RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1013
(258 letters)
>gnl|CDD|238788 cd01530, Cdc25, Cdc25 phosphatases are members of the Rhodanese
Homology Domain superfamily. They activate the cell
division kinases throughout the cell cycle progression.
Cdc25 phosphatases dephosphorylate phosphotyrosine and
phosphothreonine residues, in order to activate their
Cdk/cyclin substrates. Cdc25A phosphatase functions to
regulate S phase entry and Cdc25B is required for G2/M
phase transition of the cell cycle. The Cdc25 domain
binds oxyanions at the catalytic site and has the
signature motif (H/YCxxxxxR).
Length = 121
Score = 175 bits (446), Expect = 3e-56
Identities = 67/125 (53%), Positives = 95/125 (76%), Gaps = 6/125 (4%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
LK ISP+TLARL++G++++ DKY+IIDCR+PYEY GGHI+GA+N+ T++ L + F++
Sbjct: 1 LKRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDK- 59
Query: 92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA--HNAYPTLDYPEMYLLNGGY 149
A+ KRRVLIFHCE+S++RGP ++R+LR+ DR N YP L YPE+Y+L GGY
Sbjct: 60 ---PGVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGY 116
Query: 150 KQFYA 154
K F+
Sbjct: 117 KNFFE 121
>gnl|CDD|227436 COG5105, MIH1, Mitotic inducer, protein phosphatase [Cell division
and chromosome partitioning].
Length = 427
Score = 145 bits (366), Expect = 7e-41
Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 11/168 (6%)
Query: 18 QFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
F LP + GK ++ IS +TL +++ G +N K +IIDCR+ YEY+GGHI A+NI
Sbjct: 227 VFPLPTLGPGKSDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNI 286
Query: 78 YTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNA--YP 135
+ + L F K R LIFHCE+S+ R P L+++LR+ DR N YP
Sbjct: 287 SSTKKLGLLFR-HKPLTH-------PRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYP 338
Query: 136 TLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKSRYLRSEDR 182
L YPE+Y+L GGYK+FY+ + DLC+ GY+ M + R L D+
Sbjct: 339 LLTYPEVYILEGGYKKFYSNYPDLCDPKGYVTMNNAELDYRCLYKMDK 386
>gnl|CDD|238720 cd01443, Cdc25_Acr2p, Cdc25 enzymes are members of the Rhodanese
Homology Domain (RHOD) superfamily. Also included in
this CD are eukaryotic arsenate resistance proteins such
as Saccharomyces cerevisiae Acr2p and similar proteins.
Cdc25 phosphatases activate the cell division kinases
throughout the cell cycle progression. Cdc25
phosphatases dephosphorylate phosphotyrosine and
phosphothreonine residues, in order to activate their
Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains
have the signature motif (H/YCxxxxxR).
Length = 113
Score = 89.0 bits (221), Expect = 1e-22
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
LK ISP+ L L+ ++ ++++D R +Y+GGHI+G++N+ + +
Sbjct: 1 LKYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPA--QSCYQTLPQV 57
Query: 92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ 151
S ++ IF+C S RGP +R+ R P+ Y+L GG K
Sbjct: 58 YALFSL---AGVKLAIFYCGSSQGRGPRAARWFADYLRK----VGESLPKSYILTGGIKA 110
Query: 152 FY 153
+Y
Sbjct: 111 WY 112
Score = 27.4 bits (61), Expect = 4.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 175 RYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFY 206
R+ R P+ Y+L GG K +Y
Sbjct: 85 RWFADYLRK----VGESLPKSYILTGGIKAWY 112
>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain. An alpha beta fold
found duplicated in the Rhodanese protein. The the
Cysteine containing enzymatically active version of the
domain is also found in the CDC25 class of protein
phosphatases and a variety of proteins such as sulfide
dehydrogenases and stress proteins such as Senesence
specific protein 1 in plants, PspE and GlpE in bacteria
and cyanide and arsenate resistance proteins. Inactive
versions with a loss of the cysteine are also seen in
Dual specificity phosphatases, ubiquitin hydrolases from
yeast and in sulfuryltransferases. These are likely to
play a role in protein interactions.
Length = 100
Score = 77.5 bits (191), Expect = 2e-18
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 53 DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQS---NATCDKRRVLIFH 109
+K +++D R P EY+GGHI GA+NI E L + + + DK + ++ +
Sbjct: 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVY 62
Query: 110 CEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQH 156
C S R + LR L + +YLL+GGYK++ A
Sbjct: 63 C-RSGNRSAKAAWLLRE----------LGFKNVYLLDGGYKEWSAAG 98
>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain. Rhodanese has an
internal duplication. This Pfam represents a single copy
of this duplicated domain. The domain is found as a
single copy in other proteins, including phosphatases
and ubiquitin C-terminal hydrolases.
Length = 106
Score = 66.4 bits (162), Expect = 4e-14
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 36 SPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQ 95
+ + L L+ D ++ID R P EY GHI GA+NI L +
Sbjct: 1 TAEELKALLEA------DDVVLIDVRSPEEYAKGHIPGAVNI--PLSLPSLDKLESELEE 52
Query: 96 SNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQ 155
DK + ++ +C G + L +A Y +Y+L+GG++ + A+
Sbjct: 53 LGKKLDKDKTIVVYCASGNRSGQAAALLLALILKALG------YKNVYVLDGGFEAWKAE 106
>gnl|CDD|238789 cd01531, Acr2p, Eukaryotic arsenate resistance proteins are members
of the Rhodanese Homology Domain superfamily. Included
in this CD is the Saccharomyces cerevisiae arsenate
reductase protein, Acr2p, and other yeast and plant
homologs.
Length = 113
Score = 56.7 bits (137), Expect = 1e-10
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI-YTREHLVKEFIES 90
+ ISP L IR ++D R +Y GGHI+G+ + TR +
Sbjct: 1 VSYISPAQLKGWIRNGRPPFQ----VVDVR-DEDYAGGHIKGSWHYPSTRFKA-----QL 50
Query: 91 KVHAQSNATCDKRRVLIFHCEYSAERGPT----LSRYLRSEDRAHNAYPTLDYPEMYLLN 146
Q + K V +FHC S RGP+ RYL ED + E+Y+L+
Sbjct: 51 NQLVQLLSGSKKDTV-VFHCALSQVRGPSAARKFLRYLDEEDLETSK------FEVYVLH 103
Query: 147 GGY 149
GG+
Sbjct: 104 GGF 106
>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold
domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins such as sulfide
dehydrogenases and certain stress proteins such as
senesence specific protein 1 in plants, PspE and GlpE in
bacteria and cyanide and arsenate resistance proteins.
Inactive versions (no active site cysteine) are also
seen in dual specificity phosphatases, ubiquitin
hydrolases from yeast and in sulfuryltransferases, where
they are believed to play a regulatory role in
multidomain proteins.
Length = 89
Score = 53.1 bits (128), Expect = 2e-09
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 26/112 (23%)
Query: 39 TLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNA 98
L L+ E +++D R P EY GHI GA+NI + E E +
Sbjct: 1 ELKELLDDE------DAVLLDVREPEEYAAGHIPGAINI-----PLSELEERAALLE--- 46
Query: 99 TCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
DK + ++ +C S R ++ LR +Y L GG
Sbjct: 47 -LDKDKPIVVYC-RSGNRSARAAKLLRK----------AGGTNVYNLEGGML 86
>gnl|CDD|238723 cd01446, DSP_MapKP, N-terminal regulatory rhodanese domain of dual
specificity phosphatases (DSP), such as Mapk
Phosphatase. This domain is believed to determine
substrate specificity by binding the substrate, such as
ERK2, and activating the C-terminal catalytic domain by
inducing a conformational change. This domain has
homology to the Rhodanese Homology Domain.
Length = 132
Score = 48.4 bits (116), Expect = 2e-07
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHA 94
I LA L+R ++ L++DCR EY HI+GA+N+ L + K+
Sbjct: 2 IDCAWLAALLREG----GERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILL 57
Query: 95 QSNATC--DKRRV-LIFHCE---YSAERGPTLSRYLRSEDRAHNAYPTL-----DYPEMY 143
Q +C D+ R+ Y LR + A + L + +Y
Sbjct: 58 QQLLSCPEDRDRLRRGESLAVVVYDESSSDRER--LREDSTAESVLGKLLRKLQEGCSVY 115
Query: 144 LLNGGYKQFYAQHQDLC 160
LL GG++QF ++ +LC
Sbjct: 116 LLKGGFEQFSSEFPELC 132
Score = 31.9 bits (73), Expect = 0.14
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 193 PEMYLLNGGYKQFYAQHQDLC 213
+YLL GG++QF ++ +LC
Sbjct: 112 CSVYLLKGGFEQFSSEFPELC 132
>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE.
Members of this very narrowly defined protein family
are proteins active as rhodanese (EC 2.8.1.1) and found
in the extended variants of the phage shock protein
(psp operon) in Escherichia coli and a few closely
related species. Note that the designation phage shock
protein PspE has been applied, incorrectly, in many
instances where the genome lacks the phage shock
regulon entirely.
Length = 101
Score = 35.8 bits (82), Expect = 0.003
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 58 IDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKV 92
ID R P +Y+ HIQGA+NI +E +KE I + V
Sbjct: 22 IDVRIPEQYQQEHIQGAINIPLKE--IKEHIATAV 54
>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain
superfamily. This CD includes Escherichia coli YgaP, and
similar uncharacterized putative rhodanese-related
sulfurtransferases.
Length = 99
Score = 34.0 bits (78), Expect = 0.015
Identities = 27/129 (20%), Positives = 36/129 (27%), Gaps = 35/129 (27%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
L ISP+ L+ +++D R P EY I GA +
Sbjct: 1 LTTISPNDACELLA-------QGAVLVDIREPDEYLRERIPGARL-----------VPLS 42
Query: 92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDY---PEMYLLNGG 148
+IFHC RS R L E Y+L GG
Sbjct: 43 QLESEGLPLVGANAIIFHC--------------RSGMRTQQNAERLAAISAGEAYVLEGG 88
Query: 149 YKQFYAQHQ 157
+ A
Sbjct: 89 LDAWKAAGL 97
>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain
superfamily. This CD includes the heat shock protein
67B2 of Drosophila melanogaster and other similar
proteins, many of which are uncharacterized.
Length = 106
Score = 33.8 bits (78), Expect = 0.019
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 56 LIIDCRYPYEYKGGHIQGALNIYTREH 82
++ID R P E K G I GA+NI
Sbjct: 17 VLIDVREPEELKTGKIPGAINIPLSSL 43
>gnl|CDD|238776 cd01518, RHOD_YceA, Member of the Rhodanese Homology Domain
superfamily. This CD includes Escherichia coli YceA,
Bacillus subtilis YbfQ, and similar uncharacterized
proteins.
Length = 101
Score = 33.3 bits (77), Expect = 0.024
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 47 EFNDVVDK--YLIIDCRYPYEYKGGHIQGALNIYTR 80
E+N++++ +++D R YEY GH +GA+N
Sbjct: 8 EWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVD 43
>gnl|CDD|182356 PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase;
Provisional.
Length = 104
Score = 33.3 bits (76), Expect = 0.031
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 58 IDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKV 92
ID R P +Y+ H+QGA+NI +E VKE I + V
Sbjct: 24 IDVRVPEQYQQEHVQGAINIPLKE--VKERIATAV 56
>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain
superfamily. Included in this CD are the Lactococcus
lactis NADH oxidase, Bacillus cereus NADH
dehydrogenase, and Bacteroides thetaiotaomicron
pyridine nucleotide-disulphide oxidoreductase, and
similar rhodanese-like domains found C-terminal of the
pyridine nucleotide-disulphide oxidoreductase
(Pyr-redox) domain and the Pyr-redox dimerization
domain.
Length = 90
Score = 32.6 bits (75), Expect = 0.037
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 53 DKYLIIDCRYPYEYKGGHIQGALNI 77
D +ID R P E++ GHI+GA+NI
Sbjct: 12 DGVTLIDVRTPQEFEKGHIKGAINI 36
>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion
transport and metabolism].
Length = 110
Score = 32.6 bits (74), Expect = 0.047
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQG-ALNIYTREHLVKEFIE 89
L+ IS D A L+ GE +++D R P EY+ GHI G A+NI E +K
Sbjct: 3 RLETISEDEAALLLAGE------DAVLLDVREPEEYERGHIPGAAINIPLSE--LKAAEN 54
Query: 90 SKVHAQSNATCDKRRVLIFHCE 111
++ +C
Sbjct: 55 LLEL-------PDDDPIVVYCA 69
>gnl|CDD|237579 PRK13987, PRK13987, cell division topological specificity factor
MinE; Provisional.
Length = 91
Score = 32.3 bits (74), Expect = 0.053
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 30 HDLKNISPDTLARLIRGEFNDVVDKYLIID 59
HD +ISPD L +I+ + V+ KY+ ID
Sbjct: 27 HDRGDISPDVL-EMIKEDILKVISKYVEID 55
>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase. The
Escherichia coli YbbB protein was shown to encode a
selenophosphate-dependent tRNA 2-selenouridine
synthase, essential for modification of some tRNAs to
replace a sulfur atom with selenium. This enzyme works
with SelD, the selenium donor protein, which also acts
in selenocysteine incorporation. Although the members
of this protein family show a fairly deep split,
sequences from both sides of the split are supported by
co-occurence with, and often proximity to, the selD
gene [Protein synthesis, tRNA and rRNA base
modification].
Length = 311
Score = 33.3 bits (77), Expect = 0.096
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 53 DKYLIIDCRYPYEYKGGHIQGALNIY 78
+ID R P E+ GH+ GA+N+
Sbjct: 1 AFDPLIDVRSPAEFAEGHLPGAINLP 26
>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB;
Validated.
Length = 376
Score = 33.1 bits (76), Expect = 0.14
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
++ ISP ++ID R +E G +GAL I
Sbjct: 2 IREISPAEARARAAQGA-------VLIDVREAHERASGQAEGALRI 40
>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain
superfamily. This CD includes several putative ATP /GTP
binding proteins including E. coli YbbB.
Length = 128
Score = 31.5 bits (72), Expect = 0.18
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 55 YLIIDCRYPYEYKGGHIQGALNI 77
+ID R P E+ GH+ GA+N+
Sbjct: 14 GPLIDVRSPKEFFEGHLPGAINL 36
>gnl|CDD|238725 cd01448, TST_Repeat_1, Thiosulfate sulfurtransferase (TST),
N-terminal, inactive domain. TST contains 2 copies of
the Rhodanese Homology Domain; this is the 1st repeat,
which does not contain the catalytically active Cys
residue. The role of the 1st repeat is uncertain, but
it is believed to be involved in protein interaction.
Length = 122
Score = 31.1 bits (71), Expect = 0.24
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 13/50 (26%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRY-------PYEYKGGHIQGALNI 77
+SPD LA + DV I+D R+ EY GHI GA+
Sbjct: 2 VSPDWLAEHLDDP--DVR----ILDARWYLPDRDGRKEYLEGHIPGAVFF 45
>gnl|CDD|238779 cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain
superfamily. This CD includes the putative
rhodanese-like protein, Psp2, of Yersinia pestis biovar
Medievalis and other similar uncharacterized proteins.
Length = 110
Score = 30.8 bits (70), Expect = 0.25
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 54 KYLIIDCRYPYEYKGGHIQGALNIYTRE 81
++++D R Y GH+ GA+N+ RE
Sbjct: 25 DFVLVDVRSAEAYARGHVPGAINLPHRE 52
>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.
Length = 345
Score = 32.1 bits (74), Expect = 0.27
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 53 DKYLIIDCRYPYEYKGGHIQGALNIY 78
+ +ID R P E+ GHI GA+N+
Sbjct: 14 NDTPLIDVRSPIEFAEGHIPGAINLP 39
>gnl|CDD|178735 PLN03193, PLN03193, beta-1,3-galactosyltransferase; Provisional.
Length = 408
Score = 31.9 bits (72), Expect = 0.32
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 104 RVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYL-LNGGYKQFYA 154
R +I H SA G L R + +EDR H + LD+ E YL L+ K ++A
Sbjct: 181 RFVIGH---SATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFA 229
>gnl|CDD|223982 COG1054, COG1054, Predicted sulfurtransferase [General function
prediction only].
Length = 308
Score = 31.1 bits (71), Expect = 0.57
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 47 EFNDVV--DKYLIIDCRYPYEYKGGHIQGALNIYTR 80
++N+++ ++ID R YE GH +GA+
Sbjct: 119 DWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIE 154
>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion
transport and metabolism].
Length = 285
Score = 30.8 bits (70), Expect = 0.63
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPY--EYKGGHIQGALNI 77
+SPD LA + +VD II EY GHI GA+
Sbjct: 13 VSPDWLAENLDDPAVVIVDA-RIILPDPDDAEEYLEGHIPGAVFF 56
Score = 29.2 bits (66), Expect = 2.0
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 10/33 (30%)
Query: 55 YLIIDCR----------YPYEYKGGHIQGALNI 77
L+ID R P + K GHI GA+NI
Sbjct: 172 VLLIDARSPERFRGKEPEPRDGKAGHIPGAINI 204
>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST),
C-terminal, catalytic domain. TST contains 2 copies of
the Rhodanese Homology Domain; this is the second
repeat. Only the second repeat contains the
catalytically active Cys residue.
Length = 118
Score = 28.8 bits (65), Expect = 1.2
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 21/75 (28%)
Query: 54 KYLIIDCRYPYEYKG-----------GHIQGALNIYTREHLV-------KEFIESKVHAQ 95
++D R P ++G GHI GA+NI L E + + A
Sbjct: 14 DVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAAL 73
Query: 96 SNATCDKRRVLIFHC 110
T DK +I +C
Sbjct: 74 -GITPDKP--VIVYC 85
>gnl|CDD|238792 cd01534, 4RHOD_Repeat_3, Member of the Rhodanese Homology Domain
superfamily, repeat 3. This CD includes putative
rhodanese-related sulfurtransferases which contain 4
copies of the Rhodanese Homology Domain. This CD aligns
the 3rd repeat which does not contain the putative
catalytic Cys residue.
Length = 95
Score = 28.2 bits (63), Expect = 1.3
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALN 76
I LAR V Y D R P EY+ GH+ G +
Sbjct: 1 IGAAELARWAAEGDRTV---YRF-DVRTPEEYEAGHLPGFRH 38
>gnl|CDD|234663 PRK00142, PRK00142, putative rhodanese-related sulfurtransferase;
Provisional.
Length = 314
Score = 29.4 bits (67), Expect = 1.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 47 EFNDVVDK--YLIIDCRYPYEYKGGHIQGALNIYTR 80
E N+++D + ID R YEY+ GH + A+
Sbjct: 118 EVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIE 153
>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain
superfamily. This CD includes several putative
molybdopterin synthase sulfurylases including the
molybdenum cofactor biosynthetic protein (CnxF) of
Aspergillus nidulans and the molybdenum cofactor
synthesis protein 3 (MOCS3) of Homo sapiens. These
rhodanese-like domains are found C-terminal of the ThiF
and MoeZ_MoeB domains.
Length = 122
Score = 28.4 bits (64), Expect = 1.8
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
+S +++ K++++D R ++ + A+NI
Sbjct: 10 VSVKDYKNILQAG-----KKHVLLDVRPKVHFEICRLPEAINI 47
>gnl|CDD|197280 cd09183, PLDc_FAM83C_N, N-terminal phospholipase D-like domain of
the uncharacterized protein, Family with sequence
similarity 83C. N-terminal phospholipase D (PLD)-like
domain of the uncharacterized protein, Family with
sequence similarity 83C (FAM83C). Since the N-terminal
PLD-like domain of FAM83 proteins shows only trace
similarity to the PLD catalytic domain and lacks the
functionally important histidine residue, FAM83 proteins
may share a similar three-dimensional fold with PLD
enzymes, but are most unlikely to carry PLD activity.
The N-terminus of FAM83C shows high homology to other
FAM83 family members, indicating that FAM83C might have
arisen early in vertebrate evolution by duplication of a
gene in the FAM83 family.
Length = 274
Score = 28.3 bits (63), Expect = 4.0
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 51 VVDKYLIIDCR------YPYEYKGGHIQGALNIYTREHLVKEF 87
V++K+L+IDC Y + + + L + R ++V+EF
Sbjct: 221 VLEKFLLIDCEQVVAGSYSFTWLSSQVHSNLVTHFRGNIVEEF 263
>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB;
Validated.
Length = 355
Score = 28.3 bits (63), Expect = 4.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 47 EFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
+ + D +ID R P E+ I GA N+
Sbjct: 267 RVSALPDGVTLIDVREPSEFAAYSIPGAHNV 297
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 27.8 bits (62), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 136 TLDYPEMYLLNGGYKQFYAQHQDLCEG 162
TL Y E+Y L+G + + QH DL G
Sbjct: 49 TLTYGELYKLSGAFAAWLQQHTDLKPG 75
Score = 27.8 bits (62), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 189 TLDYPEMYLLNGGYKQFYAQHQDLCEG 215
TL Y E+Y L+G + + QH DL G
Sbjct: 49 TLTYGELYKLSGAFAAWLQQHTDLKPG 75
>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain
superfamily. This CD includes predicted proteins with
rhodanese-like domains found N-terminal of the
metallo-beta-lactamase domain.
Length = 100
Score = 26.3 bits (58), Expect = 6.9
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 35 ISP-DTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEF-IESKV 92
+ P D ARL+ G+ I+D R +Y+ I G N + IE +
Sbjct: 1 LDPEDLYARLLAGQ------PLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDI 54
Query: 93 HAQ----SNAT--CDKRRVLIFHCEYSAERGPTLSRYLR 125
Q T C K F E AERG + YL
Sbjct: 55 LDQLPDDQEVTVICAKEGSSQFVAELLAERGYDV-DYLA 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.433
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,447,463
Number of extensions: 1268015
Number of successful extensions: 974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 47
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)