs~~~~~~l~~~----------G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 69 GRSMQVAQWLLRQ----------GFENVYNLQGGIDAWSL 98 (101)
T ss_pred chHHHHHHHHHHc----------CCccEEEecCCHHHHhh
Confidence 9999999999998 99999999999999976
No 14
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.78 E-value=7.4e-19 Score=134.38 Aligned_cols=100 Identities=26% Similarity=0.369 Sum_probs=76.5
Q ss_pred CHHHHHHHHh-cccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHH--hhHHHhhcc-ccCCCceEEEEecC
Q psy1013 36 SPDTLARLIR-GEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI--ESKVHAQSN-ATCDKRRVLIFHCE 111 (258)
Q Consensus 36 s~~~L~~~l~-~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~--~~~~~~~~~-~~~~~~~~vV~yc~ 111 (258)
|++++.++++ + ++++|||+|++.||..||||||+|+|. ..+..... ...+...+. ...++...||+||.
T Consensus 2 ~~~~~~~~l~~~------~~~~iiDvR~~~e~~~ghIpgA~~ip~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~ 74 (106)
T cd01519 2 SFEEVKNLPNPH------PNKVLIDVREPEELKTGKIPGAINIPL-SSLPDALALSEEEFEKKYGFPKPSKDKELIFYCK 74 (106)
T ss_pred cHHHHHHhcCCC------CCEEEEECCCHHHHhcCcCCCcEEech-HHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECC
Confidence 6788999887 4 679999999999999999999999999 55432211 001111111 11234456899999
Q ss_pred CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013 112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~ 153 (258)
++.++..+++.|+.+ ||++|++|+||+.+|.
T Consensus 75 -~g~~s~~~~~~l~~~----------G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 75 -AGVRSKAAAELARSL----------GYENVGNYPGSWLDWA 105 (106)
T ss_pred -CcHHHHHHHHHHHHc----------CCccceecCCcHHHHc
Confidence 788999999999999 9999999999999996
No 15
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.78 E-value=9.7e-19 Score=135.93 Aligned_cols=112 Identities=25% Similarity=0.475 Sum_probs=79.8
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE 111 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~ 111 (258)
++.|++++|.+++..+ .++++|||+|++ ||..||||||+|+|. ..+.... ... ..... .+++..||+||.
T Consensus 1 ~~~is~~~l~~~~~~~----~~~~~iiDvR~~-e~~~~hi~gA~~ip~-~~l~~~~-~~~-~~~~~--~~~~~~iv~yC~ 70 (113)
T cd01531 1 VSYISPAQLKGWIRNG----RPPFQVVDVRDE-DYAGGHIKGSWHYPS-TRFKAQL-NQL-VQLLS--GSKKDTVVFHCA 70 (113)
T ss_pred CCcCCHHHHHHHHHcC----CCCEEEEEcCCc-ccCCCcCCCCEecCH-HHHhhCH-HHH-HHHHh--cCCCCeEEEEee
Confidence 4679999999999762 035789999999 999999999999999 5553321 111 00011 133456899999
Q ss_pred CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
+++.|+..++..|.+...... -..||.+|++|+||+.+|.+.
T Consensus 71 ~~~~r~~~aa~~l~~~~~~~~--~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 71 LSQVRGPSAARKFLRYLDEED--LETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred cCCcchHHHHHHHHHHHHHhc--cccCCCeEEEEcChHHHHHhh
Confidence 788899999888755211100 012999999999999999874
No 16
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.78 E-value=9.5e-19 Score=132.48 Aligned_cols=95 Identities=29% Similarity=0.405 Sum_probs=78.6
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE 111 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~ 111 (258)
+..|++++|.++++. + .+|||+|++.||..||||||+|+|. ..+.... ... ++...||+||.
T Consensus 1 ~~~i~~~el~~~~~~------~-~~liDvR~~~e~~~~hi~ga~~ip~-~~~~~~~--------~~~--~~~~~iv~~c~ 62 (99)
T cd01527 1 LTTISPNDACELLAQ------G-AVLVDIREPDEYLRERIPGARLVPL-SQLESEG--------LPL--VGANAIIFHCR 62 (99)
T ss_pred CCccCHHHHHHHHHC------C-CEEEECCCHHHHHhCcCCCCEECCh-hHhcccc--------cCC--CCCCcEEEEeC
Confidence 357999999999885 3 7899999999999999999999999 5543211 112 23345888999
Q ss_pred CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
++.++..+++.|+.. ||.+|++|+||+.+|...
T Consensus 63 -~g~~s~~~~~~L~~~----------g~~~v~~l~gG~~~W~~~ 95 (99)
T cd01527 63 -SGMRTQQNAERLAAI----------SAGEAYVLEGGLDAWKAA 95 (99)
T ss_pred -CCchHHHHHHHHHHc----------CCccEEEeeCCHHHHHHC
Confidence 889999999999999 999999999999999873
No 17
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.78 E-value=1.5e-18 Score=134.94 Aligned_cols=110 Identities=29% Similarity=0.571 Sum_probs=78.8
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE 111 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~ 111 (258)
++.||+++|.+++.++.....++++|||||++ ||..||||||+|+|. ..+...+ ..... . ....+...||+||+
T Consensus 1 ~~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~-~~~~~~~-~~~~~-~--~~~~~~~~iv~~C~ 74 (113)
T cd01443 1 LKYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPA-QSCYQTL-PQVYA-L--FSLAGVKLAIFYCG 74 (113)
T ss_pred CcccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecch-hHHHHHH-HHHHH-H--hhhcCCCEEEEECC
Confidence 46799999999998631112236899999999 999999999999999 6654332 22211 1 11133456899999
Q ss_pred CCCCcHHHHHHHHHHhHHhcccCCCCCC--CCeEEecchHHHHH
Q psy1013 112 YSAERGPTLSRYLRSEDRAHNAYPTLDY--PEMYLLNGGYKQFY 153 (258)
Q Consensus 112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy--~~V~iL~GG~~~w~ 153 (258)
.++.||++++..|....+. +|| .+|++|+||+.+|.
T Consensus 75 ~~g~rs~~a~~~l~~~l~~------~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 75 SSQGRGPRAARWFADYLRK------VGESLPKSYILTGGIKAWY 112 (113)
T ss_pred CCCcccHHHHHHHHHHHhc------cCCCCCeEEEECChhhhhc
Confidence 6678999988776654322 264 78999999999995
No 18
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.77 E-value=1.6e-18 Score=129.24 Aligned_cols=89 Identities=30% Similarity=0.529 Sum_probs=73.3
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCC
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSA 114 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~ 114 (258)
++++++.+++. ++.+|||+|++.+|..||||||+|+|. +++... .. ....+ ..||+||. ++
T Consensus 1 ~~~~e~~~~~~-------~~~~iiD~R~~~~~~~~hipgA~~ip~-~~~~~~-~~-------~~~~~--~~vvl~c~-~g 61 (90)
T cd01524 1 VQWHELDNYRA-------DGVTLIDVRTPQEFEKGHIKGAINIPL-DELRDR-LN-------ELPKD--KEIIVYCA-VG 61 (90)
T ss_pred CCHHHHHHHhc-------CCCEEEECCCHHHHhcCCCCCCEeCCH-HHHHHH-HH-------hcCCC--CcEEEEcC-CC
Confidence 57899999883 567899999999999999999999999 654332 11 12223 34889999 78
Q ss_pred CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013 115 ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 115 ~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~ 153 (258)
.++..+++.|+.. || +|++|+||+.+|+
T Consensus 62 ~~a~~~a~~L~~~----------G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 62 LRGYIAARILTQN----------GF-KVKNLDGGYKTYS 89 (90)
T ss_pred hhHHHHHHHHHHC----------CC-CEEEecCCHHHhc
Confidence 8999999999998 99 9999999999996
No 19
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.77 E-value=1.8e-18 Score=129.79 Aligned_cols=93 Identities=25% Similarity=0.519 Sum_probs=77.8
Q ss_pred ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc--CCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013 34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG--GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE 111 (258)
Q Consensus 34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~--gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~ 111 (258)
.|+++++.++++++ .+++|||+|++.||.. ||||||+|+|. ..+.. ... ..+ +...||+||.
T Consensus 1 ~i~~~~~~~~~~~~-----~~~~ivDvR~~~e~~~~~~hi~ga~~ip~-~~~~~-~~~-------~~~--~~~~ivv~c~ 64 (96)
T cd01444 1 RISVDELAELLAAG-----EAPVLLDVRDPASYAALPDHIPGAIHLDE-DSLDD-WLG-------DLD--RDRPVVVYCY 64 (96)
T ss_pred CcCHHHHHHHHhcC-----CCcEEEECCCHHHHhcccCCCCCCeeCCH-HHHHH-HHh-------hcC--CCCCEEEEeC
Confidence 37899999998864 5689999999999999 99999999999 55432 221 122 3445889999
Q ss_pred CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013 112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~ 153 (258)
++.++..+++.|+.. ||++|++|+||+.+|.
T Consensus 65 -~g~~s~~a~~~l~~~----------G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 65 -HGNSSAQLAQALREA----------GFTDVRSLAGGFEAWR 95 (96)
T ss_pred -CCChHHHHHHHHHHc----------CCceEEEcCCCHHHhc
Confidence 999999999999999 9999999999999995
No 20
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.77 E-value=1.4e-18 Score=131.87 Aligned_cols=100 Identities=22% Similarity=0.417 Sum_probs=76.3
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhh-ccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCC
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-KGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYS 113 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey-~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s 113 (258)
||++++.+++++ ++.+|||+|++.+| ..||||||+|+|. ..+.. ...... ......-++...||+||. +
T Consensus 1 is~~el~~~~~~------~~~~iiDvR~~~~~~~~ghIpga~~ip~-~~~~~-~~~~~~-~~~~~~~~~~~~ivv~c~-~ 70 (103)
T cd01447 1 LSPEDARALLGS------PGVLLVDVRDPRELERTGMIPGAFHAPR-GMLEF-WADPDS-PYHKPAFAEDKPFVFYCA-S 70 (103)
T ss_pred CCHHHHHHHHhC------CCeEEEECCCHHHHHhcCCCCCcEEccc-chhhh-hcCccc-cccccCCCCCCeEEEEcC-C
Confidence 689999999986 56899999999998 5799999999998 54432 111100 000001134456899998 7
Q ss_pred CCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013 114 AERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 114 ~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
+.++..+++.|+.. ||++|++|+||+.+|..
T Consensus 71 g~~s~~~~~~l~~~----------G~~~v~~l~Gg~~~w~~ 101 (103)
T cd01447 71 GWRSALAGKTLQDM----------GLKPVYNIEGGFKDWKE 101 (103)
T ss_pred CCcHHHHHHHHHHc----------ChHHhEeecCcHHHHhh
Confidence 88999999999998 99999999999999975
No 21
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.76 E-value=1.1e-18 Score=136.75 Aligned_cols=99 Identities=16% Similarity=0.351 Sum_probs=78.8
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhc-cCCcCCceeCCCchhhhH-----HHHhhHHHhhccccCCCceEEEE
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK-GGHIQGALNIYTREHLVK-----EFIESKVHAQSNATCDKRRVLIF 108 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~-~gHIpGAvnip~~~~l~~-----~~~~~~~~~~~~~~~~~~~~vV~ 108 (258)
||++++.++++++ ++.+|||+|++.||+ .||||||+|+|. .++.. .+.. .+.. .. ++...||+
T Consensus 1 is~~el~~~l~~~-----~~~~vIDvR~~~e~~~~ghIpgA~~ip~-~~~~~~~~~~~~~~-~l~~--~~--~~~~~ivv 69 (117)
T cd01522 1 LTPAEAWALLQAD-----PQAVLVDVRTEAEWKFVGGVPDAVHVAW-QVYPDMEINPNFLA-ELEE--KV--GKDRPVLL 69 (117)
T ss_pred CCHHHHHHHHHhC-----CCeEEEECCCHHHHhcccCCCCceecch-hhccccccCHHHHH-HHHh--hC--CCCCeEEE
Confidence 6899999999874 579999999999999 999999999998 54431 1111 1110 11 23445889
Q ss_pred ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
||. ++.+|..+++.|+.. ||++|++|.|||.+|...
T Consensus 70 ~C~-~G~rs~~aa~~L~~~----------G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 70 LCR-SGNRSIAAAEAAAQA----------GFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred EcC-CCccHHHHHHHHHHC----------CCCeEEECcCceecCCCC
Confidence 998 889999999999999 999999999999999763
No 22
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.75 E-value=3.1e-18 Score=133.45 Aligned_cols=98 Identities=21% Similarity=0.368 Sum_probs=75.9
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc-----------CCcCCceeCCCchhhhHH--------HHhhHHHhh
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG-----------GHIQGALNIYTREHLVKE--------FIESKVHAQ 95 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~-----------gHIpGAvnip~~~~l~~~--------~~~~~~~~~ 95 (258)
||++++.+++++ ++++|||+|++.||.+ ||||||+|+|+ +.+... .+...+. .
T Consensus 1 ~s~~~l~~~l~~------~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~-~~~~~~~~~~~~~~~~~~~~~-~ 72 (118)
T cd01449 1 VTAEEVLANLDS------GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPW-TSLLDEDGTFKSPEELRALFA-A 72 (118)
T ss_pred CCHHHHHHhcCC------CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccCh-HHhcCCCCCcCCHHHHHHHHH-H
Confidence 578999998875 5689999999999987 99999999999 544321 1111111 1
Q ss_pred ccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013 96 SNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 96 ~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~ 153 (258)
... ++...||+||. ++.++.++++.|+.+ ||++|++|+||+.+|.
T Consensus 73 ~~~--~~~~~iv~yc~-~g~~s~~~~~~l~~~----------G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 73 LGI--TPDKPVIVYCG-SGVTACVLLLALELL----------GYKNVRLYDGSWSEWG 117 (118)
T ss_pred cCC--CCCCCEEEECC-cHHHHHHHHHHHHHc----------CCCCeeeeCChHHHhc
Confidence 112 34445899999 688999999999999 9999999999999996
No 23
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.75 E-value=9.5e-18 Score=131.70 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=78.8
Q ss_pred ccCHHHHHHHHhcccCCCCCCeEEEEecCc-------hhhccCCcCCceeCCCchhhhHHH------Hh--hHHHhhc-c
Q psy1013 34 NISPDTLARLIRGEFNDVVDKYLIIDCRYP-------YEYKGGHIQGALNIYTREHLVKEF------IE--SKVHAQS-N 97 (258)
Q Consensus 34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~-------~Ey~~gHIpGAvnip~~~~l~~~~------~~--~~~~~~~-~ 97 (258)
.|++++|.+++.+ ++.+|||||++ .+|..||||||+|+|. .++.... +. ..+.+.+ .
T Consensus 1 ~i~~~~l~~~l~~------~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (122)
T cd01448 1 LVSPDWLAEHLDD------PDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDL-DEDLDDKSPGPHMLPSPEEFAELLGS 73 (122)
T ss_pred CcCHHHHHHHhCC------CCeEEEEeecCCCCCchhhHHhhCCCCCCEEcCh-hhccccCCCCCCCCCCHHHHHHHHHH
Confidence 3789999999986 56899999999 9999999999999998 5543210 00 0000000 0
Q ss_pred ccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013 98 ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 98 ~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
...++...|||||+.++.++..+++.|+.. ||++|++|+||+.+|..
T Consensus 74 ~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~----------G~~~v~~l~GG~~~W~~ 120 (122)
T cd01448 74 LGISNDDTVVVYDDGGGFFAARAWWTLRYF----------GHENVRVLDGGLQAWKA 120 (122)
T ss_pred cCCCCCCEEEEECCCCCccHHHHHHHHHHc----------CCCCEEEecCCHHHHHh
Confidence 112455668999994468999999999999 99999999999999986
No 24
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.74 E-value=1.5e-17 Score=132.72 Aligned_cols=115 Identities=26% Similarity=0.438 Sum_probs=78.4
Q ss_pred ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHh-h-----------HHHhhccccCC
Q psy1013 34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIE-S-----------KVHAQSNATCD 101 (258)
Q Consensus 34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~-~-----------~~~~~~~~~~~ 101 (258)
.|++++|.++++.+ .++++|||||.+.+|+.||||||+|+|. ..+...... . .....+ ...
T Consensus 1 ~is~~~l~~~l~~~----~~~~~iiDvR~~~~~~~~hI~~ai~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~ 73 (132)
T cd01446 1 TIDCAWLAALLREG----GERLLLLDCRPFLEYSSSHIRGAVNVCC-PTILRRRLQGGKILLQQLLSCPEDRDRL--RRG 73 (132)
T ss_pred CcCHHHHHHHHhcC----CCCEEEEECCCHHHHhhCcccCcEecCh-HHHHHHhhcccchhhhhhcCCHHHHHHH--hcC
Confidence 48999999999852 1479999999999999999999999999 543221100 0 000011 111
Q ss_pred CceEEEEecCCCCC-----cHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccc
Q psy1013 102 KRRVLIFHCEYSAE-----RGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC 160 (258)
Q Consensus 102 ~~~~vV~yc~~s~~-----rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~ 160 (258)
+...||+||+.+.. -+.++++.++.+.+.. .++.+|++|+|||.+|.+.||++|
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~v~~L~GG~~~w~~~~p~~~ 132 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKL-----QEGCSVYLLKGGFEQFSSEFPELC 132 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhc-----CCCceEEEEcchHHHHHhhCcccC
Confidence 34568999995542 2444555555552210 156789999999999999999988
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.74 E-value=7.7e-18 Score=125.43 Aligned_cols=92 Identities=34% Similarity=0.585 Sum_probs=69.7
Q ss_pred CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhh---HH-HhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhH
Q psy1013 53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES---KV-HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128 (258)
Q Consensus 53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~---~~-~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~ 128 (258)
++++|||||++.||+.||||||+|+|. ..+....... .. .........+...||+||. ++.++..+++.|+..
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~-~g~~a~~~~~~l~~~- 79 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPL-SELLDRRGELDILEFEELLKRLGLDKDKPVVVYCR-SGNRSAKAAWLLREL- 79 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCH-HHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeC-CCcHHHHHHHHHHHc-
Confidence 679999999999999999999999999 5543221000 00 0000112244566899996 899999999999999
Q ss_pred HhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQH 156 (258)
Q Consensus 129 r~~n~yp~lGy~~V~iL~GG~~~w~~~~ 156 (258)
||++|++|+||+.+|...+
T Consensus 80 ---------G~~~v~~l~GG~~~w~~~~ 98 (100)
T smart00450 80 ---------GFKNVYLLDGGYKEWSAAG 98 (100)
T ss_pred ---------CCCceEEecCCHHHHHhcC
Confidence 9999999999999999854
No 26
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.73 E-value=2.1e-17 Score=127.93 Aligned_cols=98 Identities=15% Similarity=0.316 Sum_probs=77.0
Q ss_pred CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCC
Q psy1013 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEY 112 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~ 112 (258)
..|++++|.+++.++ .++++|||+|++.||..||||||+|+|. ..+...... ..+ +...||+||..
T Consensus 8 ~~~s~~el~~~l~~~----~~~~~iiDvR~~~e~~~ghIpgA~~ip~-~~l~~~~~~-------~i~--~~~~vvvyc~~ 73 (110)
T cd01521 8 FETDCWDVAIALKNG----KPDFVLVDVRSAEAYARGHVPGAINLPH-REICENATA-------KLD--KEKLFVVYCDG 73 (110)
T ss_pred eecCHHHHHHHHHcC----CCCEEEEECCCHHHHhcCCCCCCEeCCH-HHhhhHhhh-------cCC--CCCeEEEEECC
Confidence 468999999999852 0358999999999999999999999999 554322111 122 34458899984
Q ss_pred CC-CcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 113 SA-ERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 113 s~-~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
+. .++..+++.|+.. ||+ |++|+||+.+|...
T Consensus 74 g~~~~s~~~a~~l~~~----------G~~-v~~l~GG~~~W~~~ 106 (110)
T cd01521 74 PGCNGATKAALKLAEL----------GFP-VKEMIGGLDWWKRE 106 (110)
T ss_pred CCCchHHHHHHHHHHc----------CCe-EEEecCCHHHHHHC
Confidence 33 4899999999999 995 99999999999874
No 27
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.73 E-value=6.1e-18 Score=127.53 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=65.7
Q ss_pred CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013 53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN 132 (258)
Q Consensus 53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n 132 (258)
++++|||+|++.||..||||||+|+|. .++.... ..... +.. ..+...||+||. ++.++..+++.|+..
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~-~~~~~~~--~~~~~-~~~-~~~~~~ivv~c~-~g~~s~~~~~~l~~~----- 79 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPG-AALVLRS--QELQA-LEA-PGRATRYVLTCD-GSLLARFAAQELLAL----- 79 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCH-HHhcCCH--HHHHH-hhc-CCCCCCEEEEeC-ChHHHHHHHHHHHHc-----
Confidence 678999999999999999999999998 5442111 01100 111 133445889998 888999999999888
Q ss_pred cCCCCCCCCeEEecchHHHHH
Q psy1013 133 AYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 133 ~yp~lGy~~V~iL~GG~~~w~ 153 (258)
||++|++|+||+.+|.
T Consensus 80 -----G~~~v~~l~GG~~~W~ 95 (96)
T cd01529 80 -----GGKPVALLDGGTSAWV 95 (96)
T ss_pred -----CCCCEEEeCCCHHHhc
Confidence 9999999999999996
No 28
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.73 E-value=4.3e-17 Score=134.98 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=78.9
Q ss_pred CCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCch----hhccC---------CcCCceeCCCc--hhhhHH---HHh
Q psy1013 28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPY----EYKGG---------HIQGALNIYTR--EHLVKE---FIE 89 (258)
Q Consensus 28 ~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~----Ey~~g---------HIpGAvnip~~--~~l~~~---~~~ 89 (258)
.......||++|+.+++++ ++.+|||||++. ||..| |||||+|+|.. ..+... .+.
T Consensus 31 ~~~~~~~vs~~el~~~l~~------~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~ 104 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLAR------GPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFR 104 (162)
T ss_pred ccCCccccCHHHHHHHHhC------CCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHH
Confidence 4466889999999999987 568899999865 45544 99999999851 111110 011
Q ss_pred hHHHhhccccCCCceEEEEecCCCCC-cHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 90 SKVHAQSNATCDKRRVLIFHCEYSAE-RGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 90 ~~~~~~~~~~~~~~~~vV~yc~~s~~-rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
..+... ...+++..||+||. ++. +|..+++.|+.+ ||.+|++|+||+.+|...
T Consensus 105 ~~l~~~--~~~~~d~~IVvYC~-~G~~~S~~aa~~L~~~----------G~~~V~~l~GG~~aW~~a 158 (162)
T TIGR03865 105 RGLERA--TGGDKDRPLVFYCL-ADCWMSWNAAKRALAY----------GYSNVYWYPDGTDGWQAA 158 (162)
T ss_pred HHHHHh--cCCCCCCEEEEEEC-CCCHHHHHHHHHHHhc----------CCcceEEecCCHHHHHHc
Confidence 111110 11135556899999 554 899999999999 999999999999999874
No 29
>PLN02160 thiosulfate sulfurtransferase
Probab=99.72 E-value=1.6e-17 Score=133.82 Aligned_cols=105 Identities=20% Similarity=0.327 Sum_probs=80.7
Q ss_pred CCCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCc--eeCCCchhhh-------HHHHhhHHHhhccc
Q psy1013 28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGA--LNIYTREHLV-------KEFIESKVHAQSNA 98 (258)
Q Consensus 28 ~~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGA--vnip~~~~l~-------~~~~~~~~~~~~~~ 98 (258)
+...++.|+++++.+++++ + .+|||||++.||..|||||| +|+|+ ..+. ..+.... . . ..
T Consensus 10 ~~~~~~~i~~~e~~~~~~~------~-~~lIDVR~~~E~~~ghIpgA~~iniP~-~~~~~~~~l~~~~~~~~~-~-~-~~ 78 (136)
T PLN02160 10 KAEEVVSVDVSQAKTLLQS------G-HQYLDVRTQDEFRRGHCEAAKIVNIPY-MLNTPQGRVKNQEFLEQV-S-S-LL 78 (136)
T ss_pred CceeeeEeCHHHHHHHHhC------C-CEEEECCCHHHHhcCCCCCcceecccc-hhcCcccccCCHHHHHHH-H-h-cc
Confidence 3446788999999999975 2 47999999999999999999 89997 2211 1111111 0 0 11
Q ss_pred cCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013 99 TCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH 156 (258)
Q Consensus 99 ~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~ 156 (258)
++...||+||. +|.||..++..|... ||.+|++|+||+.+|....
T Consensus 79 --~~~~~IivyC~-sG~RS~~Aa~~L~~~----------G~~~v~~l~GG~~~W~~~g 123 (136)
T PLN02160 79 --NPADDILVGCQ-SGARSLKATTELVAA----------GYKKVRNKGGGYLAWVDHS 123 (136)
T ss_pred --CCCCcEEEECC-CcHHHHHHHHHHHHc----------CCCCeeecCCcHHHHhhCC
Confidence 23345899999 999999999999998 9999999999999999853
No 30
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.72 E-value=2.2e-17 Score=161.93 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=102.6
Q ss_pred CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhH------------HHHhhHHHhhccccC
Q psy1013 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVK------------EFIESKVHAQSNATC 100 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~------------~~~~~~~~~~~~~~~ 100 (258)
..||++||.+++++ ++++|||||++.+|..||||||+|+++ +.... ..+...+. .+. -
T Consensus 9 ~lIs~~eL~~~l~~------~~vvIIDvR~~~eY~~GHIPGAv~i~~-~~~~~~~~~~~~~lp~~~~l~~~l~-~lG--I 78 (610)
T PRK09629 9 LVIEPNDLLERLDA------PELILVDLTSSARYEAGHIRGARFVDP-KRTQLGKPPAPGLLPDTADLEQLFG-ELG--H 78 (610)
T ss_pred ceecHHHHHHHhcC------CCEEEEECCChHHHHhCCCCCcEEcCh-hHhhccCCCCCCCCCCHHHHHHHHH-HcC--C
Confidence 35999999999987 679999999999999999999999986 32110 01111111 122 2
Q ss_pred CCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCcccccccc
Q psy1013 101 DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSE 180 (258)
Q Consensus 101 ~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ak~~re~ 180 (258)
+++..||+||..++.++.+++|.|+.+ ||++|++|+||+.+|..+......+ .......+|..+..++.
T Consensus 79 ~~d~~VVvYd~~g~~~A~R~~w~L~~~----------G~~~V~iLdGG~~aW~~ag~p~~~~-~~~~~~~~~~~~~~~~~ 147 (610)
T PRK09629 79 NPDAVYVVYDDEGGGWAGRFIWLLDVI----------GHSGYHYLDGGVLAWEAQALPLSTD-VPPVAGGPVTLTLHDEP 147 (610)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHc----------CCCCEEEcCCCHHHHHHcCCccccC-CCCCCCcceeeccCCcc
Confidence 455668999996667899999999999 9999999999999999864333221 22223334544444433
Q ss_pred ccccc-CCCCCCCCceeeechhhH
Q psy1013 181 DRAHN-AYPTLDYPEMYLLNGGYK 203 (258)
Q Consensus 181 dr~~n-~~p~l~ype~~~ld~g~~ 203 (258)
..+.+ ....+..+++.|||.--.
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~ 171 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAP 171 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCc
Confidence 33322 444556677888888643
No 31
>PRK01415 hypothetical protein; Validated
Probab=99.72 E-value=3.5e-17 Score=143.52 Aligned_cols=105 Identities=26% Similarity=0.403 Sum_probs=83.7
Q ss_pred CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC 110 (258)
Q Consensus 31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc 110 (258)
.-+.|+++++.+++++ ++++|||||+++||..||||||+|+|. ..+.+ +. ......... .+...||+||
T Consensus 110 ~g~~i~p~e~~~ll~~------~~~vvIDVRn~~E~~~Ghi~gAinip~-~~f~e-~~-~~~~~~~~~--~k~k~Iv~yC 178 (247)
T PRK01415 110 KGEYIEPKDWDEFITK------QDVIVIDTRNDYEVEVGTFKSAINPNT-KTFKQ-FP-AWVQQNQEL--LKGKKIAMVC 178 (247)
T ss_pred CccccCHHHHHHHHhC------CCcEEEECCCHHHHhcCCcCCCCCCCh-HHHhh-hH-HHHhhhhhh--cCCCeEEEEC
Confidence 4578999999999987 689999999999999999999999998 55432 11 110001112 3444588999
Q ss_pred CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcc
Q psy1013 111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQ 157 (258)
Q Consensus 111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~ 157 (258)
. +|.|+..++..|++. ||++|+.|+||+.+|.++.+
T Consensus 179 t-gGiRs~kAa~~L~~~----------Gf~~Vy~L~GGi~~w~~~~~ 214 (247)
T PRK01415 179 T-GGIRCEKSTSLLKSI----------GYDEVYHLKGGILQYLEDTQ 214 (247)
T ss_pred C-CChHHHHHHHHHHHc----------CCCcEEEechHHHHHHHhcc
Confidence 8 999999999999999 99999999999999998543
No 32
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.72 E-value=1.5e-17 Score=134.25 Aligned_cols=104 Identities=23% Similarity=0.282 Sum_probs=76.1
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCc--------hhhcc------------CCcCCceeCCCchhhhHH------HH
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYP--------YEYKG------------GHIQGALNIYTREHLVKE------FI 88 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~--------~Ey~~------------gHIpGAvnip~~~~l~~~------~~ 88 (258)
||++||.++++++. ..++++|||+|.. .+|.+ ||||||+|+|+ ..+... .+
T Consensus 1 vs~e~l~~~l~~~~--~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~-~~~~~~~~~~~~~~ 77 (138)
T cd01445 1 KSTEQLAENLEAGK--VGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDF-EECLDEAGFEESME 77 (138)
T ss_pred CCHHHHHHHhhccc--cCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCH-HHhhCcCCCCCCCC
Confidence 68999999998421 0167999999987 88998 99999999998 443210 01
Q ss_pred hh--HHH---hhccccCCCceEEEEecCC--CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHH
Q psy1013 89 ES--KVH---AQSNATCDKRRVLIFHCEY--SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 89 ~~--~~~---~~~~~~~~~~~~vV~yc~~--s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~ 153 (258)
+. .+. ..+.+ +....||+||+. .+..+.++++.|+.+ ||++|++|+||+.+|.
T Consensus 78 p~~~~~~~~~~~~GI--~~~~~vVvY~~~~~~g~~A~r~~~~l~~~----------G~~~v~ildGG~~~W~ 137 (138)
T cd01445 78 PSEAEFAAMFEAKGI--DLDKHLIATDGDDLGGFTACHIALAARLC----------GHPDVAILDGGFFEWF 137 (138)
T ss_pred CCHHHHHHHHHHcCC--CCCCeEEEECCCCCcchHHHHHHHHHHHc----------CCCCeEEeCCCHHHhh
Confidence 00 111 11122 344568999973 367899999999998 9999999999999996
No 33
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.72 E-value=2.3e-17 Score=123.72 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCc--HHHHHHHHHHhHHh
Q psy1013 53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAER--GPTLSRYLRSEDRA 130 (258)
Q Consensus 53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~r--s~~~a~~L~~~~r~ 130 (258)
++++|||+|++.||..||||||+|+|. ..+...... . . .++...||+||. +|.+ +..+++.|+..
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~-~~~~~~~~~------~-~-~~~~~~ivl~c~-~G~~~~s~~aa~~L~~~--- 75 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPL-SRLELDAWV------R-I-PRRDTPIVVYGE-GGGEDLAPRAARRLSEL--- 75 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCH-HHHHhhhHh------h-C-CCCCCeEEEEeC-CCCchHHHHHHHHHHHc---
Confidence 679999999999999999999999998 554322111 1 1 123445889999 6665 68889999999
Q ss_pred cccCCCCCCCCeEEecchHHHHHH
Q psy1013 131 HNAYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 131 ~n~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
||++|++|+||+.+|.+
T Consensus 76 -------G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 76 -------GYTDVALLEGGLQGWRA 92 (92)
T ss_pred -------CccCEEEccCCHHHHcC
Confidence 99999999999999963
No 34
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.71 E-value=2.3e-17 Score=121.11 Aligned_cols=81 Identities=30% Similarity=0.510 Sum_probs=67.0
Q ss_pred CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013 53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN 132 (258)
Q Consensus 53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n 132 (258)
++++|||+|++.||+.||||||+|+|. ..+...... ....+...||+||. ++.++..+++.|+..
T Consensus 9 ~~~~iiD~R~~~~~~~~~i~ga~~~~~-~~~~~~~~~--------~~~~~~~~vv~~c~-~~~~a~~~~~~l~~~----- 73 (89)
T cd00158 9 EDAVLLDVREPEEYAAGHIPGAINIPL-SELEERAAL--------LELDKDKPIVVYCR-SGNRSARAAKLLRKA----- 73 (89)
T ss_pred CCeEEEECCCHHHHhccccCCCEecch-HHHhhHHHh--------hccCCCCeEEEEeC-CCchHHHHHHHHHHh-----
Confidence 789999999999999999999999999 554433211 12234456889999 688999999999999
Q ss_pred cCCCCCCCCeEEecchHHHHH
Q psy1013 133 AYPTLDYPEMYLLNGGYKQFY 153 (258)
Q Consensus 133 ~yp~lGy~~V~iL~GG~~~w~ 153 (258)
||.+|++|+||+.+|.
T Consensus 74 -----G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 74 -----GGTNVYNLEGGMLAWK 89 (89)
T ss_pred -----CcccEEEecCChhhcC
Confidence 9999999999999994
No 35
>KOG1530|consensus
Probab=99.71 E-value=2.1e-17 Score=129.36 Aligned_cols=105 Identities=23% Similarity=0.402 Sum_probs=83.4
Q ss_pred CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhH-------HHHhhHHHhhccccCC
Q psy1013 29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVK-------EFIESKVHAQSNATCD 101 (258)
Q Consensus 29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~-------~~~~~~~~~~~~~~~~ 101 (258)
.+....++.+++.++++. ++.++||||+|+||..||||.+||||+ ..... +|... -....+.
T Consensus 19 ~~~~~sv~~~qvk~L~~~------~~~~llDVRepeEfk~gh~~~siNiPy-~~~~~~~~l~~~eF~kq----vg~~kp~ 87 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQH------PDVVLLDVREPEEFKQGHIPASINIPY-MSRPGAGALKNPEFLKQ----VGSSKPP 87 (136)
T ss_pred cCCcEEEEHHHHHHHhcC------CCEEEEeecCHHHhhccCCcceEeccc-cccccccccCCHHHHHH----hcccCCC
Confidence 355678999999999997 569999999999999999999999998 22211 22221 1111222
Q ss_pred CceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 102 KRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 102 ~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
...-|||+|. ||.|+-.|...|... ||.+|.++.|||.+|...
T Consensus 88 ~d~eiIf~C~-SG~Rs~~A~~~l~s~----------Gyknv~ny~Gs~~~W~~k 130 (136)
T KOG1530|consen 88 HDKEIIFGCA-SGVRSLKATKILVSA----------GYKNVGNYPGSYLAWVDK 130 (136)
T ss_pred CCCcEEEEec-cCcchhHHHHHHHHc----------CcccccccCccHHHHHHc
Confidence 3335899999 999999999999999 999999999999999874
No 36
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.71 E-value=3.8e-17 Score=146.47 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=101.3
Q ss_pred CccCHHHHHHHHhcccCCCCCCeEEEEecC----------chhhccCCcCCceeCCCchhhhHH------HHh--hHH--
Q psy1013 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRY----------PYEYKGGHIQGALNIYTREHLVKE------FIE--SKV-- 92 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~----------~~Ey~~gHIpGAvnip~~~~l~~~------~~~--~~~-- 92 (258)
..||++||.+++++ ++++|||||+ +.+|..||||||+|+|+ +.+... ++. ..+
T Consensus 5 ~lvs~~~l~~~l~~------~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (281)
T PRK11493 5 WFVAADWLAEHIDD------PEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDI-EALSDHTSPLPHMMPRPETFAV 77 (281)
T ss_pred cccCHHHHHHhcCC------CCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCH-HHhcCCCCCCCCCCCCHHHHHH
Confidence 35999999999987 6799999996 67899999999999987 443210 000 001
Q ss_pred -HhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCC
Q psy1013 93 -HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPG 171 (258)
Q Consensus 93 -~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~ 171 (258)
...+.+ ++...||+||..+...+.++++.|+.. ||++|++|+||+.+|.+....+.. +...+...+
T Consensus 78 ~~~~~Gi--~~d~~VVvyc~~~~~~a~~~~~~l~~~----------G~~~v~~l~GG~~~W~~~g~p~~~-~~~~~~~~~ 144 (281)
T PRK11493 78 AMRELGV--NQDKHLVVYDEGNLFSAPRAWWMLRTF----------GVEKVSILAGGLAGWQRDDLLLEE-GAVELPEGE 144 (281)
T ss_pred HHHHcCC--CCCCEEEEECCCCCchHHHHHHHHHHh----------cCCcEEEcCCCHHHHHHcCCCccC-CCCCCCCCc
Confidence 011122 345568999984444577888999998 999999999999999875332222 122333445
Q ss_pred Cccccccccccccc-CCCCCCCCceeeechhhHHHH
Q psy1013 172 YKSRYLRSEDRAHN-AYPTLDYPEMYLLNGGYKQFY 206 (258)
Q Consensus 172 ~~ak~~re~dr~~n-~~p~l~ype~~~ld~g~~~~~ 206 (258)
|..+..++.....+ +...+..++..|||.--..-|
T Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~ 180 (281)
T PRK11493 145 FNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARF 180 (281)
T ss_pred ccccCCccceecHHHHHHhhcCCCcEEEeCCCccce
Confidence 55554444443332 333444556778888765554
No 37
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.70 E-value=9.3e-17 Score=146.58 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=99.0
Q ss_pred CccCHHHHHHHHhcccCCCCCCeEEEEec--------C-chhhccCCcCCceeCCCchhhhHH------------HHhhH
Q psy1013 33 KNISPDTLARLIRGEFNDVVDKYLIIDCR--------Y-PYEYKGGHIQGALNIYTREHLVKE------------FIESK 91 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR--------~-~~Ey~~gHIpGAvnip~~~~l~~~------------~~~~~ 91 (258)
..||++||.+++++ ++++||||| + ..+|..||||||+|+++ ..+... .+...
T Consensus 22 ~lvs~~~L~~~l~~------~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~-~~~~~~~~~~~~~lp~~~~~~~~ 94 (320)
T PLN02723 22 PVVSVDWLHANLRE------PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDL-DGISDRTTDLPHMLPSEEAFAAA 94 (320)
T ss_pred ceecHHHHHHHhcC------CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCH-HHhcCCCCCcCCCCCCHHHHHHH
Confidence 57999999999976 679999996 3 36899999999999997 443221 11111
Q ss_pred HHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCc-------
Q psy1013 92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGY------- 164 (258)
Q Consensus 92 ~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~------- 164 (258)
+ ..+.+ ++...||+||..+...+.+++|.|+.+ ||++|++|+||+.+|..+...+..+..
T Consensus 95 l-~~~Gi--~~~~~VVvY~~~g~~~a~r~~~~L~~~----------G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~ 161 (320)
T PLN02723 95 V-SALGI--ENKDGVVVYDGKGIFSAARVWWMFRVF----------GHEKVWVLDGGLPKWRASGYDVESSASGDAILKA 161 (320)
T ss_pred H-HHcCC--CCCCEEEEEcCCCcchHHHHHHHHHHc----------CCCceEEcCCCHHHHHHcCCCcccCCCccccccc
Confidence 1 11122 344568999985556678999999999 999999999999999986433222100
Q ss_pred -------------ccCCCCCCccccccccccccc-CCCCCCCCceeeechhhHH
Q psy1013 165 -------------LPMADPGYKSRYLRSEDRAHN-AYPTLDYPEMYLLNGGYKQ 204 (258)
Q Consensus 165 -------------~~~~~~~~~ak~~re~dr~~n-~~p~l~ype~~~ld~g~~~ 204 (258)
.......|..+...++..... +...+..+++.|||.--..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~ 215 (320)
T PLN02723 162 SAASEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKA 215 (320)
T ss_pred cccccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCcc
Confidence 011222344444444333332 4455556677888876443
No 38
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.70 E-value=1.2e-16 Score=145.44 Aligned_cols=107 Identities=22% Similarity=0.404 Sum_probs=85.6
Q ss_pred CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEE
Q psy1013 29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIF 108 (258)
Q Consensus 29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~ 108 (258)
......|+++++.+++.+ ++++|||||+++||+.||||||+|+|+ ..+.. +.. .+...+.. .+...||+
T Consensus 108 ~~~~~~is~~el~~~l~~------~~~vlIDVR~~~E~~~GhI~GAi~ip~-~~~~~-~~~-~l~~~~~~--~kdk~Ivv 176 (314)
T PRK00142 108 ENVGTYLKPKEVNELLDD------PDVVFIDMRNDYEYEIGHFENAIEPDI-ETFRE-FPP-WVEENLDP--LKDKKVVM 176 (314)
T ss_pred ccCCcccCHHHHHHHhcC------CCeEEEECCCHHHHhcCcCCCCEeCCH-HHhhh-hHH-HHHHhcCC--CCcCeEEE
Confidence 345678999999999986 679999999999999999999999999 65532 211 11111112 23445899
Q ss_pred ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcc
Q psy1013 109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQ 157 (258)
Q Consensus 109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~ 157 (258)
||. +|.|+..++.+|+.. ||++|+.|+||+.+|....+
T Consensus 177 yC~-~G~Rs~~aa~~L~~~----------Gf~~V~~L~GGi~~w~~~~~ 214 (314)
T PRK00142 177 YCT-GGIRCEKASAWMKHE----------GFKEVYQLEGGIITYGEDPE 214 (314)
T ss_pred ECC-CCcHHHHHHHHHHHc----------CCCcEEEecchHHHHHHhhc
Confidence 999 999999999999998 99999999999999998654
No 39
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.68 E-value=1.8e-16 Score=128.96 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=74.2
Q ss_pred HHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHH
Q psy1013 40 LARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPT 119 (258)
Q Consensus 40 L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~ 119 (258)
|.+++..+ .+++|||+|++.+|..||||||+|++. ..+...+.. ... ...||+||. ++.++..
T Consensus 2 l~~~l~~~-----~~~~ivDvR~~~e~~~gHIpgAi~~~~-~~l~~~l~~--------l~~--~~~vVv~c~-~g~~a~~ 64 (145)
T cd01535 2 LAAWLGEG-----GQTAVVDVTASANYVKRHIPGAWWVLR-AQLAQALEK--------LPA--AERYVLTCG-SSLLARF 64 (145)
T ss_pred hHHHHhCC-----CCeEEEECCCHHHHHcCCCCCceeCCH-HHHHHHHHh--------cCC--CCCEEEEeC-CChHHHH
Confidence 56667654 579999999999999999999999998 555433221 122 344888998 6889999
Q ss_pred HHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccc
Q psy1013 120 LSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLC 160 (258)
Q Consensus 120 ~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~ 160 (258)
+++.|+.. ||.+|++|+||+.+|......++
T Consensus 65 aa~~L~~~----------G~~~v~~L~GG~~aW~~~g~pl~ 95 (145)
T cd01535 65 AAADLAAL----------TVKPVFVLEGGTAAWIAAGLPVE 95 (145)
T ss_pred HHHHHHHc----------CCcCeEEecCcHHHHHHCCCCcc
Confidence 99999999 99999999999999999644433
No 40
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.67 E-value=4.4e-16 Score=137.90 Aligned_cols=110 Identities=17% Similarity=0.350 Sum_probs=82.9
Q ss_pred CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC 110 (258)
Q Consensus 31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc 110 (258)
....|+++++.+++++..++..++.+|||||+++||+.||||||+|+|. +++.. +. ..+....... +...||+||
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl-~~f~~-~~-~~l~~~~~~~--kdk~IvvyC 182 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRI-DKFTE-FP-EALAAHRADL--AGKTVVSFC 182 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCCh-hHhhh-hH-HHHHhhhhhc--CCCeEEEEC
Confidence 4578999999999876311111358999999999999999999999999 66532 11 1111010011 334588999
Q ss_pred CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013 111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH 156 (258)
Q Consensus 111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~ 156 (258)
. +|.|+..++..|+.. ||++|+.|+||+.+|.++.
T Consensus 183 ~-~G~Rs~~Aa~~L~~~----------Gf~~V~~L~GGi~~w~~~~ 217 (257)
T PRK05320 183 T-GGIRCEKAAIHMQEV----------GIDNVYQLEGGILKYFEEV 217 (257)
T ss_pred C-CCHHHHHHHHHHHHc----------CCcceEEeccCHHHHHHhC
Confidence 9 999999999999999 9999999999999999853
No 41
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.3e-16 Score=140.87 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=113.6
Q ss_pred CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCc--hhhccCCcCCceeCCCchhhhHH------HHhhHHH-----hhc
Q psy1013 30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYP--YEYKGGHIQGALNIYTREHLVKE------FIESKVH-----AQS 96 (258)
Q Consensus 30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~--~Ey~~gHIpGAvnip~~~~l~~~------~~~~~~~-----~~~ 96 (258)
.....||++||.++|.+. .-...+..|++++.. .+|..||||||+++++ +..... +++.... ..+
T Consensus 8 ~~~~lVs~~wl~~~l~~~-~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~-~~~~~~~~~~~~~lp~~e~fa~~~~~~ 85 (285)
T COG2897 8 SSEFLVSPDWLAENLDDP-AVVIVDARIILPDPDDAEEYLEGHIPGAVFFDW-EADLSDPVPLPHMLPSPEQFAKLLGEL 85 (285)
T ss_pred CcceEEcHHHHHhhcccc-ccccCceEEEeCCcchHHHHHhccCCCCEecCH-HHhhcCCCCCCCCCCCHHHHHHHHHHc
Confidence 345579999999999862 001135666666665 7899999999999998 443211 1111110 112
Q ss_pred cccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCcccCCCCCCcccc
Q psy1013 97 NATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRY 176 (258)
Q Consensus 97 ~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~~~~~~~~ak~ 176 (258)
.+ +++.+||+|++.++..+++++|.|+.+ |+++|+||+||+.+|.++.-.+.. +........|.+++
T Consensus 86 GI--~~d~tVVvYdd~~~~~A~ra~W~l~~~----------Gh~~V~iLdGG~~~W~~~g~p~~~-~~~~~~~~~f~~~~ 152 (285)
T COG2897 86 GI--RNDDTVVVYDDGGGFFAARAWWLLRYL----------GHENVRILDGGLPAWKAAGLPLET-EPPEPPPTTFSAKY 152 (285)
T ss_pred CC--CCCCEEEEECCCCCeehHHHHHHHHHc----------CCCceEEecCCHHHHHHcCCCccC-CCCCCCCccccccC
Confidence 22 456679999998888999999999999 999999999999999997544443 23444555677777
Q ss_pred ccccccccc-CCCCCCCCceeeechhhHHHH
Q psy1013 177 LRSEDRAHN-AYPTLDYPEMYLLNGGYKQFY 206 (258)
Q Consensus 177 ~re~dr~~n-~~p~l~ype~~~ld~g~~~~~ 206 (258)
..+.....+ +.-.++.+.+.|+|+--..-|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf 183 (285)
T COG2897 153 NVKAVVDATLVADALEVPAVLLIDARSPERF 183 (285)
T ss_pred CccccCCHHHHHHHhcCCCeEEEecCCHHHh
Confidence 666666644 666677788889998765443
No 42
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.65 E-value=5.7e-16 Score=118.57 Aligned_cols=81 Identities=26% Similarity=0.367 Sum_probs=65.7
Q ss_pred CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013 53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN 132 (258)
Q Consensus 53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n 132 (258)
....+||+|++.||..||||||+|+|. .++.... .. ...++...||+||. +|.+|..++..|+..
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~-~~l~~~l-~~-------~~~~~~~~vvlyC~-~G~rS~~aa~~L~~~----- 81 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPL-KEIKEHI-AT-------AVPDKNDTVKLYCN-AGRQSGMAKDILLDM----- 81 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCH-HHHHHHH-HH-------hCCCCCCeEEEEeC-CCHHHHHHHHHHHHc-----
Confidence 456799999999999999999999999 6554322 11 11234456889999 889999999999999
Q ss_pred cCCCCCCCCeEEecchHHHHHH
Q psy1013 133 AYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 133 ~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
||++|+++ ||+.+|..
T Consensus 82 -----G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 82 -----GYTHAENA-GGIKDIAM 97 (101)
T ss_pred -----CCCeEEec-CCHHHhhh
Confidence 99999986 99999975
No 43
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.64 E-value=7.9e-16 Score=143.37 Aligned_cols=97 Identities=26% Similarity=0.394 Sum_probs=79.9
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE 111 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~ 111 (258)
++.|+++++.+++++ +.+|||+|++.||..||||||+|+|. ..+... ... .. .++...||+||.
T Consensus 2 v~~is~~el~~~l~~-------~~~ivDvR~~~e~~~ghIpgAi~ip~-~~l~~~-~~~-----~~--~~~~~~IvvyC~ 65 (376)
T PRK08762 2 IREISPAEARARAAQ-------GAVLIDVREAHERASGQAEGALRIPR-GFLELR-IET-----HL--PDRDREIVLICA 65 (376)
T ss_pred CceeCHHHHHHHHhC-------CCEEEECCCHHHHhCCcCCCCEECCH-HHHHHH-Hhh-----hc--CCCCCeEEEEcC
Confidence 567999999999974 47899999999999999999999999 554322 211 11 134455899999
Q ss_pred CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
++.+|..+++.|+.. ||++|++|+||+.+|...
T Consensus 66 -~G~rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~ 98 (376)
T PRK08762 66 -SGTRSAHAAATLREL----------GYTRVASVAGGFSAWKDA 98 (376)
T ss_pred -CCcHHHHHHHHHHHc----------CCCceEeecCcHHHHHhc
Confidence 888999999999999 999999999999999875
No 44
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.63 E-value=8e-16 Score=118.34 Aligned_cols=81 Identities=26% Similarity=0.383 Sum_probs=64.8
Q ss_pred CCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcc
Q psy1013 53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHN 132 (258)
Q Consensus 53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n 132 (258)
.+-+|||+|++.||..||||||+|+|. .++... +. . ...++...||+||. ++.+|..++..|...
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAiniP~-~~l~~~-l~-----~--l~~~~~~~IVlyC~-~G~rS~~aa~~L~~~----- 83 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAINIPL-KEVKER-IA-----T--AVPDKNDTVKLYCN-AGRQSGQAKEILSEM----- 83 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccEECCH-HHHHHH-HH-----h--cCCCCCCeEEEEeC-CChHHHHHHHHHHHc-----
Confidence 345699999999999999999999999 655432 21 1 12234455899998 889999999999988
Q ss_pred cCCCCCCCCeEEecchHHHHHH
Q psy1013 133 AYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 133 ~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
||++|++ .||+.+|.-
T Consensus 84 -----G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 84 -----GYTHAEN-AGGLKDIAM 99 (104)
T ss_pred -----CCCeEEe-cCCHHHHhh
Confidence 9999987 699999964
No 45
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.62 E-value=2e-15 Score=141.34 Aligned_cols=99 Identities=22% Similarity=0.371 Sum_probs=81.9
Q ss_pred CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHH-HHhhHHHhhccccCCCceEEEEe
Q psy1013 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE-FIESKVHAQSNATCDKRRVLIFH 109 (258)
Q Consensus 31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~-~~~~~~~~~~~~~~~~~~~vV~y 109 (258)
....|+++++.++++++ .+++|||+|++.||..||||||+|+|. ..+... ... ..+ +...||+|
T Consensus 285 ~~~~Is~~el~~~l~~~-----~~~~lIDvR~~~ef~~ghIpGAinip~-~~l~~~~~~~-------~l~--~d~~iVvy 349 (392)
T PRK07878 285 AGSTITPRELKEWLDSG-----KKIALIDVREPVEWDIVHIPGAQLIPK-SEILSGEALA-------KLP--QDRTIVLY 349 (392)
T ss_pred CCCccCHHHHHHHHhCC-----CCeEEEECCCHHHHhcCCCCCCEEcCh-HHhcchhHHh-------hCC--CCCcEEEE
Confidence 44679999999999864 578999999999999999999999999 555331 111 122 33458899
Q ss_pred cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
|. ++.||..+++.|++. ||++|++|+||+.+|...
T Consensus 350 C~-~G~rS~~aa~~L~~~----------G~~~V~~L~GG~~~W~~~ 384 (392)
T PRK07878 350 CK-TGVRSAEALAALKKA----------GFSDAVHLQGGVVAWAKQ 384 (392)
T ss_pred cC-CChHHHHHHHHHHHc----------CCCcEEEecCcHHHHHHh
Confidence 99 889999999999999 999999999999999874
No 46
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.58 E-value=9.2e-15 Score=134.46 Aligned_cols=102 Identities=21% Similarity=0.306 Sum_probs=73.4
Q ss_pred CHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHH-------------------------Hhh
Q psy1013 36 SPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEF-------------------------IES 90 (258)
Q Consensus 36 s~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~-------------------------~~~ 90 (258)
+..++.+++. ++.+|||||+|.||..||||||+|+|.. +..++. +..
T Consensus 4 ~~~~~~~~~~-------~~~~lIDVRsp~Ef~~ghIpgAiniPl~-~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~ 75 (345)
T PRK11784 4 DAQDFRALFL-------NDTPLIDVRSPIEFAEGHIPGAINLPLL-NDEERAEVGTCYKQQGQFAAIALGHALVAGNIAA 75 (345)
T ss_pred cHHHHHHHHh-------CCCEEEECCCHHHHhcCCCCCeeeCCCC-ChhHHHhhchhhcccCHHHHHHhhhhhcchhHHH
Confidence 4566777665 4689999999999999999999999993 321110 000
Q ss_pred HHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013 91 KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH 156 (258)
Q Consensus 91 ~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~ 156 (258)
.....+....++...||+||..+|.||..++++|+.. || +|++|+|||++|....
T Consensus 76 ~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~----------G~-~v~~L~GG~~awr~~~ 130 (345)
T PRK11784 76 HREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEA----------GI-DVPRLEGGYKAYRRFV 130 (345)
T ss_pred HHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHc----------CC-CcEEEcCCHHHHHHhh
Confidence 0000011111244558999976889999999999999 99 6999999999998753
No 47
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.57 E-value=7.8e-15 Score=112.27 Aligned_cols=83 Identities=25% Similarity=0.435 Sum_probs=70.2
Q ss_pred CCeEEEEecCchhhccCCcCC-ceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhc
Q psy1013 53 DKYLIIDCRYPYEYKGGHIQG-ALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAH 131 (258)
Q Consensus 53 ~~~~IIDvR~~~Ey~~gHIpG-Avnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~ 131 (258)
+..+|||||++.||+.+|||| |+|+|. .++...... ...++...+|+||. +|.||..++..|+..
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~-~~~~~~~~~--------~~~~~~~~ivv~C~-~G~rS~~aa~~L~~~---- 84 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPL-SELKAAENL--------LELPDDDPIVVYCA-SGVRSAAAAAALKLA---- 84 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeec-ccchhhhcc--------cccCCCCeEEEEeC-CCCChHHHHHHHHHc----
Confidence 689999999999999999999 999999 665443221 00234556889999 999999999999999
Q ss_pred ccCCCCCCCCeEEecchHHHHHHh
Q psy1013 132 NAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 132 n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
||.+++.|.||+.+|...
T Consensus 85 ------G~~~~~~l~gG~~~w~~~ 102 (110)
T COG0607 85 ------GFTNVYNLDGGIDAWKGA 102 (110)
T ss_pred ------CCccccccCCcHHHHHhc
Confidence 999999999999999884
No 48
>PRK07411 hypothetical protein; Validated
Probab=99.57 E-value=1.2e-14 Score=136.08 Aligned_cols=104 Identities=20% Similarity=0.333 Sum_probs=80.3
Q ss_pred CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEe
Q psy1013 30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFH 109 (258)
Q Consensus 30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~y 109 (258)
..++.|+++++.++++.+ .++.+|||+|++.||..||||||+|+|+ .++........+. ... +...||+|
T Consensus 279 ~~~~~Is~~el~~~l~~~----~~~~vlIDVR~~~E~~~ghIpGAiniP~-~~l~~~~~~~~l~---~l~--~d~~IVvy 348 (390)
T PRK07411 279 AEIPEMTVTELKALLDSG----ADDFVLIDVRNPNEYEIARIPGSVLVPL-PDIENGPGVEKVK---ELL--NGHRLIAH 348 (390)
T ss_pred cccCccCHHHHHHHHhCC----CCCeEEEECCCHHHhccCcCCCCEEccH-HHhhcccchHHHh---hcC--CCCeEEEE
Confidence 456789999999999763 0268999999999999999999999999 5553311000100 112 33458999
Q ss_pred cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
|. +|.||..+++.|+.. ||++ +.|+||+.+|..+
T Consensus 349 C~-~G~RS~~aa~~L~~~----------G~~~-~~l~GG~~~W~~~ 382 (390)
T PRK07411 349 CK-MGGRSAKALGILKEA----------GIEG-TNVKGGITAWSRE 382 (390)
T ss_pred CC-CCHHHHHHHHHHHHc----------CCCe-EEecchHHHHHHh
Confidence 98 899999999999999 9974 6899999999874
No 49
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.56 E-value=6.7e-15 Score=134.36 Aligned_cols=101 Identities=15% Similarity=0.286 Sum_probs=76.8
Q ss_pred ccCHHHHHHHHhcccCCCCCCeEEEEecCchhh-----------ccCCcCCceeCCCchhhhHH---H-----HhhHHHh
Q psy1013 34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-----------KGGHIQGALNIYTREHLVKE---F-----IESKVHA 94 (258)
Q Consensus 34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey-----------~~gHIpGAvnip~~~~l~~~---~-----~~~~~~~ 94 (258)
.++.+++.+.+.+ ++++|||+|++.|| ..||||||+|+|+ ..+... + +...+ .
T Consensus 191 ~~~~~~v~~~~~~------~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~-~~~~~~~~~~~~~~el~~~~-~ 262 (320)
T PLN02723 191 VWTLEQVKKNIED------KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPF-PQMLDSSQTLLPAEELKKRF-E 262 (320)
T ss_pred eecHHHHHHhhcC------CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCH-HHhcCCCCCCCCHHHHHHHH-H
Confidence 4789999998876 56889999999888 4699999999998 444211 1 11111 1
Q ss_pred hccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 95 QSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 95 ~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
...+. +...||+||+ +|.++..+++.|+.+ ||++|++++||+.+|...
T Consensus 263 ~~gi~--~~~~iv~yC~-sG~~A~~~~~~L~~~----------G~~~v~~YdGs~~eW~~~ 310 (320)
T PLN02723 263 QEGIS--LDSPIVASCG-TGVTACILALGLHRL----------GKTDVPVYDGSWTEWGAL 310 (320)
T ss_pred hcCCC--CCCCEEEECC-cHHHHHHHHHHHHHc----------CCCCeeEeCCCHHHHhcC
Confidence 11233 3344889999 789999999999988 999999999999999864
No 50
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.55 E-value=1.2e-14 Score=131.84 Aligned_cols=91 Identities=25% Similarity=0.352 Sum_probs=65.5
Q ss_pred CeEEEEecCchhhccCCcCCceeCCCchhhhHH---------------------HHhhHHHh---hccccCCCceEEEEe
Q psy1013 54 KYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE---------------------FIESKVHA---QSNATCDKRRVLIFH 109 (258)
Q Consensus 54 ~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~---------------------~~~~~~~~---~~~~~~~~~~~vV~y 109 (258)
+.+|||||+|.||..||||||+|+|. .+..++ +....+.. .+....+++..||+|
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl-~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvy 80 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPL-LNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLY 80 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEeccc-ccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 35899999999999999999999999 322110 00001110 111112223238899
Q ss_pred cCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhc
Q psy1013 110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH 156 (258)
Q Consensus 110 c~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~ 156 (258)
|..+|.||..++++|+.+ || +|++|+||+.+|....
T Consensus 81 C~~gG~RS~~aa~~L~~~----------G~-~v~~L~GG~~aw~~~~ 116 (311)
T TIGR03167 81 CWRGGMRSGSLAWLLAQI----------GF-RVPRLEGGYKAYRRFV 116 (311)
T ss_pred ECCCChHHHHHHHHHHHc----------CC-CEEEecChHHHHHHhh
Confidence 976889999999999999 99 6999999999998864
No 51
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.53 E-value=1.9e-14 Score=133.18 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=75.9
Q ss_pred CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEec
Q psy1013 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHC 110 (258)
Q Consensus 31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc 110 (258)
....++++++.++. ++.+|||+|++.||..||||||+|+|+ .++...... ... ++...||+||
T Consensus 259 ~~~~i~~~~~~~~~--------~~~~IIDVR~~~ef~~ghIpgAinip~-~~l~~~~~~------~~~--~~~~~IvvyC 321 (355)
T PRK05597 259 FGEVLDVPRVSALP--------DGVTLIDVREPSEFAAYSIPGAHNVPL-SAIREGANP------PSV--SAGDEVVVYC 321 (355)
T ss_pred cccccCHHHHHhcc--------CCCEEEECCCHHHHccCcCCCCEEeCH-HHhhhcccc------ccC--CCCCeEEEEc
Confidence 34578888887543 347899999999999999999999999 655433211 111 2334588999
Q ss_pred CCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013 111 EYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 111 ~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
. ++.++..+++.|+.. ||++|++|+||+.+|.+
T Consensus 322 ~-~G~rS~~Aa~~L~~~----------G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 322 A-AGVRSAQAVAILERA----------GYTGMSSLDGGIEGWLD 354 (355)
T ss_pred C-CCHHHHHHHHHHHHc----------CCCCEEEecCcHHHHhh
Confidence 8 789999999999999 99999999999999975
No 52
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.51 E-value=4.6e-14 Score=138.61 Aligned_cols=102 Identities=22% Similarity=0.339 Sum_probs=78.3
Q ss_pred CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhc--------cCCcCCceeCCCchhhhH--------HHHhhHHHhhc
Q psy1013 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK--------GGHIQGALNIYTREHLVK--------EFIESKVHAQS 96 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~--------~gHIpGAvnip~~~~l~~--------~~~~~~~~~~~ 96 (258)
..++.+++.+.+++ ++++|||+|++.||. .||||||+|+|+ ..+.. +.+...+ ...
T Consensus 147 ~~v~~e~v~~~l~~------~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~-~~~~~~~~~lk~~~el~~~~-~~~ 218 (610)
T PRK09629 147 PTATREYLQSRLGA------ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEW-TAGMDKARNLRIRQDMPEIL-RDL 218 (610)
T ss_pred ccccHHHHHHhhCC------CCcEEEECCCccccCCcccccccCCCCCCCeecCH-HHhcCCCCCCCCHHHHHHHH-HHc
Confidence 36899999999876 678999999999995 699999999998 43321 1111111 112
Q ss_pred cccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 97 NATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 97 ~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
.+. +...||+||+ ++.+|..+++.|+.+ ||++|++++||+.+|...
T Consensus 219 Gi~--~~~~VVvYC~-sG~rAa~~~~~L~~l----------G~~~V~~YdGsw~eW~~~ 264 (610)
T PRK09629 219 GIT--PDKEVITHCQ-THHRSGFTYLVAKAL----------GYPRVKAYAGSWGEWGNH 264 (610)
T ss_pred CCC--CCCCEEEECC-CChHHHHHHHHHHHc----------CCCCcEEeCCCHHHHhCC
Confidence 233 3344899999 889999999999988 999999999999999874
No 53
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.50 E-value=9.4e-14 Score=124.15 Aligned_cols=106 Identities=25% Similarity=0.398 Sum_probs=81.3
Q ss_pred CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc----------CCcCCceeCCCchhhhHH--HHh-----hHH
Q psy1013 30 HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG----------GHIQGALNIYTREHLVKE--FIE-----SKV 92 (258)
Q Consensus 30 ~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~----------gHIpGAvnip~~~~l~~~--~~~-----~~~ 92 (258)
+....++.+.++..++. ...+|||+|++.+|.+ ||||||+|+|+ .++... ++. ..+
T Consensus 153 ~~~~~~~~~~~~~~~~~------~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw-~~~~~~~~~~~~~~~~~~l 225 (285)
T COG2897 153 NVKAVVDATLVADALEV------PAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPW-TDLVDDGGLFKSPEEIARL 225 (285)
T ss_pred CccccCCHHHHHHHhcC------CCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCH-HHHhcCCCccCcHHHHHHH
Confidence 34456777888888877 6788999999999999 99999999999 665441 111 111
Q ss_pred HhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 93 HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 93 ~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
.....+..+++ ||+||+ +|.+|......|+.+ |++++.+++|++.+|-+.
T Consensus 226 ~~~~gi~~~~~--vI~yCg-sG~~As~~~~al~~l----------g~~~~~lYdGSWsEWg~~ 275 (285)
T COG2897 226 YADAGIDPDKE--VIVYCG-SGVRASVTWLALAEL----------GGPNNRLYDGSWSEWGSD 275 (285)
T ss_pred HHhcCCCCCCC--EEEEcC-CchHHHHHHHHHHHh----------CCCCcccccChHHHhhcC
Confidence 11223444444 789999 999999999999999 888889999999999873
No 54
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.48 E-value=6.1e-14 Score=125.75 Aligned_cols=100 Identities=25% Similarity=0.385 Sum_probs=72.7
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhc-----------cCCcCCceeCCCchhhhHH--HHh-hHHHh---hcc
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK-----------GGHIQGALNIYTREHLVKE--FIE-SKVHA---QSN 97 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~-----------~gHIpGAvnip~~~~l~~~--~~~-~~~~~---~~~ 97 (258)
++.+++...+.+ ++++|||+|++.||. .||||||+|+|+ ..+... +.. ..+.. ...
T Consensus 155 ~~~~~v~~~~~~------~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~-~~~~~~~~~~~~~~l~~~~~~~g 227 (281)
T PRK11493 155 VRLTDVLLASHE------KTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPW-TELVREGELKTTDELDAIFFGRG 227 (281)
T ss_pred ecHHHHHHhhcC------CCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCH-HHhcCCCCcCCHHHHHHHHHhcC
Confidence 455666655554 568999999999996 599999999998 554321 100 11110 112
Q ss_pred ccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013 98 ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 98 ~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
+..+ ..||+||+ +|.+|..++..|+.+ ||++|++++||+.+|..
T Consensus 228 ~~~~--~~ii~yC~-~G~~A~~~~~~l~~~----------G~~~v~~y~Gs~~eW~~ 271 (281)
T PRK11493 228 VSFD--RPIIASCG-SGVTAAVVVLALATL----------DVPNVKLYDGAWSEWGA 271 (281)
T ss_pred CCCC--CCEEEECC-cHHHHHHHHHHHHHc----------CCCCceeeCCCHHHHcc
Confidence 2233 34888999 899999999999988 99999999999999986
No 55
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.42 E-value=3e-13 Score=125.75 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=73.9
Q ss_pred CccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcC---CceeCCCchhhhHHH--HhhHHHhhccccCCCceEEE
Q psy1013 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQ---GALNIYTREHLVKEF--IESKVHAQSNATCDKRRVLI 107 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIp---GAvnip~~~~l~~~~--~~~~~~~~~~~~~~~~~~vV 107 (258)
..|+++++.+++++ ++.+|||||++.||..|||| ||+|+|. +++.... .. .+... ++. .||
T Consensus 271 ~~~~~~el~~~l~~------~~~~lIDVR~~~E~~~ghI~~~~gAinIPl-~~l~~~~~~~~-----~l~~~-~~~-~Iv 336 (370)
T PRK05600 271 ARTDTTSLIDATLN------GSATLLDVREPHEVLLKDLPEGGASLKLPL-SAITDDADILH-----ALSPI-DGD-NVV 336 (370)
T ss_pred cccCHHHHHHHHhc------CCeEEEECCCHHHhhhccCCCCCccEeCcH-HHhhcchhhhh-----hcccc-CCC-cEE
Confidence 36899999999987 45789999999999999998 6999999 6664221 11 01111 222 589
Q ss_pred EecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCC-eEEecchHH
Q psy1013 108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPE-MYLLNGGYK 150 (258)
Q Consensus 108 ~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~-V~iL~GG~~ 150 (258)
+||. +|.||..++..|+.. ||.+ |++|+||+.
T Consensus 337 v~C~-sG~RS~~Aa~~L~~~----------G~~~~v~~l~GG~~ 369 (370)
T PRK05600 337 VYCA-SGIRSADFIEKYSHL----------GHELTLHNLPGGVN 369 (370)
T ss_pred EECC-CChhHHHHHHHHHHc----------CCCCceEEeccccC
Confidence 9999 999999999999999 9986 999999985
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=109.72 Aligned_cols=102 Identities=25% Similarity=0.441 Sum_probs=83.9
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE 111 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~ 111 (258)
=.+|+|+++.+++.+ +++++||+|..+||+-||..|||+.+. .++. +|. ....+......++ .||.||-
T Consensus 112 G~yl~p~~wn~~l~D------~~~vviDtRN~YE~~iG~F~gAv~p~~-~tFr-efP-~~v~~~~~~~~~K--kVvmyCT 180 (308)
T COG1054 112 GTYLSPKDWNELLSD------PDVVVIDTRNDYEVAIGHFEGAVEPDI-ETFR-EFP-AWVEENLDLLKDK--KVVMYCT 180 (308)
T ss_pred cCccCHHHHHHHhcC------CCeEEEEcCcceeEeeeeecCccCCCh-hhhh-hhH-HHHHHHHHhccCC--cEEEEcC
Confidence 468999999999998 789999999999999999999999999 6653 332 2222222223344 4889999
Q ss_pred CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
+|.|...+..+|+.. ||++||-|+||+-.+.++
T Consensus 181 -GGIRCEKas~~m~~~----------GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 181 -GGIRCEKASAWMKEN----------GFKEVYHLEGGILKYLED 213 (308)
T ss_pred -CceeehhhHHHHHHh----------cchhhhcccchHHHHhhh
Confidence 999999999999999 999999999999999875
No 57
>KOG1529|consensus
Probab=99.12 E-value=3.9e-10 Score=99.66 Aligned_cols=155 Identities=14% Similarity=0.165 Sum_probs=101.7
Q ss_pred CccCHHHHHHHHhcccCCCCCCeEEEEecC---------chhhccCCcCCceeCCCchhhh------HHHHhhHHH--hh
Q psy1013 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRY---------PYEYKGGHIQGALNIYTREHLV------KEFIESKVH--AQ 95 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~---------~~Ey~~gHIpGAvnip~~~~l~------~~~~~~~~~--~~ 95 (258)
..++++|+.+++.+ ..++|||+.- ..||...|||||+++.. +... ...++.... ..
T Consensus 5 ~iv~~~~v~~~~~~------~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdl-d~~~~~s~~~~~~lp~~e~Fa~y 77 (286)
T KOG1529|consen 5 SIVSVKWVMENLGN------HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDL-DIISYPSSPYRHMLPTAEHFAEY 77 (286)
T ss_pred cccChHHHHHhCcC------CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeec-cccccCCCcccccCccHHHHHHH
Confidence 35889999999987 6799999972 56788999999999987 4431 111111111 00
Q ss_pred -ccccCCCceEEEEecC--CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhccccccCCccc-C-CCC
Q psy1013 96 -SNATCDKRRVLIFHCE--YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLP-M-ADP 170 (258)
Q Consensus 96 -~~~~~~~~~~vV~yc~--~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~~~~~~-~-~~~ 170 (258)
..+.-++...+|+|+. .+...|++++|+++.+ ||..|.+|+||+.+|++...+...+ .+. + ..-
T Consensus 78 ~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~f----------Gh~~VslL~GG~~~Wk~~g~~~~s~-~~~~p~~~~ 146 (286)
T KOG1529|consen 78 ASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVF----------GHTKVSLLNGGFRAWKAAGGPVDSS-KVETPYSPI 146 (286)
T ss_pred HHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHh----------CccEEEEecCcHHHHHHcCCccccc-cccCCCCCc
Confidence 0122245567899987 4556799999999999 9999999999999999864333321 221 1 233
Q ss_pred CCcccccccccccccC--CCCCCCCceeeechh-hHHH
Q psy1013 171 GYKSRYLRSEDRAHNA--YPTLDYPEMYLLNGG-YKQF 205 (258)
Q Consensus 171 ~~~ak~~re~dr~~n~--~p~l~ype~~~ld~g-~~~~ 205 (258)
.+.+.+..++...... +..+...++..+|+- +-+|
T Consensus 147 ~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF 184 (286)
T KOG1529|consen 147 VFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRF 184 (286)
T ss_pred cchhhcchHHHHHHhhccccccccccceeeeccccccc
Confidence 4445666655555432 222455677778776 4455
No 58
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.97 E-value=1.2e-09 Score=105.17 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=59.1
Q ss_pred CCeEEEEecCchhhccCCcCC----ceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecCCCCCcHHHHHHHHHHhH
Q psy1013 53 DKYLIIDCRYPYEYKGGHIQG----ALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128 (258)
Q Consensus 53 ~~~~IIDvR~~~Ey~~gHIpG----Avnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~ 128 (258)
++.+|||+|++.||+.||||| |+|+|. .++...+.. .+.+ ..+|+||. +|.||..+|..|+..
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~-~~l~~~~~~--------l~~~--~~iivyC~-~G~rS~~aa~~L~~~- 472 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPF-YKLSTQFGD--------LDQS--KTYLLYCD-RGVMSRLQALYLREQ- 472 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCH-HHHHHHHhh--------cCCC--CeEEEECC-CCHHHHHHHHHHHHc-
Confidence 568899999999999999999 999999 666443211 2233 35899999 899999999999999
Q ss_pred HhcccCCCCCCCCeEEec
Q psy1013 129 RAHNAYPTLDYPEMYLLN 146 (258)
Q Consensus 129 r~~n~yp~lGy~~V~iL~ 146 (258)
||.+|+++.
T Consensus 473 ---------G~~nv~~y~ 481 (482)
T PRK01269 473 ---------GFSNVKVYR 481 (482)
T ss_pred ---------CCccEEecC
Confidence 999998875
No 59
>KOG2017|consensus
Probab=98.77 E-value=1.4e-08 Score=91.89 Aligned_cols=104 Identities=22% Similarity=0.254 Sum_probs=77.3
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEEecC
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCE 111 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~ 111 (258)
-..||..++++++++. +..++||+|++-||+..|+|+|+|||. .++..... +... .......++ |++.|.
T Consensus 316 ~~Rvsv~d~k~il~~~-----~~h~llDvRp~~~~eI~~lP~avNIPL-~~l~~~~~-~~~~-~~~~~~~~~--I~ViCr 385 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSG-----AKHLLLDVRPSHEYEICRLPEAVNIPL-KELRSRSG-KKLQ-GDLNTESKD--IFVICR 385 (427)
T ss_pred hhcccHHHHHHHHhcC-----CCeEEEeccCcceEEEEecccccccch-hhhhhhhh-hhhc-ccccccCCC--EEEEeC
Confidence 4579999999999986 789999999999999999999999999 55544322 1111 001112333 566677
Q ss_pred CCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHh
Q psy1013 112 YSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155 (258)
Q Consensus 112 ~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~ 155 (258)
.|..|.++++.|++.. +.-.|.-+-||+.+|...
T Consensus 386 -rGNdSQ~Av~~Lre~~---------~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 386 -RGNDSQRAVRILREKF---------PDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred -CCCchHHHHHHHHhhC---------CchhhhhhhhHHHHHHHh
Confidence 7888999999999772 333566788999999874
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.44 E-value=6.4e-08 Score=86.66 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=10.9
Q ss_pred ccccCCcccCCCCCCcccccccccc
Q psy1013 158 DLCEGGYLPMADPGYKSRYLRSEDR 182 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~~ak~~re~dr 182 (258)
.+|| +...++|. .+.++|+.||
T Consensus 309 fHCE--fSshRaP~-LA~HlRN~DR 330 (427)
T COG5105 309 FHCE--FSSHRAPR-LAQHLRNMDR 330 (427)
T ss_pred EEee--cccccchh-HHHHHhhhhh
Confidence 3677 55555554 2344444443
No 61
>KOG1529|consensus
Probab=98.37 E-value=1.1e-06 Score=77.86 Aligned_cols=114 Identities=20% Similarity=0.390 Sum_probs=71.5
Q ss_pred CccCHHHHHHHHhcccC-CCCCCeEEEEecCchhhc-----------cCCcCCceeCCCchhhhH-H-HHh--hHHHhhc
Q psy1013 33 KNISPDTLARLIRGEFN-DVVDKYLIIDCRYPYEYK-----------GGHIQGALNIYTREHLVK-E-FIE--SKVHAQS 96 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~-~~~~~~~IIDvR~~~Ey~-----------~gHIpGAvnip~~~~l~~-~-~~~--~~~~~~~ 96 (258)
..++...+..+.+-.++ .+..++.+||.|...+|. +||||||+|+|. .++.. . +.. ..+....
T Consensus 150 ~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~-~~~~~~~g~~k~~edl~~~f 228 (286)
T KOG1529|consen 150 ASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPF-DEVLDPDGFIKPAEDLKHLF 228 (286)
T ss_pred hhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCCh-HHhcccccccCCHHHHHHHH
Confidence 34555545444443333 344679999999877774 589999999999 44421 1 111 1111111
Q ss_pred cccC-CCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccc
Q psy1013 97 NATC-DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDL 159 (258)
Q Consensus 97 ~~~~-~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~ 159 (258)
.... .....+|+-|+ .|..+...+-.|... | ++|.+++|++..|....|++
T Consensus 229 ~~~~l~~~~p~~~sC~-~Gisa~~i~~al~r~----------g-~~~~lYdGS~~Ew~~~~Pe~ 280 (286)
T KOG1529|consen 229 AQKGLKLSKPVIVSCG-TGISASIIALALERS----------G-PDAKLYDGSWTEWALRAPEL 280 (286)
T ss_pred HhcCcccCCCEEEeec-cchhHHHHHHHHHhc----------C-CCcceecccHHHHhhcCchh
Confidence 1111 12334778898 777777777777777 8 89999999999998654443
No 62
>KOG3772|consensus
Probab=98.36 E-value=8.5e-08 Score=86.54 Aligned_cols=78 Identities=32% Similarity=0.670 Sum_probs=59.3
Q ss_pred ccccCCcccCCCCCCccccccccccccc--CCCCCCCCceeeechhhHHHHhhhccCCCCCcccCCCcccH--HHHHHHH
Q psy1013 158 DLCEGGYLPMADPGYKSRYLRSEDRAHN--AYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYK--SDFQTFR 233 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~~ak~~re~dr~~n--~~p~l~ype~~~ld~g~~~~~~~~~~~c~~~y~~m~~~~~~--~~~~~~~ 233 (258)
.+|+ +...+||+ .++++|+.||+.| .||.|+|||+|||+|||++||..|+ ..-+|..- .....|+
T Consensus 227 FhCe--fSq~RGP~-mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~--------~LCeP~~Yv~M~h~~~~ 295 (325)
T KOG3772|consen 227 FHCE--FSQERGPK-MARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYP--------NLCEPQSYVPMHHEAFK 295 (325)
T ss_pred EEee--eccccCHH-HHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcc--------cccCccceecccchhHH
Confidence 5888 88888887 6788998888865 9999999999999999999999987 34444422 1234667
Q ss_pred hhccccccccccc
Q psy1013 234 SKSKTWSCDYKAN 246 (258)
Q Consensus 234 ~~~~~~~~~~~~~ 246 (258)
..+|......+.-
T Consensus 296 ~~~k~~~~~~~~~ 308 (325)
T KOG3772|consen 296 DELKRFRTKSRSW 308 (325)
T ss_pred HHHhhhccccccc
Confidence 7777766665543
No 63
>KOG1717|consensus
Probab=98.02 E-value=2.7e-06 Score=74.73 Aligned_cols=114 Identities=21% Similarity=0.291 Sum_probs=72.3
Q ss_pred ccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhcc----------ccCCCc
Q psy1013 34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSN----------ATCDKR 103 (258)
Q Consensus 34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~----------~~~~~~ 103 (258)
.+|++||...+.. .+++++|||+ +..||.+|+|+-.+.-+..+...+.+..... ....+.
T Consensus 5 ~~s~~wlnr~l~~------~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~ 74 (343)
T KOG1717|consen 5 SKSVAWLNRQLEL------GNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGT 74 (343)
T ss_pred HHHHHHHHhhccc------CceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCc
Confidence 4788999998887 6799999999 6789999999998544444443332221111 111233
Q ss_pred eEEEEecCCCCCc--HHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHHhcccccc
Q psy1013 104 RVLIFHCEYSAER--GPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE 161 (258)
Q Consensus 104 ~~vV~yc~~s~~r--s~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~~~~~~~~ 161 (258)
..+|.|++.+.+. -+.++..|..... +....|+ .++.|.|||..|..+++++|+
T Consensus 75 v~vilyD~~~~e~e~~~~~~s~Lg~ll~---kl~~~g~-~a~yL~ggF~~fq~e~~~~ce 130 (343)
T KOG1717|consen 75 VTVILYDESSAEWEEETGAESVLGLLLK---KLKDEGC-SARYLSGGFSKFQAEASEHCE 130 (343)
T ss_pred ceeeecccccccccccchhhhHHHHHHH---HHHhcCc-chhhhhcccchhhhhhhhhcc
Confidence 6788998843221 1111222222110 1112276 589999999999999999998
No 64
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.78 E-value=0.0025 Score=57.02 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=57.2
Q ss_pred CCeEEEEecCchhhccCCcCCceeCCCchhhhHH--------------------HHhhHHH-hhcc----ccCCCceEEE
Q psy1013 53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE--------------------FIESKVH-AQSN----ATCDKRRVLI 107 (258)
Q Consensus 53 ~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~--------------------~~~~~~~-~~~~----~~~~~~~~vV 107 (258)
++..+||||.|-||..||.|+++|+|...+.... ...+.+. +.+. ...+.+. -|
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~e~~~~-Gi 92 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQEENPV-GI 92 (334)
T ss_pred cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCc-ce
Confidence 4678999999999999999999999974332111 0000000 0000 0112332 33
Q ss_pred EecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHHHH
Q psy1013 108 FHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA 154 (258)
Q Consensus 108 ~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w~~ 154 (258)
+|..+|.|+...+.+|...+ |.. .--+.||+++.+.
T Consensus 93 -~c~rgg~rsk~v~~~l~~~~---------g~~-~~r~iGGeKalrt 128 (334)
T COG2603 93 -LCARGGLRSKIVQKWLGYAA---------GID-YPRVIGGEKALRT 128 (334)
T ss_pred -eeccccchhHHHHHHHHHHH---------Hhh-hhhhhchHHHHHH
Confidence 49999999999999994442 553 4456799988764
No 65
>KOG1093|consensus
Probab=95.45 E-value=0.0029 Score=61.29 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=62.3
Q ss_pred CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhhhHHHHhhHHHhhccccCCCceEEEE
Q psy1013 29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIF 108 (258)
Q Consensus 29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l~~~~~~~~~~~~~~~~~~~~~~vV~ 108 (258)
....+.||++++..+ ..+.++|.|...||..+|+++++|+|. . ..+.-.......+ .........+|+
T Consensus 618 se~~prmsAedl~~~---------~~l~v~d~r~~~ef~r~~~s~s~nip~-~-~~ea~l~~~~~l~-~~~~~~~~~~v~ 685 (725)
T KOG1093|consen 618 SEHCPRISAEDLIWL---------KMLYVLDTRQESEFQREHFSDSINIPF-N-NHEADLDWLRFLP-GIVCSEGKKCVV 685 (725)
T ss_pred hhcCccccHHHHHHH---------HHHHHHhHHHHHHHHHhhccccccCCc-c-chHHHHHHhhcch-HhHHhhCCeEEE
Confidence 345678999988776 347899999999999999999999999 4 2222111110000 111223333445
Q ss_pred ecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHH
Q psy1013 109 HCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ 151 (258)
Q Consensus 109 yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~ 151 (258)
+.. ..+-+.+....+..+ -++.+.+|++|+.+
T Consensus 686 ~~~-~~K~~~e~~~~~~~m----------k~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 686 VGK-NDKHAAERLTELYVM----------KVPRICILHDGFNN 717 (725)
T ss_pred ecc-chHHHHHHhhHHHHh----------cccHHHHHHHHHhh
Confidence 433 333444445555555 56788899999873
No 66
>KOG3636|consensus
Probab=93.28 E-value=0.3 Score=46.44 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=26.0
Q ss_pred CeEEEEecCchhhccCCcCCceeCCCchhh
Q psy1013 54 KYLIIDCRYPYEYKGGHIQGALNIYTREHL 83 (258)
Q Consensus 54 ~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l 83 (258)
++.|||||+.++|+.||+-.|.|+.. .-+
T Consensus 326 rFFiVDcRpaeqynaGHlstaFhlDc-~lm 354 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAFHLDC-VLM 354 (669)
T ss_pred EEEEEeccchhhcccccchhhhcccH-HHH
Confidence 68899999999999999999999987 444
No 67
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=90.60 E-value=0.17 Score=39.81 Aligned_cols=23 Identities=39% Similarity=0.898 Sum_probs=21.0
Q ss_pred CCCceeeechhhHHHHhhhccCC
Q psy1013 191 DYPEMYLLNGGYKQFYAQHQDLC 213 (258)
Q Consensus 191 ~ype~~~ld~g~~~~~~~~~~~c 213 (258)
.+..+++|+|||..|.+.||++|
T Consensus 110 ~~~~v~~L~GG~~~w~~~~p~~~ 132 (132)
T cd01446 110 EGCSVYLLKGGFEQFSSEFPELC 132 (132)
T ss_pred CCceEEEEcchHHHHHhhCcccC
Confidence 34679999999999999999999
No 68
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=90.58 E-value=1.3 Score=34.11 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=16.7
Q ss_pred ccCHHHHHHHHhcccCCCCCCeEEEEecCchh
Q psy1013 34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYE 65 (258)
Q Consensus 34 ~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~E 65 (258)
-|+++++.++-..+| -.||+.|+..|
T Consensus 14 Q~~~~d~~~la~~Gf------ktVInlRpd~E 39 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGF------KTVINLRPDGE 39 (110)
T ss_dssp S--HHHHHHHHHCT--------EEEE-S-TTS
T ss_pred CCCHHHHHHHHHCCC------cEEEECCCCCC
Confidence 589999999988753 47999998655
No 69
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=88.18 E-value=0.97 Score=35.98 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=21.0
Q ss_pred CccCHHHHHHHHhcccCCCCCCeEEEEecCchhh
Q psy1013 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY 66 (258)
Q Consensus 33 ~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey 66 (258)
..+|++++..+.+. +=-.|||.|++.|-
T Consensus 13 ~qlt~~d~~~L~~~------GiktVIdlR~~~E~ 40 (135)
T TIGR01244 13 PQLTKADAAQAAQL------GFKTVINNRPDREE 40 (135)
T ss_pred CCCCHHHHHHHHHC------CCcEEEECCCCCCC
Confidence 56889999887665 33579999987663
No 70
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=87.99 E-value=0.14 Score=46.91 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=34.1
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeCCCchhh
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHL 83 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvnip~~~~l 83 (258)
=+++++.+.+.. ...++|+|....|..+||+|++|+|. ..+
T Consensus 16 ~~~~~~~~~l~~-------~~~~~d~rg~i~~a~egIngtis~~~-~~~ 56 (314)
T PRK00142 16 EDPEAFRDEHLA-------LCKSLGLKGRILVAEEGINGTVSGTI-EQT 56 (314)
T ss_pred CCHHHHHHHHHH-------HHHHcCCeeEEEEcCCCceEEEEecH-HHH
Confidence 346888887775 35789999999999999999999998 544
No 71
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=84.13 E-value=3.4 Score=37.76 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=31.5
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc---CCcC-Cc
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG---GHIQ-GA 74 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~---gHIp-GA 74 (258)
...+...+|.+.+.+ ....|||+|...+|.+ |||+ |.
T Consensus 135 ~tg~gKt~Ll~~L~~------~~~~VvDlr~~a~hrGs~fG~~~~~~ 175 (311)
T TIGR03167 135 MTGSGKTELLHALAN------AGAQVLDLEGLANHRGSSFGALGLGP 175 (311)
T ss_pred CCCcCHHHHHHHHhc------CCCeEEECCchHHhcCcccCCCCCCC
Confidence 466888999999987 5688999999999999 8998 53
No 72
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=76.39 E-value=1.7 Score=33.76 Aligned_cols=22 Identities=59% Similarity=1.342 Sum_probs=19.5
Q ss_pred CCCCCCCCceeeechhhHHHHh
Q psy1013 186 AYPTLDYPEMYLLNGGYKQFYA 207 (258)
Q Consensus 186 ~~p~l~ype~~~ld~g~~~~~~ 207 (258)
.+|.+-++++|+|+|||..||+
T Consensus 100 ~~~~~g~~~v~~L~GG~~~f~~ 121 (121)
T cd01530 100 RYPLLYYPEIYILEGGYKNFFE 121 (121)
T ss_pred cCCCCCCCeEEEEcChhHhhcC
Confidence 6777888999999999999985
No 73
>PLN02727 NAD kinase
Probab=60.08 E-value=37 Score=35.65 Aligned_cols=107 Identities=17% Similarity=0.244 Sum_probs=58.0
Q ss_pred cccccccccccccccccCC--CC-----CCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcC---------
Q psy1013 9 LNLIGDFSKQFILPLVPDG--KH-----HDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQ--------- 72 (258)
Q Consensus 9 ~~l~gd~s~~~~lp~~~~~--~~-----~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIp--------- 72 (258)
+.|+.+|...+..+...+. .. ..-.-+++++++++.+.+| -.||+.|...|- .+..+
T Consensus 236 ~~~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~Gf------KTIINLRpd~E~-~q~~~~ee~eAae~ 308 (986)
T PLN02727 236 HTLFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGF------KTIVDLRAEIVK-DNFYQAAVDDAISS 308 (986)
T ss_pred cccccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCC------eEEEECCCCCcC-CCchhHHHHHHHHH
Confidence 4567777776655443111 11 1235799999998887753 479999987761 22211
Q ss_pred ---CceeCCCc------hhhhHHHHhhHHHhhccccCCCceEEEEecCCCCC-c-HHHHHHHHHHhHHh
Q psy1013 73 ---GALNIYTR------EHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAE-R-GPTLSRYLRSEDRA 130 (258)
Q Consensus 73 ---GAvnip~~------~~l~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~~-r-s~~~a~~L~~~~r~ 130 (258)
.-+|+|.. .+...++.. ......+..|.+||. +|. | |..+|.+|..+.|.
T Consensus 309 ~GL~yVhIPVs~~~apt~EqVe~fa~-------~l~~slpkPVLvHCK-SGarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 309 GKIEVVKIPVEVRTAPSAEQVEKFAS-------LVSDSSKKPIYLHSK-EGVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred cCCeEEEeecCCCCCCCHHHHHHHHH-------HHHhhcCCCEEEECC-CCCchHHHHHHHHHHHHccc
Confidence 12455541 111222222 111112334788999 666 4 44457777777553
No 74
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=56.37 E-value=14 Score=25.76 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=24.4
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCch
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPY 64 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~ 64 (258)
-.+||.+++++++.++ .++.|+|..+-.
T Consensus 17 s~YiTL~di~~lV~~g-----~~~~V~D~ktge 44 (64)
T PF07879_consen 17 SSYITLEDIAQLVREG-----EDFKVVDAKTGE 44 (64)
T ss_pred ceeEeHHHHHHHHHCC-----CeEEEEECCCCc
Confidence 4689999999999987 899999998744
No 75
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=46.10 E-value=40 Score=27.24 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=19.8
Q ss_pred CCCCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhcc
Q psy1013 29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68 (258)
Q Consensus 29 ~~~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~ 68 (258)
...+..+|++++..+.+- .=-.|||.|++.|.+.
T Consensus 24 S~~l~~lt~~d~~~L~~l------gI~tIiDLRs~~E~~~ 57 (164)
T PF13350_consen 24 SGNLSNLTEADLERLREL------GIRTIIDLRSPTERER 57 (164)
T ss_dssp ES--TT--HHHHHHHHHT------T--EEEE-S-HHHHHH
T ss_pred cCCcCcCCHHHHHHHHhC------CCCEEEECCCcccccc
Confidence 356778999998877743 4467999999999654
No 76
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=45.68 E-value=35 Score=27.71 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=20.8
Q ss_pred eEEEEecCC---CCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHH
Q psy1013 104 RVLIFHCEY---SAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQF 152 (258)
Q Consensus 104 ~~vV~yc~~---s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w 152 (258)
.++++.++. .+..-..++.+|+.+ |..+...||||-..-
T Consensus 102 ~l~l~~vdg~~~~g~tl~ela~~l~~l----------G~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 102 KLLLIVVDGRQSAGMTLDELAQLLKSL----------GCVDAINLDGGGSST 143 (170)
T ss_dssp EEEEEEE----S--B-HHHHHHHHHHH----------T-SEEEE---GGG--
T ss_pred cEEEEEEcCCcCCCCCHHHHHHHHHHc----------CcCeEEEecCCcceE
Confidence 334444552 245567778888888 999999999997653
No 77
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=45.36 E-value=27 Score=32.21 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=32.8
Q ss_pred CCCccCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCC-ceeCC
Q psy1013 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQG-ALNIY 78 (258)
Q Consensus 31 ~~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpG-Avnip 78 (258)
....|+++++.++++.....-..+..+||+|++. |+..|+|+ ...|.
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr~~i~ 322 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGRVLVH 322 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCCEEEE
Confidence 4567999999999853100011578999999988 99888864 44444
No 78
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=41.56 E-value=97 Score=28.73 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=24.4
Q ss_pred cCHHHHHHHHhcccCCCCCCeEEEEecCchhhccCCcCCceeC
Q psy1013 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77 (258)
Q Consensus 35 Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~Ey~~gHIpGAvni 77 (258)
..-.++...|.+ ....|||+|.+.+|.+ ...|.+..
T Consensus 152 sGKT~iL~~L~~------~~~~vlDlE~~aehrG-S~fG~~~~ 187 (345)
T PRK11784 152 SGKTELLQALAN------AGAQVLDLEGLANHRG-SSFGRLGG 187 (345)
T ss_pred ccHHHHHHHHHh------cCCeEEECCchhhhcc-ccccCCCC
Confidence 445666666665 4678999999999965 34444444
No 79
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.33 E-value=51 Score=30.56 Aligned_cols=46 Identities=26% Similarity=0.418 Sum_probs=27.7
Q ss_pred CCceEEEEecCCCCCcHH-------------HHHHHHHHhHHhcccCCCCCCCCeEEecchHHHH
Q psy1013 101 DKRRVLIFHCEYSAERGP-------------TLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQF 152 (258)
Q Consensus 101 ~~~~~vV~yc~~s~~rs~-------------~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w 152 (258)
-++.+||+.|++.....- .+.+.++++.+. .+.+-+.+|+|||..+
T Consensus 238 f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~------~~~~~~~vleGGY~~~ 296 (340)
T COG0123 238 FKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEG------YGGPVVAVLEGGYNLD 296 (340)
T ss_pred cCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHh------cCCCeEEEecCCCChH
Confidence 466778889987554321 222333333211 1556788999999887
No 80
>PTZ00063 histone deacetylase; Provisional
Probab=40.69 E-value=42 Score=32.28 Aligned_cols=68 Identities=15% Similarity=0.289 Sum_probs=35.6
Q ss_pred ceeCCCchhhhHHHHhhHHHhhc--cccCCCceEEEEecCCCCCcH-------------HHHHHHHHHhHHhcccCCCCC
Q psy1013 74 ALNIYTREHLVKEFIESKVHAQS--NATCDKRRVLIFHCEYSAERG-------------PTLSRYLRSEDRAHNAYPTLD 138 (258)
Q Consensus 74 Avnip~~~~l~~~~~~~~~~~~~--~~~~~~~~~vV~yc~~s~~rs-------------~~~a~~L~~~~r~~n~yp~lG 138 (258)
++|+|++....+......+...+ .+..-++..||+-|++.+..+ ..+.+++++. +
T Consensus 220 ~vNvPL~~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~----------~ 289 (436)
T PTZ00063 220 SVNVPLNDGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSL----------N 289 (436)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhc----------C
Confidence 59999854332221111111101 112346677888898754432 1223334443 6
Q ss_pred CCCeEEecchHHH
Q psy1013 139 YPEMYLLNGGYKQ 151 (258)
Q Consensus 139 y~~V~iL~GG~~~ 151 (258)
-+=|.++.|||.-
T Consensus 290 ~pil~l~gGGY~~ 302 (436)
T PTZ00063 290 IPLLVLGGGGYTI 302 (436)
T ss_pred CCEEEEeCccCCc
Confidence 6778899999964
No 81
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=40.21 E-value=72 Score=24.59 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=12.9
Q ss_pred ceEEEEecCCCCCcHHHH
Q psy1013 103 RRVLIFHCEYSAERGPTL 120 (258)
Q Consensus 103 ~~~vV~yc~~s~~rs~~~ 120 (258)
...|++||..+-.|+..+
T Consensus 78 ~~~VlVHC~~G~~RS~~v 95 (138)
T smart00195 78 GGKVLVHCQAGVSRSATL 95 (138)
T ss_pred CCeEEEECCCCCchHHHH
Confidence 344788999666687765
No 82
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=37.51 E-value=38 Score=26.04 Aligned_cols=29 Identities=10% Similarity=0.326 Sum_probs=24.8
Q ss_pred CCccCHHHHHHHHhcccCCCCCCeEEEEecCchh
Q psy1013 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYE 65 (258)
Q Consensus 32 ~~~Is~~~L~~~l~~~~~~~~~~~~IIDvR~~~E 65 (258)
-.+||.++++++..++ .++.|+|+.+-++
T Consensus 17 S~YITLedi~~lV~~g-----~~f~V~DakTgeD 45 (107)
T TIGR01848 17 SSYVTLEDIRDLVREG-----REFQVVDSKSGDD 45 (107)
T ss_pred cceeeHHHHHHHHHCC-----CeEEEEECCCCch
Confidence 4689999999999987 8999999987443
No 83
>PTZ00346 histone deacetylase; Provisional
Probab=37.09 E-value=57 Score=31.31 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=25.6
Q ss_pred CCceEEEEecCCCCCcH-------------HHHHHHHHHhHHhcccCCCCCCCCeEEecchHHH
Q psy1013 101 DKRRVLIFHCEYSAERG-------------PTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ 151 (258)
Q Consensus 101 ~~~~~vV~yc~~s~~rs-------------~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~ 151 (258)
-++..||+-|++....+ ..+.+.++.. +.+=|.++.|||.-
T Consensus 267 F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~----------~~plv~vleGGY~~ 320 (429)
T PTZ00346 267 YSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDL----------GIPMLALGGGGYTI 320 (429)
T ss_pred cCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhc----------CCCEEEEeCCcCCc
Confidence 46677888888754432 1223344443 66778899999963
No 84
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=29.85 E-value=77 Score=24.20 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=12.9
Q ss_pred eEEEEecCCCCCcHHHH
Q psy1013 104 RVLIFHCEYSAERGPTL 120 (258)
Q Consensus 104 ~~vV~yc~~s~~rs~~~ 120 (258)
..|++||..+..|+..+
T Consensus 82 ~~vlVHC~~G~~Rs~~~ 98 (139)
T cd00127 82 GKVLVHCLAGVSRSATL 98 (139)
T ss_pred CcEEEECCCCCchhHHH
Confidence 34788999666788866
No 85
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=27.41 E-value=1.7e+02 Score=25.69 Aligned_cols=42 Identities=7% Similarity=0.126 Sum_probs=28.0
Q ss_pred ccCCCceEEEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEe
Q psy1013 98 ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLL 145 (258)
Q Consensus 98 ~~~~~~~~vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL 145 (258)
++..+..++|+.|..+...+..++.-|..+.++. ||.+|++-
T Consensus 132 ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~------~f~~v~v~ 173 (265)
T COG4822 132 PPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEY------GFDNVFVA 173 (265)
T ss_pred CCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhc------CCCceEEE
Confidence 3446777889999977766666666555554332 89888753
No 86
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=26.13 E-value=64 Score=25.17 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=28.3
Q ss_pred EEEecCCCCCcHHHHHHHHHHhHHhcccCCCCCCCCeEEecchHHHH
Q psy1013 106 LIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQF 152 (258)
Q Consensus 106 vV~yc~~s~~rs~~~a~~L~~~~r~~n~yp~lGy~~V~iL~GG~~~w 152 (258)
|+|-|.....||+-+..+|+.. .-.++.+...|..+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~----------~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAI----------VGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHh----------cCCCEEEEcCcccCC
Confidence 4577876778999998888887 333588888888876
No 87
>KOG1342|consensus
Probab=20.90 E-value=1.7e+02 Score=27.69 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=21.4
Q ss_pred ceeCCCchhhhHHH----HhhHHHhhccccCCCceEEEEecCCCCC
Q psy1013 74 ALNIYTREHLVKEF----IESKVHAQSNATCDKRRVLIFHCEYSAE 115 (258)
Q Consensus 74 Avnip~~~~l~~~~----~~~~~~~~~~~~~~~~~~vV~yc~~s~~ 115 (258)
|+|+|+.+-+.+.. +.+.+.. ....-++..||+-|+..+-
T Consensus 222 avNVPL~dGidD~sy~~if~pIi~~--v~e~f~P~AiVLQCGaDSL 265 (425)
T KOG1342|consen 222 AVNVPLKDGIDDESYESIFKPIISK--VMERFQPEAIVLQCGADSL 265 (425)
T ss_pred EEccchhccCCcHHHHHHHHHHHHH--HHHHhCCceEEEEcCCccc
Confidence 89999854443322 2211111 1122456778999995443
No 88
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=20.14 E-value=60 Score=29.44 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=7.8
Q ss_pred CCeEEecchHHH
Q psy1013 140 PEMYLLNGGYKQ 151 (258)
Q Consensus 140 ~~V~iL~GG~~~ 151 (258)
+=|.+|+|||.-
T Consensus 285 ~~v~vleGGY~~ 296 (311)
T PF00850_consen 285 PVVSVLEGGYNP 296 (311)
T ss_dssp CEEEEE-S-SSH
T ss_pred cEEEEECCCCCh
Confidence 558899999965
Done!