BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10133
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 183/312 (58%), Gaps = 6/312 (1%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
++LGSDTGGS R PAS+CGV+G KPTYG VSR+GL+ +S+D G+ R ED A V
Sbjct: 162 VSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLE 221
Query: 81 VIAGSDHRDPTTVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMA 139
VI+G D +D T+ + + + + + ++ L IG+P+E+ + P+V + +E+ +K +
Sbjct: 222 VISGWDEKDSTSAKVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELE 281
Query: 140 KAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETR 199
K G ++K+VSLPH + SI TY I+ E +SN+ARY G+ YG+R ++ A TR
Sbjct: 282 KEGFEIKEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYRAK-EYKDIFEMYARTR 340
Query: 200 KDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHXXXXXXXXX 259
+ FG VK RI+ G + L Y+ Y+LKA KVR LI DFL+ + V
Sbjct: 341 DEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEE-VDVIASPTTPT 399
Query: 260 XXXXXSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDG 319
+ +L+N + + D T PANLAG PAIS+PI + LPV QL+ ++ +
Sbjct: 400 LPFKFGE--RLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIGKHWDET 456
Query: 320 LLLNLAHWLESQ 331
LL +++ E +
Sbjct: 457 TLLQISYLWEQK 468
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 174/314 (55%), Gaps = 7/314 (2%)
Query: 22 ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNV 81
ALGSDTGGS R PAS CGVVG+KPTYG VSR+GL+ +S+D G +T+TV D A + +
Sbjct: 157 ALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEI 216
Query: 82 IAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKA 141
I+G D D TTV + + ++ + +S + VPEE I V + +E LKL+ +
Sbjct: 217 ISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERL 276
Query: 142 GAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKD 201
GA+V++V +PH + S+ TY ++ E +SN+AR+ G+ YG R+ ++ +TR
Sbjct: 277 GAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKE--KGLREMYMKTRNV 334
Query: 202 AFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHXXXXXXXXXXX 261
FG V+ RI+ G + L YE YF KA+KVR I+ + V +
Sbjct: 335 GFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEV----LSQYDAILTPTSP 390
Query: 262 XXXSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLL 321
+ ++ + + D T PANLAG PAISVP S+ LPV +Q++ F DG +
Sbjct: 391 VTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFSN-NLPVGVQVIGRRFADGKV 449
Query: 322 LNLAHWLESQVEFN 335
+A +E +N
Sbjct: 450 FRIARAIEKNSPYN 463
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 169/313 (53%), Gaps = 7/313 (2%)
Query: 23 LGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVI 82
LGSDTGGS R PAS CGVVG+KPTYG VSR+GL+ +S+D G +T+TV D A + +I
Sbjct: 159 LGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEII 218
Query: 83 AGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAG 142
+G D D TTV + + ++ + +S VPEE I V + +E LKL+ + G
Sbjct: 219 SGRDENDATTVNRKVDFLSEIEEGVSGXKFAVPEEIYEHDIEEGVSERFEEALKLLERLG 278
Query: 143 AQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDA 202
A+V++V +PH + S+ TY ++ E +SN+AR+ G+ YG R+ + +TR
Sbjct: 279 AKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKE--KGLREXYXKTRNVG 336
Query: 203 FGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHXXXXXXXXXXXX 262
FG V+ RI G + L YE YF KA KVR I+ + V +
Sbjct: 337 FGEEVRRRIXIGTFTLSAAYYEAYFNKAXKVRRKISDELNEV----LSQYDAILTPTSPV 392
Query: 263 XXSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLL 322
+ ++ + + D T PANLAG PAISVP S+ LPV +Q++ F DG +
Sbjct: 393 TAFKIGEIKDPLTYYLXDIFTIPANLAGLPAISVPFGFSN-NLPVGVQVIGRRFADGKVF 451
Query: 323 NLAHWLESQVEFN 335
+A +E +N
Sbjct: 452 RIARAIEKNSPYN 464
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 175/312 (56%), Gaps = 6/312 (1%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
++LGSDTGGS R PA+YCGVVG KPTYG VSR GL+ +S+D G LTR V+D A V
Sbjct: 169 LSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLE 228
Query: 81 VIAGSDHRDPTTVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMA 139
I+G+D D T+ + T + D+ L + +P+EY E ++ +V + ++ ++ +
Sbjct: 229 AISGADVNDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLK 288
Query: 140 KAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETR 199
GA V++VSLP+T+ I +Y ++ E +SN++R+ G+ YG+ + +S ++L +R
Sbjct: 289 SLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYH-SKEAHSLEELYKMSR 347
Query: 200 KDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHXXXXXXXXX 259
+ FG VK RI G + L Y+ Y+ K+ KVR+LI DF +V+ +
Sbjct: 348 SEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFE---NYDVVVGPTA 404
Query: 260 XXXXXSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDG 319
+ ++D+ D T P NLAG P ISVP S+ + P+ +Q + F +
Sbjct: 405 PTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGR-PIGLQFIGKPFDEK 463
Query: 320 LLLNLAHWLESQ 331
L +A+ E+Q
Sbjct: 464 TLYRVAYQYETQ 475
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 151/309 (48%), Gaps = 17/309 (5%)
Query: 25 SDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAG 84
SDTGGS R PA++CGV G KPTYG VSR GLI +S+D G + R+V D A + + AG
Sbjct: 160 SDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAG 219
Query: 85 SDHRDPTTVQKNISPVTLDQLD--LSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAG 142
D D T++ ++ P + L+ L L +GV E + + SP V E LK+ + G
Sbjct: 220 PDPLDATSL--DLPPRFQEALEGPLPPLRLGVVREALAGN-SPGVERALEEALKVFRELG 276
Query: 143 AQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDA 202
V++VS P ++ Y IL E +SN+ARY G YG R + + + E +
Sbjct: 277 LSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRR---AAGEEVEGMMEATRAL 333
Query: 203 FGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHXXXXXXXXXXXX 262
FGL VK R+L G + L YE Y+ +A R + + ++
Sbjct: 334 FGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFRE------VDLLLLPTT 387
Query: 263 XXSQYIQLDNREQCSV--QDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGL 320
+ R+ ++ +D T ANL G PA+S P LPV +QL+AP +D
Sbjct: 388 PHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGFEGH-LPVGLQLLAPWGEDER 446
Query: 321 LLNLAHWLE 329
LL A E
Sbjct: 447 LLRAALAFE 455
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 142/313 (45%), Gaps = 44/313 (14%)
Query: 22 ALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNV 81
+LG+DTGGS R PA + GVVGFKP+YG VS G +PL S D G LTR+V D + +
Sbjct: 163 SLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEI 222
Query: 82 IAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKA 141
+AG + L+ + V GVP ++ + EV + +L+ +
Sbjct: 223 LAGES-------------IPLE--GVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPAL 267
Query: 142 GAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKD 201
A+V++VSLP + EV + + RY + ++ L E +
Sbjct: 268 RAEVREVSLP----------LEGVYEVYTRLVRYE----------AARIHEKALKE-HPE 306
Query: 202 AFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHXXXXXXXXXXX 261
F V+ +LAG L +++Y + A+ R + + ++
Sbjct: 307 GFSPQVREALLAG-LALTEKDYRD----AVAEREALRLELVKALRGVDALLLPVQPLPAP 361
Query: 262 XXXSQYIQLDNREQCSVQDYC--TQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDG 319
++ ++L++ + + + T P +L G P +++P E PV +Q++ +DG
Sbjct: 362 PLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFA-KVEGXPVGLQVVGAYGEDG 420
Query: 320 LLLNLAHWLESQV 332
+L L WLE+++
Sbjct: 421 KVLALGGWLEARL 433
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 142/324 (43%), Gaps = 26/324 (8%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
A+G D GGS R PA++CGVVG KPT+G V G P+ ++D G +TRTV D A + +
Sbjct: 186 FAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLS 245
Query: 81 VIAGSDHRDP---TTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHIS-PEVMDTWESVLK 136
VIAG D DP +V+ TLD D+ L IG+ E +S PEV D +
Sbjct: 246 VIAGRDGNDPRQADSVEAGDYLSTLDS-DVDGLRIGIVREGFGHAVSQPEVDDAVRAAAH 304
Query: 137 LMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLA 196
+ + G V++V++P + ++++ A M G YG + +L+A
Sbjct: 305 SLTEIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQMLDGNG--YGMNAEGLYDP--ELMA 360
Query: 197 E--TRK----DAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVH 250
+R+ DA VK L G++ + +Y K R+L+ + + +
Sbjct: 361 HFASRRIQHADALSETVKLVALTGHHGITTLGGASYG----KARNLVPL-ARAAYDTALR 415
Query: 251 XXXXXXXXXXXXXXSQYIQLDNREQCSVQDYC-----TQPANLAGCPAISVPINLSHEKL 305
S+ D + T P ++ G P++SVP L + L
Sbjct: 416 QFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN-GL 474
Query: 306 PVSIQLMAPNFQDGLLLNLAHWLE 329
PV + + +F D +L + E
Sbjct: 475 PVGMMITGRHFDDATVLRVGRAFE 498
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 142/324 (43%), Gaps = 26/324 (8%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
A+G D GG+ R PA++CGVVG KPT+G V G P+ ++D G +TRTV D A + +
Sbjct: 186 FAIGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLS 245
Query: 81 VIAGSDHRDP---TTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHIS-PEVMDTWESVLK 136
VIAG D DP +V+ TLD D+ L IG+ E +S PEV D +
Sbjct: 246 VIAGRDGNDPRQADSVEAGDYLSTLDS-DVDGLRIGIVREGFGHAVSQPEVDDAVRAAAH 304
Query: 137 LMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRVTPSVNSTDQLLA 196
+ + G V++V++P + ++++ A M G YG + +L+A
Sbjct: 305 SLTEIGCTVEEVNIPWHLHAFHIWNVIATDGGAYQMLDGNG--YGMNAEGLYDP--ELMA 360
Query: 197 E--TRK----DAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVH 250
+R+ DA VK L G++ + +Y K R+L+ + + +
Sbjct: 361 HFASRRIQHADALSETVKLVALTGHHGITTLGGASYG----KARNLVPL-ARAAYDTALR 415
Query: 251 XXXXXXXXXXXXXXSQYIQLDNREQCSVQDYC-----TQPANLAGCPAISVPINLSHEKL 305
S+ D + T P ++ G P++SVP L + L
Sbjct: 416 QFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVN-GL 474
Query: 306 PVSIQLMAPNFQDGLLLNLAHWLE 329
PV + + +F D +L + E
Sbjct: 475 PVGMMITGRHFDDATVLRVGRAFE 498
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 79/172 (45%), Gaps = 14/172 (8%)
Query: 20 TIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVY 79
++A+G++T GS PA+ GVVG KPT G VSR G+IP+ S D G + R+V D A V
Sbjct: 179 SVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVL 238
Query: 80 NVIAGSDHRDPTTVQKNISPV-----TLDQLDLSRLVIGVPEE--YKSEHISPEVMDTWE 132
IAG D DP T V LD L IG+ + K + P + E
Sbjct: 239 TAIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLI----E 294
Query: 133 SVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASNMARYTGLFYGHRV 184
+ +AGA V V LP+ + L E + + RY F HR
Sbjct: 295 QAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERY---FNTHRA 343
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+LG+DT GS R PA++ +VG KPT G +S G++P S+D + +V + +
Sbjct: 192 FSLGTDTAGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLIRR 251
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSE 121
+ G D DP + P +L L +GVP + + E
Sbjct: 252 IAEGYDAADPYS-----RPSQKRRLPHVGLRVGVPRQDQRE 287
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 287 NLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVE 333
NL C AI+VP LP + L+ P F D + +A L ++E
Sbjct: 427 NLLDCAAIAVPAGFIETGLPFGVTLVGPAFSDDSMALIADRLHRRLE 473
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDV------PGILTRTVED 74
+A G+D GS R PAS CGVVG KPT G +S PLV D G+ R+V D
Sbjct: 165 VAHGNDAAGSVRIPASVCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRD 221
Query: 75 CATVYNVIAGSDHR 88
A + +V++G HR
Sbjct: 222 IAALLDVVSG--HR 233
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 35/52 (67%)
Query: 283 TQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEF 334
T P N++G PAIS+PI +S + +P+ +Q++A ++ LLL +A LE + +
Sbjct: 425 TVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPW 476
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDV------PGILTRTVED 74
+A G+D G+ R PAS CGVVG KPT G +S PLV D G+ R+V D
Sbjct: 165 VAHGNDAAGAVRIPASVCGVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRD 221
Query: 75 CATVYNVIAGSDHR 88
A + +V++G HR
Sbjct: 222 IAALLDVVSG--HR 233
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 35/52 (67%)
Query: 283 TQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEF 334
T P N++G PAIS+PI +S + +P+ +Q++A ++ LLL +A LE + +
Sbjct: 425 TVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPW 476
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALG+ TGGS PA+YCG KP++ + G+ ++D G+ ED A
Sbjct: 146 LALGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+ G I P + IGV + + + P ++ +K +
Sbjct: 206 AMTGRSEF------SGIVPAKAPR-------IGVVRQEFAGAVEPAAEQGLQAAIKAAER 252
Query: 141 AGAQVKKVSLPHT 153
AGA V+ + LP
Sbjct: 253 AGASVQAIDLPEA 265
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALG+ TGGS PA+YCG KP++ + G+ ++D G+ ED A
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+ G I P + IGV + + + P ++ +K +
Sbjct: 206 AMTGRSEF------SGIVPAKAPR-------IGVVRQEFAGAVEPAAEQGLQAAIKAAER 252
Query: 141 AGAQVKKVSLPHT 153
AGA V+ + LP
Sbjct: 253 AGASVQAIDLPEA 265
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALG+ TGGS PA+YCG KP++ + G+ ++D G+ ED A
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+ G I P + IGV + + + P ++ +K +
Sbjct: 206 AMTGRSEF------SGIVPAKAPR-------IGVVRQEFAGAVEPAAEQGLQAAIKAAER 252
Query: 141 AGAQVKKVSLPHT 153
AGA V+ + LP
Sbjct: 253 AGASVQAIDLPEA 265
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALG+ TGGS PA+YCG KP++ + G+ ++D G+ ED A
Sbjct: 146 LALGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+ G I P + IGV + + + P ++ +K +
Sbjct: 206 AMTGRSEF------SGIVPAKAPR-------IGVVRQEFAGAVEPAAEQGLQAAIKAAER 252
Query: 141 AGAQVKKVSLPHT 153
AGA V+ + LP
Sbjct: 253 AGASVQAIDLPEA 265
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALG+ TGGS PA+YCG KP++ + G+ ++D G+ ED A
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+ G I P + IGV + + + P ++ +K +
Sbjct: 206 AMTGRSEF------SGIVPAKAPR-------IGVVRQEFAGAVEPAAEQGLQAAIKAAER 252
Query: 141 AGAQVKKVSLPHT 153
AGA V+ + LP
Sbjct: 253 AGASVQAIDLPEA 265
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALG+ TGGS PA+YCG KP++ + G+ ++D G+ ED A
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+ G I P + IGV + + + P ++ +K +
Sbjct: 206 AMTGRSEF------SGIVPAKAPR-------IGVVRQEFAGAVEPAAEQGLQAAIKAAER 252
Query: 141 AGAQVKKVSLPHT 153
AGA V+ + LP
Sbjct: 253 AGASVQAIDLPEA 265
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALG+ TGGS PA+YCG KP++ + G+ ++D G+ ED A
Sbjct: 146 LALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+ G I P + IGV + + + P ++ +K +
Sbjct: 206 AMTGRSEF------SGIVPAKAPR-------IGVVRQEFAGAVEPAAEQGLQAAIKAAER 252
Query: 141 AGAQVKKVSLPHT 153
AGA V+ + LP
Sbjct: 253 AGASVQAIDLPEA 265
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 13/133 (9%)
Query: 21 IALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
+ALG+ TGG PA+YCG KP++ + G+ ++D G+ ED A
Sbjct: 146 LALGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLL 205
Query: 81 VIAGSDHRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAK 140
+ G I P + IGV + + + P ++ +K +
Sbjct: 206 AMTGRSEF------SGIVPAKAPR-------IGVVRQEFAGAVEPAAEQGLQAAIKAAER 252
Query: 141 AGAQVKKVSLPHT 153
AGA V+ + LP
Sbjct: 253 AGASVQAIDLPEA 265
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 25 SDTGGSTRNPASYCGVVGFKPTYGTVSRHGL 55
+D GGS R P+++CG+ G KPT +S+ GL
Sbjct: 200 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 230
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 25 SDTGGSTRNPASYCGVVGFKPTYGTVSRHGL 55
+D GGS R P+++CG+ G KPT +S+ GL
Sbjct: 207 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 237
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 25 SDTGGSTRNPASYCGVVGFKPTYGTVSRHGL 55
+D GGS R P+++CG+ G KPT +S+ GL
Sbjct: 206 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 236
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 25 SDTGGSTRNPASYCGVVGFKPTYGTVSRHGL 55
+D GGS R P+++CG+ G KPT +S+ GL
Sbjct: 226 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 256
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 25 SDTGGSTRNPASYCGVVGFKPTYGTVSRHGL 55
+D GGS R P+++CG+ G KPT +S+ GL
Sbjct: 244 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 25 SDTGGSTRNPASYCGVVGFKPTYGTVSRHGL 55
+D GGS R P+++CG+ G KPT +S+ GL
Sbjct: 244 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 25 SDTGGSTRNPASYCGVVGFKPTYGTVSRHGL 55
+D GGS R P+++CG+ G KPT +S+ GL
Sbjct: 230 TDIGGSIRFPSAFCGICGLKPTGNRLSKSGL 260
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 38 CGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
G VG+ TYG V+ + L+N + ++ R D + VY+
Sbjct: 61 AGTVGWGETYGIVAPGAVAALINDLLAGFVIGRDASDPSAVYD 103
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 38 CGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYN 80
G VG+ TYG V+ + L+N + ++ R D + VY+
Sbjct: 81 AGTVGWGETYGIVAPGAVAALINDLLAGFVIGRDASDPSAVYD 123
>pdb|3MDO|A Chain A, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
pdb|3MDO|B Chain B, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
Length = 389
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 168 VASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFG 204
V+S + R L G ++ +N TD+LLAE R+ G
Sbjct: 104 VSSTIGRNKLLVPGEVISAIINGTDELLAELREXGVG 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,722,725
Number of Sequences: 62578
Number of extensions: 377140
Number of successful extensions: 776
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 49
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)