RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1013
(258 letters)
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate
trapping, active site mutant, hydrolase; 1.52A {Homo
sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A
1cwt_A 2ifd_A
Length = 175
Score = 200 bits (509), Expect = 3e-65
Identities = 86/178 (48%), Positives = 121/178 (67%), Gaps = 7/178 (3%)
Query: 9 LNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG 68
+ LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+G
Sbjct: 1 MELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEG 59
Query: 69 GHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSED 128
GHI+ A+N+ ++S + S DKR +LIFH E+S+ERGP + R++R D
Sbjct: 60 GHIKTAVNLPLERDAESFLLKSPIAPCSL---DKRVILIFHSEFSSERGPRMCRFIRERD 116
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKS--RYLRSEDRA 183
RA N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K + R + R+
Sbjct: 117 RAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRLKTRS 174
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 188 bits (478), Expect = 7e-61
Identities = 75/164 (45%), Positives = 110/164 (67%), Gaps = 6/164 (3%)
Query: 11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
LIGDFSK ++ V GKH DLK ISP+ +A ++ G+F +++ +++IIDCRYPYEY+GGH
Sbjct: 2 LIGDFSKGYLFHTVA-GKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGH 60
Query: 71 IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
I+GA+N++ E + ++ + KR +++FHCE+S+ERGP + RY+R DR
Sbjct: 61 IKGAVNLHMEEEVEDFLLKKPIVPTD----GKRVIVVFHCEFSSERGPRMCRYVRERDRL 116
Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
N YP L YPE+Y+L GGYK+F+ + Q CE Y PM +K
Sbjct: 117 GNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFK 160
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell
cycle phosphatase, dual specificity protein phosphatase;
1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A
2uzq_A
Length = 211
Score = 188 bits (478), Expect = 4e-60
Identities = 88/188 (46%), Positives = 123/188 (65%), Gaps = 7/188 (3%)
Query: 1 MKILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDC 60
+L LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DC
Sbjct: 13 ENLLDSDHRELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDC 71
Query: 61 RYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTL 120
RYPYEY+GGHI+ A+N+ ++S + S DKR +LIFHCE+S+ERGP +
Sbjct: 72 RYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSL---DKRVILIFHCEFSSERGPRM 128
Query: 121 SRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKS--RYL 177
R++R DRA N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K +
Sbjct: 129 CRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTF 188
Query: 178 RSEDRAHN 185
R + R+
Sbjct: 189 RLKTRSWA 196
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural
genomics consortium, SGC, Al alpha sandwich, kinase,
cytosol, hydrolase; 2.63A {Homo sapiens}
Length = 216
Score = 186 bits (473), Expect = 2e-59
Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 7/182 (3%)
Query: 8 DLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYK 67
+LIGDFSK LP V GKH DLK ++P+T+A L+ G+F +++K+ +IDCRYPYEY
Sbjct: 33 QGHLIGDFSKVCALPTV-SGKHQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYL 91
Query: 68 GGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSE 127
GGHIQGALN+Y++E L F++ + KR +++FHCE+S+ERGP + R LR E
Sbjct: 92 GGHIQGALNLYSQEELFNFFLKKPIVPLDT---QKRIIIVFHCEFSSERGPRMCRCLREE 148
Query: 128 DRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKS--RYLRSEDRAH 184
DR+ N YP L YPE+Y+L GGY+ F+ ++ +LCE Y PM +K+ RS+ +
Sbjct: 149 DRSLNQYPALYYPELYILKGGYRDFFPEYMELCEPQSYCPMHHQDHKTELLRCRSQSKVQ 208
Query: 185 NA 186
Sbjct: 209 EG 210
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase,
CDC25 phosphatase, rhodanese, C-MYC epitope,
oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Length = 152
Score = 117 bits (295), Expect = 2e-33
Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 12/147 (8%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES 90
+ I P+ L L+ D + K +IDCR + G I ++N+ T + + +
Sbjct: 3 NYTYIKPEELVELLDN--PDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKL 59
Query: 91 KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
K+ + +FHC S R P + + P +Y+L GG++
Sbjct: 60 AKTLFEE----KKELAVFHCAQSLVRAPKGANRFALAQKKLG----YVLPAVYVLRGGWE 111
Query: 151 QFYAQHQDLCEG-GYLPMADPGYKSRY 176
FY + D+ Y+ +
Sbjct: 112 AFYHMYGDVRPDLMYVKLGPEQKLISE 138
Score = 47.7 bits (113), Expect = 3e-07
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 174 SRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEG-GYLPMADPGYKS 227
+ + P +Y+L GG++ FY + D+ Y+ +
Sbjct: 86 ANRFALAQKKLG----YVLPAVYVLRGGWEAFYHMYGDVRPDLMYVKLGPEQKLI 136
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase,
rhodanese-like family, structural genomics, PSI-2,
protein structure initiative; HET: MSE; 1.80A
{Saccharomyces cerevisiae} PDB: 3fs5_A*
Length = 169
Score = 107 bits (269), Expect = 2e-29
Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 16 SKQFILPLVPDGKHHDLKNISPDTLARLIR-GEFNDVVDKYLIIDCRYPYEYKGGHIQGA 74
+ + ++K + P L R ++ G + + + ++D R +Y GGHI+
Sbjct: 14 RENLYFQGMDSYSITNVKYLDPTELHRWMQEGHTTTLREPFQVVDVR-GSDYMGGHIKDG 72
Query: 75 LNI-----YTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLS-RYLRSED 128
+ ++E + Q++ +IFHC S +RGP+ + LRS D
Sbjct: 73 WHYAYSRLKQDPEYLRELKHRLLEKQADG--RGALNVIFHCMLSQQRGPSAAMLLLRSLD 130
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQF---YAQHQDLCEG 162
A L +++L GG+ ++ Y + + G
Sbjct: 131 TAE-----LSRCRLWVLRGGFSRWQSVYGDDESVTAG 162
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle,
phosphorylation, plant, hydrolase; NMR {Arabidopsis
thaliana} SCOP: c.46.1.1
Length = 152
Score = 95.8 bits (238), Expect = 6e-25
Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 15/135 (11%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
+ I+ L L R IID R GHI G+L+ + K
Sbjct: 27 ISYITSTQLLPLHRR------PNIAIIDVRDEERNYDGHIAGSLHYA------SGSFDDK 74
Query: 92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ 151
+ DK + +FH S RGPT +R L + + +L G+
Sbjct: 75 ISHLVQNVKDKDTL-VFHSALSQVRGPTCARRLVNYLD--EKKEDTGIKNIMILERGFNG 131
Query: 152 FYAQHQDLCEGGYLP 166
+ A + +C +P
Sbjct: 132 WEASGKPVCRCAEVP 146
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase;
2.20A {Homo sapiens}
Length = 142
Score = 88.5 bits (219), Expect = 3e-22
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 9/139 (6%)
Query: 33 KNISPDTLARLIRGEFNDVV--DKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE-FIE 89
K I P+ LA+ + + +IIDCR EY HIQGA++I + + + +
Sbjct: 1 KIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQ 60
Query: 90 SKVHAQSNATCDKRRVLIFHCEYSA----ERGPTLSRYLRSEDRAHNAYPTL--DYPEMY 143
K+ +C + + + + H +L + E
Sbjct: 61 GKITVLDLISCREGKDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPL 120
Query: 144 LLNGGYKQFYAQHQDLCEG 162
+L GG F H++LC+
Sbjct: 121 VLKGGLSSFKQNHENLCDN 139
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like
domain, docking interaction, transfera hydrolase
complex; 2.71A {Homo sapiens}
Length = 158
Score = 86.3 bits (213), Expect = 3e-21
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 10/159 (6%)
Query: 23 LVPDGKHHDLKNISPDTLARLIRGEFNDVV--DKYLIIDCRYPYEYKGGHIQGALNIYTR 80
+ + +K I P+ LA+ + + +IIDCR EY HIQGA++I
Sbjct: 1 MGTPKQLASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCA 60
Query: 81 EHLVKEFIES-KVHAQSNATCDKRRVLIFHCEYSA----ERGPTLSRYLRSEDRAHNAYP 135
+ + + ++ K+ +C + + + + H
Sbjct: 61 DKISRRRLQQGKITVLDLISCREGKDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLE 120
Query: 136 TL--DYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGY 172
+L + E +L GG F H++LC+ L +
Sbjct: 121 SLKREGKEPLVLKGGLSSFKQNHENLCDNS-LEHHHHHH 158
>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex,
E3 ligase, protein ubiquitination, hydrolase, protease,
UBL conjugation pathway; 2.30A {Homo sapiens} SCOP:
c.46.1.4
Length = 157
Score = 77.4 bits (190), Expect = 7e-18
Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 16/146 (10%)
Query: 23 LVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI---YT 79
LVP G I+ L ++ + + +I+D R +Y+ I +L++
Sbjct: 14 LVPRGSGA----ITAKELYTMMTDKNISL----IIMDARRMQDYQDSCILHSLSVPEEAI 65
Query: 80 REHLVKEFIESKVHAQSNATCDKR---RVLIFHCEYSAERGPTLSRYLRSEDRA--HNAY 134
+ +IE+ + S T KR ++ +S+ + + LRS A
Sbjct: 66 SPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWES 125
Query: 135 PTLDYPEMYLLNGGYKQFYAQHQDLC 160
T+ E +L GGY+ + +
Sbjct: 126 KTVLRNEPLVLEGGYENWLLCYPQYT 151
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual
specificity phosphatase, nucleus, cytoplasm, rhodanese
domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Length = 153
Score = 76.8 bits (188), Expect = 9e-18
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 17/143 (11%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHA 94
I + L L+ +K L+ID R EY HI A+NI + + + + KV
Sbjct: 6 IVTERLVALLESGT----EKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLI 61
Query: 95 QSNATCDKR--------RVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLN 146
+ + ++ + + S + S + + ++LL
Sbjct: 62 TELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKL---EKSFNSVHLLA 118
Query: 147 GGYKQFYAQHQDLCEGG--YLPM 167
GG+ +F LCEG +P
Sbjct: 119 GGFAEFSRCFPGLCEGKSTLVPT 141
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo
sapiens} SCOP: c.46.1.1
Length = 154
Score = 76.3 bits (187), Expect = 1e-17
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 12/137 (8%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHA 94
+ L + + L++DCR Y+ HI+ A+N+ +++ + +
Sbjct: 18 KTVAWLNEQLELGNERL----LLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73
Query: 95 QSNATCD------KRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTL--DYPEMYLLN 146
++ T RR E + E L + + L
Sbjct: 74 RALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLE 133
Query: 147 GGYKQFYAQHQDLCEGG 163
GG+ +F A+ CE
Sbjct: 134 GGFSKFQAEFSLHCETN 150
>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4
Length = 157
Score = 74.0 bits (181), Expect = 1e-16
Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI---YTREHLVKEFIESK 91
I+ L ++ + + +I+D R +Y+ I +L++ + +IE+
Sbjct: 17 ITAKELYTMMTDKNISL----IIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAH 72
Query: 92 VHAQSNATCDKR---RVLIFHCEYSAERGPTLSRYLRSEDRA--HNAYPTLDYPEMYLLN 146
+ S T KR ++ +S+ + + LRS A T+ E +L
Sbjct: 73 LPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLE 132
Query: 147 GGYKQFYAQHQDLCEG 162
GGY+ + +
Sbjct: 133 GGYENWLLCYPQYTTN 148
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure,
atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A
{Saccharomyces cerevisiae}
Length = 139
Score = 56.7 bits (137), Expect = 2e-10
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 29/128 (22%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI-----YTREHLVK 85
++++ S + + R++ +VV ++D R P EY HI ++N+ L
Sbjct: 21 NIQSYSFEDMKRIVGKHDPNVV----LVDVREPSEYSIVHIPASINVPYRSHPDAFALDP 76
Query: 86 EFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEM 142
E ++ D + LIF+C S R A Y
Sbjct: 77 LEFEKQIGI---PKPDSAKELIFYC--------------ASGKRGGEAQKVASSHGYSNT 119
Query: 143 YLLNGGYK 150
L G
Sbjct: 120 SLYPGSMN 127
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: c.46.1.3
Length = 129
Score = 54.0 bits (130), Expect = 1e-09
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 25/122 (20%)
Query: 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI-YTREHLVKEFIESK 91
++S L+ + +D R P E+ GH GA+N+ Y +
Sbjct: 18 SSVSVTVAHDLLL-------AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTD 70
Query: 92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEMYLLNGG 148
Q ++ + +I C +S R+ A L + + + GG
Sbjct: 71 FLEQVSSHFGQSDNIIVGC--------------QSGGRSIKATTDLLHAGFTGVKDIVGG 116
Query: 149 YK 150
Y
Sbjct: 117 YS 118
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural
genomics, protein structure initiative, northeast
structural genomics consortium; 2.26A {Nostoc SP} PDB:
2kl3_A
Length = 141
Score = 49.3 bits (118), Expect = 8e-08
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 33/120 (27%)
Query: 35 ISPDTL-ARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVH 93
L +RL GE + I+D R Y GHI GA+ + + +
Sbjct: 2 SDAHVLKSRLEWGE-----PAFTILDVRDRSTYNDGHIMGAMAMPIED----------LV 46
Query: 94 AQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEMYLLNGGYK 150
+++++ +K R + + +++ A L + + L GG
Sbjct: 47 DRASSSLEKSRDIYVYG--------------AGDEQTSQAVNLLRSAGFEHVSELKGGLA 92
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol
metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB:
1gn0_A
Length = 108
Score = 47.6 bits (114), Expect = 1e-07
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 28/120 (23%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES 90
+ I+ + ++ + + +++D R P + GH A ++ T + L +
Sbjct: 3 QFECINVADAHQKLQEK------EAVLVDIRDPQSFAMGHAVQAFHL-TNDTLGAFMRD- 54
Query: 91 KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
D ++ C Y ++YL Y +Y ++GG++
Sbjct: 55 ---------NDFDTPVMVMC-YHGNSSKGAAQYLLQ----------QGYDVVYSIDGGFE 94
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP
binding protein, PSI, MCSG, STR genomics, protein
structure initiative; HET: PGE; 1.76A {Clostridium
difficile}
Length = 134
Score = 47.8 bits (113), Expect = 2e-07
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 18/131 (13%)
Query: 34 NISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI----- 88
+S + + ++ +DK + +D R EY+ HI A+N+ ++ +
Sbjct: 3 AMSVIKIEKALK------LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYK 56
Query: 89 -----ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYP--E 141
E+ + + + + E + + R R+ + L
Sbjct: 57 MQGKHEAIQKGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVN 116
Query: 142 MYLLNGGYKQF 152
+Y L GGYK +
Sbjct: 117 VYQLEGGYKAY 127
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp,
NSR437I, NESG, structural genomics, PSI-2, protein
structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Length = 106
Score = 46.9 bits (112), Expect = 3e-07
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 32/113 (28%)
Query: 41 ARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATC 100
+RL GE + I+D R Y GHI GA+ + + + +++++
Sbjct: 5 SRLEWGE-----PAFTILDVRDRSTYNDGHIMGAMAMPIED----------LVDRASSSL 49
Query: 101 DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEMYLLNGGYK 150
+K R + + +++ A L + + L GG
Sbjct: 50 EKSRDIYVYG--------------AGDEQTSQAVNLLRSAGFEHVSELKGGLA 88
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich,
structural genomics; 2.00A {Staphylococcus aureus
subsp} PDB: 3iwh_A 3mzz_A
Length = 103
Score = 46.0 bits (110), Expect = 5e-07
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
K+I+ D L + I+D R E G+I A I
Sbjct: 2 KSITTDELKNKLLES-----KPVQIVDVRTDEETAMGYIPNAKLI 41
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.40A {Thermoplasma volcanium GSS1}
Length = 108
Score = 45.7 bits (109), Expect = 7e-07
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
++I+ + + + Y ++D R P+E G I ++NI
Sbjct: 2 YYRSINAA--------DLYENIKAYTVLDVREPFELIFGSIANSINI 40
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase,
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus}
Length = 94
Score = 45.3 bits (108), Expect = 9e-07
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
++ + P+ L L+ + L++D R A +
Sbjct: 1 MRKVRPEELPALLE-------EGVLVVDVRPADRRSTPLPFAAEWV 39
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus saprophyticus subsp}
Length = 100
Score = 44.9 bits (107), Expect = 1e-06
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
++I+ L I + I+D R E G I GA I
Sbjct: 2 ESITVTELKEKILDA-----NPVNIVDVRTDQETAMGIIPGAETI 41
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics,
rohopseudom palustris, PSI-2, protein structure
initiative; 1.20A {Rhodopseudomonas palustris}
Length = 139
Score = 45.4 bits (108), Expect = 2e-06
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEY-KGGHIQGALNIYTREHLVKEFIES 90
++ ++ L + +DVV I+D R P E + G I G+ + TR L EF
Sbjct: 21 IETLTTADAIALHKSGASDVV----IVDIRDPREIERDGKIPGSFSC-TRGML--EFWID 73
Query: 91 KVHAQSNATCDKRRVLIFHC 110
+ + + +F+C
Sbjct: 74 PQSPYAKPIFQEDKKFVFYC 93
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4,
structural genomics, ubiquitin biology, structural
genomics consortium, SGC; 1.25A {Homo sapiens}
Length = 127
Score = 43.6 bits (103), Expect = 6e-06
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI------YTREHLVKEFI 88
+S RL+ +L++D R E + AL+I +K
Sbjct: 3 VSVTDYKRLLDSG-----AFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLK 57
Query: 89 ESKVHAQSNATCDKRRVLIFHC 110
E+ + + C
Sbjct: 58 EAIWEEKQGTQEGAAVPIYVIC 79
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide
detoxification, structural genomics, PSI, protein
structure initiative; 1.90A {Pseudomonas aeruginosa}
SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Length = 539
Score = 44.7 bits (105), Expect = 2e-05
Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 38/166 (22%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
+ + + + + ++D R + H A N+ L E I ++
Sbjct: 6 IAVRTFHDIRAALLAR-----RELALLDVREEDPFAQAHPLFAANL-PLSRLELE-IHAR 58
Query: 92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD---YPEMYLLNGG 148
V + + + + E A A L Y ++ LL+GG
Sbjct: 59 VP-------RRDTPITVYDD--------------GEGLAPVAAQRLHDLGYSDVALLDGG 97
Query: 149 YKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNAYPTLDYPE 194
+ G D S+ A P+L E
Sbjct: 98 LSGWRNA-------GGELFRDVNVPSKAFGELVEAERHTPSLAAEE 136
Score = 44.3 bits (104), Expect = 2e-05
Identities = 29/166 (17%), Positives = 45/166 (27%), Gaps = 38/166 (22%)
Query: 29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI 88
I P TLA + ++D Y HI GA + R L
Sbjct: 373 QPRADTIDPTTLADWLGE------PGTRVLDFTASANYAKRHIPGAAWV-LRSQL----- 420
Query: 89 ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTL---DYPEMYLL 145
Q+ + C S A A + ++LL
Sbjct: 421 -----KQALERLGTAERYVLTC--------------GSSLLARFAVAEVQALSGKPVFLL 461
Query: 146 NGGYKQFYAQHQDLCEGGYLPMADPG--YKSRYLRSE--DRAHNAY 187
+GG + A +G L + Y+ Y ++ A Y
Sbjct: 462 DGGTSAWVAAGLPTEDGESLLASPRIDRYRRPYEGTDNPREAMQGY 507
Score = 42.4 bits (99), Expect = 8e-05
Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 32/161 (19%)
Query: 29 HHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFI 88
+++ + + L+ D + +I+D R EY+ I G +++ E +
Sbjct: 126 ERHTPSLAAEEVQALL-----DARAEAVILDARRFDEYQTMSIPGGISVPGAE------L 174
Query: 89 ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLD----YPEMYL 144
+V + D R +I +C R+ +L +
Sbjct: 175 VLRVAELAP---DPRTRVIVNC--------------AGRTRSIIGTQSLLNAGIPNPVAA 217
Query: 145 LNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHN 185
L G + Q L G +R ++
Sbjct: 218 LRNGTIGWTLAGQQLEHGQTRRFGAISQDTRKAAAQRARAV 258
Score = 41.3 bits (96), Expect = 2e-04
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
++ + LA+ ++ ++D R P EY+ GH+ G+ +
Sbjct: 260 DRAGVERLDLAGLAQWQ----DEHDRTTYLLDVRTPEEYEAGHLPGSRST 305
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics,
unknown function, PSI-2, PR structure initiative; NMR
{Helicobacter pylori}
Length = 110
Score = 41.1 bits (97), Expect = 3e-05
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 53 DKYLIIDCRYPYEYKGGHIQGALNI 77
+ ++++D R EY+ H+ A I
Sbjct: 15 NDFIVVDVRELDEYEELHLPNATLI 39
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 43.4 bits (103), Expect = 4e-05
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 36/132 (27%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI---YTREHLVKEF 87
+ + + R++ + +ID R P E K G I+G++NI R+ L
Sbjct: 487 FVDTVQWHEIDRIVE-------NGGYLIDVREPNELKQGMIKGSINIPLDELRDRL---- 535
Query: 88 IESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNG 147
+ + C+ RG +R L Y ++ ++G
Sbjct: 536 ----------EEVPVDKDIYITCQ-LGMRGYVAARMLM-----EKGY------KVKNVDG 573
Query: 148 GYKQFYAQHQDL 159
G+K + +
Sbjct: 574 GFKLYGTVLPER 585
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 42.2 bits (100), Expect = 9e-05
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 29/109 (26%)
Query: 47 EFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYT---REHLVKEFIESKVHAQSNATCDKR 103
+ +++ + L++D R P E + G ++GA+NI R+ + E K
Sbjct: 479 QIDNLSEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRM-HEL-------------PKD 524
Query: 104 RVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQF 152
+ +I + RG R L +N Y L GGY+ +
Sbjct: 525 KEIIIFSQ-VGLRGNVAYRQLV-----NNGY------RARNLIGGYRTY 561
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.50A {Bacillus halodurans} PDB:
3o3w_A
Length = 144
Score = 40.5 bits (95), Expect = 9e-05
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
L+ I+ + +++D R YK HI A++I
Sbjct: 18 TDIADLSIDIK----KGYEGIIVVDVRDAEAYKECHIPTAISI 56
>2jtq_A Phage shock protein E; solution structure rhodanese, stress
response, transferase; NMR {Escherichia coli} PDB:
2jtr_A 2jts_A
Length = 85
Score = 38.7 bits (91), Expect = 1e-04
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 57 IIDCRYPYEYKGGHIQGALNI 77
ID R P +Y+ H+QGA+NI
Sbjct: 4 WIDVRVPEQYQQEHVQGAINI 24
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Length = 124
Score = 39.7 bits (93), Expect = 1e-04
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 38 DTLARLIRGEFNDVVDKYLIIDCR-YPYEYKGGHIQGALNI 77
LA + KY+++D R P + K I+GA+ +
Sbjct: 21 TVLADMQNAT-----GKYVVLDVRNAPAQVKKDQIKGAIAM 56
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase,
homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Length = 137
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH---IQGALNIYTREHLVKEF 87
D+ +SP +L++ +ID R P E K ++ ++ +
Sbjct: 21 DMVMLSPKDAYKLLQEN-----PDITLIDVRDPDELKAMGKPDVKNYKHMS------RGK 69
Query: 88 IESKVHAQSNATCDKRRVLIFHC 110
+E + + D + ++ C
Sbjct: 70 LEPLLA---KSGLDPEKPVVVFC 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 3e-04
Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 47/194 (24%)
Query: 1 MKILADL-DLNLIGDFSKQFILPLVPDGKHHDL---KNISPDTLARLIRGEFNDVVDKYL 56
M ++ L +L+ K+ + + + + + L R +VD Y
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI------PSIYLELKVKLENEYALHR----SIVDHYN 454
Query: 57 IIDCR------------YPYEYKGGHIQGA-----LNIYTREHLVKEFIESKVHAQSNAT 99
I Y Y + G H++ + ++ L F+E K+ S A
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 100 CDKRRV------LIFHCEYSAERGPTLSRYLRS-EDRAHNA------YPTLDYPEMYLLN 146
+ L F+ Y + P R + + D D + L+
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 147 ---GGYKQFYAQHQ 157
+++ + Q Q
Sbjct: 575 EDEAIFEEAHKQVQ 588
Score = 35.6 bits (81), Expect = 0.014
Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 41/139 (29%)
Query: 2 KILADLDLNLIGDFSKQFILPLVPDGKHHDLKNI--SPDTLARLIRGEFNDVVDKYLIID 59
+ + D + D K + ++ +I S D ++ +
Sbjct: 28 AFVDNFDCKDVQDMPKSIL-------SKEEIDHIIMSKDAVSGT-----------LRLFW 69
Query: 60 CRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPT 119
K E +V++F+E + E T
Sbjct: 70 T---LLSKQ------------EEMVQKFVEEVLRINYKFLMSP-----IKTEQRQPSMMT 109
Query: 120 LSRYLRSEDRAHNAYPTLD 138
Y+ DR +N
Sbjct: 110 -RMYIEQRDRLYNDNQVFA 127
Score = 33.3 bits (75), Expect = 0.073
Identities = 34/237 (14%), Positives = 68/237 (28%), Gaps = 46/237 (19%)
Query: 7 LDLNLIGDFSKQFILPLVPDGKHH--DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPY 64
L++I + + DG + K+++ D L +I ++ P
Sbjct: 328 RRLSIIAE--------SIRDGLATWDNWKHVNCDKLTTIIE----------SSLNVLEPA 369
Query: 65 EYKGGHIQGALNIYTREHLVKEFIESKVHA---QSNATCDKRRVLIFHCEYS-AERGPTL 120
EY+ + L+++ I + + + D V+ +YS E+ P
Sbjct: 370 EYRKMFDR--LSVF-PPS-AH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 121 SRYLRSEDRAHNAYPTLDY----PEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRY 176
S + Y L+ Y L+ Y + +P Y +
Sbjct: 424 STI-----SIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 177 LRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSDFQTFR 233
+ H+ M L + F Q + A + Q +
Sbjct: 477 I-----GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 38.5 bits (89), Expect = 5e-04
Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 26/127 (20%)
Query: 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVK------- 85
+I+P ++ + +++D R E++ + ++ V+
Sbjct: 5 GDITPLQAWEMLSDN-----PRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGT 59
Query: 86 ---EFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEM 142
F+ R +IF C S R +
Sbjct: 60 HNDNFLAELRDRIPADADQHERPVIFLC-RSGNRSIGAAEVATE----------AGITPA 108
Query: 143 YLLNGGY 149
Y + G+
Sbjct: 109 YNVLDGF 115
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 36.9 bits (85), Expect = 0.004
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIY 78
N+SPD + + ++D R E+ GGH+ A +I
Sbjct: 369 DVASYANVSPDEVRGALAQ------QGLWLLDVRNVDEWAGGHLPQAHHIP 413
Score = 31.5 bits (71), Expect = 0.26
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 27 GKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKE 86
L + L + +++D R + H+ G+LNI + V
Sbjct: 259 VGPRLLAELGAPERVDLPPERVRAWREGGVVLDVRPADAFAKRHLAGSLNIPWNKSFV-T 317
Query: 87 FIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSR 122
+ + D+ L+ + + L
Sbjct: 318 WAGWLLP------ADRPIHLLAADAIAPDVIRALRS 347
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism,
thiosulfate:cyanide sulfurtransferase; 1.8A
{Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB:
1h4k_X 1h4m_X
Length = 271
Score = 36.4 bits (85), Expect = 0.005
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNI 77
I P L + +++ ++D Y GHI GA +
Sbjct: 11 IEPADLQARLSAP--ELI----LVDLTSAARYAEGHIPGARFV 47
Score = 32.5 bits (75), Expect = 0.091
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 56 LIIDCRYPYEYKG--------GHIQGALNIYTREHL 83
I D R P EY+G GHI GA+N +
Sbjct: 164 AIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAM 199
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains;
HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A*
3ipp_A
Length = 423
Score = 36.2 bits (84), Expect = 0.008
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 35 ISPDTLARLIRGEFNDVVD--KYLIIDCRY--PYEYKGGHIQGALNIYTREHL 83
+ P L L +G+ + +I+ + P Y HI GA I T E
Sbjct: 126 VYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVE 178
Score = 33.5 bits (77), Expect = 0.053
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 9/33 (27%)
Query: 54 KYLIIDCRYPYEYKG---------GHIQGALNI 77
ID R Y G GH ALN+
Sbjct: 19 NGKAIDTRPSAFYNGWPQTLNGPSGHELAALNL 51
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 36.2 bits (83), Expect = 0.009
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 53 DKYLIIDCRYPYEYKGGHIQGALNIY 78
++ I+D R E+ GH+ A+++
Sbjct: 386 NESHILDVRNDNEWNNGHLSQAVHVP 411
Score = 27.3 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 57 IIDCRYPYEYKGGHIQGALNIYTREHL 83
D R Y GGHI+G +NI ++
Sbjct: 299 TFDLRSKEAYHGGHIEGTINIPYDKNF 325
>1vee_A Proline-rich protein family; hypothetical protein, structural
genomics, rhodanese domain, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} PDB: 2dcq_A
Length = 134
Score = 33.8 bits (77), Expect = 0.017
Identities = 8/125 (6%), Positives = 26/125 (20%), Gaps = 30/125 (24%)
Query: 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLV----KEFI 88
+ S + + D ++D R +++ + + ++
Sbjct: 5 SSGSAKNAYTKLGTD-----DNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKP 59
Query: 89 ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGG 148
+ L + + + + G
Sbjct: 60 GFLKKLSLKFKDPENTTLYILD--------------KFDGNSELVA-------ELVALNG 98
Query: 149 YKQFY 153
+K Y
Sbjct: 99 FKSAY 103
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious
disease, transferase structural genomics; 2.10A
{Mycobacterium tuberculosis} PDB: 3p3a_A
Length = 318
Score = 34.5 bits (80), Expect = 0.022
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPY-EYKGGHIQGALNI 77
++ D L+ + + I++ Y GHI GA+ I
Sbjct: 42 VTADWLSAHMGAP--GLA----IVESDEDVLLYDVGHIPGAVKI 79
Score = 32.6 bits (75), Expect = 0.11
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 16/63 (25%)
Query: 37 PDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG----------------GHIQGALNIYTR 80
D R R + ++ +ID R P EY G GHI A++I
Sbjct: 175 NDAPIRAFRDDVLAILGAQPLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWG 234
Query: 81 EHL 83
+
Sbjct: 235 KAA 237
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics,
NPPSFA, national Pro protein structural and functional
analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Length = 230
Score = 34.1 bits (79), Expect = 0.026
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 48 FNDVVDKYLIIDCRYPYEYKG----------GHIQGALNIYTREHL 83
++ L++D R P E++G G I G+ N L
Sbjct: 125 ADEAARHPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFL 170
Score = 33.3 bits (77), Expect = 0.041
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 56 LIIDCRYPYEYKGGHIQGALNI 77
+++D R Y+ GH+ GA ++
Sbjct: 8 VLVDTRPRPAYEAGHLPGARHL 29
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT
initiative, RSGI, structural genomics, transferase;
1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Length = 285
Score = 34.1 bits (79), Expect = 0.029
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPY-EYKGGHIQGALNI 77
+S D + + V +++ Y GHI GA I
Sbjct: 10 VSTDWVQEHLEDP--KVR----VLEVDEDILLYDTGHIPGAQKI 47
Score = 29.1 bits (66), Expect = 1.2
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 20/62 (32%)
Query: 38 DTLARLIRGEFNDVVDKYLIIDCRYPYEYKG----------------GHIQGALNIYTRE 81
D L +I+ + ++D R P EY+G GHI GA NI +
Sbjct: 152 DVLEHIIKVKEGKGA----LVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAK 207
Query: 82 HL 83
+
Sbjct: 208 AV 209
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase,
structural genomics, PSI, structure initiative; 1.90A
{Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Length = 277
Score = 33.7 bits (78), Expect = 0.042
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPY-EYKGGHIQGALNI 77
+S D + VV ++ Y HI GA+ +
Sbjct: 8 VSADWAESNLHAP--KVV----FVEVDEDTSAYDRDHIAGAIKL 45
Score = 31.4 bits (72), Expect = 0.20
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 16/63 (25%)
Query: 37 PDTLARLIRGEFNDVVDKYLIIDCRYPYEYKG----------------GHIQGALNIYTR 80
PD R R E ++ +ID R P E+ G GHI GA+N+
Sbjct: 140 PDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWS 199
Query: 81 EHL 83
Sbjct: 200 RAA 202
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl
isomerase, catalytic triad, serine protease, leishmania
pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP:
c.46.1.2 c.46.1.2 d.26.1.3
Length = 373
Score = 33.9 bits (78), Expect = 0.047
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 16/49 (32%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRY--------PYEYKGGHIQGAL 75
+ P +A + + I+DCRY +Y H++ A+
Sbjct: 16 LDPSEVADHL----AEYR----IVDCRYSLKIKDHGSIQYAKEHVKSAI 56
Score = 28.1 bits (63), Expect = 2.8
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 11/45 (24%)
Query: 53 DKYLIIDCRYPYEYKG-----------GHIQGALNIYTREHLVKE 86
+ +I D R + GHI+GA N+ HLV
Sbjct: 173 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTR 217
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium; 1.79A {Legionella pneumophila subsp}
Length = 265
Score = 33.0 bits (76), Expect = 0.074
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 20 ILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALN 76
+ P G + +SP+ + I+ +V+ ++D R YEY+ G + A+N
Sbjct: 114 VDPSYNAGTY-----LSPEEWHQFIQDP--NVI----LLDTRNDYEYELGTFKNAIN 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.13
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 58/159 (36%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGAL-NIYTREHLVKEFI-- 88
+ N++ + + + + N +L P G ++ +L N ++LV +
Sbjct: 341 ISNLTQEQVQDYVN-KTN----SHL------P---AGKQVEISLVN--GAKNLV---VSG 381
Query: 89 --ES---------KVHA-----QSNATCDKRRVLI----------FHCEYSAERGPTLSR 122
+S K A QS +R++ FH +++
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 123 YLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE 161
L + + NA + P +Y G DL
Sbjct: 442 DLVKNNVSFNA-KDIQIP-VYDTFDG--------SDLRV 470
Score = 30.0 bits (67), Expect = 0.87
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 42/139 (30%)
Query: 113 SAERGPTLSRYLRSE------DRA--H--NAYP------TLDYP-EMYLLNGGYKQFYAQ 155
S E+G + Y S+ +RA H + Y ++ P + + GG K
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG---- 1681
Query: 156 HQDLCEGGYLPM-----ADPGYKSRYLRSE-DRAHNAYPTLDYPEMYLLNGGYKQF---- 205
+ + E Y M D K+ + E + +Y T + LL+ QF
Sbjct: 1682 -KRIREN-YSAMIFETIVDGKLKTEKIFKEINEHSTSY-TFRSEKG-LLS--ATQFTQPA 1735
Query: 206 -----YAQHQDLCEGGYLP 219
A +DL G +P
Sbjct: 1736 LTLMEKAAFEDLKSKGLIP 1754
Score = 30.0 bits (67), Expect = 1.0
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 18/82 (21%)
Query: 129 RAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGY---LPM-ADPGYKSRYLRSEDRAH 184
R + AYP P + +D E PM + ++
Sbjct: 309 RCYEAYPNTSLPP------------SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 185 NAY-PTLDYPEMYLLNGGYKQF 205
N++ P E+ L+N G K
Sbjct: 357 NSHLPAGKQVEISLVN-GAKNL 377
Score = 27.7 bits (61), Expect = 4.4
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 2 KILADLDLNLIGDFSKQFILPL--VPDGKHHDLKNISPDTLARLIRGEFNDVVD 53
I DL N + +K +P+ DG DL+ +S R++ V
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGS--DLRVLSGSISERIVDCIIRLPVK 489
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase;
1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A
1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Length = 296
Score = 30.7 bits (70), Expect = 0.42
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 10/49 (20%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYP--------YEYKGGHIQGAL 75
+S LA +R ++D + EY H+ GA
Sbjct: 10 VSTKWLAESVRAGKVG--PGLRVLDASWYSPGTREARKEYLERHVPGAS 56
Score = 28.4 bits (64), Expect = 2.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 54 KYLIIDCRYPYEYKG------------GHIQGALNIYTREHL 83
++ ++D R Y G GHI+G++N+ L
Sbjct: 175 RFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFL 216
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics,
structural genomics consortium, SGC, RH fold; 2.50A
{Homo sapiens}
Length = 302
Score = 29.5 bits (67), Expect = 0.97
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 15/52 (28%)
Query: 35 ISPDTLARLIR--GEFNDVVDKYLIIDCRYP---------YEYKGGHIQGAL 75
+S +A +R + ++D + E++ HI GA
Sbjct: 24 VSAQWVAEALRAPRAGQPLQ----LLDASWYLPKLGRDARREFEERHIPGAA 71
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A
{Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Length = 280
Score = 29.5 bits (67), Expect = 0.98
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 16/51 (31%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRY----------PYEYKGGHIQGAL 75
+ D LA I ++ IID R EY GHI GA+
Sbjct: 6 VGADWLAEHIDDP--EIQ----IIDARMASPGQEDRNVAQEYLNGHIPGAV 50
Score = 28.3 bits (64), Expect = 2.3
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 54 KYLIIDCRYPYEYKG-----------GHIQGALNIYTREHL 83
IID R + GHI GALN+ E +
Sbjct: 167 TAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELV 207
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 26.8 bits (59), Expect = 8.2
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 209 HQDLCEGGY-LPMADPGYKSDFQTFRSKSKTWS 240
H D GG+ P P DF+ R KS + S
Sbjct: 227 HIDAASGGFLAPFVAPDIVWDFRLPRVKSISAS 259
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 26.4 bits (58), Expect = 9.6
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 31 DLKNISPDTLARLIRGEFNDVVD-KYLIIDC 60
D+ IS + LI + + +I+D
Sbjct: 238 DILEISYADIDTLIG-NIQGMDNYDEIIVDL 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.433
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,090,546
Number of extensions: 239408
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 94
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)