RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1013
(258 letters)
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
Length = 161
Score = 165 bits (419), Expect = 2e-52
Identities = 76/164 (46%), Positives = 111/164 (67%), Gaps = 6/164 (3%)
Query: 11 LIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGH 70
LIGDFSK ++ V GKH DLK ISP+ +A ++ G+F +++ +++IIDCRYPYEY+GGH
Sbjct: 2 LIGDFSKGYLFHTV-AGKHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGH 60
Query: 71 IQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRA 130
I+GA+N++ E + ++ + T KR +++FHCE+S+ERGP + RY+R DR
Sbjct: 61 IKGAVNLHMEEEVEDFLLKKPI----VPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRL 116
Query: 131 HNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYK 173
N YP L YPE+Y+L GGYK+F+ + Q CE Y PM +K
Sbjct: 117 GNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFK 160
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 155 bits (393), Expect = 3e-48
Identities = 85/170 (50%), Positives = 116/170 (68%), Gaps = 5/170 (2%)
Query: 10 NLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGG 69
LIGD+SK F+L V DGKH DLK ISP+T+ L+ G+F+++VDK++I+DCRYPYEY+GG
Sbjct: 1 ELIGDYSKAFLLQTV-DGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGG 59
Query: 70 HIQGALNIYTREHLVKEFIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDR 129
HI+ A+N+ ++S + S DKR +LIFHCE+S+ERGP + R++R DR
Sbjct: 60 HIKTAVNLPLERDAESFLLKSPIAPCS---LDKRVILIFHCEFSSERGPRMCRFIRERDR 116
Query: 130 AHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCE-GGYLPMADPGYKSRYLR 178
A N YP+L YPEMY+L GGYK+F+ QH + CE Y PM +K
Sbjct: 117 AVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKT 166
>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase
8, USP8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 85.7 bits (211), Expect = 1e-21
Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 12/135 (8%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYT---REHLVKEFIESK 91
I+ L ++ + ++ I+D R +Y+ I +L++ + +IE+
Sbjct: 3 ITAKELYTMMTDKNISLI----IMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAH 58
Query: 92 VHAQSN---ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNA--YPTLDYPEMYLLN 146
+ S ++ +S+ + + LRS A T+ E +L
Sbjct: 59 LPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLE 118
Query: 147 GGYKQFYAQHQDLCE 161
GGY+ + +
Sbjct: 119 GGYENWLLCYPQYTT 133
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 81.1 bits (199), Expect = 1e-19
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 12/138 (8%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEF------I 88
+ L + + L++DCR Y+ HI+ A+N+ +++ +
Sbjct: 18 KTVAWLNEQLELGNERL----LLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73
Query: 89 ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTL--DYPEMYLLN 146
+ + RR E + E L + + L
Sbjct: 74 RALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLE 133
Query: 147 GGYKQFYAQHQDLCEGGY 164
GG+ +F A+ CE
Sbjct: 134 GGFSKFQAEFSLHCETNL 151
>d1tq1a_ c.46.1.3 (A:) Thiosulfate
sulfurtransferase/Senescence-associated protein {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 119
Score = 50.3 bits (119), Expect = 1e-08
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 17/118 (14%)
Query: 33 KNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKV 92
++S L+ + +D R P E+ GH GA+N+ ++
Sbjct: 8 SSVSVTVAHDLLL-------AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTD 60
Query: 93 HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
+ ++ + I S R + L + + + GGY
Sbjct: 61 FLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLH----------AGFTGVKDIVGGYS 108
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli
[TaxId: 562]}
Length = 108
Score = 40.1 bits (93), Expect = 2e-05
Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 28/125 (22%)
Query: 32 LKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESK 91
+ I+ + ++ + + +++D R P + GH A ++
Sbjct: 4 FECINVADAHQKLQEK------EAVLVDIRDPQSFAMGHAVQAFHLTNDT---------- 47
Query: 92 VHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ 151
D ++ C Y ++YL Y +Y ++GG++
Sbjct: 48 -LGAFMRDNDFDTPVMVMC-YHGNSSKGAAQYLLQ----------QGYDVVYSIDGGFEA 95
Query: 152 FYAQH 156
+ Q
Sbjct: 96 WQRQF 100
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase
{Leishmania major [TaxId: 5664]}
Length = 156
Score = 39.3 bits (91), Expect = 1e-04
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 20/138 (14%)
Query: 29 HHDLKN-ISPDTLARLIRGEFNDVVDKYLIIDCRY--------PYEYKGGHIQGALNIYT 79
H K + P +A + + I+DCRY +Y H++ A+
Sbjct: 3 KHPGKVFLDPSEVADHL----AEYR----IVDCRYSLKIKDHGSIQYAKEHVKSAIRADV 54
Query: 80 REHLVKEFIESKV--HAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTL 137
+L K S A + R +L
Sbjct: 55 DTNLSKLVPTSTARHPLPPCAEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSL 114
Query: 138 DYPEMYLLNGGYKQFYAQ 155
+ Y++NGG++ A
Sbjct: 115 GA-DAYVINGGFQACKAA 131
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 38.7 bits (89), Expect = 1e-04
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREH 82
+++ + + L+ D + +I+D R EY+ I G +++ E
Sbjct: 22 HTPSLAAEEVQALL-----DARAEAVILDARRFDEYQTMSIPGGISVPGAEL 68
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 130
Score = 37.7 bits (86), Expect = 2e-04
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALN 76
++ + LA+ ++D R P EY+ GH+ G+ +
Sbjct: 21 GVERLDLAGLAQWQDEHDRTTY----LLDVRTPEEYEAGHLPGSRS 62
>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus
[TaxId: 274]}
Length = 143
Score = 36.8 bits (84), Expect = 6e-04
Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 23/128 (17%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPY-EYKGGHIQGALNIYTREHLVKE------F 87
+S D + + D K +++ Y GHI GA I +
Sbjct: 9 VSTDWVQEHL----ED--PKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFIS 62
Query: 88 IESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNG 147
E ++ + + A + + ++ L+NG
Sbjct: 63 EEEFAKLMERLGISNDTTVVLYG----------DKNNWWAAYAFWFFKYNGHKDVRLMNG 112
Query: 148 GYKQFYAQ 155
G +++ +
Sbjct: 113 GRQKWVEE 120
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter
vinelandii [TaxId: 354]}
Length = 135
Score = 35.8 bits (81), Expect = 0.002
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 8/121 (6%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVHA 94
I P L + + +++D Y GHI GA + + + + +
Sbjct: 11 IEPADLQARLSAP------ELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQP 64
Query: 95 QSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQFYA 154
A R + + LNGG + A
Sbjct: 65 PREQLESLFG--ELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLA 122
Query: 155 Q 155
+
Sbjct: 123 E 123
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId:
9913]}
Length = 149
Score = 34.5 bits (78), Expect = 0.004
Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 10/125 (8%)
Query: 35 ISPDTLARLIRGEFNDVVDKYLIIDCRYPY--------EYKGGHIQGALNIYTREHLVKE 86
+S LA +R V ++D + EY H+ GA E K
Sbjct: 10 VSTKWLAESVRA--GKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKA 67
Query: 87 FIESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLN 146
+ D L + R + + + +LN
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 147 GGYKQ 151
GG++
Sbjct: 128 GGFRN 132
>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 101
Score = 31.5 bits (70), Expect = 0.024
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 27/117 (23%)
Query: 35 ISPDTL-ARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIESKVH 93
+ + A L+ + ++D R + H A N+ ++
Sbjct: 4 RTFHDIRAALLARR------ELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRR 57
Query: 94 AQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
I + P A L Y ++ LL+GG
Sbjct: 58 DTP----------ITVYDDGEGLAP----------VAAQRLHDLGYSDVALLDGGLS 94
>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase
{Leishmania major [TaxId: 5664]}
Length = 139
Score = 32.1 bits (72), Expect = 0.024
Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 17/125 (13%)
Query: 49 NDVVDKYLIIDCRYPYEYKG-----------GHIQGALNIYTREHLVKEFIESKVHAQSN 97
+++ + +I D R + GHI+GA N+ HLV +S
Sbjct: 7 DEIPPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTR--GDGKVLRSE 64
Query: 98 ATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPT---LDYPEMYLLNGGYKQFYA 154
+ + A + S A L YL G + + Y+
Sbjct: 65 EEIRHNIMTVVQGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE-YS 123
Query: 155 QHQDL 159
Sbjct: 124 GLFRP 128
>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 132
Score = 29.7 bits (65), Expect = 0.18
Identities = 8/93 (8%), Positives = 24/93 (25%)
Query: 127 EDRAHNAYPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLPMADPGYKSRYLRSEDRAHNA 186
+ + +L Y + + ++ + R +
Sbjct: 34 RNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEK 93
Query: 187 YPTLDYPEMYLLNGGYKQFYAQHQDLCEGGYLP 219
+ +L G+ + A + +C +P
Sbjct: 94 KEDTGIKNIMILERGFNGWEASGKPVCRCAEVP 126
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide
dehydrogenase, Sud) {Wolinella succinogenes [TaxId:
844]}
Length = 137
Score = 27.9 bits (61), Expect = 0.62
Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 22/120 (18%)
Query: 31 DLKNISPDTLARLIRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEFIES 90
D+ +SP +L++ + +ID R P E K N
Sbjct: 21 DMVMLSPKDAYKLLQENPD-----ITLIDVRDPDELKAMGKPDVKNYKHMSR----GKLE 71
Query: 91 KVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYK 150
+ A+S +K V+ A A + +Y GG
Sbjct: 72 PLLAKSGLDPEKPVVVFCKTAARAA-------------LAGKTLREYGFKTIYNSEGGMD 118
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 26.9 bits (58), Expect = 1.3
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 54 KYLIIDCRYPYEYKG-----------GHIQGALNIYTREHLVKEFIESKVHAQSNATC-- 100
IID R + GHI GALN+ E + + +++ +
Sbjct: 19 TAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRG 78
Query: 101 -DKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYPTLDYPEMYLLNGGYKQ 151
+ +I C A TLD P + L +G + +
Sbjct: 79 VSYDKPIIVSCGSGVTAA-----------VVLLALATLDVPNVKLYDGAWSE 119
>d1dbxa_ d.116.1.1 (A:) Hypothetical protein HI1434 (YbaK homologue)
{Haemophilus influenzae [TaxId: 727]}
Length = 157
Score = 27.3 bits (60), Expect = 1.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 27 GKHHDLKNISPDTLARLIRGEFNDVVD 53
GK I+P LA+++ EF D+VD
Sbjct: 130 GKRGLSVEIAPQDLAKVLGAEFTDIVD 156
>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum
pernix [TaxId: 56636]}
Length = 150
Score = 26.9 bits (59), Expect = 1.8
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 1 MKILADLDLNLIGDFSKQFILPLVPDGKHHDLKNISPDTLARLIRGEFNDVVD 53
+ ++ D L G+ + L SP L DV +
Sbjct: 105 IVLVVDRILLSRKKV-------YGGGGRENALLEFSPRELVEATGAVVADVSE 150
>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain
(RecB), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 276
Score = 26.2 bits (57), Expect = 3.5
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 28 KHHDLKNISPDTLARLIRGEFNDVVDKYLIIDCR-YPYEYKGGHIQGALNIYTREHLVKE 86
+ L P +RG +D + R Y +YK + + YT++ +
Sbjct: 144 QFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 203
Query: 87 FIESKVHAQ 95
+ Q
Sbjct: 204 MQAHRYDLQ 212
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 24.6 bits (54), Expect = 7.3
Identities = 6/21 (28%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 69 GHIQGALNIYTREHLVKEFIE 89
G I+G +++ + E V +F+
Sbjct: 42 GEIRGIIDVSSEEE-VLKFVN 61
>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 162
Score = 24.9 bits (54), Expect = 7.5
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 12/139 (8%)
Query: 32 LKNISPDTLARL----IRGEFNDVVDKYLIIDCRYPYEYKGGHIQGALNIYTREHLVKEF 87
P LA++ +R +F V ++ + AL + + +
Sbjct: 25 NLTKDPKELAKIAFIEVRPDFARNVRPGDVVVAGKNFGIGSSRESAALAL--KALGIAGV 82
Query: 88 IESKVHAQSNATCDKRRVLIFHCEYSA-ERGPTLS-----RYLRSEDRAHNAYPTLDYPE 141
I + + + + G ++ +R D P D+
Sbjct: 83 IAESFGRIFYRNAINIGIPLLLGKTEGLKDGDLVTVNWETGEVRKGDEILMFEPLEDFLL 142
Query: 142 MYLLNGGYKQFYAQHQDLC 160
+ GG ++ + DLC
Sbjct: 143 EIVREGGILEYIRRRGDLC 161
>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus
thermophilus [TaxId: 274]}
Length = 141
Score = 24.8 bits (53), Expect = 7.7
Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 39/144 (27%)
Query: 38 DTLARLIRGEFNDVVDKYLIIDCRYPYEYKG----------------GHIQGALNIYTRE 81
D L +I+ + ++D R P EY+G GHI GA NI +
Sbjct: 8 DVLEHIIKVKEGKGA----LVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAK 63
Query: 82 HLVKEFI------ESKVHAQSNATCDKRRVLIFHCEYSAERGPTLSRYLRSEDRAHNAYP 135
+ + ++ T DK V+ RS
Sbjct: 64 AVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAE------------RSSHSWFVLKY 111
Query: 136 TLDYPEMYLLNGGYKQFYAQHQDL 159
L YP + +G + + + +
Sbjct: 112 LLGYPHVKNYDGSWTE-WGNLVGV 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.433
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,009,283
Number of extensions: 47605
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 28
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)