Query psy10133
Match_columns 342
No_of_seqs 160 out of 1199
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 18:43:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 9.7E-67 3.3E-71 494.4 27.8 323 12-339 160-483 (485)
2 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 7.5E-67 2.6E-71 493.0 24.5 324 12-340 153-477 (478)
3 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 1E-65 3.6E-70 483.9 26.7 318 12-339 147-466 (471)
4 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 4.9E-65 1.7E-69 482.1 23.1 319 12-338 148-467 (476)
5 3a1k_A Amidase; AS family enzy 100.0 3.1E-62 1.1E-66 465.7 21.8 321 12-336 177-506 (521)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 6.3E-62 2.1E-66 462.7 21.8 305 12-337 156-479 (493)
7 2dc0_A Probable amidase; struc 100.0 2.7E-61 9.1E-66 450.8 19.3 279 12-333 153-434 (434)
8 1o9p_A Malonamidase E2; malona 100.0 2.3E-60 8E-65 441.5 21.0 274 12-333 137-411 (414)
9 1m22_A Peptide amidase, PAM; e 100.0 9.3E-60 3.2E-64 448.5 24.0 307 12-339 171-491 (503)
10 3ppm_A Fatty-acid amide hydrol 100.0 2.6E-58 8.7E-63 440.4 21.1 305 12-337 217-571 (573)
11 2i0f_A 6,7-dimethyl-8-ribityll 26.4 1E+02 0.0035 23.6 5.0 42 109-153 12-53 (157)
12 2c92_A 6,7-dimethyl-8-ribityll 25.2 77 0.0026 24.4 4.0 44 107-153 15-59 (160)
13 3obf_A Putative transcriptiona 25.0 62 0.0021 24.9 3.6 49 288-337 118-176 (176)
14 3ktb_A Arsenical resistance op 23.8 1.9E+02 0.0065 20.5 5.6 33 122-155 24-56 (106)
15 1bb1_A Designed, thermostable 22.7 7.9 0.00027 20.5 -1.4 9 6-14 27-35 (36)
16 3nq4_A 6,7-dimethyl-8-ribityll 21.8 1.2E+02 0.0041 23.2 4.5 45 107-154 10-58 (156)
17 3mq0_A Transcriptional repress 21.7 91 0.0031 26.2 4.3 51 287-338 214-274 (275)
18 3r4k_A Transcriptional regulat 21.5 1.1E+02 0.0038 25.4 4.8 52 288-340 193-254 (260)
19 2hw2_A Rifampin ADP-ribosyl tr 20.8 1.3E+02 0.0046 22.3 4.3 37 107-145 103-140 (143)
20 1ysp_A Transcriptional regulat 20.2 1.1E+02 0.0038 23.5 4.3 48 288-336 119-176 (181)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=9.7e-67 Score=494.42 Aligned_cols=323 Identities=36% Similarity=0.576 Sum_probs=274.1
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT 91 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~ 91 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||||||+|+++++++|.|+|+.|+.
T Consensus 160 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~ 239 (485)
T 3ip4_A 160 AAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDST 239 (485)
T ss_dssp HHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTT
T ss_pred HHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccCCCCCcCcc-CCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHHHHHHhHHHHHH
Q psy10133 92 TVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVAS 170 (342)
Q Consensus 92 ~~~~p~~~~~~~-~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~ 170 (342)
+.+.|+.++... ..+.+++||||+.+++...++++++++++++++.|+++|++|+++++|........|..++..|+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~ 319 (485)
T 3ip4_A 240 SAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASS 319 (485)
T ss_dssp SCCCCCCCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHHH
T ss_pred ccccCccchhhhhccCccCcEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcHHHHHHHHHHHHHHHHHH
Confidence 887776554333 4467899999999877667899999999999999999999999999998766677788888899999
Q ss_pred HhhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10133 171 NMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVH 250 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D 250 (342)
++.+|++..++++.. ....+++++...+...+.+.++.++..|.........+.+|.++++.|+.+++.+.++| +++|
T Consensus 320 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~-~~~D 397 (485)
T 3ip4_A 320 NLSRFDGIRYGYHSK-EAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVF-ENYD 397 (485)
T ss_dssp HTTTCSSSSSSCCCT-TCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHH-TTCS
T ss_pred HHHhhhhhhcccccc-ccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence 998887766654432 34567777766666778898988888776433323333457889999999999999999 7999
Q ss_pred EEEecCCCCCCCCcchhhhcccccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHHHHHHHHH
Q psy10133 251 ALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLES 330 (342)
Q Consensus 251 ~li~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~~a~~le~ 330 (342)
+||+||++.+||+++.... +.. ..+....||.++|++|+|+++||+|++ +|||+||||+|++|+|+.||++|+++|+
T Consensus 398 ~ll~Pt~~~~a~~~~~~~~-~~~-~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlqlvg~~~~d~~lL~~A~~lE~ 474 (485)
T 3ip4_A 398 VVVGPTAPTTAFNLGEEID-DPL-TMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAYQYET 474 (485)
T ss_dssp EEEEESSSSSCCBTTTSTT-CHH-HHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCcccccC-ChH-HHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999999999999876421 111 111123489999999999999999985 9999999999999999999999999999
Q ss_pred hcCCCcccc
Q psy10133 331 QVEFNIEKL 339 (342)
Q Consensus 331 ~~~~~~~~~ 339 (342)
+++|+.+++
T Consensus 475 ~~~~~~~~p 483 (485)
T 3ip4_A 475 QYNLHDVYE 483 (485)
T ss_dssp HSCCTTTGG
T ss_pred hcCcccCCC
Confidence 999987654
No 2
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=7.5e-67 Score=492.99 Aligned_cols=324 Identities=38% Similarity=0.629 Sum_probs=276.5
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT 91 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~ 91 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||||||+|+++++++|.|+|+.|+.
T Consensus 153 aaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~ 232 (478)
T 3h0l_A 153 ASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDST 232 (478)
T ss_dssp HHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTT
T ss_pred HHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccCCCCCcCcc-CCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHHHHHHhHHHHHH
Q psy10133 92 TVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVAS 170 (342)
Q Consensus 92 ~~~~p~~~~~~~-~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~ 170 (342)
+.+.|+.++... ..+.+++||||+.+++...++++++++++++++.|+++|++|+++++|........|..++..|+..
T Consensus 233 ~~~~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~v~~p~~~~~~~~~~~~~~~e~~~ 312 (478)
T 3h0l_A 233 SAKVPVPEWSEEVKKEVKGLKIGLPKEFFEYELQPQVKEAFENFIKELEKEGFEIKEVSLPHVKYSIPTYYIIAPSEASS 312 (478)
T ss_dssp SCCCCCCCHHHHTTCCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHHH
T ss_pred ccccCccchhhhhccCCCCCEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcHHHHHHHHHHHHHHHHHH
Confidence 887776544222 3467899999999877667899999999999999999999999999998766677788888999999
Q ss_pred HhhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10133 171 NMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVH 250 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D 250 (342)
++.+|++..++.+.. ......+++...+...+.+.++.++..|...+.....+.+|.++++.|+.+++.+.++| +++|
T Consensus 313 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~-~~~D 390 (478)
T 3h0l_A 313 NLARYDGVRYGYRAK-EYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAF-EEVD 390 (478)
T ss_dssp HTTTCSSSSSSCCCS-CCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHT-TTCS
T ss_pred HHHHhhhhhhccccc-ccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence 998888766655432 33456677766666778899999888776544333334568889999999999999999 7999
Q ss_pred EEEecCCCCCCCCcchhhhcccccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHHHHHHHHH
Q psy10133 251 ALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLES 330 (342)
Q Consensus 251 ~li~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~~a~~le~ 330 (342)
+||+||++.+||+++.... +.. .......||.++|++|+|+++||+|+ .+|||+||||+|++|+|+.||++|+++|+
T Consensus 391 ~ll~Pt~~~~a~~~~~~~~-~~~-~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~A~~lE~ 467 (478)
T 3h0l_A 391 VIASPTTPTLPFKFGERLE-NPI-EMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQLIGKHWDETTLLQISYLWEQ 467 (478)
T ss_dssp EEEEESCSSSCCBTTTTSS-SHH-HHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcccccC-ChH-hhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999999876421 111 11112348999999999999999999 89999999999999999999999999999
Q ss_pred hcCCCccccc
Q psy10133 331 QVEFNIEKLL 340 (342)
Q Consensus 331 ~~~~~~~~~~ 340 (342)
+++|+.+++|
T Consensus 468 ~~~~~~~~p~ 477 (478)
T 3h0l_A 468 KFKHYEKIPL 477 (478)
T ss_dssp HSCGGGCCSC
T ss_pred hcCcccCCCC
Confidence 9999988776
No 3
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=1e-65 Score=483.89 Aligned_cols=318 Identities=35% Similarity=0.516 Sum_probs=270.1
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT 91 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~ 91 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||||||+|+++++++|.|+|+.|+.
T Consensus 147 aaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~ 226 (471)
T 3kfu_E 147 AALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDAT 226 (471)
T ss_dssp HHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTT
T ss_pred HHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccCCCCCcCcc-CCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHHHHHHhHHHHHH
Q psy10133 92 TVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVAS 170 (342)
Q Consensus 92 ~~~~p~~~~~~~-~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~ 170 (342)
+.+.| .++... ..+.+++||||+.+++ ..++++++++++++++.|+++|++|+++++|........|..++..|+..
T Consensus 227 ~~~~~-~~~~~~~~~~~~~lrIgv~~~~~-~~~~p~v~~a~~~a~~~L~~~G~~v~~v~~p~~~~~~~~~~~~~~~e~~~ 304 (471)
T 3kfu_E 227 SLDLP-PRFQEALEGPLPPLRLGVVREAL-AGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASS 304 (471)
T ss_dssp CCCCC-CCTTCCSCCCCSSCEEEEEGGGT-TTCCHHHHHHHHHHHHHHHTTTCEEEEECCTTGGGHHHHHHHHHHHHHHH
T ss_pred ccCCC-cchhhhhccCCCCCEEEEECCcc-CCCCHHHHHHHHHHHHHHHHcCCeeeeecCccHHHHHHHHHHHHHHHHHH
Confidence 87766 333222 3467899999999877 67899999999999999999999999999997766677788888999999
Q ss_pred HhhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10133 171 NMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVH 250 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D 250 (342)
++.+|++..++.+.. .....+++...+.. +.+.++.++..|...+.....+.+|.++++.|+.+++.+.++| +++|
T Consensus 305 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~-~~~D 380 (471)
T 3kfu_E 305 NLARYDGTLYGRRAA--GEEVEGMMEATRAL-FGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALF-REVD 380 (471)
T ss_dssp HGGGCSTTTTSCCCC--CSSSHHHHHHHHTT-SCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHT-TTCS
T ss_pred HHHHhhhhccccccc--hhhHHHHHHhhhhh-cCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence 999888766655421 24456666555555 8899998888776554433333578889999999999999999 7899
Q ss_pred EEEecCCCCCCCCcchhhhcccccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHHHHHHHHH
Q psy10133 251 ALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLES 330 (342)
Q Consensus 251 ~li~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~~a~~le~ 330 (342)
+||+|+++.+||+++.... . ...+....||.++|++|+|+++||+|+ .+|||+||||+|++|+|+.||++|+++|+
T Consensus 381 vll~Pt~~~~a~~~~~~~~--~-~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~D~~LL~~A~~lE~ 456 (471)
T 3kfu_E 381 LLLLPTTPHPAFPFGARRD--P-LAMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPWGEDERLLRAALAFEE 456 (471)
T ss_dssp EEEEESCSSSCCBTTTTCS--H-HHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred EEEeCCcCCCCCccccccc--h-HHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999999876321 1 111112238999999999999999999 89999999999999999999999999999
Q ss_pred hc-CCCcccc
Q psy10133 331 QV-EFNIEKL 339 (342)
Q Consensus 331 ~~-~~~~~~~ 339 (342)
++ +|+.+++
T Consensus 457 ~~g~w~~~~p 466 (471)
T 3kfu_E 457 ATARAHLKAP 466 (471)
T ss_dssp HSSCCCCCTT
T ss_pred HhcCcccCCC
Confidence 99 8987765
No 4
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=4.9e-65 Score=482.11 Aligned_cols=319 Identities=39% Similarity=0.639 Sum_probs=253.2
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT 91 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~ 91 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||||||+|+++++++|.|.|+.|+.
T Consensus 148 aAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~ 227 (476)
T 2gi3_A 148 AAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDAT 227 (476)
T ss_dssp HHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTT
T ss_pred HHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CccCCCCCcCcc-CCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHHHHHHhHHHHHH
Q psy10133 92 TVQKNISPVTLD-QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVAS 170 (342)
Q Consensus 92 ~~~~p~~~~~~~-~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~ 170 (342)
+.+.|+ ++... ..+.+++||||+.+++...++++++++++++++.|+++|++|+++++|........|..++..|++.
T Consensus 228 ~~~~p~-~~~~~~~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~ 306 (476)
T 2gi3_A 228 TVNRKV-DFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIAPAEASS 306 (476)
T ss_dssp CCSCCC-CSSTTTTSCCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHHT
T ss_pred ccCCCc-chhhhhhcCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCchHHHHHHHHHHHHHHHHH
Confidence 876665 33221 3356889999998876567899999999999999999999999999987766666777788889888
Q ss_pred HhhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10133 171 NMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVH 250 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D 250 (342)
++.+|++..++.+.. ...+.+++...+...+.+.++.++..|...+.....+.+|.++++.|+.+++.+.++| +++|
T Consensus 307 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~-~~~D 383 (476)
T 2gi3_A 307 NLARFDGVKYGLRIK--EKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVL-SQYD 383 (476)
T ss_dssp C--------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSS
T ss_pred HHHHhhccccccccc--cccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence 887777654433210 0122334433344567888888888887655433444578889999999999999999 6899
Q ss_pred EEEecCCCCCCCCcchhhhcccccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHHHHHHHHH
Q psy10133 251 ALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLES 330 (342)
Q Consensus 251 ~li~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~~a~~le~ 330 (342)
+||+|+++.+||+++. . .+.. ..+....||.++|++|+|+++||+|++ +|||+||||+|++|+|+.||++|+++|+
T Consensus 384 ~ll~Pt~~~~a~~~~~-~-~~~~-~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~d~~lL~~A~~lE~ 459 (476)
T 2gi3_A 384 AILTPTSPVTAFKIGE-I-KDPL-TYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVGVQVIGRRFADGKVFRIARAIEK 459 (476)
T ss_dssp EEEEESCSSCCCBTTT-C-CCHH-HHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCcccc-c-ccch-hhhhccceeccccccCCceEEEecccC-CCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999999999999875 1 1111 111123589999999999999999984 8999999999999999999999999999
Q ss_pred hcCCCccc
Q psy10133 331 QVEFNIEK 338 (342)
Q Consensus 331 ~~~~~~~~ 338 (342)
+++|+.+.
T Consensus 460 ~~~~~~~~ 467 (476)
T 2gi3_A 460 NSPYNENG 467 (476)
T ss_dssp HCTTSBTT
T ss_pred hcCccccc
Confidence 99998763
No 5
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=3.1e-62 Score=465.68 Aligned_cols=321 Identities=26% Similarity=0.306 Sum_probs=249.9
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT 91 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~ 91 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||||||+|+++++++|+|+|+.|+.
T Consensus 177 AAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vlag~d~~D~~ 256 (521)
T 3a1k_A 177 ALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPR 256 (521)
T ss_dssp HHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHCSCCSSCTT
T ss_pred HHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHHhCCCCCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Ccc-CCCCCcCcc-CCCCCCcEEEEeccCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHHHHHHhHHHH
Q psy10133 92 TVQ-KNISPVTLD-QLDLSRLVIGVPEEYKS-EHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEV 168 (342)
Q Consensus 92 ~~~-~p~~~~~~~-~~~~~~lrIg~~~~~~~-~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~ 168 (342)
+.. .|..++... ..+.+++||||+.+++. ..++++++++++++++.|+++|++|+++++|........|..+...+.
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga~v~ev~~p~~~~~~~~~~~~~~~~~ 336 (521)
T 3a1k_A 257 QADSVEAGDYLSTLDSDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEEVNIPWHLHAFHIWNVIATDGG 336 (521)
T ss_dssp SCTTCCCCCSSTTTTSCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEEEECCTHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCchHhHHHHHHHHHHHHH
Confidence 632 222222221 34578999999887553 457999999999999999999999999998865444455555555565
Q ss_pred HHHhhhhcccccCCcCCCCCCChHHH---HHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q psy10133 169 ASNMARYTGLFYGHRVTPSVNSTDQL---LAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVW 245 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~ 245 (342)
..++.++++..+.+... ......+. +...+...+.+.++.++..|.... ......+|.++++.|+.+++.+.++|
T Consensus 337 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~-~~~~~~~~~~a~~~r~~~~~~~~~~~ 414 (521)
T 3a1k_A 337 AYQMLDGNGYGMNAEGL-YDPELMAHFASRRIQHADALSETVKLVALTGHHGI-TTLGGASYGKARNLVPLARAAYDTAL 414 (521)
T ss_dssp HHHTTTTTTTCSSSCSC-CCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhccccccchhhh-hhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhh-ccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665555432211110 00111111 122345678899998888775432 12334678899999999999999999
Q ss_pred hcCCCEEEecCCCCCCCCcchhhhcc--cccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHH
Q psy10133 246 HSGVHALVTPTTLTTAPLVSQYIQLD--NREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLN 323 (342)
Q Consensus 246 ~~~~D~li~Pt~~~~ap~~~~~~~~~--~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~ 323 (342)
+++|+||+||++.+||+++...... ..........||.++|++|+|+++||+|+ .+|||+||||+|++|+|+.||+
T Consensus 415 -~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~~~d~~LL~ 492 (521)
T 3a1k_A 415 -RQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDATVLR 492 (521)
T ss_dssp -HHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECSTTCHHHHHH
T ss_pred -cCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeeccc-CCCCCeeEEEEcCCCCHHHHHH
Confidence 7899999999999999987532100 00011113457899999999999999998 7999999999999999999999
Q ss_pred HHHHHHH-hcCCCc
Q psy10133 324 LAHWLES-QVEFNI 336 (342)
Q Consensus 324 ~a~~le~-~~~~~~ 336 (342)
+|++||+ ..+|+.
T Consensus 493 ~A~~~E~~~~~~~~ 506 (521)
T 3a1k_A 493 VGRAFEKLRGAFPT 506 (521)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HHHHHHHhhcccCC
Confidence 9999999 878875
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=6.3e-62 Score=462.74 Aligned_cols=305 Identities=24% Similarity=0.340 Sum_probs=246.2
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCc--c-cCCCCCCccccCCCCHHHHHHHHHHHcCCCCC
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGL--I-PLVNSMDVPGILTRTVEDCATVYNVIAGSDHR 88 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~--~-p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~ 88 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|+ . |.+.++|++|||||||+|+++++++|.|.|+.
T Consensus 156 AAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~ 235 (493)
T 3a2q_A 156 AAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPG 235 (493)
T ss_dssp HHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTT
T ss_pred HHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCC
Confidence 78999999999999999999999999999999999999999998 5 88889999999999999999999999999999
Q ss_pred CCCCccCCCCCcCcc-CCCCCCcEEEEeccCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCc--chhHHHHHH
Q psy10133 89 DPTTVQKNISPVTLD-QLDLSRLVIGVPEEYK--SEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQ--SSIVTYSIL 163 (342)
Q Consensus 89 d~~~~~~p~~~~~~~-~~~~~~lrIg~~~~~~--~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~--~~~~~~~~~ 163 (342)
|+.+.+.|..++... ..+.+++||||+.+++ ...++++++++++++++.|+++|++|+++++|... .....|..+
T Consensus 236 d~~~~~~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~ 315 (493)
T 3a2q_A 236 DTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVNDAYPEALGDRSFLKDYSTI 315 (493)
T ss_dssp CSCCCCCCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCGGGGCCTHHHHHHHH
T ss_pred CcccccCCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHHHHHHH
Confidence 988765553222111 2346889999998876 45789999999999999999999999999887332 344566677
Q ss_pred hHHHHHHHhhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHH
Q psy10133 164 NQCEVASNMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLR 243 (342)
Q Consensus 164 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~ 243 (342)
+..|++.++..+... ++. ..+...+++.++.++..|..++. .+|.++++.|+.+++.+.+
T Consensus 316 ~~~e~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~a~~~r~~~~~~~~~ 375 (493)
T 3a2q_A 316 CDVAIAREIERNGEL-IGR--------------PLTEDDVEWTSWEMVKRADQVTG-----RAFAACVDELRYYAGKVER 375 (493)
T ss_dssp HHHHHHHHHHHHHHH-HTS--------------CCCTTTSCHHHHHHHHHHHTCCH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hcC--------------ccChhhcCHHHHHHHHhhccCCH-----HHHHHHHHHHHHHHHHHHH
Confidence 777877654433210 100 01123467777888877766653 7788999999999999999
Q ss_pred HH-hcCCCEEEecCCCCCCCCcchhhhc---------cc-ccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEe
Q psy10133 244 VW-HSGVHALVTPTTLTTAPLVSQYIQL---------DN-REQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLM 312 (342)
Q Consensus 244 ~~-~~~~D~li~Pt~~~~ap~~~~~~~~---------~~-~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlv 312 (342)
+| + ++|+||+|+++.+||+++..... .. .........||.++|++|+|+++||+|++.+|||+||||+
T Consensus 376 ~~~~-~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlv 454 (493)
T 3a2q_A 376 WWEA-GWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIV 454 (493)
T ss_dssp HHHT-TCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEE
T ss_pred HHhc-CCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEEe
Confidence 98 5 69999999999999998764311 00 0001112358999999999999999999889999999999
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCcc
Q psy10133 313 APNFQDGLLLNLAHWLESQVEFNIE 337 (342)
Q Consensus 313 g~~~~D~~LL~~a~~le~~~~~~~~ 337 (342)
|++|+|+.||++|+++|++++|+.+
T Consensus 455 g~~~~d~~lL~~A~~lE~~~~~~~~ 479 (493)
T 3a2q_A 455 AAYGREDLLLQVAAQLEGALPWVAR 479 (493)
T ss_dssp ESTTCHHHHHHHHHHHHHHSCCTTC
T ss_pred cCCCChHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999998543
No 7
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=2.7e-61 Score=450.77 Aligned_cols=279 Identities=30% Similarity=0.465 Sum_probs=236.1
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT 91 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~ 91 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|. +.|+.
T Consensus 153 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~ 231 (434)
T 2dc0_A 153 VAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLE 231 (434)
T ss_dssp HHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCC
T ss_pred HHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999997 65542
Q ss_pred CccCCCCCcCccCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHHHHHHhHHHHHHH
Q psy10133 92 TVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQCEVASN 171 (342)
Q Consensus 92 ~~~~p~~~~~~~~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~e~~~~ 171 (342)
+.+++||||+.++++..++++++++++++++.|+++|++|+++++| .......+..++..|.+..
T Consensus 232 --------------~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p-~~~~~~~~~~~~~~e~~~~ 296 (434)
T 2dc0_A 232 --------------GVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP-LEGVYEVYTRLVRYEAARI 296 (434)
T ss_dssp --------------CCCSCEEEECHHHHTTCSCHHHHHHHHHHHHHTTTTTCEEEECCCC-CTTHHHHHHHHHHHHHHHH
T ss_pred --------------cccCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCC-cHHHHHHHHHHHHHHHHHH
Confidence 2357899999887666789999999999999999999999999998 5555556666777777765
Q ss_pred hhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Q psy10133 172 MARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVHA 251 (342)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ 251 (342)
+..+ + ..+...+.+.++.++..|..++. .+|.++++.|+.+++.+.++| +++|+
T Consensus 297 ~~~~-------------------~-~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~a~~~r~~~~~~~~~~~-~~~D~ 350 (434)
T 2dc0_A 297 HEKA-------------------L-KEHPEGFSPQVREALLAGLALTE-----KDYRDAVAEREALRLELVKAL-RGVDA 350 (434)
T ss_dssp SHHH-------------------H-HHCGGGSCHHHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHHHHHHH-TTSSE
T ss_pred HHHH-------------------H-HhchhhcCHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHHHHHHHH-hcCCE
Confidence 4332 1 12335678888888888766653 778899999999999999999 78999
Q ss_pred EEecCCCCCCCCcchhhhc--cc-ccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHHHHHHH
Q psy10133 252 LVTPTTLTTAPLVSQYIQL--DN-REQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWL 328 (342)
Q Consensus 252 li~Pt~~~~ap~~~~~~~~--~~-~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~~a~~l 328 (342)
||+|+++.+||+++..... +. .........||.++|++|+|+++||+|+ .+|||+||||+|++|+|+.||++|+++
T Consensus 351 ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvqlvg~~~~d~~lL~~A~~l 429 (434)
T 2dc0_A 351 LLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQVVGAYGEDGKVLALGGWL 429 (434)
T ss_dssp EEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred EEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEEEECCCCchHHHHHHHHHH
Confidence 9999999999998764210 00 1111112458999999999999999998 899999999999999999999999999
Q ss_pred HHhcC
Q psy10133 329 ESQVE 333 (342)
Q Consensus 329 e~~~~ 333 (342)
|++++
T Consensus 430 E~~~g 434 (434)
T 2dc0_A 430 EARLG 434 (434)
T ss_dssp HTTCC
T ss_pred HHhhC
Confidence 98764
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=2.3e-60 Score=441.46 Aligned_cols=274 Identities=22% Similarity=0.309 Sum_probs=232.2
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT 91 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~ 91 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|.+ ++.
T Consensus 137 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~--~~~ 214 (414)
T 1o9p_A 137 AAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS--EFS 214 (414)
T ss_dssp HHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCG--GGS
T ss_pred HHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCC--ccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999975 110
Q ss_pred CccCCCCCcCccCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCc-chhHHHHHHhHHHHHH
Q psy10133 92 TVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQ-SSIVTYSILNQCEVAS 170 (342)
Q Consensus 92 ~~~~p~~~~~~~~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~-~~~~~~~~~~~~e~~~ 170 (342)
+ ..+.+++||||+.++++..++++++++++++++.|+++|++|+++++|... .....+..++..|.+.
T Consensus 215 ----~-------~~~~~~lrig~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~e~~~ 283 (414)
T 1o9p_A 215 ----G-------IVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHR 283 (414)
T ss_dssp ----S-------CCCCSSCEEEECCCGGGCCCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----c-------ccCCCCCEEEEECccccCCCCHHHHHHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHHHHHHHHHHH
Confidence 1 123568999999888777789999999999999999999999999887532 2333445566777776
Q ss_pred HhhhhcccccCCcCCCCCCChHHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10133 171 NMARYTGLFYGHRVTPSVNSTDQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQDFLRVWHSGVH 250 (342)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D 250 (342)
++..+. ..+...+.+.++.++..|..++. .+|.++++.|+.+++++.++| +++|
T Consensus 284 ~~~~~~--------------------~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~a~~~r~~~~~~~~~~~-~~~D 337 (414)
T 1o9p_A 284 ALAWEF--------------------SEHHDEIAPMLRASLDATVGLTP-----KEYDEARRIGRRGRRELGEVF-EGVD 337 (414)
T ss_dssp HTHHHH--------------------HHSGGGSCHHHHHHHHHTTTCCH-----HHHHHHHHHHHHHHHHHHHHT-TTCS
T ss_pred HHHHHH--------------------HhChhhcCHHHHHHHHhccCCCH-----HHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 554321 12234578888888888876663 778899999999999999999 7899
Q ss_pred EEEecCCCCCCCCcchhhhcccccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCChHHHHHHHHHHHH
Q psy10133 251 ALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQDGLLLNLAHWLES 330 (342)
Q Consensus 251 ~li~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~D~~LL~~a~~le~ 330 (342)
+||+|+++.++|+++.... . ...||.++|++|+|+++||+|++. |||+||||+|++|+|+.||++|+++|+
T Consensus 338 ~ll~Pt~~~~a~~~~~~~~--~------~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d~~lL~~a~~le~ 408 (414)
T 1o9p_A 338 VLLTYSAPGTAPAKALAST--G------DPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGNDAHALATAWFLED 408 (414)
T ss_dssp EEEEESSSSSCCBGGGCCC--C------CGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCcccccCC--c------ccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 9999999999998864210 0 225899999999999999999877 999999999999999999999999999
Q ss_pred hcC
Q psy10133 331 QVE 333 (342)
Q Consensus 331 ~~~ 333 (342)
+++
T Consensus 409 ~~~ 411 (414)
T 1o9p_A 409 ALA 411 (414)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 9
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=9.3e-60 Score=448.50 Aligned_cols=307 Identities=26% Similarity=0.312 Sum_probs=245.8
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCCCCccccCCCCHHHHHHHHHHHcCCCCCCCC
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNSMDVPGILTRTVEDCATVYNVIAGSDHRDPT 91 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~~d~~Gp~arsv~Dl~~~~~~l~g~~~~d~~ 91 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||||||+|+++++++|.|.|+.|+.
T Consensus 171 aAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g~d~~d~~ 250 (503)
T 1m22_A 171 VAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPA 250 (503)
T ss_dssp HHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCCCCTTCGG
T ss_pred HHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcCCCCCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CccCCCCC---cCcc--CCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHHHHHHhHH
Q psy10133 92 TVQKNISP---VTLD--QLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVTYSILNQC 166 (342)
Q Consensus 92 ~~~~p~~~---~~~~--~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~ 166 (342)
+.+.|+.+ +... ....+++||||+.+++ .++++++++++++++.|+++|++|+++++|........+..++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~--~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~ 328 (503)
T 1m22_A 251 TATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL--LKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLLLY 328 (503)
T ss_dssp GGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG--GGSTTHHHHHHHHHHHHHHTTCEEEEECCTTTTTTHHHHHHHHHH
T ss_pred ccccccccccchhhhccccCCCCCEEEEECccc--cCCHHHHHHHHHHHHHHHHcCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 87666531 2111 1246889999998765 279999999999999999999999999998765444455667778
Q ss_pred HHHHHhhhhcccccCCcCCCCCCChHHHHHhhh------hhcccHHHHHHHhcccchhhhhchHHHHHHHHHHHHHHHHH
Q psy10133 167 EVASNMARYTGLFYGHRVTPSVNSTDQLLAETR------KDAFGLVVKSRILAGNYFLLKRNYENYFLKALKVRSLIAQD 240 (342)
Q Consensus 167 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~ 240 (342)
|+..++..|..... . ......+++...+ ...+.+.++.++..+..++. .+|.++.+.++.+++.
T Consensus 329 e~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~~~~~~~~ 398 (503)
T 1m22_A 329 EFKAGLERYFNTHR-A----PLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLAD-----PAYIRARSDARRLAGP 398 (503)
T ss_dssp HHHHHHHHHHHHTT-C----SCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTC-----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC-c----ccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHHH
Confidence 88888877764321 0 1233445443221 23466777888877765553 6678888887777665
Q ss_pred --HHHHHh-cCCCEEEecCCCCCCCCcchhhhcccccccccccccccCCCCCCCCeEEecCCCCCCCCceeEEEecCCCC
Q psy10133 241 --FLRVWH-SGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLSHEKLPVSIQLMAPNFQ 317 (342)
Q Consensus 241 --~~~~~~-~~~D~li~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~~~glPvGiqlvg~~~~ 317 (342)
+.++|+ .++|+||+|++ .++++++... +. . ...||.++|++|+|+++||+|++ +|||+||||+|++|+
T Consensus 399 ~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~--~~---~--~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~~ 469 (503)
T 1m22_A 399 EGIDAALAAHQLDALVAPTT-GVAWPIRSEG--DD---F--PGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTAWS 469 (503)
T ss_dssp TTHHHHHHHTTCSEEEEECC-CCCCBTTC-----C---C--TTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTC
T ss_pred HHHHHHHhhcCCCEEEeCCC-ccCccccccc--Cc---c--cccccccchhhCCCeEEeccccC-CCCCeEEEEECCCCC
Confidence 999993 25999999999 5666664211 11 0 14589999999999999999985 899999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCcccc
Q psy10133 318 DGLLLNLAHWLESQVEFNIEKL 339 (342)
Q Consensus 318 D~~LL~~a~~le~~~~~~~~~~ 339 (342)
|+.||++|+++|++++|+.+..
T Consensus 470 d~~lL~~A~~~E~~~~~~~~p~ 491 (503)
T 1m22_A 470 EPKLIEMAYAYEQRTRARRPPH 491 (503)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCC
T ss_pred hHHHHHHHHHHHHhhCCCCCCC
Confidence 9999999999999999866543
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.6e-58 Score=440.38 Aligned_cols=305 Identities=19% Similarity=0.158 Sum_probs=228.5
Q ss_pred ccccCCCCeeeeeccCCCcccccccccCceeeccCCCccCCCCcccCCCC----CCccccCCCCHHHHHHHHHHHcCCC-
Q psy10133 12 FTGQGPVPTIALGSDTGGSTRNPASYCGVVGFKPTYGTVSRHGLIPLVNS----MDVPGILTRTVEDCATVYNVIAGSD- 86 (342)
Q Consensus 12 ~~~Aag~~~~aiGtDtgGSiR~PAa~~Gl~g~kPt~g~is~~G~~p~~~~----~d~~Gp~arsv~Dl~~~~~~l~g~~- 86 (342)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+.+ +|++|||||||+|+++++++|.+.+
T Consensus 217 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~ 296 (573)
T 3ppm_A 217 ALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHL 296 (573)
T ss_dssp HHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHH
T ss_pred HHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccc
Confidence 68999999999999999999999999999999999999999999998765 8999999999999999999999977
Q ss_pred -CCCCCCccCCCCCcCccCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcchhHH-HHHHh
Q psy10133 87 -HRDPTTVQKNISPVTLDQLDLSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQSSIVT-YSILN 164 (342)
Q Consensus 87 -~~d~~~~~~p~~~~~~~~~~~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~~~~~-~~~~~ 164 (342)
..|+.+.+.||.... ....+++||||+.+++...++|+++++++++++.|+++||+|+++++|...+.... +...+
T Consensus 297 ~~~d~~~~~~~~~~~~--~~~~~~lrigv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~ 374 (573)
T 3ppm_A 297 FTLDPTVPPLPFREEV--YRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGL 374 (573)
T ss_dssp HHHCTTSCCCCCCHHH--HTCCCCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHHTTCEEEECCCTTHHHHHHTHHHHHH
T ss_pred cccCCCCCccccchhh--cccCCCCEEEEEcccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHHHHH
Confidence 357776666654211 24568999999988877788999999999999999999999999998876543322 22233
Q ss_pred HHHHHHHhhhhcccccCCcCCCCCCCh-------------HHHHHhhhhhcccHHHHHHHhcccchhhhhchHHHHHHHH
Q psy10133 165 QCEVASNMARYTGLFYGHRVTPSVNST-------------DQLLAETRKDAFGLVVKSRILAGNYFLLKRNYENYFLKAL 231 (342)
Q Consensus 165 ~~e~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~ 231 (342)
..+....+......+. ....+ ..++.... ..+.+.+...+..+...+ ..++.+++
T Consensus 375 ~~dg~~~~~~~~~~e~------~~p~~~~~~~~~~lp~~l~~~~~~~~-~~~~p~~~~~~~~~~~~s-----~~e~~~~~ 442 (573)
T 3ppm_A 375 FSDGGRSFLQNFKGDF------VDPCLGDLILILRLPSWFKRLLSLLL-KPLFPRLAAFLNNMRPRS-----AEKLWKLQ 442 (573)
T ss_dssp TTBTTHHHHGGGTTSC------CCGGGTTHHHHHTSCHHHHHHHHHHH-TTTCHHHHHHHHHTSBCB-----HHHHHHHH
T ss_pred hhhhHHHHHHHhccCc------ccHHHHHHhhhccchHHHHHHHHHHh-hhcchHHHHHHhhccccc-----HHHHHHHH
Confidence 3333332222111110 11111 11111100 122333333333333333 36778888
Q ss_pred HHHHHHHHHHHHHHh-cCCCEEEecCCCCCCCCcchhhhcccccccccccccccCCCCCCCCeEEecCCCC---------
Q psy10133 232 KVRSLIAQDFLRVWH-SGVHALVTPTTLTTAPLVSQYIQLDNREQCSVQDYCTQPANLAGCPAISVPINLS--------- 301 (342)
Q Consensus 232 ~~r~~~~~~~~~~~~-~~~D~li~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~t~~~n~~g~Pai~vP~g~~--------- 301 (342)
..|++++++|.+.|+ .++|+||+|+ +.+|++++... .......||.+||++|+|+++||+|+.
T Consensus 443 ~~r~~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~------~~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~ 515 (573)
T 3ppm_A 443 HEIEMYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPG------RATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQME 515 (573)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGG------GCGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCCCEeeCCC-CCCCcCCcccc------ccccccchhhhhHhhCCCeEEEeccccccccccccc
Confidence 899999999999993 4699999999 45888876421 111234699999999999999999864
Q ss_pred --------------------CCCCceeEEEecCCCChHHHHHHHHHHHHhcCCCcc
Q psy10133 302 --------------------HEKLPVSIQLMAPNFQDGLLLNLAHWLESQVEFNIE 337 (342)
Q Consensus 302 --------------------~~glPvGiqlvg~~~~D~~LL~~a~~le~~~~~~~~ 337 (342)
.+|+|+||||||++|+|+.||++|+.+|++++.+.+
T Consensus 516 ~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~~~ 571 (573)
T 3ppm_A 516 LYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQ 571 (573)
T ss_dssp TCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTTSC
T ss_pred ccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcccC
Confidence 379999999999999999999999999999987654
No 11
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=26.43 E-value=1e+02 Score=23.61 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=31.1
Q ss_pred CcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCC
Q psy10133 109 RLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGAQVKKVSLPHT 153 (342)
Q Consensus 109 ~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~ 153 (342)
++|||+...-+. +.=+.+.++.+++.|++.|.++..+..|-.
T Consensus 12 ~~ri~IV~arfn---~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGa 53 (157)
T 2i0f_A 12 APHLLIVEARFY---DDLADALLDGAKAALDEAGATYDVVTVPGA 53 (157)
T ss_dssp CCEEEEEEECSS---HHHHHHHHHHHHHHHHHTTCEEEEEEESSG
T ss_pred CcEEEEEEEeCc---HHHHHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 489999876442 234567778899999999987777777764
No 12
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=25.19 E-value=77 Score=24.43 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=30.1
Q ss_pred CCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEecCCCC
Q psy10133 107 LSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAGA-QVKKVSLPHT 153 (342)
Q Consensus 107 ~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~-~v~~~~~p~~ 153 (342)
.+++|||+...-+. +.=+.+.++.+++.|++.|+ ++..+..|-.
T Consensus 15 ~~~~ri~IV~arfn---~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGa 59 (160)
T 2c92_A 15 ASGVRLAIVASSWH---GKICDALLDGARKVAAGCGLDDPTVVRVLGA 59 (160)
T ss_dssp CTTCCEEEEEECSS---HHHHHHHHHHHHHHHHHTTCSCCEEEEESSG
T ss_pred CCCCEEEEEEEeCc---HHHHHHHHHHHHHHHHHcCCCceEEEECCcH
Confidence 35689999876442 23456777889999999998 4444555554
No 13
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=24.97 E-value=62 Score=24.94 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=34.2
Q ss_pred CCCCCeEEecCCCCCCCCce-eEEEecCC--CChH-------HHHHHHHHHHHhcCCCcc
Q psy10133 288 LAGCPAISVPINLSHEKLPV-SIQLMAPN--FQDG-------LLLNLAHWLESQVEFNIE 337 (342)
Q Consensus 288 ~~g~Pai~vP~g~~~~glPv-Giqlvg~~--~~D~-------~LL~~a~~le~~~~~~~~ 337 (342)
..|.-++.+|+.. .+|-++ +|.+.++. ..++ .|.+.|..+++.++++.|
T Consensus 118 ~~g~~~iAaPI~~-~~g~~~aalsv~~p~~r~~~~~~~~~~~~l~~aa~~is~~lg~~~p 176 (176)
T 3obf_A 118 SIEEVGVASPVYD-HRGNMVASVLIPAPKFRVSQDTLNSLGEACAAAAAKVTTRLGGRAP 176 (176)
T ss_dssp STTEEEEEEEEEC-TTSCEEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccCcEEEEEEEEC-CCCCEEEEEEeEeehhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3577799999964 556655 57777754 3443 567788888888887653
No 14
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=23.82 E-value=1.9e+02 Score=20.49 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEecCCCCcc
Q psy10133 122 HISPEVMDTWESVLKLMAKAGAQVKKVSLPHTQS 155 (342)
Q Consensus 122 ~~~~~v~~a~~~~~~~L~~~G~~v~~~~~p~~~~ 155 (342)
.++++..+ +...++.|+++|++|.+.++.....
T Consensus 24 ~vd~eL~~-~~~~~~~lk~~Gi~V~RyNL~~~P~ 56 (106)
T 3ktb_A 24 NINPELMR-IAVVIESLKKQGIIVTRHNLRDEPQ 56 (106)
T ss_dssp CCCHHHHH-HHHHHHHHHHTTCCCEEEETTTCTT
T ss_pred CCCHHHHH-HHHHHHHHHHCCCEEEEEccccChH
Confidence 46777665 5677999999999999999866543
No 15
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=22.71 E-value=7.9 Score=20.49 Aligned_cols=9 Identities=44% Similarity=0.349 Sum_probs=6.5
Q ss_pred eeeeecccc
Q psy10133 6 QIKEYNFTG 14 (342)
Q Consensus 6 ~~~~~~~~~ 14 (342)
.||||+||+
T Consensus 27 aikeyiaai 35 (36)
T 1bb1_A 27 AIKEYIAAI 35 (36)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 478888775
No 16
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=21.82 E-value=1.2e+02 Score=23.23 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=31.5
Q ss_pred CCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHHHCC-C---EEEEecCCCCc
Q psy10133 107 LSRLVIGVPEEYKSEHISPEVMDTWESVLKLMAKAG-A---QVKKVSLPHTQ 154 (342)
Q Consensus 107 ~~~lrIg~~~~~~~~~~~~~v~~a~~~~~~~L~~~G-~---~v~~~~~p~~~ 154 (342)
.+++|||+...-+. +.=+.+.++.+++.|++.| + ++..+..|-..
T Consensus 10 ~~~~ri~IV~arfn---~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGaf 58 (156)
T 3nq4_A 10 APDARVAITIARFN---QFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAY 58 (156)
T ss_dssp CTTCCEEEEEESTT---HHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTT
T ss_pred CCCCEEEEEEeeCc---HHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHH
Confidence 46789999776442 2345677788999999999 5 46666666543
No 17
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=21.73 E-value=91 Score=26.23 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=34.3
Q ss_pred CCCCCCeEEecCCCCCCCCce-eEEEecCC--CCh-------HHHHHHHHHHHHhcCCCccc
Q psy10133 287 NLAGCPAISVPINLSHEKLPV-SIQLMAPN--FQD-------GLLLNLAHWLESQVEFNIEK 338 (342)
Q Consensus 287 n~~g~Pai~vP~g~~~~glPv-Giqlvg~~--~~D-------~~LL~~a~~le~~~~~~~~~ 338 (342)
...|.-++.+|+.. .+|-++ +|.+.++. ..+ +.|.+.|..|++.++++.+|
T Consensus 214 ~~~gv~~vAaPV~~-~~g~~~aalsvs~p~~r~~~~~~~~~~~~l~~aA~~Is~~lg~~~~~ 274 (275)
T 3mq0_A 214 IREGMLCIGAAIRD-YSGAASAGIAISLIRSEASDEKIAYLGEELRTTANALSEKLGYRSQK 274 (275)
T ss_dssp SSTTEEEEEEEEEC-TTSCEEEEEEEEEETTSCCTTHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred cccCcEEEEEEEEC-CCCCEEEEEEEEEEhhhcCHHHHHHHHHHHHHHHHHHHHHhCCCccC
Confidence 35788899999964 566665 46777754 333 35788889999999987765
No 18
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=21.55 E-value=1.1e+02 Score=25.39 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=37.9
Q ss_pred CCCCCeEEecCCCCCCCCce-eEEEecCCC--Ch-------HHHHHHHHHHHHhcCCCccccc
Q psy10133 288 LAGCPAISVPINLSHEKLPV-SIQLMAPNF--QD-------GLLLNLAHWLESQVEFNIEKLL 340 (342)
Q Consensus 288 ~~g~Pai~vP~g~~~~glPv-Giqlvg~~~--~D-------~~LL~~a~~le~~~~~~~~~~~ 340 (342)
..|.-++.+|+.. .+|-++ +|.+.|+.. .+ ..|.+.|..+++.+++..+..+
T Consensus 193 ~~g~~~iAaPI~~-~~g~~~aalsvs~p~~r~~~~~~~~~~~~l~~aA~~Is~~lg~~~~~~~ 254 (260)
T 3r4k_A 193 EAEVHSHAVPIFG-PDRAVLGALAVAAPTSRMTPDQKRTIPPALRAAGLSLTERIGGACPPEF 254 (260)
T ss_dssp STTEEEEEEEEEC-TTSCEEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCCCTTS
T ss_pred ccCceEEEEEEEC-CCCCEEEEEEEEEehHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 5688899999964 566665 577777643 44 3578889999999998776543
No 19
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=20.77 E-value=1.3e+02 Score=22.27 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=27.8
Q ss_pred CCCcEE-EEeccCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Q psy10133 107 LSRLVI-GVPEEYKSEHISPEVMDTWESVLKLMAKAGAQV 145 (342)
Q Consensus 107 ~~~lrI-g~~~~~~~~~~~~~v~~a~~~~~~~L~~~G~~v 145 (342)
..++|| |-..+|. ..+|+..++|++-++.|++.|..+
T Consensus 103 ~~PLrIvgEv~~W~--~h~pE~lq~mr~~La~l~~~g~~~ 140 (143)
T 2hw2_A 103 REPVWIVGELTDWV--GHPPEQLAAMRQGLEELRRKGLAV 140 (143)
T ss_dssp SSCEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCcEEEEEecccC--CCCHHHHHHHHHHHHHHHhccccc
Confidence 345664 4566655 468999999999999999988764
No 20
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=20.23 E-value=1.1e+02 Score=23.52 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=32.4
Q ss_pred CCCCCeEEecCCCCCCCCc-eeEEEecCCC--Ch-------HHHHHHHHHHHHhcCCCc
Q psy10133 288 LAGCPAISVPINLSHEKLP-VSIQLMAPNF--QD-------GLLLNLAHWLESQVEFNI 336 (342)
Q Consensus 288 ~~g~Pai~vP~g~~~~glP-vGiqlvg~~~--~D-------~~LL~~a~~le~~~~~~~ 336 (342)
..|.-++.+|+.. .+|-+ .+|.+.++.. .+ ..|.+.+..+++.+++..
T Consensus 119 ~~g~~~vAaPv~~-~~g~~~~alsv~~p~~r~~~~~~~~~~~~l~~aA~~is~~lg~~~ 176 (181)
T 1ysp_A 119 EEGLRCIAVPVFD-RFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHD 176 (181)
T ss_dssp STTBEEEEEEEEC-TTSCEEEEEEECCBSSSCCHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ccCCEEEEEEEEC-CCCCEEEEEEEEeehHhcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4688899999964 45544 5677887654 33 346777888888887654
Done!